R35D1V last accessed: 2022-11-04

PlantTFDB 2.0
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:07.993116

planttfdb_2.0
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:07.993116

Other names: PlantTFDB, PlantTFDB 2.0, planttfdb_2.0

Plant Transcription Factor Database (PlantTFDB) provides a comprehensive, high-quality resource of plant transcription factors (TFs), regulatory elements and interactions between them. In the latest version, It contains 320 370 TFs, classified into 58 families, from 165 species. Abundant functional and evolutionary annotations (e.g., GO, functional description, binding motifs, cis-element, regulation, references, orthologous groups and phylogenetic tree, etc.) are provided for identified TFs. In addition, multiple online tools are set up for TF identification, regulation prediction and functional enrichment analyses.

Webpage:

http://planttfdb.cbi.pku.edu.cn

Licence:

Name: NIH Web Policies and Notices
URL: https://www.nih.gov/web-policies-notices

Publications:

Publications
More detailed information about this field from each metasource.

PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors
PMID: 24174544
metasource: Fairsharing.org
version: FAIRsharing.org: PlantTFDB; Plant Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.ex3fqk; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database
PMID: 21097470
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:07.993116

An Arabidopsis Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors
PMID: 25750178
metasource: Fairsharing.org
version: FAIRsharing.org: PlantTFDB; Plant Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.ex3fqk; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

http://dx.doi.org/10.1093/nar/gkw982
metasource: Fairsharing.org
version: FAIRsharing.org: PlantTFDB; Plant Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.ex3fqk; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

http://dx.doi.org/10.1093/nar/gkt1016
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors PubMed citations: 396.

