PReMod

Factorbook

Human transcription factor binding data from ChIP-seq

Regulatory Element Database for Drosophila

REDfly is a curated collection of known Drosophila transcriptional cis-regulatory modules (CRMs) and transcription factor binding sites (TFBSs). REDfly seeks to include all experimentally verified fly ...

TrSDB

Transcription factor database

SNP2TFBS

Regulatory SNPs affecting predicted transcription factor binding sites

PRODORIC2

YeTFaSCo

Yeast Transcription Factor binding Site sequence Collection

TRED - Transcriptional Regulatory Element Database

Transcriptional regulatory element database

OnTheFly

DNA-binding specificities of transcription factors in Drosophila

DPRP

A database of phenotype-specific regulatory programs derived from transcription factor binding data

MachiBase

Drosophila melanogaster 5' mRNA transcription start site database

HTPSELEX

Transcription factor binding site sequences obtained using high-throughput SELEX method

BloodChIP

Transcription factor binding profiles in human haematopoietic stem/progenitor cells

TFBSbank

Transcription factor binding profiles deduced from ChIP-seq or ChIP-chip data

Saccharomyces cerevisiae Transcription Factor Database

ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics ...

Locus Reference Genomic sequences

Each LRG is stable genomic DNA sequence for a region of the human genome

RegPrecise

Predicted regulons in prokaryotic genomes

CMGSDB

Computational models for gene silencing in C. elegans

Animal Transcription Factor Database

AnimalTFDB is a comprehensive animal transcription factor database. The resource is classification of transcription factors from 50 genomes from species including Homo sapiens and Caenorhabditis elega ...

Yeast Searching for Transcriptional Regulators and Consensus Tracking

YEASTRACT (Yeast Search for Transcriptional Regulators And Consensus Tracking) is a curated repository of more than 48333 regulatory associations between transcription factors (TF) and target genes in ...