MAPPER-2
Names
More detailed information about this field from each metasource.
MAPPER-2
metasource: Fairsharing.org
version: FAIRsharing.org: mapperdb; MAPPER-2; DOI: https://doi.org/10.25504/FAIRsharing.1ex4pm; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
mapperdb
metasource: Fairsharing.org
version: FAIRsharing.org: mapperdb; MAPPER-2; DOI: https://doi.org/10.25504/FAIRsharing.1ex4pm; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
MAPPER
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
MAPPER-2
metasource: Fairsharing.orgversion: FAIRsharing.org: mapperdb; MAPPER-2; DOI: https://doi.org/10.25504/FAIRsharing.1ex4pm; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
mapperdb
metasource: Fairsharing.orgversion: FAIRsharing.org: mapperdb; MAPPER-2; DOI: https://doi.org/10.25504/FAIRsharing.1ex4pm; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
MAPPER
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
MAPPER-2
metasource: Fairsharing.orgversion: FAIRsharing.org: mapperdb; MAPPER-2; DOI: https://doi.org/10.25504/FAIRsharing.1ex4pm; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
mapperdb
metasource: Fairsharing.orgversion: FAIRsharing.org: mapperdb; MAPPER-2; DOI: https://doi.org/10.25504/FAIRsharing.1ex4pm; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
MAPPER
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
This source may no longer be available. No known URL could be resolved successfully.
This resource provides information primarily on the upstream non-coding sequence data of genes in 3 genomes which gives insight into the transcription factors binding sites (TFBSs). For each transcript, the region scanned extends from 10,000bp upstream of the transcript start to 50bp downstream of the coding sequence start. Therefore, the database contains putative binding sites in the gene promoter and in the initial introns and non-coding exons. Information displayed for each putative binding site includes the transcription factor name, its position (absolute on the chromosome, or relative to the gene), the score of the prediction, and the region of the gene the site belongs to. If the selected gene has homologs in any of the other two organisms, the program optionally displays the putative TFBSs in the homologs.
Description
More detailed information about this field from each metasource.
This resource provides information primarily on the upstream non-coding sequence data of genes in 3 genomes which gives insight into the transcription factors binding sites (TFBSs). For each transcript, the region scanned extends from 10,000bp upstream of the transcript start to 50bp downstream of the coding sequence start. Therefore, the database contains putative binding sites in the gene promoter and in the initial introns and non-coding exons. Information displayed for each putative binding site includes the transcription factor name, its position (absolute on the chromosome, or relative to the gene), the score of the prediction, and the region of the gene the site belongs to. If the selected gene has homologs in any of the other two organisms, the program optionally displays the putative TFBSs in the homologs.
metasource: Fairsharing.orgversion: FAIRsharing.org: mapperdb; MAPPER-2; DOI: https://doi.org/10.25504/FAIRsharing.1ex4pm; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Putative transcription factor binding sites in various genomes
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
http://genome.ufl.edu/mapperdbWebpage
More detailed information about this field from each metasource.
http://genome.ufl.edu/mapperdb
metasource: Fairsharing.orgversion: FAIRsharing.org: mapperdb; MAPPER-2; DOI: https://doi.org/10.25504/FAIRsharing.1ex4pm; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://genome.ufl.edu/mapperdb/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Publications:
Publications
More detailed information about this field from each metasource.
MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes
PMID: 15799782
metasource: Fairsharing.org
version: FAIRsharing.org: mapperdb; MAPPER-2; DOI: https://doi.org/10.25504/FAIRsharing.1ex4pm; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
The MAPPER database: a multi-genome catalog of putative transcription factor binding sites
PMID: 15608292
metasource: Fairsharing.org
version: FAIRsharing.org: mapperdb; MAPPER-2; DOI: https://doi.org/10.25504/FAIRsharing.1ex4pm; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications
More detailed information about this field from each metasource.
MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes
PMID: 15799782
metasource: Fairsharing.org
version: FAIRsharing.org: mapperdb; MAPPER-2; DOI: https://doi.org/10.25504/FAIRsharing.1ex4pm; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
The MAPPER database: a multi-genome catalog of putative transcription factor binding sites
PMID: 15608292
metasource: Fairsharing.org
version: FAIRsharing.org: mapperdb; MAPPER-2; DOI: https://doi.org/10.25504/FAIRsharing.1ex4pm; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
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MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes
PubMed citations: 106.