396 articles citing: PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors

Identification and Functional Analysis of SabHLHs in Santalum album L. PMID:35888105
Global Integrated Genomic and Transcriptomic Analyses of MYB Transcription Factor Superfamily in C3 Model Plant Oryza sativa (L.) Unravel Potential Candidates Involved in Abiotic Stress Signaling. PMID:35873492
Functional characterization and analysis of transcriptional regulation of sugar transporter SWEET13c in sugarcane Saccharum spontaneum. PMID:35869432
Genome-Wide Identification and Analysis of the NAC Transcription Factor Gene Family in Garden Asparagus (Asparagus officinalis). PMID:35741738
Integrative Analysis of the GRAS Genes From Chinese White Pear (Pyrus bretschneideri): A Critical Role in Leaf Regeneration. PMID:35734253
Emerging Roles of Plant DNA-Binding With One Finger Transcription Factors in Various Hormone and Stress Signaling Pathways. PMID:35668792
Heterologous Expression of Dehydration-Inducible MfbHLH145 of Myrothamnus flabellifoli Enhanced Drought and Salt Tolerance in Arabidopsis. PMID:35628358
Comparative transcriptomic analysis of genes in the triterpene saponin biosynthesis pathway in leaves and roots of Ardisia kteniophylla A. DC., a plant used in traditional Chinese medicine. PMID:35600685
Current Research Trends and Prospects for Yield and Quality Improvement in Sesame, an Important Oilseed Crop. PMID:35599863
Evolution and functional diversification of R2R3-MYB transcription factors in plants. PMID:35591925
Genome-Wide Analyses of MADS-Box Genes in Humulus lupulus L. Reveal Potential Participation in Plant Development, Floral Architecture, and Lupulin Gland Metabolism. PMID:35567239
A de novo regulation design shows an effectiveness in altering plant secondary metabolism. PMID:35499047
Genome-Wide Identification of the AP2/ERF Gene Family and Functional Analysis of GmAP2/ERF144 for Drought Tolerance in Soybean. PMID:35419020
GENOMES UNCOUPLED1 plays a key role during the de-etiolation process in Arabidopsis. PMID:35322876
Genome-Wide Analysis of the Banana WRKY Transcription Factor Gene Family Closely Related to Fruit Ripening and Stress. PMID:35270130
Comparative Transcriptome Analysis of Two Sweet Sorghum Genotypes with Different Salt Tolerance Abilities to Reveal the Mechanism of Salt Tolerance. PMID:35216389
Identification and regulatory network analysis of SPL family transcription factors in Populus euphratica Oliv. heteromorphic leaves. PMID:35190606
Profiling of H3K4me3 and H3K27me3 and Their Roles in Gene Subfunctionalization in Allotetraploid Cotton. PMID:34975944
Quantitative Trait Loci and Transcriptome Analysis Reveal Genetic Basis of Fiber Quality Traits in CCRI70 RIL Population of Gossypium hirsutum. PMID:34975939
Recent Duplications Dominate VQ and WRKY Gene Expansions in Six Prunus Species. PMID:34961840
Statistical estimates of multiple transcription factors binding in the model plant genomes based on ChIP-seq data. PMID:34953471
A Comparative Transcriptomic Meta-Analysis Revealed Conserved Key Genes and Regulatory Networks Involved in Drought Tolerance in Cereal Crops. PMID:34884864
Integrated transcriptome and small RNA sequencing analyses reveal a drought stress response network in Sophora tonkinensis. PMID:34856930
Comprehensive Comparative Analysis of the GATA Transcription Factors in Four Rosaceae Species and Phytohormonal Response in Chinese Pear (Pyrus bretschneideri) Fruit. PMID:34830372
Insights into Regulation of C2 and C4 Photosynthesis in Amaranthaceae/Chenopodiaceae Using RNA-Seq. PMID:34830004
Comparative transcriptome analyses of different Salvia miltiorrhiza varieties during the accumulation of tanshinones. PMID:34721983
Genome-Wide Identification and Expression Analysis of AP2/ERF Transcription Factor Related to Drought Stress in Cultivated Peanut (Arachis hypogaea L.). PMID:34721538
Transcriptome analysis of Clavibacter michiganensis subsp. michiganensis-infected tomatoes: a role of salicylic acid in the host response. PMID:34666675
Comparative physiological and transcriptomic analysis reveals salinity tolerance mechanisms in Sorghum bicolor (L.) Moench. PMID:34657208
Comprehensive genome-wide analysis of calmodulin-binding transcription activator (CAMTA) in Durio zibethinus and identification of fruit ripening-associated DzCAMTAs. PMID:34649525
Transcriptome repository of North-Western Himalayan endangered medicinal herbs: a paramount approach illuminating molecular perspective of phytoactive molecules and secondary metabolism. PMID:34557965
AprGPD: the apricot genomic and phenotypic database. PMID:34556150
Unveiling the transcriptomic complexity of Miscanthus sinensis using a combination of PacBio long read- and Illumina short read sequencing platforms. PMID:34551715
Transcript Profiling of MIKCc MADS-Box Genes Reveals Conserved and Novel Roles in Barley Inflorescence Development. PMID:34539699
Transcriptome Analysis Reveals the Important Role of WRKY28 in Fusarium oxysporum Resistance. PMID:34490017
Genome-Wide Identification, Expansion Mechanism and Expression Profiling Analysis of GLABROUS1 Enhancer-Binding Protein (GeBP) Gene Family in Gramineae Crops. PMID:34445464
Evaluation of drought resistance and transcriptome analysis for the identification of drought-responsive genes in Iris germanica. PMID:34381085
Comparative transcriptome analysis of unripe and ripe banana (cv. Nendran) unraveling genes involved in ripening and other related processes. PMID:34314413
Key Regulators of Sucrose Metabolism Identified through Comprehensive Comparative Transcriptome Analysis in Peanuts. PMID:34298903
Using Network-Based Machine Learning to Predict Transcription Factors Involved in Drought Resistance. PMID:34249082
Depicting the molecular responses of adventitious rooting to waterlogging in melon hypocotyls by transcriptome profiling. PMID:34221821
Sex biased expression of hormone related genes at early stage of sex differentiation in papaya flowers. PMID:34193826
A Comparative Analysis of Transcription Networks Active in Juvenile and Mature Wood in Populus. PMID:34122491
Genome-wide identification and expression analysis of the bHLH transcription factor family and its response to abiotic stress in sorghum [Sorghum bicolor (L.) Moench]. PMID:34090335
Global Transcriptome Profiling Identified Transcription Factors, Biological Process, and Associated Pathways for Pre-Harvest Aflatoxin Contamination in Groundnut. PMID:34073230
The tepary bean genome provides insight into evolution and domestication under heat stress. PMID:33976152
Single-cell transcriptome profiling of buffelgrass (Cenchrus ciliaris) eggs unveils apomictic parthenogenesis signatures. PMID:33972603
Understanding the Integrated Pathways and Mechanisms of Transporters, Protein Kinases, and Transcription Factors in Plants under Salt Stress. PMID:33954166
Basic leucine zipper (bZIP) transcription factor genes and their responses to drought stress in ginseng, Panax ginseng C.A. Meyer. PMID:33932982
Genome-Wide Transcriptomic Identification and Functional Insight of Lily WRKY Genes Responding to Botrytis Fungal Disease. PMID:33920859
Tissue-specific transcriptome analysis of drought stress and rehydration in Trachycarpus fortunei at seedling. PMID:33850641
Integrative inference of transcriptional networks in Arabidopsis yields novel ROS signalling regulators. PMID:33846597
A Comparison of the Transcriptomes of Cowpeas in Response to Two Different Ionizing Radiations. PMID:33802840
Transcriptome and Comparative Chloroplast Genome Analysis of Vincetoxicum versicolor: Insights Into Molecular Evolution and Phylogenetic Implication. PMID:33747039
Genome-Wide Characterization and Expression Analysis of the HD-ZIP Gene Family in Response to Salt Stress in Pepper. PMID:33604369
Transcriptome analysis and molecular mechanism of linseed (Linum usitatissimum L.) drought tolerance under repeated drought using single-molecule long-read sequencing. PMID:33563217
Dissecting the transcriptional regulation of proanthocyanidin and anthocyanin biosynthesis in soybean (Glycine max). PMID:33539645
Transcriptomic analysis reveals key transcription factors associated to drought tolerance in a wild papaya (Carica papaya) genotype. PMID:33513158
Transcriptome and phytochemical analyses provide insights into the organic sulfur pathway in Allium hirtifolium. PMID:33436989
Hotter, drier, CRISPR: the latest edit on climate change. PMID:33420514
Candidate regulators and target genes of drought stress in needles and roots of Norway spruce. PMID:33416078
Transcriptional response of Asarum heterotropoides Fr. Schmidt var. mandshuricum (Maxim.) Kitag. leaves grown under full and partial daylight conditions. PMID:33407099
Transcriptome profiling reveals the effects of drought tolerance in Giant Juncao. PMID:33390157
Comparative Transcriptome Reveals the Genes' Adaption to Herkogamy of Lumnitzera littorea (Jack) Voigt. PMID:33363568
Transcriptome Analysis Identified Coordinated Control of Key Pathways Regulating Cellular Physiology and Metabolism upon Aspergillus flavus Infection Resulting in Reduced Aflatoxin Production in Groundnut. PMID:33339393
Genome-wide characterization of WRKY gene family in Helianthus annuus L. and their expression profiles under biotic and abiotic stresses. PMID:33270651
Underpinning miRNA-miRNA co-functional interaction patterns in the metabolism of Oryza sativa by genome-scale network analysis. PMID:33241156
A Comprehensive Toolkit for Quick and Easy Visualization of Marker Proteins, Protein-Protein Interactions and Cell Morphology in Marchantia polymorpha. PMID:33178238
Prometheus, an omics portal for interkingdom comparative genomic analyses. PMID:33112870
Characterization of Drought-Responsive Transcriptome During Seed Germination in Adzuki Bean (Vigna angularis L.) by PacBio SMRT and Illumina Sequencing. PMID:33110419
Transcriptomic Analysis and Specific Expression of Transcription Factor Genes in the Root and Sporophyll of Dryopteris fragrans (L.) Schott. PMID:33023244
Revealing the full-length transcriptome of caucasian clover rhizome development. PMID:32938399
Deciphering transcriptional regulators of banana fruit ripening by regulatory network analysis. PMID:32920977
Transcriptome Analysis of Early Defenses in Rice against Fusarium fujikuroi. PMID:32910281
Identification of Key Genes for the Ultrahigh Yield of Rice Using Dynamic Cross-tissue Network Analysis. PMID:32736037
An Integrative Analysis of Transcriptome, Proteome and Hormones Reveals Key Differentially Expressed Genes and Metabolic Pathways Involved in Flower Development in Loquat. PMID:32698310
De novo sequencing of Bletilla striata (Orchidaceae) transcriptome and identification of genes involved in polysaccharide biosynthesis. PMID:32609279
Expression regulation of MALATE SYNTHASE involved in glyoxylate cycle during protocorm development in Phalaenopsis aphrodite (Orchidaceae). PMID:32572104
Isolation, characterization and expression analysis of stress responsive plant nuclear transcriptional factor subunit (NF-YB2) from commercial Saccharum hybrid and wild relative Erianthus arundinaceus. PMID:32566442
Genome-wide identification and expression analysis of the Dof gene family under drought stress in tea (Camellia sinensis). PMID:32566398
Comparative Transcriptome Analysis of Two Contrasting Soybean Varieties in Response to Aluminum Toxicity. PMID:32560405
Genome-Wide Analysis of Basic Helix-Loop-Helix Transcription Factors to Elucidate Candidate Genes Related to Fruit Ripening and Stress in Banana (Musa acuminata L. AAA Group, cv. Cavendish). PMID:32536932
Dataset of transcriptome assembly of date palm embryogenic calli and functional annotation. PMID:32518810
Molecular and Physiological Alterations in Chickpea under Elevated CO2 Concentrations. PMID:32502248
Transcriptome analysis of lateral buds from Phyllostachys edulis rhizome during germination and early shoot stages. PMID:32448144
QTG-Finder2: A Generalized Machine-Learning Algorithm for Prioritizing QTL Causal Genes in Plants. PMID:32430305
Transcriptome analysis of responses in Brachypodium distachyon overexpressing the BdbZIP26 transcription factor. PMID:32312226
Exploring dynamic protein-protein interactions in cassava through the integrative interactome network. PMID:32300157
Gene expression profiling identifies pathways involved in seed maturation of Jatropha curcas. PMID:32272887
The genome evolution and domestication of tropical fruit mango. PMID:32143734
Transcriptome analysis reveals the defense mechanism of cotton against Verticillium dahliae in the presence of the biocontrol fungus Chaetomium globosum CEF-082. PMID:32106811
Transcriptome Analysis and Identification of Genes Associated with Starch Metabolism in Castanea henryi Seed (Fagaceae). PMID:32093295
In silico characterization, and expression analysis of rice golden 2-like (OsGLK) members in response to low phosphorous. PMID:32086721
Water Deficit Transcriptomic Responses Differ in the Invasive Tamarix chinensis and T. ramosissima Established in the Southern and Northern United States. PMID:31936615
Comparative Transcriptome Analysis Provides Molecular Insights into the Interaction of Beet necrotic yellow vein virus and Beet soil-borne mosaic virus with Their Host Sugar Beet. PMID:31936258
