TRED - Transcriptional Regulatory Element Database

SCPD - Saccharomyces cerevisiae promoter database

A database of yeast promoters

PRODORIC2

cis-Regulatory Element Database

The cisRED database holds conserved sequence motifs identified by genome scale motif discovery, similarity, clustering, co-occurrence and coexpression calculations. Sequence inputs include low-coverag ...

TrSDB

Transcription factor database

SNP2TFBS

Regulatory SNPs affecting predicted transcription factor binding sites

Factorbook

Human transcription factor binding data from ChIP-seq

MachiBase

Drosophila melanogaster 5' mRNA transcription start site database

YeTFaSCo

Yeast Transcription Factor binding Site sequence Collection

OnTheFly

DNA-binding specificities of transcription factors in Drosophila

TTSMI

Triplex Target DNA Sites in the human genome

DPRP

A database of phenotype-specific regulatory programs derived from transcription factor binding data

PReMod

The PReMod database describes more than 100,000 computational predicted transcriptional regulatory modules within the human genome. These modules represent the regulatory potential for 229 transcripti ...

CTCF Binding Site Database

Experimentally identified and predicted CTCF binding sties

HTPSELEX

Transcription factor binding site sequences obtained using high-throughput SELEX method

TFBSbank

Transcription factor binding profiles deduced from ChIP-seq or ChIP-chip data

CMGSDB

Computational models for gene silencing in C. elegans

BloodChIP

Transcription factor binding profiles in human haematopoietic stem/progenitor cells

Greglist

G-quadruplex motifs and potentially G-quadruplex regulated genes

PlantProm

Plant promoter sequences