106 articles citing: MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes
CiiiDER: A tool for predicting and analysing transcription factor binding sites. PMID:31483836
Allele specific chromatin signals, 3D interactions, and motif predictions for immune and B cell related diseases. PMID:30804403
Myocyte enhancer factor-2 and p300 interact to regulate the expression of homeostatic regulator Pumilio in Drosophila. PMID:30687963
Dempster-Shafer Theory for the Prediction of Auxin-Response Elements (AuxREs) in Plant Genomes. PMID:30515394
p53 positively regulates the expression of cancer stem cell marker CD133 in HCT116 colon cancer cells. PMID:29928431
Drosophila Model for the Analysis of Genesis of LIM-kinase 1-Dependent Williams-Beuren Syndrome Cognitive Phenotypes: INDELs, Transposable Elements of the Tc1/Mariner Superfamily and MicroRNAs. PMID:28979292
1,25D3 differentially suppresses bladder cancer cell migration and invasion through the induction of miR-101-3p. PMID:28947955
A microRNA signature of response to erlotinib is descriptive of TGFβ behaviour in NSCLC. PMID:28646226
SNPs in microRNA target sites and their potential role in human disease. PMID:28381629
The pseudokinase MLKL mediates programmed hepatocellular necrosis independently of RIPK3 during hepatitis. PMID:27756058
CLOCK gene variation is associated with incidence of type-2 diabetes and cardiovascular diseases in type-2 diabetic subjects: dietary modulation in the PREDIMED randomized trial. PMID:26739996
Inhibition of ERRα suppresses epithelial mesenchymal transition of triple negative breast cancer cells by directly targeting fibronectin. PMID:26160845
Nuclear respiratory factor 2 induces SIRT3 expression. PMID:26109058
Chronic morphine-induced microRNA-124 promotes microglial immunosuppression by modulating P65 and TRAF6. PMID:25539811
Enhanced transgene expression from recombinant single-stranded D-sequence-substituted adeno-associated virus vectors in human cell lines in vitro and in murine hepatocytes in vivo. PMID:25355884
Genome-wide association study of breast cancer in Latinas identifies novel protective variants on 6q25. PMID:25327703
Congenital methemoglobinemia in a dog with a promoter deletion and a nonsynonymous coding variant in the gene encoding cytochrome b₅. PMID:25145387
Sox17 inhibits hepatocellular carcinoma progression by downregulation of KIF14 expression. PMID:25106407
Mechanisms of interferon-γ production by neutrophils and its function during Streptococcus pneumoniae pneumonia. PMID:25100610
Epigenetic silencing of EYA2 in pancreatic adenocarcinomas promotes tumor growth. PMID:24810906
A genetic variant in the LDLR promoter is responsible for part of the LDL-cholesterol variability in primary hypercholesterolemia. PMID:24708769
c-Myc-mediated repression of miR-15-16 in hypoxia is induced by increased HIF-2α and promotes tumor angiogenesis and metastasis by upregulating FGF2. PMID:24704828
Thrombocytopenia-associated mutations in the ANKRD26 regulatory region induce MAPK hyperactivation. PMID:24430186
Plant promoters: an approach of structure and function. PMID:24122284
The next generation of transcription factor binding site prediction. PMID:24039567
Expression profiling of Aldh1l1-precursors in the developing spinal cord reveals glial lineage-specific genes and direct Sox9-Nfe2l1 interactions. PMID:23840004
D-Light on promoters: a client-server system for the analysis and visualization of cis-regulatory elements. PMID:23617301
Multi-species comparative analysis of the equine ACE gene identifies a highly conserved potential transcription factor binding site in intron 16. PMID:23408978
Tethering of the conserved piggyBac transposase fusion protein CSB-PGBD3 to chromosomal AP-1 proteins regulates expression of nearby genes in humans. PMID:23028371
Genetic variants and haplotypes of the UGT1A9, 1A7 and 1A1 genes in Chinese Han. PMID:22888291
Large-scale computational identification of regulatory SNPs with rSNP-MAPPER. PMID:22759655
An information transmission model for transcription factor binding at regulatory DNA sites. PMID:22672438
ANKRD7 and CYTL1 are novel risk genes for alcohol drinking behavior. PMID:22613542
Cataloguing functionally relevant polymorphisms in gene DNA ligase I: a computational approach. PMID:22558535
