SwissRegulon
Names
More detailed information about this field from each metasource.
SwissRegulon
metasource: Fairsharing.org
version: FAIRsharing.org: SwissRegulon; SwissRegulon; DOI: https://doi.org/10.25504/FAIRsharing.7fnx38; Last edited: Jan. 10, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:11.947582
swissregulon
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:11.947582
Names
More detailed information about this field from each metasource.
SwissRegulon
metasource: Fairsharing.orgversion: FAIRsharing.org: SwissRegulon; SwissRegulon; DOI: https://doi.org/10.25504/FAIRsharing.7fnx38; Last edited: Jan. 10, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:11.947582
swissregulon
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:11.947582
Names
More detailed information about this field from each metasource.
SwissRegulon
metasource: Fairsharing.orgversion: FAIRsharing.org: SwissRegulon; SwissRegulon; DOI: https://doi.org/10.25504/FAIRsharing.7fnx38; Last edited: Jan. 10, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:11.947582
swissregulon
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:11.947582
The Swissregulon Database contains genome-wide annotations of regulatory sites. The predictions are based on Bayesian probabilistic analysis of a combination of input information including i) Experimentally determined binding sites reported in the literature, ii) Known sequence-specificities of transcription factors, iii) ChIP-chip and ChIP-seq data, iiii) Alignments of orthologous non-coding regions.
Description
More detailed information about this field from each metasource.
The Swissregulon Database contains genome-wide annotations of regulatory sites. The predictions are based on Bayesian probabilistic analysis of a combination of input information including i) Experimentally determined binding sites reported in the literature, ii) Known sequence-specificities of transcription factors, iii) ChIP-chip and ChIP-seq data, iiii) Alignments of orthologous non-coding regions.
metasource: Fairsharing.orgversion: FAIRsharing.org: SwissRegulon; SwissRegulon; DOI: https://doi.org/10.25504/FAIRsharing.7fnx38; Last edited: Jan. 10, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
SwissRegulon (http://www.swissregulon.unibas.ch) is a database containing genome-wide annotations of regulatory sites in the intergenic regions of genomes. The regulatory site annotations are produced using a number of recently developed algorithms that operate on multiple alignments of orthologous intergenic regions from related genomes in combination with, whenever available, known sites from the literature, and ChIP-on-chip binding data. Currently SwissRegulon contains annotations for yeast and 17 prokaryotic genomes. The database provides information about the sequence, location, orientation, posterior probability and, whenever available, binding factor for each annotated site. To enable easy viewing of the regulatory site annotations in the context of other features annotated on the genomes, the sites are displayed using the GBrowse genome browser interface and can be queried based on any annotated genomic feature. The database can also be queried for regulons, i.e. sites bound by a common factor.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
SwissRegulon is a database of genome-wide annotations of regulatory sites. It contains annotations for 17 prokaryotes and 3 eukaryotes. The database frontend offers an intuitive interface showing genomic information in a clear and comprehensible graphical form.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:11.947582
Webpage:
http://swissregulon.unibas.ch/sr/Webpage
More detailed information about this field from each metasource.
http://swissregulon.unibas.ch/sr/
metasource: Fairsharing.orgversion: FAIRsharing.org: SwissRegulon; SwissRegulon; DOI: https://doi.org/10.25504/FAIRsharing.7fnx38; Last edited: Jan. 10, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:11.947582
http://www.swissregulon.unibas.ch/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Publications:
Publications
More detailed information about this field from each metasource.
SwissRegulon: a database of genome-wide annotations of regulatory sites
PMID: 17130146
metasource: Fairsharing.org
version: FAIRsharing.org: SwissRegulon; SwissRegulon; DOI: https://doi.org/10.25504/FAIRsharing.7fnx38; Last edited: Jan. 10, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates
PMID: 23180783
metasource: Fairsharing.org
version: FAIRsharing.org: SwissRegulon; SwissRegulon; DOI: https://doi.org/10.25504/FAIRsharing.7fnx38; Last edited: Jan. 10, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://dx.doi.org/10.1093/nar/gks1145
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:11.947582
Publications
More detailed information about this field from each metasource.
