Database of Rice Transcription Factors
Names
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Database of Rice Transcription Factors
metasource: Fairsharing.org
version: FAIRsharing.org: DRTF; Database of Rice Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.d8j0eb; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
DRTF
metasource: Fairsharing.org
version: FAIRsharing.org: DRTF; Database of Rice Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.d8j0eb; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
Database of Rice Transcription Factors
metasource: Fairsharing.orgversion: FAIRsharing.org: DRTF; Database of Rice Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.d8j0eb; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
DRTF
metasource: Fairsharing.orgversion: FAIRsharing.org: DRTF; Database of Rice Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.d8j0eb; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
Database of Rice Transcription Factors
metasource: Fairsharing.orgversion: FAIRsharing.org: DRTF; Database of Rice Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.d8j0eb; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
DRTF
metasource: Fairsharing.orgversion: FAIRsharing.org: DRTF; Database of Rice Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.d8j0eb; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
DRTF contains 2025 putative transcription factors (TFs) in Oryza sativa L. ssp. indica and 2384 in ssp. japonica, distributed in 63 families, identified by computational prediction and manual curation. It includes detailed annotations of each TF including sequence features, functional domains, Gene Ontology assignment, chromosomal localization, EST and microarray expression information, as well as multiple sequence alignment of the DNA-binding domains for each TF family.
Description
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DRTF contains 2025 putative transcription factors (TFs) in Oryza sativa L. ssp. indica and 2384 in ssp. japonica, distributed in 63 families, identified by computational prediction and manual curation. It includes detailed annotations of each TF including sequence features, functional domains, Gene Ontology assignment, chromosomal localization, EST and microarray expression information, as well as multiple sequence alignment of the DNA-binding domains for each TF family.
metasource: Fairsharing.orgversion: FAIRsharing.org: DRTF; Database of Rice Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.d8j0eb; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
DRTF contains 2025 putative transcription factors (TFs) in Oryza sativa L. ssp. indica and 2384 in ssp. japonica, distributed in 63 families, identified by computational prediction and manual curation. It includes detailed annotations of each TF including sequence features, functional domains, Gene Ontology assignment, chromosomal localization, EST and microarray expression information, as well as multiple sequence alignment of the DNA-binding domains for each TF family. The database can be browsed and searched with a user-friendly web interface. DRTF is available at http://drtf.cbi.pku.edu.cn
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
http://drtf.cbi.pku.edu.cn/Webpage
More detailed information about this field from each metasource.
http://drtf.cbi.pku.edu.cn/
metasource: Fairsharing.orgversion: FAIRsharing.org: DRTF; Database of Rice Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.d8j0eb; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Licence:
Name: NIH Web Policies and NoticesLicence name
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NIH Web Policies and Notices
metasource: Fairsharing.orgversion: FAIRsharing.org: DRTF; Database of Rice Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.d8j0eb; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Licence URL
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https://www.nih.gov/web-policies-notices
metasource: Fairsharing.orgversion: FAIRsharing.org: DRTF; Database of Rice Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.d8j0eb; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
DRTF: a database of rice transcription factors
PMID: 16551659
metasource: Fairsharing.org
version: FAIRsharing.org: DRTF; Database of Rice Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.d8j0eb; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://bioinformatics.oxfordjournals.org/cgi/content/abstract/22/10/1286
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
DRTF: a database of rice transcription factors
PMID: 16551659
metasource: Fairsharing.org
version: FAIRsharing.org: DRTF; Database of Rice Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.d8j0eb; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://bioinformatics.oxfordjournals.org/cgi/content/abstract/22/10/1286
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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DRTF: a database of rice transcription factors
PubMed citations: 79.