Genetic variation at a Yin-Yang 1 response site regulates the transcription of cyclin-dependent kinase inhibitor p18INK4C transcript in lupus-prone mice. PMID:22504641
A flexible integrative approach based on random forest improves prediction of transcription factor binding sites. PMID:22492513
DNA-protein interactions: methods for detection and analysis. PMID:22399265
SIRT1 activates MAO-A in the brain to mediate anxiety and exploratory drive. PMID:22169038
Isoform diversity and its importance for axon regeneration. PMID:22151581
The MAPPER2 Database: a multi-genome catalog of putative transcription factor binding sites. PMID:22121218
Genetic variation within a metabolic motif in the chromogranin a promoter: pleiotropic influence on cardiometabolic risk traits in twins. PMID:21918574
Tree-based position weight matrix approach to model transcription factor binding site profiles. PMID:21912677
Inflammatory gene regulatory networks in amnion cells following cytokine stimulation: translational systems approach to modeling human parturition. PMID:21655103
Discovery and assessment of conserved Pax6 target genes and enhancers. PMID:21617155
Cyclin-dependent kinase inhibitor Cdkn2c regulates B cell homeostasis and function in the NZM2410-derived murine lupus susceptibility locus Sle2c1. PMID:21543644
The PLIN4 variant rs8887 modulates obesity related phenotypes in humans through creation of a novel miR-522 seed site. PMID:21533135
Elevated levels of hypoxia-inducible microRNA-210 in pre-eclampsia: new insights into molecular mechanisms for the disease. PMID:21388517
Estrogen-related receptor gamma promotes mesenchymal-to-epithelial transition and suppresses breast tumor growth. PMID:21339306
SOX5 is a candidate gene for chronic obstructive pulmonary disease susceptibility and is necessary for lung development. PMID:21330457
A Bayesian search for transcriptional motifs. PMID:21124986
miR-301a as an NF-κB activator in pancreatic cancer cells. PMID:21113131
Down-regulation of microRNAs 222/221 in acute myelogenous leukemia with deranged core-binding factor subunits. PMID:21076613
Use of structural DNA properties for the prediction of transcription-factor binding sites in Escherichia coli. PMID:21051340
Genomic repertoires of DNA-binding transcription factors across the tree of life. PMID:20675356
Tissue-specific regulatory regions of the PTH gene localized by novel chromosome 11 rearrangement breakpoints in a parathyroid adenoma. PMID:20641034
miR-29 modulates Wnt signaling in human osteoblasts through a positive feedback loop. PMID:20551325
Intron-1 rs3761548 is related to the defective transcription of Foxp3 in psoriasis through abrogating E47/c-Myb binding. PMID:20414968
AML1 is overexpressed in patients with myeloproliferative neoplasms and mediates JAK2V617F-independent overexpression of NF-E2. PMID:20339092
Regulation of FGF21 expression and secretion by retinoic acid receptor-related orphan receptor alpha. PMID:20332535
Genetic variations at ABCG5/G8 genes modulate plasma lipids concentrations in patients with familial hypercholesterolemia. PMID:20172523
CLOCK gene is implicated in weight reduction in obese patients participating in a dietary programme based on the Mediterranean diet. PMID:20065968
Nuclear respiratory factor 2 induces the expression of many but not all human proteins acting in mitochondrial DNA transcription and replication. PMID:19951946
Genetic variants in human CLOCK associate with total energy intake and cytokine sleep factors in overweight subjects (GOLDN population). PMID:19888304
CLOCK genetic variation and metabolic syndrome risk: modulation by monounsaturated fatty acids. PMID:19846548
Transcriptional downregulation of p27KIP1 through regulation of E2F function during LMP1-mediated transformation. PMID:19828622
Identification of functionally related genes using data mining and data integration: a breast cancer case study. PMID:19828084
ADAM17_i33708A>G polymorphism interacts with dietary n-6 polyunsaturated fatty acids to modulate obesity risk in the Genetics of Lipid Lowering Drugs and Diet Network study. PMID:19819120
Analysis of human CYP1A1 and CYP1A2 genes and their shared bidirectional promoter in eight world populations. PMID:19802894
Repression of the miR-17-92 cluster by p53 has an important function in hypoxia-induced apoptosis. PMID:19696742
The effects of ABCG5/G8 polymorphisms on HDL-cholesterol concentrations depend on ABCA1 genetic variants in the Boston Puerto Rican Health Study. PMID:19692220