SwissRegulon: a database of genome-wide annotations of regulatory sites
PMID: 17130146
metasource: Fairsharing.org
version: FAIRsharing.org: SwissRegulon; SwissRegulon; DOI: https://doi.org/10.25504/FAIRsharing.7fnx38; Last edited: Jan. 10, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates
PMID: 23180783
metasource: Fairsharing.org
version: FAIRsharing.org: SwissRegulon; SwissRegulon; DOI: https://doi.org/10.25504/FAIRsharing.7fnx38; Last edited: Jan. 10, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://dx.doi.org/10.1093/nar/gks1145
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:11.947582
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SwissRegulon: a database of genome-wide annotations of regulatory sites
PubMed citations: 81.
81 articles citing: SwissRegulon: a database of genome-wide annotations of regulatory sites
Single-cell roadmap of human gonadal development. PMID:35794482
Binding of the HSF-1 DNA-binding domain to multimeric C. elegans consensus HSEs is guided by cooperative interactions. PMID:35643773
Transcription factor specificity limits the number of DNA-binding motifs. PMID:35089985
Glucose starvation induces a switch in the histone acetylome for activation of gluconeogenic and fat metabolism genes. PMID:34995509
Regulation of transcription reactivation dynamics exiting mitosis. PMID:34606497
Transcriptomic time-series analysis of cold- and heat-shock response in psychrotrophic lactic acid bacteria. PMID:33413101
A Systematic Analysis Revealed the Potential Gene Regulatory Processes of ATRA-Triggered Neuroblastoma Differentiation and Identified a Novel RA Response Sequence in the NTRK2 Gene. PMID:32149119
Stable enhancers are active in development, and fragile enhancers are associated with evolutionary adaptation. PMID:31307522
Transcriptomic analysis of the oleaginous yeast Lipomyces starkeyi during lipid accumulation on enzymatically treated corn stover hydrolysate. PMID:31289462
Molecular Origins of Complex Heritability in Natural Genotype-to-Phenotype Relationships. PMID:31054809
Reproducible big data science: A case study in continuous FAIRness. PMID:30973881
Escherichia coli Lrp Regulates One-Third of the Genome via Direct, Cooperative, and Indirect Routes. PMID:30420454
Impaired Notch Signaling Leads to a Decrease in p53 Activity and Mitotic Catastrophe in Aged Muscle Stem Cells. PMID:30244867
Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context. PMID:29617668
Clock-dependent chromatin topology modulates circadian transcription and behavior. PMID:29572261
Transcription factor activity rhythms and tissue-specific chromatin interactions explain circadian gene expression across organs. PMID:29254942
Interferon Receptor Signaling Pathways Regulating PD-L1 and PD-L2 Expression. PMID:28494868
TFAP2A is a component of the ZEB1/2 network that regulates TGFB1-induced epithelial to mesenchymal transition. PMID:28412966
Layer-specific chromatin accessibility landscapes reveal regulatory networks in adult mouse visual cortex. PMID:28112643
Identification of Novel Nuclear Factor of Activated T Cell (NFAT)-associated Proteins in T Cells. PMID:27637333
Characterisation of the global transcriptional response to heat shock and the impact of individual genetic variation. PMID:27553423
The tumor microenvironment underlies acquired resistance to CSF-1R inhibition in gliomas. PMID:27199435
Analysis of Genomic Sequence Motifs for Deciphering Transcription Factor Binding and Transcriptional Regulation in Eukaryotic Cells. PMID:26941778
ePIANNO: ePIgenomics ANNOtation tool. PMID:26859295
Combined deletion of cathepsin protease family members reveals compensatory mechanisms in cancer. PMID:26773004
Mapping Mammalian Cell-type-specific Transcriptional Regulatory Networks Using KD-CAGE and ChIP-seq Data in the TC-YIK Cell Line. PMID:26635867
Transcriptional Dynamics Driving MAMP-Triggered Immunity and Pathogen Effector-Mediated Immunosuppression in Arabidopsis Leaves Following Infection with Pseudomonas syringae pv tomato DC3000. PMID:26566919
Circadian mRNA expression: insights from modeling and transcriptomics. PMID:26496725
Increased metastasis with loss of E2F2 in Myc-driven tumors. PMID:26474282
Frequent down-regulation of ABC transporter genes in prostate cancer. PMID:26459268
Reconstruction of novel transcription factor regulons through inference of their binding sites. PMID:26388177
Gains and Losses of Transcription Factor Binding Sites in Saccharomyces cerevisiae and Saccharomyces paradoxus. PMID:26220934
Decoupling of divergent gene regulation by sequence-specific DNA binding factors. PMID:26082499
A regulatory similarity measure using the location information of transcription factor binding sites in Saccharomyces cerevisiae. PMID:25560196
Identifying cooperative transcription factors in yeast using multiple data sources. PMID:25559499