Genome-Wide Identification and Characterization of the Mitochondrial Transcription Termination Factors (mTERFs) in Capsicum annuum L. PMID:31906076
The GATA transcription factor GNC plays an important role in photosynthesis and growth in poplar. PMID:31872214
Salinity stress-responsive transcription factors in the liverwort Marchantia polymorpha. PMID:31819734
Molecular Analysis of UV-C Induced Resveratrol Accumulation in Polygonum cuspidatum Leaves. PMID:31817915
Early Stage Adaptation of a Mesophilic Green Alga to Antarctica: Systematic Increases in Abundance of Enzymes and LEA Proteins. PMID:31794607
The MADS-box transcription factor PHERES1 controls imprinting in the endosperm by binding to domesticated transposons. PMID:31789592
Transcription Factor Networks in Leaves of Cichorium endivia: New Insights into the Relationship Between Photosynthesis and Leaf Development. PMID:31766484
Genome-wide identification and characterization of the MADS-box gene family in Salix suchowensis. PMID:31720123
PlantRegMap: charting functional regulatory maps in plants. PMID:31701126
PacBio single-molecule long-read sequencing shed new light on the complexity of the Carex breviculmis transcriptome. PMID:31664898
Genome-Wide Investigation of the NAC Gene Family and Its Potential Association with the Secondary Cell Wall in Moso Bamboo. PMID:31615151
Integration of Transcriptomics and Metabolomics for Pepper (Capsicum annuum L.) in Response to Heat Stress. PMID:31614571
Identification and evolutionary characterization of salt-responsive transcription factors in the succulent halophyte Suaeda fruticosa. PMID:31545841
Genome-wide identification and expression profile analysis of nuclear factor Y family genes in Sorghum bicolor L. (Moench). PMID:31536532
Genome-wide analysis of cotton C2H2-zinc finger transcription factor family and their expression analysis during fiber development. PMID:31510939
Gene Expression Maps in Plants: Current State and Prospects. PMID:31466308
Flavonoid Biosynthesis Is Likely More Susceptible to Elevation and Tree Age Than Other Branch Pathways Involved in Phenylpropanoid Biosynthesis in Ginkgo Leaves. PMID:31417595
OoNAC72, a NAC-Type Oxytropis ochrocephala Transcription Factor, Conferring Enhanced Drought and Salt Stress Tolerance in Arabidopsis. PMID:31354764
Lipid remodeling regulator 1 (LRL1) is differently involved in the phosphorus-depletion response from PSR1 in Chlamydomonas reinhardtii. PMID:31350858
Transcriptome profiling of Gerbera hybrida reveals that stem bending is caused by water stress and regulation of abscisic acid. PMID:31331262
Transcription factors involved in abiotic stress responses in Maize (Zea mays L.) and their roles in enhanced productivity in the post genomics era. PMID:31328030
Musa balbisiana genome reveals subgenome evolution and functional divergence. PMID:31308504
Core transcriptional signatures of phase change in the migratory locust. PMID:31292921
Functional analysis of the heterotrimeric NF-Y transcription factor complex in cassava disease resistance. PMID:31282544
The bHLH family member ZmPTF1 regulates drought tolerance in maize by promoting root development and abscisic acid synthesis. PMID:31267122
Identification and Characterization of MYB-bHLH-WD40 Regulatory Complex Members Controlling Anthocyanidin Biosynthesis in Blueberry Fruits Development. PMID:31261791
Variations in the Structure and Evolution of Rice WRKY Genes in Indica and Japonica Genotypes and their Co-expression Network in Mediating Disease Resistance. PMID:31236008
Are Market GM Plants an Unrecognized Platform for Bioterrorism and Biocrime? PMID:31192204
Genome-wide identification, phylogeny, evolutionary expansion and expression analyses of bZIP transcription factor family in tartaty buckwheat. PMID:31185893
Sequencing of a Wild Apple (Malus baccata) Genome Unravels the Differences Between Cultivated and Wild Apple Species Regarding Disease Resistance and Cold Tolerance. PMID:31126974
HvWRKY23 regulates flavonoid glycoside and hydroxycinnamic acid amide biosynthetic genes in barley to combat Fusarium head blight. PMID:31098785
Transcriptional regulation of Lonicera japonica Thunb. during flower development as revealed by comprehensive analysis of transcription factors. PMID:31088368
Transcriptome and physiological analyses for revealing genes involved in wheat response to endoplasmic reticulum stress. PMID:31072347
The trihelix family of transcription factors: functional and evolutionary analysis in Moso bamboo (Phyllostachys edulis). PMID:31023225
Comparative analysis of the root and leaf transcriptomes in Chelidonium majus L. PMID:30986259
Brassica napus Infected with Leptosphaeria maculans. PMID:30979089
Evaluation of the diversity and phylogenetic implications of NAC transcription factor members of four reference species from the different embryophytic plant groups. PMID:30956419
Transcriptome and hormone analyses provide insights into hormonal regulation in strawberry ripening. PMID:30949762
Genomic insights into HSFs as candidate genes for high-temperature stress adaptation and gene editing with minimal off-target effects in flax. PMID:30944362
Analysis of Rice Proteins with DLN Repressor Motif/S. PMID:30935059
Expression and regulatory asymmetry of retained Arabidopsis thaliana transcription factor genes derived from whole genome duplication. PMID:30866803
Comparative transcriptome analysis uncovers the regulatory functions of long noncoding RNAs in fruit development and color changes of Fragaria pentaphylla. PMID:30854215
Insight into the B3Transcription Factor Superfamily and Expression Profiling of B3 Genes in Axillary Buds after Topping in Tobacco(Nicotiana tabacum L.). PMID:30791672
The Systems Architecture of Molecular Memory in Poplar after Abiotic Stress. PMID:30705134
Pan- and core- gene association networks: Integrative approaches to understanding biological regulation. PMID:30625202
Genome wide characterization of barley NAC transcription factors enables the identification of grain-specific transcription factors exclusive for the Poaceae family of monocotyledonous plants. PMID:30592743
Effect of Aspergillus flavus Fungal Elicitor on the Production of Terpenoid Indole Alkaloids in Catharanthus roseus Cambial Meristematic Cells. PMID:30544939
An integrated omics analysis reveals molecular mechanisms that are associated with differences in seed oil content between Glycine max and Brassica napus. PMID:30514240
Vascular Plant One-Zinc-Finger (VOZ) Transcription Factors Are Positive Regulators of Salt Tolerance in Arabidopsis. PMID:30477148
Identification, Classification, and Functional Analysis of AP2/ERF Family Genes in the Desert Moss Bryum argenteum. PMID:30463185
Comparative genome-wide analysis of WRKY transcription factors in two Asian legume crops: Adzuki bean and Mung bean. PMID:30451872
Structural analysis reveals a "molecular calipers" mechanism for a LATERAL ORGAN BOUNDARIES DOMAIN transcription factor protein from wheat. PMID:30425099
Opaque-2 Regulates a Complex Gene Network Associated with Cell Differentiation and Storage Functions of Maize Endosperm. PMID:30262552
Genome-wide identification and characterization of CONSTANS-like gene family in radish (Raphanus sativus). PMID:30248137
A Trihelix Family Transcription Factor Is Associated with Key Genes in Mixed-Linkage Glucan Accumulation. PMID:30224432
---A web resource for nutrient use efficiency-related genes, quantitative trait loci and microRNAs in important cereals and model plants. PMID:30135718
Genome-wide identification of the auxin/indole-3-acetic acid (Aux/IAA) gene family in pepper, its characterisation, and comprehensive expression profiling under environmental and phytohormones stress. PMID:30104758
Substantial Epigenetic Variation Causing Flower Color Chimerism in the Ornamental Tree Prunus mume Revealed by Single Base Resolution Methylome Detection and Transcriptome Sequencing. PMID:30087265
Identification of a G2-like transcription factor, OsPHL3, functions as a negative regulator of flowering in rice by co-expression and reverse genetic analysis. PMID:30081823
Transcriptome and metabolome reveal distinct carbon allocation patterns during internode sugar accumulation in different sorghum genotypes. PMID:30051585
Identification of genes associated with stress tolerance in moth bean [Vigna aconitifolia (Jacq.) Marechal], a stress hardy crop. PMID:30042612
Transcriptome sequencing and expression profiling of genes involved in the response to abiotic stress in Medicago ruthenica. PMID:30004107
Maize opaque mutants are no longer so opaque. PMID:29978299
Transcriptome and Expression Profiling Analysis of Recalcitrant Tea (Camellia sinensis L.) Seeds Sensitive to Dehydration. PMID:29967765
Genome-Wide Association Analyses Reveal the Importance of Alternative Splicing in Diversifying Gene Function and Regulating Phenotypic Variation in Maize. PMID:29967286
Transcriptome analysis of microRNA156 overexpression alfalfa roots under drought stress. PMID:29921939
A Core Regulatory Pathway Controlling Rice Tiller Angle Mediated by the LAZY1-Dependent Asymmetric Distribution of Auxin. PMID:29915152
ZmNF-YB16 Overexpression Improves Drought Resistance and Yield by Enhancing Photosynthesis and the Antioxidant Capacity of Maize Plants. PMID:29896208
Function, dynamics and evolution of network motif modules in integrated gene regulatory networks of worm and plant. PMID:29873777
Identification of Putative Precursor Genes for the Biosynthesis of Cannabinoid-Like Compound in Radula marginata. PMID:29868043
Unraveling the induction of phytoene synthase 2 expression by salt stress and abscisic acid in Daucus carota. PMID:29860511
De novo sequencing, assembly and characterisation of Aloe vera transcriptome and analysis of expression profiles of genes related to saponin and anthraquinone metabolism. PMID:29859051
Transcriptome analysis of differentially expressed genes involved in selenium accumulation in tea plant (Camellia sinensis). PMID:29856771
The developmental dynamics of the Populus stem transcriptome. PMID:29851301
Transcriptional Profiles of SmWRKY Family Genes and Their Putative Roles in the Biosynthesis of Tanshinone and Phenolic Acids in Salvia miltiorrhiza. PMID:29843472
Transcriptome analysis of the typical freshwater rhodophytes Sheathia arcuata grown under different light intensities. PMID:29813098
Delineation of condition specific Cis- and Trans-acting elements in plant promoters under various Endo- and exogenous stimuli. PMID:29764390
Combined Analysis of the Fruit Metabolome and Transcriptome Reveals Candidate Genes Involved in Flavonoid Biosynthesis in Actinidia arguta. PMID:29762529
Lateral Root Development in Potato Is Mediated by Stu-mi164 Regulation of NAC Transcription Factor. PMID:29651294
Ginseng Genome Database: an open-access platform for genomics of Panax ginseng. PMID:29649979
Comparative transcriptome analysis in Arabidopsis ein2/ore3 and ahk3/ore12 mutants during dark-induced leaf senescence. PMID:29648620
Genome-wide comparative and evolutionary analysis of Calmodulin-binding Transcription Activator (CAMTA) family in Gossypium species. PMID:29615731
Transcriptomic Analysis Reveal the Molecular Mechanisms of Wheat Higher-Temperature Seedling-Plant Resistance to Puccinia striiformis f. sp. tritici. PMID:29541084
Genome-Wide Identification and Analysis of TCP Transcription Factors Involved in the Formation of Leafy Head in Chinese Cabbage. PMID:29538304
Genome-wide identification and expression analysis of GRAS family transcription factors in tea plant (Camellia sinensis). PMID:29500448
Mapping the microRNA Expression Profiles in Glyoxalase Over-expressing Salinity Tolerant Rice. PMID:29491730
Time-Course Transcriptomics Analysis Reveals Key Responses of Submerged Deepwater Rice to Flooding. PMID:29475897
De novo transcriptomic analysis of leaf and fruit tissue of Cornus officinalis using Illumina platform. PMID:29451882
NetMiner-an ensemble pipeline for building genome-wide and high-quality gene co-expression network using massive-scale RNA-seq samples. PMID:29425247
Sorghum root-system classification in contrasting P environments reveals three main rooting types and root-architecture-related marker-trait associations. PMID:29351588
A Global View of Transcriptome Dynamics During Male Floral Bud Development in Populus tomentosa. PMID:29335419
Biology in the Dry Seed: Transcriptome Changes Associated with Dry Seed Dormancy and Dormancy Loss in the Arabidopsis GA-Insensitive sleepy1-2 Mutant. PMID:29312402
De novo transcriptome analyses reveals putative pathway genes involved in biosynthesis and regulation of camptothecin in Nothapodytes nimmoniana (Graham) Mabb. PMID:29270891
Genome-wide characterization and expression profiling of NAC transcription factor genes under abiotic stresses in radish (Raphanus sativus L.). PMID:29259849
Kiwifruit SVP2 controls developmental and drought-stress pathways. PMID:29222611
Comprehensive Genome-Wide Classification Reveals That Many Plant-Specific Transcription Factors Evolved in Streptophyte Algae. PMID:29216360
Transcriptome profile analysis reveals the regulation mechanism of floral sex differentiation in Jatropha curcas L. PMID:29180629
Patterns and Consequences of Subgenome Differentiation Provide Insights into the Nature of Paleopolyploidy in Plants. PMID:29180596
