TESS

SNP2TFBS

Regulatory SNPs affecting predicted transcription factor binding sites

Erythropoiesis Database

EpoDB (Erythropoiesis database) is a database of genes that relate to vertebrate red blood cells. It includes DNA sequence, structural features, protein information, gene expression information and tr ...

Factorbook

Human transcription factor binding data from ChIP-seq

OnTheFly

DNA-binding specificities of transcription factors in Drosophila

TrSDB

Transcription factor database

HTPSELEX

Transcription factor binding site sequences obtained using high-throughput SELEX method

Saccharomyces cerevisiae Transcription Factor Database

ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics ...

PRODORIC2

CollecTF

CollecTF is a database of transcription factor binding sites (TFBS) in the Bacteria domain. It aims at becoming a reference, highly-accessed database by relying on its ability to customize navigation ...

Gene Transcription Regulation Database

Gene Transcription Regulation Database (GTRD) is a database of transcription factor binding sites (TFBSs) identified by ChIP-seq experiments for human and mouse.

DPRP

A database of phenotype-specific regulatory programs derived from transcription factor binding data

TFBSbank

Transcription factor binding profiles deduced from ChIP-seq or ChIP-chip data

Regulatory Element Database for Drosophila

REDfly is a curated collection of known Drosophila transcriptional cis-regulatory modules (CRMs) and transcription factor binding sites (TFBSs). REDfly seeks to include all experimentally verified fly ...

BloodChIP

Transcription factor binding profiles in human haematopoietic stem/progenitor cells

CTCF Binding Site Database

Experimentally identified and predicted CTCF binding sties

MachiBase

Drosophila melanogaster 5' mRNA transcription start site database

FlyFactorSurvey

Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system

TTSMI

Triplex Target DNA Sites in the human genome

DBD

DBD provides transcription factor predictions for more than 150 completely sequenced genomes available for browsing and download. Predictions are based on presence of sequence specific DNA binding dom ...