Cardiovascular transcriptomics and epigenomics using next-generation sequencing: challenges, progress, and opportunities. PMID:25518043
ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs. PMID:24515121
A new exhaustive method and strategy for finding motifs in ChIP-enriched regions. PMID:24475069
Temporal dynamics and transcriptional control using single-cell gene expression analysis. PMID:24156252
Mot1 redistributes TBP from TATA-containing to TATA-less promoters. PMID:24144978
Mapping yeast transcriptional networks. PMID:24018767
Massively parallel synthetic promoter assays reveal the in vivo effects of binding site variants. PMID:23921661
Skeletal muscle PGC-1α controls whole-body lactate homeostasis through estrogen-related receptor α-dependent activation of LDH B and repression of LDH A. PMID:23650363
Interferon-beta therapy in multiple sclerosis: the short-term and long-term effects on the patients' individual gene expression in peripheral blood. PMID:23636981
RegTransBase--a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes. PMID:23547897
Regulation of cation balance in Saccharomyces cerevisiae. PMID:23463800
EPD and EPDnew, high-quality promoter resources in the next-generation sequencing era. PMID:23193273
SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates. PMID:23180783
Overlapping ETS and CRE Motifs ((G/C)CGGAAGTGACGTCA) preferentially bound by GABPα and CREB proteins. PMID:23050235
ncDNA and drift drive binding site accumulation. PMID:22935101
HTRIdb: an open-access database for experimentally verified human transcriptional regulation interactions. PMID:22900683
Reconstruction of monocyte transcriptional regulatory network accompanies monocytic functions in human fibroblasts. PMID:22428058
Contribution of transcription factor binding site motif variants to condition-specific gene expression patterns in budding yeast. PMID:22384202
Cellular noise regulons underlie fluctuations in Saccharomyces cerevisiae. PMID:22365828
Identification of co-occurring transcription factor binding sites from DNA sequence using clustered position weight matrices. PMID:22187154
ScerTF: a comprehensive database of benchmarked position weight matrices for Saccharomyces species. PMID:22140105
YeTFaSCo: a database of evaluated yeast transcription factor sequence specificities. PMID:22102575
Formation of regulatory modules by local sequence duplication. PMID:21998564
Identification of genetic elements that autonomously determine DNA methylation states. PMID:21964573
Transcription factor binding site positioning in yeast: proximal promoter motifs characterize TATA-less promoters. PMID:21931670
Enhancers regulate progression of development in mammalian cells. PMID:21785139
PromBase: a web resource for various genomic features and predicted promoters in prokaryotic genomes. PMID:21781326
Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation. PMID:21075797
YPA: an integrated repository of promoter features in Saccharomyces cerevisiae. PMID:21045055
Integrated quantitative analysis of the phosphoproteome and transcriptome in tamoxifen-resistant breast cancer. PMID:21044952
The spatial distribution of cis regulatory elements in yeast promoters and its implications for transcriptional regulation. PMID:20958978
De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis. PMID:20802496
MochiView: versatile software for genome browsing and DNA motif analysis. PMID:20409324
Characterizing regulatory path motifs in integrated networks using perturbational data. PMID:20230615
JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles. PMID:19906716
Regulation of clock-controlled genes in mammals. PMID:19287494
The functional importance of telomere clustering: global changes in gene expression result from SIR factor dispersion. PMID:19179643
Network integration and graph analysis in mammalian molecular systems biology. PMID:19045817
PRODORIC (release 2009): a database and tool platform for the analysis of gene regulation in prokaryotes. PMID:18974177
Energy-dependent fitness: a quantitative model for the evolution of yeast transcription factor binding sites. PMID:18723669
Roles of cis- and trans-changes in the regulatory evolution of genes in the gluconeogenic pathway in yeast. PMID:18573843
ProdoNet: identification and visualization of prokaryotic gene regulatory and metabolic networks. PMID:18440972
A systems approach to delineate functions of paralogous transcription factors: role of the Yap family in the DNA damage response. PMID:18287073
Computational methods to dissect cis-regulatory transcriptional networks. PMID:18202457
Controlled exchange of chromosomal arms reveals principles driving telomere interactions in yeast. PMID:18096749
MYBS: a comprehensive web server for mining transcription factor binding sites in yeast. PMID:17537814 -
SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates
PubMed citations: 74.
