Tag: invertebrate genome

WormBase is an international consortium of biologists and computer scientists dedicated to providing the research community with accurate, current, accessible information concerning the genetics, genomics and biology of C. elegans and related nematod ...

VectorBase is a web-accessible data repository for information about invertebrate vectors of human pathogens. VectorBase annotates and maintains vector genomes (as well as a number of non-vector genomes for comparative analysis) providing an integrat ...

DRSC Functional Genomics Resources (DRSC-FGR) began as the Drosophila RNAi Screening Center (DRSC), founded by Prof. Norbert Perrimon in 2003, and the Transgenic RNAi Project (TRiP), founded by Prof. Perrimon in 2008. DRSC-FGR has been previously kno ...

FlyAtlas 2 is the RNA-Seq successor to the original FlyAtlas (which was based on microarray analysis). Specifically, FlyAtlas 2 now provides access to: transcript information, sex-specific data for adult somatic tissues, and micro-RNA genes. FlyAtlas ...

FlyMine is an integrated database of genomic, expression and protein data for Drosophila, Anopheles and C. elegans. Its main focus is genomic and proteomics data for Drosophila and other insects. It provides access to integrated data at a number of d ...

TriTrypDB is one of the databases that can be accessed through the VEuPathDB portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these ...

The i5k Workspace@NAL has two main goals. First, it aims to help the i5k ‘data producers’, in particular ‘orphaned’ groups without the technical or financial means for genome hosting, at the interface of sequence retrieval and analysis. Specifically, ...

REDfly is a curated collection of known Drosophila transcriptional cis-regulatory modules (CRMs) and transcription factor binding sites (TFBSs). REDfly seeks to include all experimentally verified fly regulatory elements along with their DNA sequence ...

The Hymenoptera Genome Database (HGD) is a genome informatics resource that supports the research of insects of the order Hymenoptera (e.g. bees, wasps, ants). HGD is divided into three main divisions: BeeBase, which hosts bee genomes and the Bee Pes ...

PlanMine is an integrated web resource of data & tools to mine Planarian biology.

Sequence, structure and activity of protein toxins from spider venom

Genome database of the beetle Tribolium castaneum

The Aphid Genome Database's aim is to improve the current pea aphid genome assembly and annotation, and to provide new aphid genome sequences as well as tools for analysis of these genomes.

wFleaBase includes data from all species of the genus, yet the primary species are Daphnia pulex and Daphnia magna, because of the broad set of genomic tools that have already been developed for these animals.

StellaBase is the Nematostella vectensis genomics database.

Predicted proteins from C. elegans

SpodoBase is an integrated database for the genomics of the Lepidoptera Spodoptera frugiperda. It is a publicly available structured database with insect pest sequences which will allow identification of a number of genes and comprehensive cloning of ...

FlyTF (v2) is a manually curated catalogue of Drosophila site-specific transcription factors (TFs). It integrates proteins identified as DNA-binding TFs by computational prediction based on structural domain assignments, and experimentally verified T ...

RNAiDB provides access to results from RNAi interference studies in C. elegans , including images, movies, phenotypes, and graphical maps.

Structural proteins of Arthropod cuticle

CIPRO is an integrated protein that has been developed to provide widespread information of the proteins expressed in the ascidian Ciona intestinalis, especially for the researcher who wants to get advance and useful information for starting biologic ...

The D. melanogaster and eight other eukaryote model genomes, and gene predictions from several groups. Summaries of essential genome statistics include sizes, genes found and predicted, homology among genomes, phylogenetic trees of species, and compa ...

Wiki for coordinating nematode sequencing projects

InSatDb, unlike many other microsatellite databases that cater largely to the needs of microsatellites as markers, presents an interactive interface to query information regarding microsatellite characteristics of five fully sequenced insect genomes ...

Drosophila Polymorphism Database, is a secondary database designed to provide a collection of all the existing polymorphic sequences in the Drosophila genus. It allows, for the first time, the search for any polymorphic set according to different par ...

Whole-genome sequence data, variant calls, and annotations of natural genetic variation in C. elegans species.

Drosophila transgenic lines created using an intron protein trap strategy

Phenotypes of a large scale RNAi screen in the red flour beetle Tribolium castaneum

Genome annotation database of Drosophila

Insect genomes and transcriptomes

Nematode sequence and functional data database

The Schmidtea mediterranea genome database

Natural variation data in Caenorhabditis spp.

ESTs of the earthworm Lumbricus rubellus

Database of the Drosophila nervous system

SNP data for Drosophila melanogaster

FlyAtlas: the Drosophila gene expression atlas

A database on the nematode Pristionchus pacificus

Sex bias in insect gene expression database

Drosophila genes and their roles in development

3'UTRs and their functional elements in C. elegans

Parasitic nematode sequencing project

Developmental phenomics, cell-specific gene functions and cell differentiation in C. elegans

INVHOGEN (INVertebrate HOmologous GENes) is a database combining the available invertebrate protein genes from UniProt (consisting of Swiss-Prot, TrEMBL) into gene families. For each family INVHOGEN provides a multiple protein alignment, a maximum li ...

The monarch butterfly (Danaus plexippus) is emerging as a model organism to study the mechanisms of circadian clocks and animal navigation, and the genetic underpinnings of long-distance migration (1). MonarchBase was developed as a public database f ...

FlyEx is a spatiotemporal atlas of segmentation gene expression. The important feature that sets FlyEx apart from other spatiotemporal atlases is the availability of highly accurate quantitative gene expression data. FlyEx supports operations on ima ...

Pristionchus pacificus is a nematode (roundworm) in the family Diplogastridae. Its last common ancestor with Caenorhabditis elegans lived 200-300 Mio years ago. Pristionchus pacificus was described as a novel species in 1996 and fulfills many technic ...

SchistoDB (http://SchistoDB.net) is a genomic database for the parasitic organism Schistosoma mansoni, one of the major causative agents of schistosomiasis worldwide (1,2). It currently incorporates sequences and annotation for S. mansoni in a single ...

MitoDrome is a database born with the aim of annotating D. melanogaster nuclear genes encoding mitochondrial proteins and contributing to the functional characterisation of these genes to support studies on human diseases related to mitochondrial dys ...

WormBook (http://www.wormbook.org) is an open-access, online collection of original, peer-reviewed chapters on the biology of C. elegans and related nematodes. It contains over 100 chapters, covering nearly every aspect of C. elegans research, from c ...

Comparasite is a database for comparative studies of transcriptomes of parasites, which are defined by the full-length cDNAs from various apicomplexan parasites. It integrates seven individual databases consisting of numerous full-length cDNA clones ...

SilkSatDb is a comprehensive relational database of silkworm microsatellites that gives description of abundance, frequency and distribution of different classes of microsatellites in autosomes, Z-chromosome and expressed sequence tags (ESTs). Alleli ...

Worm Developmental Dynamics Database (WDDD) stores a collection of quantitative information about cell division dynamics in early Caenorhabditis elegans embryos with single genes silenced by RNA-mediated interference (RNAi). The information was obtai ...

Protein kinases (PKs), one of the largest and functionally divergent gene families, mediate most of the signal transduction pathways in eukaryotic cells by the modification of substrate activity. They function as key regulators of a number of biologi ...