BloodChIP

TrSDB

Transcription factor database

HTPSELEX

Transcription factor binding site sequences obtained using high-throughput SELEX method

Factorbook

Human transcription factor binding data from ChIP-seq

YeTFaSCo

Yeast Transcription Factor binding Site sequence Collection

SNP2TFBS

Regulatory SNPs affecting predicted transcription factor binding sites

PRODORIC2

DPRP

A database of phenotype-specific regulatory programs derived from transcription factor binding data

OnTheFly

DNA-binding specificities of transcription factors in Drosophila

MachiBase

Drosophila melanogaster 5' mRNA transcription start site database

TTSMI

Triplex Target DNA Sites in the human genome

Gene Transcription Regulation Database

Gene Transcription Regulation Database (GTRD) is a database of transcription factor binding sites (TFBSs) identified by ChIP-seq experiments for human and mouse.

CollecTF

CollecTF is a database of transcription factor binding sites (TFBS) in the Bacteria domain. It aims at becoming a reference, highly-accessed database by relying on its ability to customize navigation ...

Saccharomyces cerevisiae Transcription Factor Database

ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics ...

CMGSDB

Computational models for gene silencing in C. elegans

CTCF Binding Site Database

Experimentally identified and predicted CTCF binding sties

RegPrecise

Predicted regulons in prokaryotic genomes

Greglist

G-quadruplex motifs and potentially G-quadruplex regulated genes

PlantProm

Plant promoter sequences

FlyFactorSurvey

Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system