Gene expression patterns in heterozygous Plk4 murine embryonic fibroblasts. PMID:19607708
Novel variants at KCTD10, MVK, and MMAB genes interact with dietary carbohydrates to modulate HDL-cholesterol concentrations in the Genetics of Lipid Lowering Drugs and Diet Network Study. PMID:19605566
Gene expression profiling in monocytes and SNP association suggest the importance of the STAT1 gene for osteoporosis in both Chinese and Caucasians. PMID:19594299
Effects of variations in the APOA1/C3/A4/A5 gene cluster on different parameters of postprandial lipid metabolism in healthy young men. PMID:19592705
The p53HMM algorithm: using profile hidden markov models to detect p53-responsive genes. PMID:19379484
Genetic variants at the PDZ-interacting domain of the scavenger receptor class B type I interact with diet to influence the risk of metabolic syndrome in obese men and women. PMID:19321583
New scoring schema for finding motifs in DNA Sequences. PMID:19302709
COTRASIF: conservation-aided transcription-factor-binding site finder. PMID:19264796
ADIPOQ polymorphisms, monounsaturated fatty acids, and obesity risk: the GOLDN study. PMID:19238139
Novel promoter and exon mutations of the BMPR2 gene in Chinese patients with pulmonary arterial hypertension. PMID:19223935
Lamin B1 controls oxidative stress responses via Oct-1. PMID:19139261
Identification of neuronal target genes for CCAAT/enhancer binding proteins. PMID:19103292
Hair follicle stem cell-specific PPARgamma deletion causes scarring alopecia. PMID:19052558
Network integration and graph analysis in mammalian molecular systems biology. PMID:19045817
A 19-base pair deletion polymorphism in dihydrofolate reductase is associated with increased unmetabolized folic acid in plasma and decreased red blood cell folate. PMID:19022952
The effects of ABCG5/G8 polymorphisms on plasma HDL cholesterol concentrations depend on smoking habit in the Boston Puerto Rican Health Study. PMID:19005228
Associations between single nucleotide polymorphisms in folate uptake and metabolizing genes with blood folate, homocysteine, and DNA uracil concentrations. PMID:18842806
Upstream stimulatory factor is required for human angiotensinogen expression and differential regulation by the A-20C polymorphism. PMID:18802024
Association analysis of Rgs7 variants with panic disorder. PMID:18762858
ReXSpecies--a tool for the analysis of the evolution of gene regulation across species. PMID:18410675
Probabilistic inference of transcription factor binding from multiple data sources. PMID:18364997
Evolutionary and transcriptional analysis of karyopherin beta superfamily proteins. PMID:18353765
Association study of the oestrogen signalling pathway genes in relation to age at natural menopause. PMID:18305346
Association of common C-reactive protein (CRP) gene polymorphisms with baseline plasma CRP levels and fenofibrate response: the GOLDN study. PMID:18285551
Transcription factors CTCF and Pax6 are segregated to different cell types during retinal cell differentiation. PMID:18224715
The interplay between the master transcription factor PU.1 and miR-424 regulates human monocyte/macrophage differentiation. PMID:18056638
Age-related subproteomic analysis of mouse liver and kidney peroxisomes. PMID:18042274
JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. PMID:18006571
Comparative analysis of regulatory motif discovery tools for transcription factor binding sites. PMID:17893078
A candidate gene approach identifies the TRAF1/C5 region as a risk factor for rheumatoid arthritis. PMID:17880261
Xenobiotic metabolizing enzyme gene polymorphisms predict response to lung volume reduction surgery. PMID:17686149
Olig2-regulated lineage-restricted pathway controls replication competence in neural stem cells and malignant glioma. PMID:17296553
In silico modelling of hormone response elements. PMID:17217520
Stubb: a program for discovery and analysis of cis-regulatory modules. PMID:16845069
Djinn Lite: a tool for customised gene transcript modelling, annotation-data enrichment and exploration. PMID:16426464
A new generation of JASPAR, the open-access repository for transcription factor binding site profiles. PMID:16381983 -
The MAPPER database: a multi-genome catalog of putative transcription factor binding sites
PubMed citations: 64.