Comprehensive transcriptome analysis reveals distinct regulatory programs during vernalization and floral bud development of orchardgrass (Dactylis glomerata L.). PMID:29166861
Transcriptome sequencing analysis of alfalfa reveals CBF genes potentially playing important roles in response to freezing stress. PMID:29111565
Reciprocal cross-regulation of VND and SND multigene TF families for wood formation in Populus trichocarpa. PMID:29078399
Functional Analysis of a Pomegranate (Punica granatum L.) MYB Transcription Factor Involved in the Regulation of Anthocyanin Biosynthesis. PMID:28959277
Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis. PMID:28922793
Seed maturation associated transcriptional programs and regulatory networks underlying genotypic difference in seed dormancy and size/weight in wheat (Triticum aestivum L.). PMID:28915785
Molecular insights into photosynthesis and carbohydrate metabolism in Jatropha curcas grown under elevated CO2 using transcriptome sequencing and assembly. PMID:28894153
Specificity versus redundancy in the RAP2.4 transcription factor family of Arabidopsis thaliana: transcriptional regulation of genes for chloroplast peroxidases. PMID:28835225
Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network. PMID:28827376
Desiccation tolerance in bryophytes: The dehydration and rehydration transcriptomes in the desiccation-tolerant bryophyte Bryum argenteum. PMID:28790328
Genome-wide identification of gene expression in contrasting maize inbred lines under field drought conditions reveals the significance of transcription factors in drought tolerance. PMID:28700592
Genome-Wide Sequence and Expression Analysis of the NAC Transcription Factor Family in Polyploid Wheat. PMID:28698232
Genome-wide identification of pistil-specific genes expressed during fruit set initiation in tomato (Solanum lycopersicum). PMID:28683065
Transcriptional Network Analysis Reveals Drought Resistance Mechanisms of AP2/ERF Transgenic Rice. PMID:28663756
A Quantitative Acetylomic Analysis of Early Seed Development in Rice (Oryza sativa L.). PMID:28654018
Transcriptome profiling of Cucumis metuliferus infected by Meloidogyne incognita provides new insights into putative defense regulatory network in Cucurbitaceae. PMID:28615634
Global identification, structural analysis and expression characterization of bHLH transcription factors in wheat. PMID:28558686
Large-scale transcriptome analysis reveals arabidopsis metabolic pathways are frequently influenced by different pathogens. PMID:28540497
Dynamic Cytology and Transcriptional Regulation of Rice Lamina Joint Development. PMID:28500269
Organ-specific transcriptome profiling of metabolic and pigment biosynthesis pathways in the floral ornamental progenitor species Anthurium amnicola Dressler. PMID:28473720
Systems biology study of transcriptional and post-transcriptional co-regulatory network sheds light on key regulators involved in important biological processes in Citrus sinensis. PMID:28461722
Genetic variants associated with the root system architecture of oilseed rape (Brassica napus L.) under contrasting phosphate supply. PMID:28430897
Development of Incompletely Fused Carpels in Maize Ovary Revealed by miRNA, Target Gene and Phytohormone Analysis. PMID:28421097
Poplar stem transcriptome is massively remodelled in response to single or repeated mechanical stimuli. PMID:28412928
Gene co-expression network connectivity is an important determinant of selective constraint. PMID:28406900
H2A monoubiquitination in Arabidopsis thaliana is generally independent of LHP1 and PRC2 activity. PMID:28403905
Mapping the N-linked glycosites of rice (Oryza sativa L.) germinating embryos. PMID:28328971
Bioinformatics identification of new targets for improving low temperature stress tolerance in spring and winter wheat. PMID:28302069
Transcriptome-Wide Identification, Classification, and Characterization of AP2/ERF Family Genes in the Desert Moss Syntrichia caninervis. PMID:28289426
Melatonin Regulates Root Architecture by Modulating Auxin Response in Rice. PMID:28223997
Transcriptome analysis of root-knot nematode (Meloidogyne incognita)-infected tomato (Solanum lycopersicum) roots reveals complex gene expression profiles and metabolic networks of both host and nematode during susceptible and resistance responses. PMID:28220591
Identification, classification, and transcription profiles of the B-type response regulator family in pear. PMID:28207822
Non-syntenic genes drive RTCS-dependent regulation of the embryo transcriptome during formation of seminal root primordia in maize (Zea mays L.). PMID:28204533
Dynamic changes in the transcriptome of Populus hopeiensis in response to abscisic acid. PMID:28198429
Wheat drought-responsive WXPL transcription factors regulate cuticle biosynthesis genes. PMID:28161858
Heat Stress Regulates the Expression of Genes at Transcriptional and Post-Transcriptional Levels, Revealed by RNA-seq in Brachypodium distachyon. PMID:28119730
Genome-wide analysis of cis-regulatory element structure and discovery of motif-driven gene co-expression networks in grapevine. PMID:28119334
Transcriptome Analysis of the Cf-12-Mediated Resistance Response to Cladosporium fulvum in Tomato. PMID:28105042
MarpoDB: An Open Registry for Marchantia Polymorpha Genetic Parts. PMID:28100647
Screening of Candidate Leaf Morphology Genes by Integration of QTL Mapping and RNA Sequencing Technologies in Oilseed Rape (Brassica napus L.). PMID:28068426
Plant genome and transcriptome annotations: from misconceptions to simple solutions. PMID:28062412
Function of AP2/ERF Transcription Factors Involved in the Regulation of Specialized Metabolism in Ophiorrhiza pumila Revealed by Transcriptomics and Metabolomics. PMID:28018397
Identification and Analysis of NaHCO3 Stress Responsive Genes in Wild Soybean (Glycine soja) Roots by RNA-seq. PMID:28018382
Transcriptome portrait of cellulose-enriched flax fibres at advanced stage of specialization. PMID:27981388
Characterization of the cytokinin-responsive transcriptome in rice. PMID:27931185
Transcriptome differences between fiber-type and seed-type Cannabis sativa variety exposed to salinity. PMID:27924117
PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants. PMID:27924042
Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals. PMID:27920789
Studying Secondary Growth and Bast Fiber Development: The Hemp Hypocotyl Peeks behind the Wall. PMID:27917184
Insights into the Sesquiterpenoid Pathway by Metabolic Profiling and De novo Transcriptome Assembly of Stem-Chicory (Cichorium intybus Cultigroup "Catalogna"). PMID:27877190
Transcript profiling for early stages during embryo development in Scots pine. PMID:27863470
Heat shock transcription factors in banana: genome-wide characterization and expression profile analysis during development and stress response. PMID:27857174
Genetic determination of the enhanced drought resistance of rice maintainer HuHan2B by pedigree breeding. PMID:27853319
Novel Genomic and Evolutionary Insight of WRKY Transcription Factors in Plant Lineage. PMID:27853303
Transcriptome analysis uncovers key regulatory and metabolic aspects of soybean embryonic axes during germination. PMID:27824062
A combination of genome-wide association and transcriptome analysis reveals candidate genes controlling harvest index-related traits in Brassica napus. PMID:27811979
Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor. PMID:27803124
Genome-Wide Investigation of Hsf Genes in Sesame Reveals Their Segmental Duplication Expansion and Their Active Role in Drought Stress Response. PMID:27790233
Gene expression analysis reveals important pathways for drought response in leaves and roots of a wheat cultivar adapted to rainfed cropping in the Cerrado biome. PMID:27768155
Five novel transcription factors as potential regulators of OsNHX1 gene expression in a salt tolerant rice genotype. PMID:27766460
RAP2.4a Is Transported through the Phloem to Regulate Cold and Heat Tolerance in Papaya Tree (Carica papaya cv. Maradol): Implications for Protection Against Abiotic Stress. PMID:27764197
Deciphering Transcriptional Programming during Pod and Seed Development Using RNA-Seq in Pigeonpea (Cajanus cajan). PMID:27760186
Transcription factors involved in drought tolerance and their possible role in developing drought tolerant cultivars with emphasis on wheat (Triticum aestivum L.). PMID:27738714
Leaf Transcriptome Sequencing for Identifying Genic-SSR Markers and SNP Heterozygosity in Crossbred Mango Variety 'Amrapali' (Mangifera indica L.). PMID:27736892
Differential Coexpression Analysis Reveals Extensive Rewiring of Arabidopsis Gene Coexpression in Response to Pseudomonas syringae Infection. PMID:27721457
Members of WRKY Group III transcription factors are important in TYLCV defense signaling pathway in tomato (Solanum lycopersicum). PMID:27717312
Exploring drought stress-regulated genes in senna (Cassia angustifolia Vahl.): a transcriptomic approach. PMID:27709374
Unravelling molecular mechanisms from floral initiation to lipid biosynthesis in a promising biofuel tree species, Pongamia pinnata using transcriptome analysis. PMID:27677333
EGRINs (Environmental Gene Regulatory Influence Networks) in Rice That Function in the Response to Water Deficit, High Temperature, and Agricultural Environments. PMID:27655842
Genome-wide analysis of Dof transcription factors reveals functional characteristics during development and response to biotic stresses in pepper. PMID:27653666
De novo Transcriptome Analysis Reveals Distinct Defense Mechanisms by Young and Mature Leaves of Hevea brasiliensis (Para Rubber Tree). PMID:27619402
Genome-wide characterization and expression analysis of MYB transcription factors in Gossypium hirsutum. PMID:27613381
Genome-wide Identification of TCP Family Transcription Factors from Populus euphratica and Their Involvement in Leaf Shape Regulation. PMID:27605130
Comprehensive analysis and discovery of drought-related NAC transcription factors in common bean. PMID:27604581
Genome-Wide Analysis of APETALA2/Ethylene-Responsive Factor (AP2/ERF) Gene Family in Barley (Hordeum vulgare L.). PMID:27598245
Differential morphology and transcriptome profile between the incompletely fused carpels ovary and its wild-type in maize. PMID:27587343
Genome-wide identification and characterization of the NF-Y gene family in grape (vitis vinifera L.). PMID:27516172
Transcriptome Analysis of Storage Roots and Fibrous Roots of the Traditional Medicinal Herb Callerya speciosa (Champ.) ScHot. PMID:27486800
Identification and Comparative Analysis of Differential Gene Expression in Soybean Leaf Tissue under Drought and Flooding Stress Revealed by RNA-Seq. PMID:27486466
Insight into the AP2/ERF transcription factor superfamily in sesame and expression profiling of DREB subfamily under drought stress. PMID:27475988
CicerTransDB 1.0: a resource for expression and functional study of chickpea transcription factors. PMID:27472917
Transcription Factors and Plants Response to Drought Stress: Current Understanding and Future Directions. PMID:27471513
Low Temperature and Short-Term High-CO2 Treatment in Postharvest Storage of Table Grapes at Two Maturity Stages: Effects on Transcriptome Profiling. PMID:27468290
Genome-wide identification of soybean WRKY transcription factors in response to salt stress. PMID:27386364
Transcriptome Profiling Revealed Stress-Induced and Disease Resistance Genes Up-Regulated in PRSV Resistant Transgenic Papaya. PMID:27379138
Genome-wide transcriptome analysis of female-sterile rice ovule shed light on its abortive mechanism. PMID:27357232
SorghumFDB: sorghum functional genomics database with multidimensional network analysis. PMID:27352859
Identification of an NAC Transcription Factor Family by Deep Transcriptome Sequencing in Onion (Allium cepa L.). PMID:27331904
Comprehensive analysis of multi-tissue transcriptome data and the genome-wide investigation of GRAS family in Phyllostachys edulis. PMID:27325361
A comprehensive view of the web-resources related to sericulture. PMID:27307138
Evolution of Gene Duplication in Plants. PMID:27288366
Sucrose and ABA regulate starch biosynthesis in maize through a novel transcription factor, ZmEREB156. PMID:27282997
A Collection of Conserved Noncoding Sequences to Study Gene Regulation in Flowering Plants. PMID:27261064
Global gene expression analysis using RNA-seq uncovered a new role for SR1/CAMTA3 transcription factor in salt stress. PMID:27251464
Integrated Metabolo-Transcriptomics Reveals Fusarium Head Blight Candidate Resistance Genes in Wheat QTL-Fhb2. PMID:27232496
Over-expression of a NAC 67 transcription factor from finger millet (Eleusine coracana L.) confers tolerance against salinity and drought stress in rice. PMID:27213684
Genome- wide characterization of Nuclear Factor Y (NF-Y) gene family of sorghum [Sorghum bicolor (L.) Moench]: a bioinformatics approach. PMID:27186017
An Integrated Bioinformatics Analysis Reveals Divergent Evolutionary Pattern of Oil Biosynthesis in High- and Low-Oil Plants. PMID:27159078
Genome-wide investigation and expression analysis of AP2-ERF gene family in salt tolerant common bean. PMID:27152109
Use of transcriptomics and co-expression networks to analyze the interconnections between nitrogen assimilation and photorespiratory metabolism. PMID:27117340
