Distinct patterns of whole blood transcriptional responses are induced in mice following immunisation with adenoviral and poxviral vector vaccines encoding the same antigen.
PMID:34717548
Computational methods and next-generation sequencing approaches to analyze epigenetics data: Profiling of methods and applications.
PMID:32941995
Regulation of Cyclin E by transcription factors of the naïve pluripotency network in mouse embryonic stem cells.
PMID:31462142
Shifting Retroviral Vector Integrations Away from Transcriptional Start Sites via DNA-Binding Protein Domain Insertion into Integrase.
PMID:30534579
Epithelial RNase H2 Maintains Genome Integrity and Prevents Intestinal Tumorigenesis in Mice.
PMID:30273559
High-throughput transcriptomics reveals common and strain-specific responses of human macrophages to infection with Mycobacterium abscessus Smooth and Rough variants.
PMID:26654095
Characterization of human chromosomal material exchange with regard to the chromosome translocations using next-generation sequencing data.
PMID:25349267
Characterizing the Retinoblastoma 1 locus: putative elements for Rb1 regulation by in silico analysis.
PMID:24478791
TNFα-mediated Hsd11b1 binding of NF-κB p65 is associated with suppression of 11β-HSD1 in muscle.
PMID:24413279
Novel factors in the pathogenesis of psoriasis and potential drug candidates are found with systems biology approach.
PMID:24303025
New insights in osteogenic differentiation revealed by mass spectrometric assessment of phosphorylated substrates in murine skin mesenchymal cells.
PMID:24148232
Nencki Genomics Database--Ensembl funcgen enhanced with intersections, user data and genome-wide TFBS motifs.
PMID:24089456
TBCK influences cell proliferation, cell size and mTOR signaling pathway.
PMID:23977024
Genome-wide analysis of H4K5 acetylation associated with fear memory in mice.
PMID:23927422
TdIF1 recognizes a specific DNA sequence through its Helix-Turn-Helix and AT-hook motifs to regulate gene transcription.
PMID:23874396
Interferon-beta therapy in multiple sclerosis: the short-term and long-term effects on the patients' individual gene expression in peripheral blood.
PMID:23636981
Importance of different types of prior knowledge in selecting genome-wide findings for follow-up.
PMID:23307621
Functional characterization of motif sequences under purifying selection.
PMID:23303791
Ensembl 2013.
PMID:23203987
Transcriptional regulation of the Ufm1 conjugation system in response to disturbance of the endoplasmic reticulum homeostasis and inhibition of vesicle trafficking.
PMID:23152784
Statistical approaches to use a model organism for regulatory sequences annotation of newly sequenced species.
PMID:22984403
GW8510 increases insulin expression in pancreatic alpha cells through activation of p53 transcriptional activity.
PMID:22242153
cAMP response element-binding protein is a primary hub of activity-driven neuronal gene expression.
PMID:22171029
Large-scale motif discovery using DNA Gray code and equiprobable oligomers.
PMID:22057160
Simple Shared Motifs (SSM) in conserved region of promoters: a new approach to identify co-regulation patterns.
PMID:21910886
The regulatory epicenter of miRNAs.
PMID:21857109
The differential disease regulome.
PMID:21736759
TAFFEL: Independent Enrichment Analysis of gene sets.
PMID:21592412
Preferential regulation of miRNA targets by environmental chemicals in the human genome.
PMID:21592377
LLM3D: a log-linear modeling-based method to predict functional gene regulatory interactions from genome-wide expression data.
PMID:21422075
Predicting functionally important SNP classes based on negative selection.
PMID:21247465
NGSmethDB: a database for next-generation sequencing single-cytosine-resolution DNA methylation data.
PMID:20965971
The early whole-blood transcriptional signature of dengue virus and features associated with progression to dengue shock syndrome in Vietnamese children and young adults.
PMID:20943967
Genomic features of the human dopamine transporter gene and its potential epigenetic States: implications for phenotypic diversity.
PMID:20548783
Touring Ensembl: a practical guide to genome browsing.
PMID:20459808
Identification and characterization of putative methylation targets in the MAOA locus using bioinformatic approaches.
PMID:20421737
Contrasting genetic paths to morphological and physiological evolution.
PMID:20368429
Transcription factor site dependencies in human, mouse and rat genomes.
PMID:19835596
Effect of dietary calcium and dairy proteins on the adipose tissue gene expression profile in diet-induced obesity.
PMID:19776631
DoOPSearch: a web-based tool for finding and analysing common conserved motifs in the promoter regions of different chordate and plant genes.
PMID:19534755
Caenorhabditis elegans cisRED: a catalogue of conserved genomic elements.
PMID:19151087
A miRNA signature of prion induced neurodegeneration.
PMID:18987751
Identification of transcripts with enriched expression in the developing and adult pancreas.
PMID:18554416
Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments.
PMID:18515841
The Innate Immune Database (IIDB).
PMID:18321385
DBD--taxonomically broad transcription factor predictions: new content and functionality.
PMID:18073188
TFCONES: a database of vertebrate transcription factor-encoding genes and their associated conserved noncoding elements.
PMID:18045502
ORegAnno: an open-access community-driven resource for regulatory annotation.
PMID:18006570
Genome-wide investigation reveals pathogen-specific and shared signatures in the response of Caenorhabditis elegans to infection.
PMID:17875205
FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments.
PMID:17478504
From genes to functional classes in the study of biological systems.
PMID:17407596
Large-scale discovery of promoter motifs in Drosophila melanogaster.
PMID:17238282
Tissue-specific regulatory elements in mammalian promoters.
PMID:17224917
PReMod: a database of genome-wide mammalian cis-regulatory module predictions.
PMID:17148480
VISTA Enhancer Browser--a database of tissue-specific human enhancers.
PMID:17130149
BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments.
PMID:16845052
Transcription factor map alignment of promoter regions.
PMID:16733547
Practical strategies for discovering regulatory DNA sequence motifs.
PMID:16683017
Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression.
PMID:16606704