64 articles citing: The MAPPER database: a multi-genome catalog of putative transcription factor binding sites
Serum Response Factor (SRF) Drives the Transcriptional Upregulation of the MDM4 Oncogene in HCC. PMID:33429878
A p53/lnc-Ip53 Negative Feedback Loop Regulates Tumor Growth and Chemoresistance. PMID:33173727
MTTFsite: cross-cell type TF binding site prediction by using multi-task learning. PMID:31161194
Regulation of CEACAM1 Protein Expression by the Transcription Factor ETS-1 in BRAF-Mutant Human Metastatic Melanoma Cells. PMID:29558679
Aberrant fatty acid metabolism in skeletal muscle contributes to insulin resistance in zinc transporter 7 (znt7)-knockout mice. PMID:29555680
Snail regulates BMP and TGFβ pathways to control the differentiation status of glioma-initiating cells. PMID:29449696
Investigating transcription factor synergism in humans. PMID:29069301
A microRNA signature of response to erlotinib is descriptive of TGFβ behaviour in NSCLC. PMID:28646226
Developmental Control of NRAMP1 (SLC11A1) Expression in Professional Phagocytes. PMID:28467369
Integrative transcriptome analysis of liver cancer profiles identifies upstream regulators and clinical significance of ACSM3 gene expression. PMID:28390038
Molecular mechanisms underlying noncoding risk variations in psychiatric genetic studies. PMID:28044063
Impairment of DYRK2 augments stem-like traits by promoting KLF4 expression in breast cancer. PMID:27721402
Haplotype and diplotype analyses of variation in ERCC5 transcription cis-regulation in normal bronchial epithelial cells. PMID:27235448
Mechanistic evaluation of primary human hepatocyte culture using global proteomic analysis reveals a selective dedifferentiation profile. PMID:27039104
Identification of linc-NeD125, a novel long non coding RNA that hosts miR-125b-1 and negatively controls proliferation of human neuroblastoma cells. PMID:26480000
Association of vdr, cyp27b1, cyp24a1 and mthfr gene polymorphisms with oral lichen planus risk. PMID:26303648
Slit2 as a β-catenin/Ctnnb1-dependent retrograde signal for presynaptic differentiation. PMID:26159615
Differences in the ovine HSP90AA1 gene expression rates caused by two linked polymorphisms at its promoter affect rams sperm DNA fragmentation under environmental heat stress conditions. PMID:25671615
Interactions Among Plant Transcription Factors Regulating Expression of Stress-responsive Genes. PMID:25249757
Hyper-inflammation and skin destruction mediated by rosiglitazone activation of macrophages in IL-6 deficiency. PMID:25184961
A systems biology approach identified different regulatory networks targeted by KSHV miR-K12-11 in B cells and endothelial cells. PMID:25106478
Mechanisms of interferon-γ production by neutrophils and its function during Streptococcus pneumoniae pneumonia. PMID:25100610
Single-nucleotide mutation matrix: a new model for predicting the NF-κB DNA binding sites. PMID:24992458
DMINDA: an integrated web server for DNA motif identification and analyses. PMID:24753419
Integrated analysis of transcriptomic and proteomic data. PMID:24082820
The next generation of transcription factor binding site prediction. PMID:24039567
Activation of MAPK pathways due to DUSP4 loss promotes cancer stem cell-like phenotypes in basal-like breast cancer. PMID:23966295
Genome-wide DNA methylation analysis reveals a potential mechanism for the pathogenesis and development of uterine leiomyomas. PMID:23818951
Candidate gene association studies: a comprehensive guide to useful in silico tools. PMID:23656885
Regulation of cardiac microRNAs by cardiac microRNAs. PMID:23625950
LASAGNA: a novel algorithm for transcription factor binding site alignment. PMID:23522376
FoxQ1 promotes glioma cells proliferation and migration by regulating NRXN3 expression. PMID:23383267
Transcriptome characterization of immune suppression from battlefield-like stress. PMID:23096155
Fasting-induced FGF21 is repressed by LXR activation via recruitment of an HDAC3 corepressor complex in mice. PMID:23073827
Large-scale computational identification of regulatory SNPs with rSNP-MAPPER. PMID:22759655
Cataloguing functionally relevant polymorphisms in gene DNA ligase I: a computational approach. PMID:22558535
Sox9 and NFIA coordinate a transcriptional regulatory cascade during the initiation of gliogenesis. PMID:22500632
The MAPPER2 Database: a multi-genome catalog of putative transcription factor binding sites. PMID:22121218
A microRNA gene expression signature predicts response to erlotinib in epithelial cancer cell lines and targets EMT. PMID:22045191
High-dose siRNAs upregulate mouse Eri-1 at both transcription and posttranscription levels. PMID:22039495
Visualization and exploration of conserved regulatory modules using ReXSpecies 2. PMID:21942985