Genome-Wide Identification of the Transcription Factors Involved in Citrus Fruit Ripening from the Transcriptomes of a Late-Ripening Sweet Orange Mutant and Its Wild Type. PMID:27104786
Learning from Co-expression Networks: Possibilities and Challenges. PMID:27092161
Transcription factors in microalgae: genome-wide prediction and comparative analysis. PMID:27067009
Transcriptome Response Mediated by Cold Stress in Lotus japonicus. PMID:27066029
Genome-Wide Analysis of the Musa WRKY Gene Family: Evolution and Differential Expression during Development and Stress. PMID:27014321
SM-TF: A structural database of small molecule-transcription factor complexes. PMID:27010673
Molecular mechanism of ethylene stimulation of latex yield in rubber tree (Hevea brasiliensis) revealed by de novo sequencing and transcriptome analysis. PMID:27008913
RNA-Seq-Mediated Transcriptome Analysis of a Fiberless Mutant Cotton and Its Possible Origin Based on SNP Markers. PMID:26990639
Spatiotemporal transcriptome provides insights into early fruit development of tomato (Solanum lycopersicum). PMID:26988970
Molecular evolution and gene expression differences within the HD-Zip transcription factor family of Zea mays L. PMID:26979310
Genomic identification of WRKY transcription factors in carrot (Daucus carota) and analysis of evolution and homologous groups for plants. PMID:26975939
Sequencing and comparative analyses of the genomes of zoysiagrasses. PMID:26975196
ChlamyNET: a Chlamydomonas gene co-expression network reveals global properties of the transcriptome and the early setup of key co-expression patterns in the green lineage. PMID:26968660
A Drought-Inducible Transcription Factor Delays Reproductive Timing in Rice. PMID:26945049
De Novo Transcriptome Analysis of Medicinally Important Plantago ovata Using RNA-Seq. PMID:26943165
Comparative cell-specific transcriptomics reveals differentiation of C4 photosynthesis pathways in switchgrass and other C4 lineages. PMID:26896851
Gene Structures, Evolution and Transcriptional Profiling of the WRKY Gene Family in Castor Bean (Ricinus communis L.). PMID:26849139
De Novo Assembled Wheat Transcriptomes Delineate Differentially Expressed Host Genes in Response to Leaf Rust Infection. PMID:26840746
Genome-Wide Investigation of MicroRNAs and Their Targets in Response to Freezing Stress in Medicago sativa L., Based on High-Throughput Sequencing. PMID:26801649
The Eucalyptus grandis NBS-LRR Gene Family: Physical Clustering and Expression Hotspots. PMID:26793216
Transcriptomic Analysis of Tea Plant Responding to Drought Stress and Recovery. PMID:26788738
Transcriptome Profiling of Wild Arachis from Water-Limited Environments Uncovers Drought Tolerance Candidate Genes. PMID:26752807
Network-Based Comparative Analysis of Arabidopsis Immune Responses to Golovinomyces orontii and Botrytis cinerea Infections. PMID:26750561
Genome-wide analysis of tomato NF-Y factors and their role in fruit ripening. PMID:26742635
Extensive Transcriptome Changes During Natural Onset and Release of Vegetative Bud Dormancy in Populus. PMID:26734012
Bioinformatic landscapes for plant transcription factor system research. PMID:26719053
Transcriptional regulatory networks in Arabidopsis thaliana during single and combined stresses. PMID:26681689
Kiwifruit Information Resource (KIR): a comparative platform for kiwifruit genomics. PMID:26656885
Global analysis of WRKY transcription factor superfamily in Setaria identifies potential candidates involved in abiotic stress signaling. PMID:26635818
Transcriptomic and anatomical complexity of primary, seminal, and crown roots highlight root type-specific functional diversity in maize (Zea mays L.). PMID:26628518
Comparative Genomics of NAC Transcriptional Factors in Angiosperms: Implications for the Adaptation and Diversification of Flowering Plants. PMID:26569117
The WRKY transcription factor family and senescence in switchgrass. PMID:26552372
Genomic Foundation of Starch-to-Lipid Switch in Oleaginous Chlorella spp. PMID:26486592
Dormancy-associated MADS-box genes and microRNAs jointly control dormancy transition in pear (Pyrus pyrifolia white pear group) flower bud. PMID:26466664
Extensive tissue-specific transcriptomic plasticity in maize primary roots upon water deficit. PMID:26463995
High-Resolution Profiling of a Synchronized Diurnal Transcriptome from Chlamydomonas reinhardtii Reveals Continuous Cell and Metabolic Differentiation. PMID:26432862
Gossypium barbadense genome sequence provides insight into the evolution of extra-long staple fiber and specialized metabolites. PMID:26420475
Comprehensive transcriptome analysis of Crocus sativus for discovery and expression of genes involved in apocarotenoid biosynthesis. PMID:26370545
Deciphering Cis-Regulatory Element Mediated Combinatorial Regulation in Rice under Blast Infected Condition. PMID:26327607
Changes in the Common Bean Transcriptome in Response to Secreted and Surface Signal Molecules of Rhizobium etli. PMID:26282238
Chiba Tendril-Less locus determines tendril organ identity in melon (Cucumis melo L.) and potentially encodes a tendril-specific TCP homolog. PMID:26275436
An advanced draft genome assembly of a desi type chickpea (Cicer arietinum L.). PMID:26259924
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy. PMID:26243257
Transcriptome-based discovery of AP2/ERF transcription factors related to temperature stress in tea plant (Camellia sinensis). PMID:26233577
Genome-wide characterization and expression analysis of common bean bHLH transcription factors in response to excess salt concentration. PMID:26193947
Transcriptional profiles of Arabidopsis stomataless mutants reveal developmental and physiological features of life in the absence of stomata. PMID:26157447
Developmental profiling of gene expression in soybean trifoliate leaves and cotyledons. PMID:26149852
Prunus transcription factors: breeding perspectives. PMID:26124770
Dynamic transcriptional profiling provides insights into tuberous root development in Rehmannia glutinosa. PMID:26113849
Comparative analysis of transcription factor gene families from Papaver somniferum: identification of regulatory factors involved in benzylisoquinoline alkaloid biosynthesis. PMID:26108744
Global transcriptome analysis profiles metabolic pathways in traditional herb Astragalus membranaceus Bge. var. mongolicus (Bge.) Hsiao. PMID:26099797
Temporal transcriptome profiling reveals expression partitioning of homeologous genes contributing to heat and drought acclimation in wheat (Triticum aestivum L.). PMID:26092253
Selection for Improved Energy Use Efficiency and Drought Tolerance in Canola Results in Distinct Transcriptome and Epigenome Changes. PMID:26082400
Cross-Species Network Analysis Uncovers Conserved Nitrogen-Regulated Network Modules in Rice. PMID:26045464
De novo transcriptome characterization and gene expression profiling of the desiccation tolerant moss Bryum argenteum following rehydration. PMID:26016800
The Basic/Helix-Loop-Helix Protein Family in Gossypium: Reference Genes and Their Evolution during Tetraploidization. PMID:25992947
Development and Characterization of Transcription Factor Gene-Derived Microsatellite (TFGM) Markers in Medicago truncatula and Their Transferability in Leguminous and Non-Leguminous Species. PMID:25988608
GraP: platform for functional genomics analysis of Gossypium raimondii. PMID:25982315
Comprehensive analysis of transcriptome response to salinity stress in the halophytic turf grass Sporobolus virginicus. PMID:25954282
Transcriptional regulation of the paper mulberry under cold stress as revealed by a comprehensive analysis of transcription factors. PMID:25928853
Identification and analysis of unitary loss of long-established protein-coding genes in Poaceae shows evidences for biased gene loss and putatively functional transcription of relics. PMID:25927997
Next-generation sequencing (NGS) transcriptomes reveal association of multiple genes and pathways contributing to secondary metabolites accumulation in tuberous roots of Aconitum heterophyllum Wall. PMID:25904478
Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement. PMID:25893781
Genome-wide evolutionary characterization and analysis of bZIP transcription factors and their expression profiles in response to multiple abiotic stresses in Brachypodium distachyon. PMID:25887221
Measuring semantic similarities by combining gene ontology annotations and gene co-function networks. PMID:25886899
Combinatorial activities of SHORT VEGETATIVE PHASE and FLOWERING LOCUS C define distinct modes of flowering regulation in Arabidopsis. PMID:25853185
In silico analysis of the genes encoding proteins that are involved in the biosynthesis of the RMS/MAX/D pathway revealed new roles of Strigolactones in plants. PMID:25815594
Identification and expression analysis of the SQUAMOSA promoter-binding protein (SBP)-box gene family in Prunus mume. PMID:25810323
RNA sequencing of laser-capture microdissected compartments of the maize kernel identifies regulatory modules associated with endosperm cell differentiation. PMID:25783031
Identification and mode of inheritance of quantitative trait loci for secondary metabolite abundance in tomato. PMID:25770107
Genome-wide characterization of developmental stage- and tissue-specific transcription factors in wheat. PMID:25766308
An Arabidopsis Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors. PMID:25750178
Discovery of core biotic stress responsive genes in Arabidopsis by weighted gene co-expression network analysis. PMID:25730421
Knockdown of a JmjC domain-containing gene JMJ524 confers altered gibberellin responses by transcriptional regulation of GRAS protein lacking the DELLA domain genes in tomato. PMID:25680796
Genome-wide analysis of Dof family transcription factors and their responses to abiotic stresses in Chinese cabbage. PMID:25636232
Regulation of oncogene expression in T-DNA-transformed host plant cells. PMID:25615824
Prioritization of candidate genes in QTL regions based on associations between traits and biological processes. PMID:25492368
Overexpression of tomato SlNAC1 transcription factor alters fruit pigmentation and softening. PMID:25491370
Genome-wide identification and expression analysis of the CaNAC family members in chickpea during development, dehydration and ABA treatments. PMID:25479253
Transcriptome analysis of ripe and unripe fruit tissue of banana identifies major metabolic networks involved in fruit ripening process. PMID:25442405
Control of cotton fibre elongation by a homeodomain transcription factor GhHOX3. PMID:25413731
The role of cis regulatory evolution in maize domestication. PMID:25375861
PLAZA 3.0: an access point for plant comparative genomics. PMID:25324309
Structural features of diverse Pin-II proteinase inhibitor genes from Capsicum annuum. PMID:25269396
De novo transcriptome sequence assembly and identification of AP2/ERF transcription factor related to abiotic stress in parsley (Petroselinum crispum). PMID:25268141
AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors. PMID:25262351
Maize and millet transcription factors annotated using comparative genomic and transcriptomic data. PMID:25261191
Genome-wide identification of novel long non-coding RNAs in Populus tomentosa tension wood, opposite wood and normal wood xylem by RNA-seq. PMID:25230698
Global transcriptomics identification and analysis of transcriptional factors in different tissues of the paper mulberry. PMID:25213425
Genome-wide investigation and transcriptome analysis of the WRKY gene family in Gossypium. PMID:25190108
A robust chromatin immunoprecipitation protocol for studying transcription factor-DNA interactions and histone modifications in wood-forming tissue. PMID:25144269
The potential of transcription factor-based genetic engineering in improving crop tolerance to drought. PMID:25118806
De novo assembly and characterization of the transcriptome in the desiccation-tolerant moss Syntrichia caninervis. PMID:25086984
The abiotic stress-responsive NAC-type transcription factor SlNAC4 regulates salt and drought tolerance and stress-related genes in tomato (Solanum lycopersicum). PMID:25063324
De novo transcriptome assembly from inflorescence of Orchis italica: analysis of coding and non-coding transcripts. PMID:25025767
De novo sequencing and comparative analysis of holy and sweet basil transcriptomes. PMID:25015319
Inference of transcriptional networks in Arabidopsis through conserved noncoding sequence analysis. PMID:24989046
Transcriptomic landscape of prophase I sunflower male meiocytes. PMID:24982667
The Chlamydomonas genome project: a decade on. PMID:24950814
Quantitative phosphoproteomic profiling of fiber differentiation and initiation in a fiberless mutant of cotton. PMID:24923550
Large-scale phosphoproteome analysis in seedling leaves of Brachypodium distachyon L. PMID:24885693
Transcriptome-wide identification of bread wheat WRKY transcription factors in response to drought stress. PMID:24748053
Identification of 32 full-length NAC transcription factors in ramie (Boehmeria nivea L. Gaud) and characterization of the expression pattern of these genes. PMID:24691727
PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database PubMed citations: 166.

