PlanMine
PlanMine is an integrated web resource of data & tools to mine Planarian biology.
Description
More detailed information about this field from each metasource.
PlanMine is an integrated web resource of data & tools to mine Planarian biology.
metasource: Fairsharing.orgversion: FAIRsharing.org: PlanMine; PlanMine; DOI: https://doi.org/10.25504/FAIRsharing.84Ltoq; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
Platform for archiving and mining planarian biodiversity
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
An integrated web resource of data & tools to mine Planarian biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:21.860396
Webpage:
http://planmine.mpi-cbg.de/Webpage
More detailed information about this field from each metasource.
http://planmine.mpi-cbg.de/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
http://planmine.mpi-cbg.de/planmine
metasource: Fairsharing.orgversion: FAIRsharing.org: PlanMine; PlanMine; DOI: https://doi.org/10.25504/FAIRsharing.84Ltoq; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:21.860396
Licence:
Name: LGPL-2.1Licence name
More detailed information about this field from each metasource.
Publications:
Publications
More detailed information about this field from each metasource.
PlanMine 3.0-improvements to a mineable resource of flatworm biology and biodiversity
PMID: 30496475
metasource: Fairsharing.org
version: FAIRsharing.org: PlanMine; PlanMine; DOI: https://doi.org/10.25504/FAIRsharing.84Ltoq; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
http://dx.doi.org/10.1093/nar/gkv1148
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
http://dx.doi.org/10.1093/bioinformatics/bts577
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:21.860396
Publications
More detailed information about this field from each metasource.
PlanMine 3.0-improvements to a mineable resource of flatworm biology and biodiversity
PMID: 30496475
metasource: Fairsharing.org
version: FAIRsharing.org: PlanMine; PlanMine; DOI: https://doi.org/10.25504/FAIRsharing.84Ltoq; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
http://dx.doi.org/10.1093/nar/gkv1148
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
http://dx.doi.org/10.1093/bioinformatics/bts577
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:21.860396
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PlanMine 3.0-improvements to a mineable resource of flatworm biology and biodiversity
PubMed citations: 35.
35 articles citing: PlanMine 3.0-improvements to a mineable resource of flatworm biology and biodiversity
A Krüppel-like factor is required for development and regeneration of germline and yolk cells from somatic stem cells in planarians. PMID:35839223
HumanMine: advanced data searching, analysis and cross-species comparison. PMID:35820040
Systematic identification of cell-fate regulatory programs using a single-cell atlas of mouse development. PMID:35817981
Somatic regulation of female germ cell regeneration and development in planarians. PMID:35294875
RNAi Screen of RING/U-Box Domain Ubiquitin Ligases Identifies Critical Regulators of Tissue Regeneration in Planarians. PMID:35127720
Functional analysis of ADARs in planarians supports a bilaterian ancestral role in suppressing double-stranded RNA-response. PMID:35041722
Regeneration of Planarian Auricles and Reestablishment of Chemotactic Ability. PMID:34901022
Analysis of Morphogenesis and Flagellar Assembly During Spermatogenesis in Planarian Flatworms. PMID:34542855
Set1 Targets Genes with Essential Identity and Tumor-Suppressing Functions in Planarian Stem Cells. PMID:34440355
Identification of novel yolk ferritins unique to planarians: planarians supply aluminum rather than iron to vitellaria in egg capsules. PMID:34319433
Planarian Anatomy Ontology: a resource to connect data within and across experimental platforms. PMID:34318308
Regeneration in starved planarians depends on TRiC/CCT subunits modulating the unfolded protein response. PMID:34190393
Heterotrimeric Kinesin II is required for flagellar assembly and elongation of nuclear morphology during spermiogenesis in Schmidtea mediterranea. PMID:34090925
A Spatiotemporal Characterisation of Redox Molecules in Planarians, with a Focus on the Role of Glutathione during Regeneration. PMID:34064618
