TFBSbank

BloodChIP

Transcription factor binding profiles in human haematopoietic stem/progenitor cells

TrSDB

Transcription factor database

HTPSELEX

Transcription factor binding site sequences obtained using high-throughput SELEX method

YeTFaSCo

Yeast Transcription Factor binding Site sequence Collection

ChIPBase

ChIPBase v2.0 is an open database for studying the transcription factor binding sites and motifs, and decoding the transcriptional regulatory networks of lncRNAs, miRNAs, other ncRNAs and protein-codi ...

SNP2TFBS

Regulatory SNPs affecting predicted transcription factor binding sites

PRODORIC2

DPRP

A database of phenotype-specific regulatory programs derived from transcription factor binding data

ChIP-Seq Transcription Factor Data

We developed a method, ChIP-sequencing (ChIP-seq), combining chromatin immunoprecipitation (ChIP) and massively parallel sequencing to identify mammalian DNA sequences bound by transcription factors i ...

OnTheFly

DNA-binding specificities of transcription factors in Drosophila

Gene Transcription Regulation Database

Gene Transcription Regulation Database (GTRD) is a database of transcription factor binding sites (TFBSs) identified by ChIP-seq experiments for human and mouse.

MachiBase

Drosophila melanogaster 5' mRNA transcription start site database

TTSMI

Triplex Target DNA Sites in the human genome

CollecTF

CollecTF is a database of transcription factor binding sites (TFBS) in the Bacteria domain. It aims at becoming a reference, highly-accessed database by relying on its ability to customize navigation ...

ESCDb

Database which collects human and mouse embryonic stem cell related datasets. These datasets cover perturbation (both knock-down and overexpression) and chromatin immunoprecipitation (ChIP) experiment ...

Saccharomyces cerevisiae Transcription Factor Database

ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics ...

CTCF Binding Site Database

Experimentally identified and predicted CTCF binding sties

CMGSDB

Computational models for gene silencing in C. elegans

RegPrecise

Predicted regulons in prokaryotic genomes