166 articles citing: PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database

Selection and functional identification of Dof genes expressed in response to nitrogen in Populus simonii × Populus nigra. PMID:35891966
ABERRANT PANICLE ORGANIZATION2 controls multiple steps in panicle formation through common direct-target genes. PMID:35556145
Transcriptome Analysis of Developing Wheat Grains at Rapid Expanding Phase Reveals Dynamic Gene Expression Patterns. PMID:35205147
RNA-seq analysis reveals the genes/pathways responsible for genetic plasticity of rice to varying environmental conditions on direct-sowing and transplanting. PMID:35145168
Genome-Wide Identification of Stress-Associated Proteins (SAPs) Encoding A20/AN1 Zinc Finger in Almond (Prunus dulcis) and Their Differential Expression during Fruit Development. PMID:35009120
Comparative Transcriptome Analysis Identifies Key Regulatory Genes Involved in Anthocyanin Metabolism During Flower Development in Lycoris radiata. PMID:34975946
Rapidly evolving genetic features for desert adaptations in Stipagrostis pennata. PMID:34814836
Comprehensive Analyses of NAC Transcription Factor Family in Almond (Prunus dulcis) and Their Differential Gene Expression during Fruit Development. PMID:34686009
Identification of miRNAs-mediated seed and stone-hardening regulatory networks and their signal pathway of GA-induced seedless berries in grapevine (V. vinifera L.). PMID:34587914
The Role of INAPERTURATE POLLEN1 as a Pollen Aperture Factor Is Conserved in the Basal Eudicot Eschscholzia californica (Papaveraceae). PMID:34305989
Transcriptome and proteome of the corm, leaf and flower of Hypoxis hemerocallidea (African potato). PMID:34283859
Comparative Transcriptome Analysis Reveals Regulatory Networks during the Maize Ear Shank Elongation Process. PMID:34209973
Genome-wide identification and expression analysis of the bHLH transcription factor family and its response to abiotic stress in sorghum [Sorghum bicolor (L.) Moench]. PMID:34090335
Comprehensive molecular dissection of TIFY Transcription factors reveal their dynamic responses to biotic and abiotic stress in wheat (Triticum aestivum L.). PMID:33958607
Genome-wide identification, characterization, and expression analysis of the NAC transcription factor family in orchardgrass (Dactylis glomerata L.). PMID:33711917
Transcriptomic Analysis of the Anthocyanin Biosynthetic Pathway Reveals the Molecular Mechanism Associated with Purple Color Formation in Dendrobium Nestor. PMID:33540822
Genome-Wide Identification and Expression Profiling Analysis of the Trihelix Gene Family Under Abiotic Stresses in Medicago truncatula. PMID:33238556
Genome-Wide Analysis, Characterization, and Expression Profile of the Basic Leucine Zipper Transcription Factor Family in Pineapple. PMID:32455125
Dynamics of Global Gene Expression and Regulatory Elements in Growing Brachypodium Root System. PMID:32341392
Full-length transcriptome sequencing provides insights into the evolution of apocarotenoid biosynthesis in Crocus sativus. PMID:32280432
A Novel Sweetpotato WRKY Transcription Factor, IbWRKY2, Positively Regulates Drought and Salt Tolerance in Transgenic Arabidopsis. PMID:32230780
GmWRKY45 Enhances Tolerance to Phosphate Starvation and Salt Stress, and Changes Fertility in Transgenic Arabidopsis. PMID:32082335
Genome-wide analysis of the NAC transcription factor family in broomcorn millet (Panicum miliaceum L.) and expression analysis under drought stress. PMID:32000662
Genome-Wide Analysis of the NAC Domain Transcription Factor Gene Family in Theobroma cacao. PMID:31905649
PlantRegMap: charting functional regulatory maps in plants. PMID:31701126
Genomic Organization of the B3-Domain Transcription Factor Family in Grapevine (Vitis vinifera L.) and Expression during Seed Development in Seedless and Seeded Cultivars. PMID:31540007
A comprehensive analysis of the B3 superfamily identifies tissue-specific and stress-responsive genes in chickpea (Cicer arietinum L.). PMID:31497464
Genome-wide identification and expression analysis of the trihelix transcription factor family in tartary buckwheat (Fagopyrum tataricum). PMID:31390980
GCR1 and GPA1 coupling regulates nitrate, cell wall, immunity and light responses in Arabidopsis. PMID:30967583
Genome-wide analysis of the NAC transcription factor family in Tartary buckwheat (Fagopyrum tataricum). PMID:30727951
Genome wide identification of the trihelix transcription factors and overexpression of Gh_A05G2067 (GT-2), a novel gene contributing to increased drought and salt stresses tolerance in cotton. PMID:30629305
A Robust Auxin Response Network Controls Embryo and Suspensor Development through a Basic Helix Loop Helix Transcriptional Module. PMID:30573473
AlNAC4 Transcription Factor From Halophyte Aeluropus lagopoides Mitigates Oxidative Stress by Maintaining ROS Homeostasis in Transgenic Tobacco. PMID:30420862
Comprehensive Transcriptome Profiling and Identification of Potential Genes Responsible for Salt Tolerance in Tall Fescue Leaves under Salinity Stress. PMID:30248970
Can WRKY transcription factors help plants to overcome environmental challenges? PMID:30235398
The transcription factor OsbHLH035 mediates seed germination and enables seedling recovery from salt stress through ABA-dependent and ABA-independent pathways, respectively. PMID:30203325
Robust increase of leaf size by Arabidopsis thaliana GRF3-like transcription factors under different growth conditions. PMID:30194309
Identification and comparative analysis of microRNAs from tomato varieties showing contrasting response to ToLCV infections. PMID:29515314
Potentials, Challenges, and Genetic and Genomic Resources for Sugarcane Biomass Improvement. PMID:29503654
Transcriptome analysis of WRKY gene family in Oryza officinalis Wall ex Watt and WRKY genes involved in responses to Xanthomonas oryzae pv. oryzae stress. PMID:29190793
Global transcriptome analysis of the maize (Zea mays L.) inbred line 08LF during leaf senescence initiated by pollination-prevention. PMID:28973044
Genome-wide characterization of the WRKY gene family in radish (Raphanus sativus L.) reveals its critical functions under different abiotic stresses. PMID:28819820
Genome-wide Analysis and Expression Divergence of the Trihelix family in Brassica Rapa: Insight into the Evolutionary Patterns in Plants. PMID:28743951
Genomewide Expression and Functional Interactions of Genes under Drought Stress in Maize. PMID:28326315
Transcriptome wide identification, phylogenetic analysis, and expression profiling of zinc-finger transcription factors from Crocus sativus L. PMID:28247040
The OsMYB30 Transcription Factor Suppresses Cold Tolerance by Interacting with a JAZ Protein and Suppressing β-Amylase Expression. PMID:28062835
PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants. PMID:27924042
Transcription factors involved in drought tolerance and their possible role in developing drought tolerant cultivars with emphasis on wheat (Triticum aestivum L.). PMID:27738714
Drought response transcriptomes are altered in poplar with reduced tonoplast sucrose transporter expression. PMID:27641356
Transcriptome profiling of developmental leaf senescence in sorghum (Sorghum bicolor). PMID:27586543
Overexpression of the Eggplant (Solanum melongena) NAC Family Transcription Factor SmNAC Suppresses Resistance to Bacterial Wilt. PMID:27528282
Elucidating and mining the Tulipa and Lilium transcriptomes. PMID:27387304
WRKY transcription factor genes in wild rice Oryza nivara. PMID:27345721
A comprehensive view of the web-resources related to sericulture. PMID:27307138
SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility. PMID:27137384
Comprehensive Analysis of ABA Effects on Ethylene Biosynthesis and Signaling during Tomato Fruit Ripening. PMID:27100326
Genome-wide identification of WRKY family genes in peach and analysis of WRKY expression during bud dormancy. PMID:26951048
The banana fruit Dof transcription factor MaDof23 acts as a repressor and interacts with MaERF9 in regulating ripening-related genes. PMID:26889012
De novo Transcriptome Sequencing and Development of Abscission Zone-Specific Microarray as a New Molecular Tool for Analysis of Tomato Organ Abscission. PMID:26834766
Transcriptional dynamics of the developing sweet cherry (Prunus avium L.) fruit: sequencing, annotation and expression profiling of exocarp-associated genes. PMID:26504533
Genomic Foundation of Starch-to-Lipid Switch in Oleaginous Chlorella spp. PMID:26486592
Evolution and divergence of SBP-box genes in land plants. PMID:26467431
Using the combined analysis of transcripts and metabolites to propose key genes for differential terpene accumulation across two regions. PMID:26444528
The auxin response factor gene family in banana: genome-wide identification and expression analyses during development, ripening, and abiotic stress. PMID:26442055
Whole-Genome Resequencing Reveals Extensive Natural Variation in the Model Green Alga Chlamydomonas reinhardtii. PMID:26392080
G-protein α-subunit (GPA1) regulates stress, nitrate and phosphate response, flavonoid biosynthesis, fruit/seed development and substantially shares GCR1 regulation in A. thaliana. PMID:26346778
Germin-like protein 2 gene promoter from rice is responsive to fungal pathogens in transgenic potato plants. PMID:26277722
A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice. PMID:26261267
Phylogenomics databases for facilitating functional genomics in rice. PMID:26223238
A novel NAP member GhNAP is involved in leaf senescence in Gossypium hirsutum. PMID:25991739
Multiple elements controlling the expression of wheat high molecular weight glutenin paralogs. PMID:25893709
Genome-wide evolutionary characterization and analysis of bZIP transcription factors and their expression profiles in response to multiple abiotic stresses in Brachypodium distachyon. PMID:25887221
REGULATOR: a database of metazoan transcription factors and maternal factors for developmental studies. PMID:25880930
Global analysis of the Gossypium hirsutum L. Transcriptome during leaf senescence by RNA-Seq. PMID:25849479
Upstream regulatory architecture of rice genes: summarizing the baseline towards genus-wide comparative analysis of regulatory networks and allele mining. PMID:25844119
Genome-wide characterization of developmental stage- and tissue-specific transcription factors in wheat. PMID:25766308
An Arabidopsis Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors. PMID:25750178
Nonuniform gene expression pattern detected along the longitudinal axis in the matured rice leaf. PMID:25619793
Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress. PMID:25549671
Transcriptional analyses of natural leaf senescence in maize. PMID:25532107
Identification of potential transcriptional regulators of actinorhizal symbioses in Casuarina glauca and Alnus glutinosa. PMID:25492470
Transcriptome sequencing of two wild barley (Hordeum spontaneum L.) ecotypes differentially adapted to drought stress reveals ecotype-specific transcripts. PMID:25408241
Genome-wide transcriptome profiles of rice hybrids and their parents. PMID:25402644
Identification of transcription factor genes and their correlation with the high diversity of stramenopiles. PMID:25375671
Maize and millet transcription factors annotated using comparative genomic and transcriptomic data. PMID:25261191
A trihelix DNA binding protein counterbalances hypoxia-responsive transcriptional activation in Arabidopsis. PMID:25226037
Genome-wide annotation of the soybean WRKY family and functional characterization of genes involved in response to Phakopsora pachyrhizi infection. PMID:25201117
Comparative transcriptome analysis of leaves and roots in response to sudden increase in salinity in Brassica napus by RNA-seq. PMID:25177691
Basic leucine zipper family in barley: genome-wide characterization of members and expression analysis. PMID:25173685
Population genomics of Populus trichocarpa identifies signatures of selection and adaptive trait associations. PMID:25151358
Small RNAs as important regulators for the hybrid vigour of super-hybrid rice. PMID:25129133
An apple B-box protein, MdCOL11, is involved in UV-B- and temperature-induced anthocyanin biosynthesis. PMID:25074586
Dynamic transcriptome landscape of maize embryo and endosperm development. PMID:25037214
Gene response in rice plants treated with continuous fog influenced by pH, was similar to that treated with biotic stress. PMID:24987489
Sequence and expression analyses of ethylene response factors highly expressed in latex cells from Hevea brasiliensis. PMID:24971876
Expression patterns of WRKY genes in di-haploid Populus simonii × P. nigra in response to salinity stress revealed by quantitative real-time PCR and RNA sequencing. PMID:24969399
Genome-wide identification of transcription factors and transcription-factor binding sites in oleaginous microalgae Nannochloropsis. PMID:24965723
Study of seed hair growth in Populus tomentosa, an important character of female floral bud development. PMID:24929561
Transcriptome dynamics of a desert poplar (Populus pruinosa) in response to continuous salinity stress. PMID:24913126
Genome-wide analysis of the distribution of AP2/ERF transcription factors reveals duplication and CBFs genes elucidate their potential function in Brassica oleracea. PMID:24888752
Evolutionary history of trihelix family and their functional diversification. PMID:24864043
Genomewide analysis of LATERAL ORGAN BOUNDARIES Domain gene family in Zea mays. PMID:24840825
Exploiting a Reference Genome in Terms of Duplications: The Network of Paralogs and Single Copy Genes in Arabidopsis thaliana. PMID:24833233
Comprehensive analysis of CCCH-type zinc finger gene family in citrus (Clementine mandarin) by genome-wide characterization. PMID:24820208
Genome-wide analysis of the bZIP transcription factors in cucumber. PMID:24760072
Nitrogen-Sparing Mechanisms in Chlamydomonas Affect the Transcriptome, the Proteome, and Photosynthetic Metabolism. PMID:24748044
Expression patterns of ERF genes underlying abiotic stresses in di-haploid Populus simonii × P. nigra. PMID:24737991
Systems analysis of transcriptome data provides new hypotheses about Arabidopsis root response to nitrate treatments. PMID:24570678
In silico identification of transcription factors in Medicago sativa using available transcriptomic resources. PMID:24556904
A systems-wide comparison of red rice (Oryza longistaminata) tissues identifies rhizome specific genes and proteins that are targets for cultivated rice improvement. PMID:24521476
ComPlEx: conservation and divergence of co-expression networks in A. thaliana, Populus and O. sativa. PMID:24498971
Analyses of hypomethylated oil palm gene space. PMID:24497974
Combining metabolomics and transcriptomics to characterize tanshinone biosynthesis in Salvia miltiorrhiza. PMID:24467826
Functional analysis of water stress-responsive soybean GmNAC003 and GmNAC004 transcription factors in lateral root development in arabidopsis. PMID:24465446
Genome-wide evolutionary characterization and expression analyses of WRKY family genes in Brachypodium distachyon. PMID:24453041
Transcriptome-wide profiling and expression analysis of transcription factor families in a liverwort, Marchantia polymorpha. PMID:24365221
MicroRNA156: a potential graft-transmissible microRNA that modulates plant architecture and tuberization in Solanum tuberosum ssp. andigena. PMID:24351688
Genome-wide analysis of the bHLH transcription factor family in Chinese cabbage (Brassica rapa ssp. pekinensis). PMID:24241166
Comprehensive insights on how 2,4-dichlorophenoxyacetic acid retards senescence in post-harvest citrus fruits using transcriptomic and proteomic approaches. PMID:24215076
Unlocking Triticeae genomics to sustainably feed the future. PMID:24204022
PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors. PMID:24174544
Generation and analysis of a large-scale expressed sequence Tag database from a full-length enriched cDNA library of developing leaves of Gossypium hirsutum L. PMID:24146870
Genome-wide analysis of the Dof transcription factor gene family reveals soybean-specific duplicable and functional characteristics. PMID:24098807
Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves. PMID:24076976
Comparative analysis of latex transcriptome reveals putative molecular mechanisms underlying super productivity of Hevea brasiliensis. PMID:24066172
Transcriptome profiling of Gossypium barbadense inoculated with Verticillium dahliae provides a resource for cotton improvement. PMID:24053558
Genome-wide analysis of the AP2/ERF transcription factor superfamily in Chinese cabbage (Brassica rapa ssp. pekinensis). PMID:23972083
Genome-scale transcriptomic insights into early-stage fruit development in woodland strawberry Fragaria vesca. PMID:23898027
Genome-wide transcriptomic analysis of the sporophyte of the moss Physcomitrella patens. PMID:23888066
TCW: transcriptome computational workbench. PMID:23874959
Genome-wide annotation of genes and noncoding RNAs of foxtail millet in response to simulated drought stress by deep sequencing. PMID:23860794
Populus euphratica: the transcriptomic response to drought stress. PMID:23857471
Identification and characterization of RcMADS1, an AGL24 ortholog from the holoparasitic plant Rafflesia cantleyi Solms-Laubach (Rafflesiaceae). PMID:23840638
Purification and characterization of transcription factors. PMID:23832591
The auxin response factor transcription factor family in soybean: genome-wide identification and expression analyses during development and water stress. PMID:23810914
Transcriptome and proteome data reveal candidate genes for pollinator attraction in sexually deceptive orchids. PMID:23734209
Comprehensive genome-wide survey, genomic constitution and expression profiling of the NAC transcription factor family in foxtail millet (Setaria italica L.). PMID:23691254
Genome-wide identification and evolutionary and expression analyses of MYB-related genes in land plants. PMID:23690543
Genome-wide survey and expression analysis of the MADS-box gene family in soybean. PMID:23559340
Transcriptional profiling of rice early response to Magnaporthe oryzae identified OsWRKYs as important regulators in rice blast resistance. PMID:23544090
Transcriptome-wide identification of R2R3-MYB transcription factors in barley with their boron responsive expression analysis. PMID:23539153
Next-generation sequencing-based transcriptome profiling analysis of Pohlia nutans reveals insight into the stress-relevant genes in Antarctic moss. PMID:23532411
Promzea: a pipeline for discovery of co-regulatory motifs in maize and other plant species and its application to the anthocyanin and phlobaphene biosynthetic pathways and the Maize Development Atlas. PMID:23497159
Comparative Analysis of the Symbiotic Efficiency of Medicago truncatula and Medicago sativa under Phosphorus Deficiency. PMID:23459233
Anatomical and transcriptional dynamics of maize embryonic leaves during seed germination. PMID:23431200
Genome-wide identification and analysis of the B3 superfamily of transcription factors in Brassicaceae and major crop plants. PMID:23377560
TreeTFDB: an integrative database of the transcription factors from six economically important tree crops for functional predictions and comparative and functional genomics. PMID:23284086
The Rice Genome Knowledgebase (RGKbase): an annotation database for rice comparative genomics and evolutionary biology. PMID:23193278
RiceFREND: a platform for retrieving coexpressed gene networks in rice. PMID:23180784
Genome, functional gene annotation, and nuclear transformation of the heterokont oleaginous alga Nannochloropsis oceanica CCMP1779. PMID:23166516
The rice B-box zinc finger gene family: genomic identification, characterization, expression profiling and diurnal analysis. PMID:23118960
Conserved noncoding sequences highlight shared components of regulatory networks in dicotyledonous plants. PMID:23110901
Regulation of the grapevine polygalacturonase-inhibiting protein encoding gene: expression pattern, induction profile and promoter analysis. PMID:22932820
VpWRKY3, a biotic and abiotic stress-related transcription factor from the Chinese wild Vitis pseudoreticulata. PMID:22847334
Characterizing regulatory and functional differentiation between maize mesophyll and bundle sheath cells by transcriptomic analysis. PMID:22829318
Large-scale collection and annotation of gene models for date palm (Phoenix dactylifera, L.). PMID:22736259
The WRKY transcription factor family in Brachypodium distachyon. PMID:22726208
A maize stress-responsive NAC transcription factor, ZmSNAC1, confers enhanced tolerance to dehydration in transgenic Arabidopsis. PMID:22610487
Genome-wide analysis of WRKY transcription factors in Solanum lycopersicum. PMID:22570076
In silico analyses of pericycle cell populations reinforce their relation with associated vasculature in Arabidopsis. PMID:22527390
Is there a role for trihelix transcription factors in embryo maturation? PMID:22353863
Functional annotation of the transcriptome of Sorghum bicolor in response to osmotic stress and abscisic acid. PMID:22008187
Generation, annotation and analysis of first large-scale expressed sequence tags from developing fiber of Gossypium barbadense L. PMID:21829504
In silico analysis of transcription factor repertoires and prediction of stress-responsive transcription factors from six major gramineae plants. PMID:21729923
Coping with stresses: roles of calcium- and calcium/calmodulin-regulated gene expression. PMID:21642548
The WRKY transcription factor OsWRKY78 regulates stem elongation and seed development in rice. PMID:21547461
An Arabidopsis Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors PubMed citations: 60.