Ongoing repair of migration-coupled DNA damage allows planarian adult stem cells to reach wound sites. PMID:33890575
Planarian stem cells specify fate yet retain potency during the cell cycle. PMID:33882291
Collagen IV differentially regulates planarian stem cell potency and lineage progression. PMID:33859045
Analysis of Fox genes in Schmidtea mediterranea reveals new families and a conserved role of Smed-foxO in controlling cell death. PMID:33536473
Comprehensive annotation and characterization of planarian tRNA and tRNA-derived fragments (tRFs). PMID:33446492
Tnfaip2/exoc3-driven lipid metabolism is essential for stem cell differentiation and organ homeostasis. PMID:33300287
TRAF-like Proteins Regulate Cellular Survival in the Planarian Schmidtea mediterranea. PMID:33134895
Large-scale RNAi screening uncovers therapeutic targets in the parasite Schistosoma mansoni. PMID:32973031
A Novel Taxon of Monosegmented Double-Stranded RNA Viruses Endemic to Triclad Flatworms. PMID:32907972
Dugesia japonica is the best suited of three planarian species for high-throughput toxicology screening. PMID:32298908
Sirtuin-1 regulates organismal growth by altering feeding behavior and intestinal morphology in planarians. PMID:32265271
Planarian EGF repeat-containing genes megf6 and hemicentin are required to restrict the stem cell compartment. PMID:32078629
Cilia Loss and Dynein Assembly Defects in Planaria Lacking an Outer Dynein Arm-Docking Complex Subunit. PMID:32068369
Poly(ADP-Ribose) Polymerase-3 Regulates Regeneration in Planarians. PMID:32013251
Pharmacological or genetic targeting of Transient Receptor Potential (TRP) channels can disrupt the planarian escape response. PMID:31805147
Efficient depletion of ribosomal RNA for RNA sequencing in planarians. PMID:31783730
Region-specific regulation of stem cell-driven regeneration in tapeworms. PMID:31549962
Outstanding intraindividual genetic diversity in fissiparous planarians (Dugesia, Platyhelminthes) with facultative sex. PMID:31221097
Live imaging of intracellular pH in planarians using the ratiometric fluorescent dye SNARF-5F-AM. PMID:31206034
Muscle functions as a connective tissue and source of extracellular matrix in planarians. PMID:30962434
The 26th annual Nucleic Acids Research database issue and Molecular Biology Database Collection. PMID:30626175 - http://dx.doi.org/10.1093/nar/gkv1148
- http://dx.doi.org/10.1093/bioinformatics/bts577
Tags:
Tags
More detailed information about this field from each metasource.
contig
metasource: Fairsharing.org
version: FAIRsharing.org: PlanMine; PlanMine; DOI: https://doi.org/10.25504/FAIRsharing.84Ltoq; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
gene
metasource: Fairsharing.org
version: FAIRsharing.org: PlanMine; PlanMine; DOI: https://doi.org/10.25504/FAIRsharing.84Ltoq; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
transcript
metasource: Fairsharing.org
version: FAIRsharing.org: PlanMine; PlanMine; DOI: https://doi.org/10.25504/FAIRsharing.84Ltoq; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
invertebrate genome databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
data management
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:21.860396
genomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:21.860396
proteomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:21.860396
Tags
More detailed information about this field from each metasource.
contig
metasource: Fairsharing.orgversion: FAIRsharing.org: PlanMine; PlanMine; DOI: https://doi.org/10.25504/FAIRsharing.84Ltoq; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
gene
metasource: Fairsharing.orgversion: FAIRsharing.org: PlanMine; PlanMine; DOI: https://doi.org/10.25504/FAIRsharing.84Ltoq; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
transcript
metasource: Fairsharing.orgversion: FAIRsharing.org: PlanMine; PlanMine; DOI: https://doi.org/10.25504/FAIRsharing.84Ltoq; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
invertebrate genome databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
data management
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:21.860396
genomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:21.860396
proteomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:21.860396
contig gene transcript genomics invertebrate genome data management genomics proteomics
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