74 articles citing: SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates
Comparative genomic analysis of the human genome and six bat genomes using unsupervised machine learning: Mb-level CpG and TFBS islands. PMID:35804296
FABIAN-variant: predicting the effects of DNA variants on transcription factor binding. PMID:35639768
Promoter hypermethylation of GALR1 acts as an early epigenetic susceptibility event in colorectal carcinogenesis. PMID:35606503
Genome interpretation using in silico predictors of variant impact. PMID:35488922
Identification of potential functional variants and genes at 18q21.1 associated with the carcinogenesis of colorectal cancer. PMID:35108261
Transcription factor specificity limits the number of DNA-binding motifs. PMID:35089985
Enhancer RNA Expression in Response to Glucocorticoid Treatment in Murine Macrophages. PMID:35011590
Interrogating cell type-specific cooperation of transcriptional regulators in 3D chromatin. PMID:34888502
proChIPdb: a chromatin immunoprecipitation database for prokaryotic organisms. PMID:34791440
Genetic variants in histone modification regions are associated with the prognosis of lung adenocarcinoma. PMID:34728688
Transcription factors Krüppel-like factor 4 and paired box 5 regulate the expression of the Grainyhead-like genes. PMID:34570823
Scaffold attachment factor B1 regulates androgen degradation pathways in prostate cancer. PMID:34541032
Uncovering Transcriptional Regulators and Targets of sRNAs Using an Integrative Data-Mining Approach: H-NS-Regulated RseX as a Case Study. PMID:34327153
Dynamic landscape of protein occupancy across the Escherichia coli chromosome. PMID:34170902
Comparative genomics of Glandirana rugosa using unsupervised AI reveals a high CG frequency. PMID:33712508
High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes. PMID:33579201
LETR1 is a lymphatic endothelial-specific lncRNA governing cell proliferation and migration through KLF4 and SEMA3C. PMID:33568674
The glucocorticoid receptor recruits the COMPASS complex to regulate inflammatory transcription at macrophage enhancers. PMID:33567280
FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs. PMID:33211864
Dedifferentiation and neuronal repression define familial Alzheimer's disease. PMID:33188013
Exploring functionally annotated transcriptional consensus regulatory elements with CONREL. PMID:33186463
Mitochondrial gene signature in the prefrontal cortex for differential susceptibility to chronic stress. PMID:33110158
Long Noncoding RNA OIP5-AS1 Promotes Cell Apoptosis and Cataract Formation by Blocking POLG Expression Under Oxidative Stress. PMID:33006594
Multiomics dissection of molecular regulatory mechanisms underlying autoimmune-associated noncoding SNPs. PMID:32879140
ABC-GWAS: Functional Annotation of Estrogen Receptor-Positive Breast Cancer Genetic Variants. PMID:32765587
Comparative transcriptomics of primary cells in vertebrates. PMID:32718981
Abasy Atlas v2.2: The most comprehensive and up-to-date inventory of meta-curated, historical, bacterial regulatory networks, their completeness and system-level characterization. PMID:32542109
A Systematic Analysis Revealed the Potential Gene Regulatory Processes of ATRA-Triggered Neuroblastoma Differentiation and Identified a Novel RA Response Sequence in the NTRK2 Gene. PMID:32149119
Single-Cell RNA Sequencing of Plant-Associated Bacterial Communities. PMID:31736899
Crunch: integrated processing and modeling of ChIP-seq data in terms of regulatory motifs. PMID:31138617
PanglaoDB: a web server for exploration of mouse and human single-cell RNA sequencing data. PMID:30951143
Canonical and single-cell Hi-C reveal distinct chromatin interaction sub-networks of mammalian transcription factors. PMID:30359306
The Mouse Microbiome Is Required for Sex-Specific Diurnal Rhythms of Gene Expression and Metabolism. PMID:30344015
Genome-Wide Association and Mechanistic Studies Indicate That Immune Response Contributes to Alzheimer's Disease Development. PMID:30319691
Spt6 Is Required for the Fidelity of Promoter Selection. PMID:30318445
Functional Genetic Variants Revealed by Massively Parallel Precise Genome Editing. PMID:30245013