60 articles citing: An Arabidopsis Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors

Genome-wide identification and characterization of GATA family genes in wheat. PMID:35896980
Dissecting the Genetic Structure of Maize Leaf Sheaths at Seedling Stage by Image-Based High-Throughput Phenotypic Acquisition and Characterization. PMID:35837446
Evaluating the performance of random forest and iterative random forest based methods when applied to gene expression data. PMID:35832622
Identification of essential element determining fruit-specific transcriptional activity in the tomato HISTIDINE DECARBOXYLASE A gene promoter. PMID:35739429
OsAPL controls the nutrient transport systems in the leaf of rice (Oryza sativa L.). PMID:35699777
Quantitative Trait Loci and Transcriptome Analysis Reveal Genetic Basis of Fiber Quality Traits in CCRI70 RIL Population of Gossypium hirsutum. PMID:34975939
Variation in Gene Expression between Two Sorghum bicolor Lines Differing in Innate Immunity Response. PMID:34451580
The role of strigolactones in P deficiency induced transcriptional changes in tomato roots. PMID:34301182
Construction of Condition-Specific Gene Regulatory Network Using Kernel Canonical Correlation Analysis. PMID:34093651
Integrative inference of transcriptional networks in Arabidopsis yields novel ROS signalling regulators. PMID:33846597
Novel resistance strategies to soybean cyst nematode (SCN) in wild soybean. PMID:33846373
Genome-wide identification and function characterization of GATA transcription factors during development and in response to abiotic stresses and hormone treatments in pepper. PMID:33624251
Genome-Wide Association Study of Maize Aboveground Dry Matter Accumulation at Seedling Stage. PMID:33519889
Internetwork connectivity of molecular networks across species of life. PMID:33441907
A Comprehensive Toolkit for Quick and Easy Visualization of Marker Proteins, Protein-Protein Interactions and Cell Morphology in Marchantia polymorpha. PMID:33178238
Determinants of correlated expression of transcription factors and their target genes. PMID:33104784
SEGN: Inferring real-time gene networks mediating phenotypic plasticity. PMID:33005313
Transcriptome Analysis of Early Defenses in Rice against Fusarium fujikuroi. PMID:32910281
Genome-Wide Analysis Reveals Transcription Factors Regulated by Spider-Mite Feeding in Cucumber (Cucumis sativus). PMID:32796676
Transcriptome analysis of contrasting resistance to herbivory by Empoasca fabae in two shrub willow species and their hybrid progeny. PMID:32726362
Network-based approaches for understanding gene regulation and function in plants. PMID:32717108
Identification of small RNAs during cold acclimation in Arabidopsis thaliana. PMID:32600430
Reducing the nicotine content of tobacco by grafting with eggplant. PMID:32571218
Dissecting the phenotypic components and genetic architecture of maize stem vascular bundles using high-throughput phenotypic analysis. PMID:32569428
Meta Gene Regulatory Networks in Maize Highlight Functionally Relevant Regulatory Interactions. PMID:32184350
Developmental Analysis of Mimulus Seed Transcriptomes Reveals Functional Gene Expression Clusters and Four Imprinted, Endosperm-Expressed Genes. PMID:32161609
The Phenotype Paradox: Lessons From Natural Transcriptome Evolution on How to Engineer Plants. PMID:32133018
Hierarchical and Dynamic Regulation of Defense-Responsive Specialized Metabolism by WRKY and MYB Transcription Factors. PMID:32082343
Comparative transcriptome profiling provides insights into plant salt tolerance in seashore paspalum (Paspalum vaginatum). PMID:32033524
Comparative Transcriptome Analysis Provides Molecular Insights into the Interaction of Beet necrotic yellow vein virus and Beet soil-borne mosaic virus with Their Host Sugar Beet. PMID:31936258
Systematic identification of genes associated with plant growth-defense tradeoffs under JA signaling in Arabidopsis. PMID:31907627
Identification of Flower-Specific Promoters through Comparative Transcriptome Analysis in Brassica napus. PMID:31779216
PlantRegMap: charting functional regulatory maps in plants. PMID:31701126
Structure and DNA damage-dependent derepression mechanism for the XRE family member DG-DdrO. PMID:31410466
Transcriptome profiling of Gerbera hybrida reveals that stem bending is caused by water stress and regulation of abscisic acid. PMID:31331262
Gene network modules associated with abiotic stress response in tolerant rice genotypes identified by transcriptome meta-analysis. PMID:31286320
PropaNet: Time-Varying Condition-Specific Transcriptional Network Construction by Network Propagation. PMID:31258543
Transcriptional Regulation of Abscission Zones. PMID:31174352
PlaD: A Transcriptomics Database for Plant Defense Responses to Pathogens, Providing New Insights into Plant Immune System. PMID:30266409
Cotton CENTRORADIALIS/TERMINAL FLOWER 1/SELF-PRUNING genes functionally diverged to differentially impact plant architecture. PMID:30202979
Function, dynamics and evolution of network motif modules in integrated gene regulatory networks of worm and plant. PMID:29873777
Transcriptomics insights into the genetic regulation of root apical meristem exhaustion and determinate primary root growth in Pachycereus pringlei (Cactaceae). PMID:29867103
Genome Sequencing and Analysis of the Peanut B-Genome Progenitor (Arachis ipaensis). PMID:29774047
Developmental transcriptome analysis of floral transition in Rosa odorata var. gigantea. PMID:29736762
Transcript Profiling Identifies NAC-Domain Genes Involved in Regulating Wall Ingrowth Deposition in Phloem Parenchyma Transfer Cells of Arabidopsis thaliana. PMID:29599795
Conserved noncoding sequences conserve biological networks and influence genome evolution. PMID:29396421
Sorghum root-system classification in contrasting P environments reveals three main rooting types and root-architecture-related marker-trait associations. PMID:29351588
Inference of Transcription Regulatory Network in Low Phytic Acid Soybean Seeds. PMID:29250090
Transcriptomics and Alternative Splicing Analyses Reveal Large Differences between Maize Lines B73 and Mo17 in Response to Aphid Rhopalosiphum padi Infestation. PMID:29067035
Functional Profiling of Transcription Factor Genes in Neurospora crassa. PMID:28696922
Transcriptome Analysis of Cell Wall and NAC Domain Transcription Factor Genes during Elaeis guineensis Fruit Ripening: Evidence for Widespread Conservation within Monocot and Eudicot Lineages. PMID:28487710
Transcriptomic Analysis Reveals Mechanisms of Sterile and Fertile Flower Differentiation and Development in Viburnum macrocephalum f. keteleeri. PMID:28298915
Enhancing gene regulatory network inference through data integration with markov random fields. PMID:28145456
Reverse engineering gene regulatory networks from measurement with missing values. PMID:28127303
PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants. PMID:27924042
Doubled Haploid 'CUDH2107' as a Reference for Bulb Onion (Allium cepa L.) Research: Development of a Transcriptome Catalogue and Identification of Transcripts Associated with Male Fertility. PMID:27861615
The founder-cell transcriptome in the Arabidopsis apetala1 cauliflower inflorescence meristem. PMID:27809788
Differential Coexpression Analysis Reveals Extensive Rewiring of Arabidopsis Gene Coexpression in Response to Pseudomonas syringae Infection. PMID:27721457
Comprehensive analysis of multi-tissue transcriptome data and the genome-wide investigation of GRAS family in Phyllostachys edulis. PMID:27325361
Transcriptome Analysis of Soybean Leaf Abscission Identifies Transcriptional Regulators of Organ Polarity and Cell Fate. PMID:26925069
http://dx.doi.org/10.1093/nar/gkw982
http://dx.doi.org/10.1093/nar/gkt1016

