SCPD - Saccharomyces cerevisiae promoter database

CMGSDB

Computational models for gene silencing in C. elegans

PRODORIC2

TrSDB

Transcription factor database

YeTFaSCo

Yeast Transcription Factor binding Site sequence Collection

Factorbook

Human transcription factor binding data from ChIP-seq

TTSMI

Triplex Target DNA Sites in the human genome

OnTheFly

DNA-binding specificities of transcription factors in Drosophila

SNP2TFBS

Regulatory SNPs affecting predicted transcription factor binding sites

MachiBase

Drosophila melanogaster 5' mRNA transcription start site database

CTCF Binding Site Database

Experimentally identified and predicted CTCF binding sties

Saccharomyces cerevisiae Transcription Factor Database

ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics ...

PlantProm

Plant promoter sequences

DPRP

A database of phenotype-specific regulatory programs derived from transcription factor binding data

HTPSELEX

Transcription factor binding site sequences obtained using high-throughput SELEX method

YPA

YPA (Yeast Promoter Atlas) is a repository of promoter features in Saccharomyces cerevisiae. It intergrates various resources (including promoter sequences, TSSs, TATA boxes, TFBSs, nucleosome occupan ...

Yeast Searching for Transcriptional Regulators and Consensus Tracking

YEASTRACT (Yeast Search for Transcriptional Regulators And Consensus Tracking) is a curated repository of more than 48333 regulatory associations between transcription factors (TF) and target genes in ...

TFBSbank

Transcription factor binding profiles deduced from ChIP-seq or ChIP-chip data

yApoptosis

yeast apoptosis database

BloodChIP

Transcription factor binding profiles in human haematopoietic stem/progenitor cells