Promoter Usage and Dynamics in Vascular Smooth Muscle Cells Exposed to Fibroblast Growth Factor-2 or Interleukin-1β. PMID:30177712
Disentangling transcription factor binding site complexity. PMID:30085218
GIGSEA: genotype imputed gene set enrichment analysis using GWAS summary level data. PMID:30010968
Human Enhancers Harboring Specific Sequence Composition, Activity, and Genome Organization Are Linked to the Immune Response. PMID:29871881
An Osteoporosis Risk SNP at 1p36.12 Acts as an Allele-Specific Enhancer to Modulate LINC00339 Expression via Long-Range Loop Formation. PMID:29706346
Transcriptomic analyses reveal rhythmic and CLOCK-driven pathways in human skeletal muscle. PMID:29658882
Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes. PMID:29563166
SNPDelScore: combining multiple methods to score deleterious effects of noncoding mutations in the human genome. PMID:28968739
An integrated expression atlas of miRNAs and their promoters in human and mouse. PMID:28829439
GeneHancer: genome-wide integration of enhancers and target genes in GeneCards. PMID:28605766
Fast, scalable prediction of deleterious noncoding variants from functional and population genomic data. PMID:28288115
Genome-Wide Transcriptional Start Site Mapping and sRNA Identification in the Pathogen Leptospira interrogans. PMID:28154810
Layer-specific chromatin accessibility landscapes reveal regulatory networks in adult mouse visual cortex. PMID:28112643
Paracrine cross-talk between skeletal muscle and macrophages in exercise by PGC-1α-controlled BNP. PMID:28091624
A childhood acute lymphoblastic leukemia genome-wide association study identifies novel sex-specific risk variants. PMID:27861356
Bayesian Markov models consistently outperform PWMs at predicting motifs in nucleotide sequences. PMID:27288444
The Genomic Context and Corecruitment of SP1 Affect ERRα Coactivation by PGC-1α in Muscle Cells. PMID:27182621
Skeletal muscle PGC-1α modulates systemic ketone body homeostasis and ameliorates diabetic hyperketonemia in mice. PMID:26849960
Transcriptome Analysis of Targeted Mouse Mutations Reveals the Topography of Local Changes in Gene Expression. PMID:26839965
The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases. PMID:26615188
Changes in the enhancer landscape during early placental development uncover a trophoblast invasion gene-enhancer network. PMID:26604129
HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. PMID:26586801
Reliable scaling of position weight matrices for binding strength comparisons between transcription factors. PMID:26289072
Databases for Microbiologists. PMID:26013493
Optimally choosing PWM motif databases and sequence scanning approaches based on ChIP-seq data. PMID:25927199
CAGE-defined promoter regions of the genes implicated in Rett Syndrome. PMID:25539566
Molecular dissection of the genetic mechanisms that underlie expression conservation in orthologous yeast ribosomal promoters. PMID:25294245
iRegulon: from a gene list to a gene regulatory network using large motif and track collections. PMID:25058159
Probing the effect of promoters on noise in gene expression using thousands of designed sequences. PMID:25030889
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support. PMID:24792157
TACO: a general-purpose tool for predicting cell-type-specific transcription factor dimers. PMID:24640962
Molecular adaptations of striatal spiny projection neurons during levodopa-induced dyskinesia. PMID:24599591
Pegylated IFN-α regulates hepatic gene expression through transient Jak/STAT activation. PMID:24569457
Computational modeling identifies key gene regulatory interactions underlying phenobarbital-mediated tumor promotion. PMID:24464994
Identifying functional transcription factor binding sites in yeast by considering their positional preference in the promoters. PMID:24386279
Temporal dynamics and transcriptional control using single-cell gene expression analysis. PMID:24156252
Cataloging the biomedical world of pain through semi-automated curation of molecular interactions. PMID:23707966
The 2013 Nucleic Acids Research Database Issue and the online molecular biology database collection. PMID:23203983 - http://dx.doi.org/10.1093/nar/gks1145
Tags:
Tags
More detailed information about this field from each metasource.