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More detailed information about this field from each metasource.

annotation
metasource: Fairsharing.org
version: FAIRsharing.org: PlantTFDB; Plant Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.ex3fqk; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

binding motif
metasource: Fairsharing.org
version: FAIRsharing.org: PlantTFDB; Plant Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.ex3fqk; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

biological regulation
metasource: Fairsharing.org
version: FAIRsharing.org: PlantTFDB; Plant Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.ex3fqk; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

gene ontology enrichment
metasource: Fairsharing.org
version: FAIRsharing.org: PlantTFDB; Plant Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.ex3fqk; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

gene regulatory element
metasource: Fairsharing.org
version: FAIRsharing.org: PlantTFDB; Plant Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.ex3fqk; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

protein binding site prediction
metasource: Fairsharing.org
version: FAIRsharing.org: PlantTFDB; Plant Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.ex3fqk; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

sequence motif
metasource: Fairsharing.org
version: FAIRsharing.org: PlantTFDB; Plant Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.ex3fqk; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

transcription factor
metasource: Fairsharing.org
version: FAIRsharing.org: PlantTFDB; Plant Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.ex3fqk; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

transcription factor binding site prediction
metasource: Fairsharing.org
version: FAIRsharing.org: PlantTFDB; Plant Transcription Factor Database; DOI: https://doi.org/10.25504/FAIRsharing.ex3fqk; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

general plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

blast
metasource: re3data.org
version: re3data.org: Plant Transcription Factor Database; editing status 2021-08-24; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35D1V last accessed: 2022-11-04

genome sequences
metasource: re3data.org
version: re3data.org: Plant Transcription Factor Database; editing status 2021-08-24; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35D1V last accessed: 2022-11-04

life sciences
metasource: re3data.org
version: re3data.org: Plant Transcription Factor Database; editing status 2021-08-24; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35D1V last accessed: 2022-11-04

mirna
metasource: re3data.org
version: re3data.org: Plant Transcription Factor Database; editing status 2021-08-24; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R35D1V last accessed: 2022-11-04

plant biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:07.993116

transcription factors and regulatory sites
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:07.993116

gene expression
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:07.993116

gene transcripts
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:07.993116

binding motif biological regulation gene ontology enrichment gene regulatory element protein binding site prediction sequence motif transcription transcription factor binding site prediction plant plant blast genome sequences life sciences mirna plant biology transcription factors and regulatory sites gene expression gene transcripts

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Animal Transcription Factor Database

Database of Rice Transcription Factors

Transcription Factor Class

PlnTFDB

Saccharomyces cerevisiae Transcription Factor Database

Gene Transcription Regulation Database

HOmo sapiens transcription factor COmprehensive MOdel COllection

Regulatory Element Database for Drosophila

The Arabidopsis Gene Regulatory Information Server

FlyTF

FlyFactorSurvey

PAZAR

Yeast Searching for Transcriptional Regulators and Consensus Tracking

Database of Arabidopsis Transcription Factors

TRANSFAC®

RegulonDB

TRANSFAC

TransmiR

ReMap

TRANSCompel®