SNP2TFBS

Factorbook

Human transcription factor binding data from ChIP-seq

YeTFaSCo

Yeast Transcription Factor binding Site sequence Collection

TrSDB

Transcription factor database

PRODORIC2

DPRP

A database of phenotype-specific regulatory programs derived from transcription factor binding data

CollecTF

CollecTF is a database of transcription factor binding sites (TFBS) in the Bacteria domain. It aims at becoming a reference, highly-accessed database by relying on its ability to customize navigation ...

TFBSbank

Transcription factor binding profiles deduced from ChIP-seq or ChIP-chip data

BloodChIP

Transcription factor binding profiles in human haematopoietic stem/progenitor cells

OnTheFly

DNA-binding specificities of transcription factors in Drosophila

UCNEbase

A database of ultraconserved non-coding elements and gene regulatory blocks

RegPrecise

Predicted regulons in prokaryotic genomes

MachiBase

Drosophila melanogaster 5' mRNA transcription start site database

TTSMI

Triplex Target DNA Sites in the human genome

Gene Transcription Regulation Database

Gene Transcription Regulation Database (GTRD) is a database of transcription factor binding sites (TFBSs) identified by ChIP-seq experiments for human and mouse.

Regulatory Element Database for Drosophila

REDfly is a curated collection of known Drosophila transcriptional cis-regulatory modules (CRMs) and transcription factor binding sites (TFBSs). REDfly seeks to include all experimentally verified fly ...

CTCF Binding Site Database

Experimentally identified and predicted CTCF binding sties

Saccharomyces cerevisiae Transcription Factor Database

ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics ...

CMGSDB

Computational models for gene silencing in C. elegans

TESS

TESS (Transcription Element Search System, http://www.cbil.upenn.edu/tess) is a web-based service that searches DNA sequence for transcription factor binding sites. It integrates three databases of tr ...