Genetic targeting of the active transcription factor XBP1s to dendritic cells potentiates vaccine-induced prophylactic and therapeutic antitumor immunity. PMID:21934655
In silico analysis identifies a novel role for androgens in the regulation of human endometrial apoptosis. PMID:21865353
Nuclear effects of G-protein receptor kinase 5 on histone deacetylase 5-regulated gene transcription in heart failure. PMID:21768220
Proteomic analysis yields an unexpected trans-acting point in control of the human sympathochromaffin phenotype. PMID:21551321
The PLIN4 variant rs8887 modulates obesity related phenotypes in humans through creation of a novel miR-522 seed site. PMID:21533135
MMP1 bimodal expression and differential response to inflammatory mediators is linked to promoter polymorphisms. PMID:21244711
Regulation of FGF21 expression and secretion by retinoic acid receptor-related orphan receptor alpha. PMID:20332535
Transcriptional downregulation of p27KIP1 through regulation of E2F function during LMP1-mediated transformation. PMID:19828622
Gene expression patterns in heterozygous Plk4 murine embryonic fibroblasts. PMID:19607708
Polymorphisms in uracil-processing genes, but not one-carbon nutrients, are associated with altered DNA uracil concentrations in an urban Puerto Rican population. PMID:19403629
COTRASIF: conservation-aided transcription-factor-binding site finder. PMID:19264796
Mef2-mediated transcription of the miR379-410 cluster regulates activity-dependent dendritogenesis by fine-tuning Pumilio2 protein levels. PMID:19197241
DNA methylation profile of tissue-dependent and differentially methylated regions (T-DMRs) in mouse promoter regions demonstrating tissue-specific gene expression. PMID:18971312
New candidate genes for heat resistance in Drosophila melanogaster are regulated by HSF. PMID:18759003
An ultraconserved Hox-Pbx responsive element resides in the coding sequence of Hoxa2 and is active in rhombomere 4. PMID:18417536
ReXSpecies--a tool for the analysis of the evolution of gene regulation across species. PMID:18410675
Transcription factors CTCF and Pax6 are segregated to different cell types during retinal cell differentiation. PMID:18224715
Unbiased gene expression analysis implicates the huntingtin polyglutamine tract in extra-mitochondrial energy metabolism. PMID:17708681
Functional promoter testing using a modified lentiviral transfer vector. PMID:17563724
Olig2-regulated lineage-restricted pathway controls replication competence in neural stem cells and malignant glioma. PMID:17296553
BoCaTFBS: a boosted cascade learner to refine the binding sites suggested by ChIP-chip experiments. PMID:17078876
DBD: a transcription factor prediction database. PMID:16381970
MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes. PMID:15799782
Tags:
Tags
More detailed information about this field from each metasource.
exon
metasource: Fairsharing.org
version: FAIRsharing.org: mapperdb; MAPPER-2; DOI: https://doi.org/10.25504/FAIRsharing.1ex4pm; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: mapperdb; MAPPER-2; DOI: https://doi.org/10.25504/FAIRsharing.1ex4pm; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
intron
metasource: Fairsharing.org
version: FAIRsharing.org: mapperdb; MAPPER-2; DOI: https://doi.org/10.25504/FAIRsharing.1ex4pm; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
transcription factor
metasource: Fairsharing.org
version: FAIRsharing.org: mapperdb; MAPPER-2; DOI: https://doi.org/10.25504/FAIRsharing.1ex4pm; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
nucleotide sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
transcriptional regulator sites and transcription factors
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
exon
metasource: Fairsharing.orgversion: FAIRsharing.org: mapperdb; MAPPER-2; DOI: https://doi.org/10.25504/FAIRsharing.1ex4pm; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: mapperdb; MAPPER-2; DOI: https://doi.org/10.25504/FAIRsharing.1ex4pm; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
intron
metasource: Fairsharing.orgversion: FAIRsharing.org: mapperdb; MAPPER-2; DOI: https://doi.org/10.25504/FAIRsharing.1ex4pm; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
transcription factor
metasource: Fairsharing.orgversion: FAIRsharing.org: mapperdb; MAPPER-2; DOI: https://doi.org/10.25504/FAIRsharing.1ex4pm; Last edited: Jan. 8, 2019, 1:13 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
nucleotide sequence databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
transcriptional regulator sites and transcription factors
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
exon genome intron transcription nucleic acid sequence transcription
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