79 articles citing: DRTF: a database of rice transcription factors
A de novo regulation design shows an effectiveness in altering plant secondary metabolism. PMID:35499047
Advances in Sensing, Response and Regulation Mechanism of Salt Tolerance in Rice. PMID:33668247
CamRegBase: a gene regulation database for the biofuel crop, Camelina sativa. PMID:33306801
Structural and functional insights into the LBD family involved in abiotic stress and flavonoid synthases in Camellia sinensis. PMID:31666570
Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis. PMID:31412781
Sheath blight of rice: a review and identification of priorities for future research. PMID:31346804
A web-based tool for the prediction of rice transcription factor function. PMID:31169887
Analysis of Rice Proteins with DLN Repressor Motif/S. PMID:30935059
RiceMetaSysB: a database of blast and bacterial blight responsive genes in rice and its utilization in identifying key blast-resistant WRKY genes. PMID:30753479
A compendium of transcription factor and Transcriptionally active protein coding gene families in cowpea (Vigna unguiculata L.). PMID:29166879
Analysis of Genes with Alternatively Spliced Transcripts in the Leaf, Root, Panicle and Seed of Rice Using a Long Oligomer Microarray and RNA-Seq. PMID:29047256
The Phosphoproteomic Response of Rice Seedlings to Cadmium Stress. PMID:28953215
Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis. PMID:28922793
Isoform Sequencing Provides a More Comprehensive View of the Panax ginseng Transcriptome. PMID:28914759
PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants. PMID:27924042
Identification of Nitrogen Use Efficiency Genes in Barley: Searching for QTLs Controlling Complex Physiological Traits. PMID:27818673
Transcription factors involved in drought tolerance and their possible role in developing drought tolerant cultivars with emphasis on wheat (Triticum aestivum L.). PMID:27738714
A CONSTANS-like transcriptional activator, OsCOL13, functions as a negative regulator of flowering downstream of OsphyB and upstream of Ehd1 in rice. PMID:27405463
Information Commons for Rice (IC4R). PMID:26519466
Functions of OsDof25 in regulation of OsC4PPDK. PMID:26337938
A comprehensive quantitative phosphoproteome analysis of rice in response to bacterial blight. PMID:26112675
Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice. PMID:26035591
REGULATOR: a database of metazoan transcription factors and maternal factors for developmental studies. PMID:25880930
Upstream regulatory architecture of rice genes: summarizing the baseline towards genus-wide comparative analysis of regulatory networks and allele mining. PMID:25844119
Physiological, anatomical and transcriptional alterations in a rice mutant leading to enhanced water stress tolerance. PMID:25818072
Genome-wide characterization of developmental stage- and tissue-specific transcription factors in wheat. PMID:25766308
Coordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress. PMID:25358745
Genome wide in silico characterization of Dof gene families of pigeonpea (Cajanus cajan (L) Millsp.). PMID:25344821
A strategy for genome-wide identification of gene based polymorphisms in rice reveals non-synonymous variation and functional genotypic markers. PMID:25237817
OsSLI1, a homeodomain containing transcription activator, involves abscisic acid related stress response in rice (Oryza sativa L.). PMID:25089296
Genomic profiling of rice roots with short- and long-term chromium stress. PMID:25056418
Analyses of hypomethylated oil palm gene space. PMID:24497974
PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors. PMID:24174544
Rice DB: an Oryza Information Portal linking annotation, subcellular location, function, expression, regulation, and evolutionary information for rice and Arabidopsis. PMID:24147765
Seed shattering in a wild sorghum is conferred by a locus unrelated to domestication. PMID:24019506
Automated conserved non-coding sequence (CNS) discovery reveals differences in gene content and promoter evolution among grasses. PMID:23874343
Autotoxicity mechanism of Oryza sativa: transcriptome response in rice roots exposed to ferulic acid. PMID:23705659
RiceSRTFDB: a database of rice transcription factors containing comprehensive expression, cis-regulatory element and mutant information to facilitate gene function analysis. PMID:23660286
Comparative analyses of nuclear proteome: extending its function. PMID:23637696
Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids. PMID:23410187
Genome-wide identification and analysis of the B3 superfamily of transcription factors in Brassicaceae and major crop plants. PMID:23377560
STIFDB2: an updated version of plant stress-responsive transcription factor database with additional stress signals, stress-responsive transcription factor binding sites and stress-responsive genes in Arabidopsis and rice. PMID:23314754
TreeTFDB: an integrative database of the transcription factors from six economically important tree crops for functional predictions and comparative and functional genomics. PMID:23284086
The rice B-box zinc finger gene family: genomic identification, characterization, expression profiling and diurnal analysis. PMID:23118960
Transcriptomic changes and signalling pathways induced by arsenic stress in rice roots. PMID:22987115
Genome-wide gene expression profiling of introgressed indica rice alleles associated with seedling cold tolerance improvement in a japonica rice background. PMID:22953761
AP2/ERF Transcription Factor in Rice: Genome-Wide Canvas and Syntenic Relationships between Monocots and Eudicots. PMID:22807623
Genome-wide analysis of the complex transcriptional networks of rice developing seeds. PMID:22363552
Identification of transcriptome profiles and signaling pathways for the allelochemical juglone in rice roots. PMID:22065257
In silico analysis of transcription factor repertoires and prediction of stress-responsive transcription factors from six major gramineae plants. PMID:21729923
Global profiling of rice and poplar transcriptomes highlights key conserved circadian-controlled pathways and cis-regulatory modules. PMID:21694767
Genome-wide temporal-spatial gene expression profiling of drought responsiveness in rice. PMID:21406116
Common and distinct organ and stress responsive transcriptomic patterns in Oryza sativa and Arabidopsis thaliana. PMID:21106056
PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database. PMID:21097470
Global gene profiling of laser-captured pollen mother cells indicates molecular pathways and gene subfamilies involved in rice meiosis. PMID:20959420
Biomedical text summarization to support genetic database curation: using Semantic MEDLINE to create a secondary database of genetic information. PMID:20936065
Genome-wide phylogenetic comparative analysis of plant transcriptional regulation: a timeline of loss, gain, expansion, and correlation with complexity. PMID:20644220
An expression analysis of 57 transcription factors derived from ESTs of developing seeds in Maize (Zea mays). PMID:20336461
wDBTF: an integrated database resource for studying wheat transcription factor families. PMID:20298594
Genomics and bioinformatics resources for crop improvement. PMID:20208064
TobEA: an atlas of tobacco gene expression from seed to senescence. PMID:20187945
Systematic analysis of GT factor family of rice reveals a novel subfamily involved in stress responses. PMID:20039179
Genome-wide identification and evolutionary analysis of the animal specific ETS transcription factor family. PMID:20011068
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. PMID:19936069
In silico analysis of transcription factor repertoire and prediction of stress responsive transcription factors in soybean. PMID:19884168
Comparative analyses of plant transcription factor databases. PMID:19721806
Physiological and transcriptome analysis of iron and phosphorus interaction in rice seedlings. PMID:19605549
Defining core metabolic and transcriptomic responses to oxygen availability in rice embryos and young seedlings. PMID:19571305
Mapping metabolic and transcript temporal switches during germination in rice highlights specific transcription factors and the role of RNA instability in the germination process. PMID:19074628
Bioinformatics in China: a personal perspective. PMID:18437216
Phylogenomics of plant genomes: a methodology for genome-wide searches for orthologs in plants. PMID:18426584
Tobacco transcription factors: novel insights into transcriptional regulation in the Solanaceae. PMID:18337489
Sequencing and analysis of the gene-rich space of cowpea. PMID:18304330
TOBFAC: the database of tobacco transcription factors. PMID:18221524
GreenPhylDB: a database for plant comparative genomics. PMID:17986457
PlantTFDB: a comprehensive plant transcription factor database. PMID:17933783
A quantitative RT-PCR platform for high-throughput expression profiling of 2500 rice transcription factors. PMID:17559651
PlanTAPDB, a phylogeny-based resource of plant transcription-associated proteins. PMID:17337525
PlnTFDB: an integrative plant transcription factor database. PMID:17286856 - http://bioinformatics.oxfordjournals.org/cgi/content/abstract/22/10/1286
Tags:
Tags
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biological regulation
metasource: Fairsharing.org
version: FAIRsharing.org: DRTF; Database of Rice Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.d8j0eb; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
curated information
metasource: Fairsharing.org
version: FAIRsharing.org: DRTF; Database of Rice Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.d8j0eb; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
deoxyribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: DRTF; Database of Rice Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.d8j0eb; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: DRTF; Database of Rice Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.d8j0eb; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
life cycle
metasource: Fairsharing.org
version: FAIRsharing.org: DRTF; Database of Rice Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.d8j0eb; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
messenger rna
metasource: Fairsharing.org
version: FAIRsharing.org: DRTF; Database of Rice Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.d8j0eb; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
transcript
metasource: Fairsharing.org
version: FAIRsharing.org: DRTF; Database of Rice Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.d8j0eb; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
transcription factor
metasource: Fairsharing.org
version: FAIRsharing.org: DRTF; Database of Rice Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.d8j0eb; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
rice
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
biological regulation
metasource: Fairsharing.orgversion: FAIRsharing.org: DRTF; Database of Rice Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.d8j0eb; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
curated information
metasource: Fairsharing.orgversion: FAIRsharing.org: DRTF; Database of Rice Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.d8j0eb; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
deoxyribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: DRTF; Database of Rice Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.d8j0eb; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: DRTF; Database of Rice Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.d8j0eb; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
life cycle
metasource: Fairsharing.orgversion: FAIRsharing.org: DRTF; Database of Rice Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.d8j0eb; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
messenger rna
metasource: Fairsharing.orgversion: FAIRsharing.org: DRTF; Database of Rice Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.d8j0eb; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
transcript
metasource: Fairsharing.orgversion: FAIRsharing.org: DRTF; Database of Rice Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.d8j0eb; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
transcription factor
metasource: Fairsharing.orgversion: FAIRsharing.org: DRTF; Database of Rice Transcription Factors; DOI: https://doi.org/10.25504/FAIRsharing.d8j0eb; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
plant databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
rice
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
biological regulation dna gene expression life cycle messenger rna transcript transcription plant rice
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