binding site
metasource: Fairsharing.org
version: FAIRsharing.org: SwissRegulon; SwissRegulon; DOI: https://doi.org/10.25504/FAIRsharing.7fnx38; Last edited: Jan. 10, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
chromatin immunoprecipitation - dna microarray
metasource: Fairsharing.org
version: FAIRsharing.org: SwissRegulon; SwissRegulon; DOI: https://doi.org/10.25504/FAIRsharing.7fnx38; Last edited: Jan. 10, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
chromatin immunoprecipitation - dna sequencing
metasource: Fairsharing.org
version: FAIRsharing.org: SwissRegulon; SwissRegulon; DOI: https://doi.org/10.25504/FAIRsharing.7fnx38; Last edited: Jan. 10, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene regulatory element
metasource: Fairsharing.org
version: FAIRsharing.org: SwissRegulon; SwissRegulon; DOI: https://doi.org/10.25504/FAIRsharing.7fnx38; Last edited: Jan. 10, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
genome annotation
metasource: Fairsharing.org
version: FAIRsharing.org: SwissRegulon; SwissRegulon; DOI: https://doi.org/10.25504/FAIRsharing.7fnx38; Last edited: Jan. 10, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
literature curation
metasource: Fairsharing.org
version: FAIRsharing.org: SwissRegulon; SwissRegulon; DOI: https://doi.org/10.25504/FAIRsharing.7fnx38; Last edited: Jan. 10, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein binding site prediction
metasource: Fairsharing.org
version: FAIRsharing.org: SwissRegulon; SwissRegulon; DOI: https://doi.org/10.25504/FAIRsharing.7fnx38; Last edited: Jan. 10, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
regulatory region
metasource: Fairsharing.org
version: FAIRsharing.org: SwissRegulon; SwissRegulon; DOI: https://doi.org/10.25504/FAIRsharing.7fnx38; Last edited: Jan. 10, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
transcription factor
metasource: Fairsharing.org
version: FAIRsharing.org: SwissRegulon; SwissRegulon; DOI: https://doi.org/10.25504/FAIRsharing.7fnx38; Last edited: Jan. 10, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
nucleotide sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
transcriptional regulator sites and transcription factors
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
genomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:11.947582
systems biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:11.947582
sequence analysis
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:11.947582
transcription factors and regulatory sites
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:11.947582
gene transcripts
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:11.947582
Tags
More detailed information about this field from each metasource.
binding site
metasource: Fairsharing.orgversion: FAIRsharing.org: SwissRegulon; SwissRegulon; DOI: https://doi.org/10.25504/FAIRsharing.7fnx38; Last edited: Jan. 10, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
chromatin immunoprecipitation - dna microarray
metasource: Fairsharing.orgversion: FAIRsharing.org: SwissRegulon; SwissRegulon; DOI: https://doi.org/10.25504/FAIRsharing.7fnx38; Last edited: Jan. 10, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
chromatin immunoprecipitation - dna sequencing
metasource: Fairsharing.orgversion: FAIRsharing.org: SwissRegulon; SwissRegulon; DOI: https://doi.org/10.25504/FAIRsharing.7fnx38; Last edited: Jan. 10, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene regulatory element
metasource: Fairsharing.orgversion: FAIRsharing.org: SwissRegulon; SwissRegulon; DOI: https://doi.org/10.25504/FAIRsharing.7fnx38; Last edited: Jan. 10, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
genome annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: SwissRegulon; SwissRegulon; DOI: https://doi.org/10.25504/FAIRsharing.7fnx38; Last edited: Jan. 10, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
literature curation
metasource: Fairsharing.orgversion: FAIRsharing.org: SwissRegulon; SwissRegulon; DOI: https://doi.org/10.25504/FAIRsharing.7fnx38; Last edited: Jan. 10, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein binding site prediction
metasource: Fairsharing.orgversion: FAIRsharing.org: SwissRegulon; SwissRegulon; DOI: https://doi.org/10.25504/FAIRsharing.7fnx38; Last edited: Jan. 10, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
regulatory region
metasource: Fairsharing.orgversion: FAIRsharing.org: SwissRegulon; SwissRegulon; DOI: https://doi.org/10.25504/FAIRsharing.7fnx38; Last edited: Jan. 10, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
transcription factor
metasource: Fairsharing.orgversion: FAIRsharing.org: SwissRegulon; SwissRegulon; DOI: https://doi.org/10.25504/FAIRsharing.7fnx38; Last edited: Jan. 10, 2019, 1:43 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
nucleotide sequence databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
transcriptional regulator sites and transcription factors
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
genomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:11.947582
systems biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:11.947582
sequence analysis
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:11.947582
transcription factors and regulatory sites
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:11.947582
gene transcripts
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:11.947582
binding site chromatin immunoprecipitation - dna microarray chromatin immunoprecipitation - dna sequencing gene regulatory element genome annotation literature curation protein binding site prediction regulatory region transcription nucleic acid sequence transcription genomics systems biology sequence analysis transcription factors and regulatory sites gene transcripts
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