i5k Workspace@NAL
The i5k Workspace@NAL has two main goals. First, it aims to help the i5k ‘data producers’, in particular ‘orphaned’ groups without the technical or financial means for genome hosting, at the interface of sequence retrieval and analysis. Specifically, it aims to help them access, visualize, curate and disseminate data once it has been received from the sequencing center. Second, it aims to provide a unified framework for ‘data consumers’ to retrieve relevant genomic information from data providers.
Description
More detailed information about this field from each metasource.
The i5k Workspace@NAL has two main goals. First, it aims to help the i5k ‘data producers’, in particular ‘orphaned’ groups without the technical or financial means for genome hosting, at the interface of sequence retrieval and analysis. Specifically, it aims to help them access, visualize, curate and disseminate data once it has been received from the sequencing center. Second, it aims to provide a unified framework for ‘data consumers’ to retrieve relevant genomic information from data providers.
metasource: Fairsharing.orgversion: FAIRsharing.org: i5k Workspace@NAL; i5k Workspace@NAL; DOI: https://doi.org/10.25504/FAIRsharing.1v9vsL; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Arthropod genome projects
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
https://i5k.nal.usda.gov/Webpage
More detailed information about this field from each metasource.
https://i5k.nal.usda.gov/
metasource: Fairsharing.orgversion: FAIRsharing.org: i5k Workspace@NAL; i5k Workspace@NAL; DOI: https://doi.org/10.25504/FAIRsharing.1v9vsL; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://i5k.nal.usda.gov/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Licence:
Name: Fort Lauderdale PrinciplesLicence name
More detailed information about this field from each metasource.
Fort Lauderdale Principles
metasource: Fairsharing.orgversion: FAIRsharing.org: i5k Workspace@NAL; i5k Workspace@NAL; DOI: https://doi.org/10.25504/FAIRsharing.1v9vsL; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Licence URL
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http://www.faang.org/data-share-principle
metasource: Fairsharing.orgversion: FAIRsharing.org: i5k Workspace@NAL; i5k Workspace@NAL; DOI: https://doi.org/10.25504/FAIRsharing.1v9vsL; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
The i5k Workspace@NAL--enabling genomic data access, visualization and curation of arthropod genomes
PMID: 25332403
metasource: Fairsharing.org
version: FAIRsharing.org: i5k Workspace@NAL; i5k Workspace@NAL; DOI: https://doi.org/10.25504/FAIRsharing.1v9vsL; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://dx.doi.org/10.1093/nar/gku983
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
The i5k Workspace@NAL--enabling genomic data access, visualization and curation of arthropod genomes
PMID: 25332403
metasource: Fairsharing.org
version: FAIRsharing.org: i5k Workspace@NAL; i5k Workspace@NAL; DOI: https://doi.org/10.25504/FAIRsharing.1v9vsL; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://dx.doi.org/10.1093/nar/gku983
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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The i5k Workspace@NAL--enabling genomic data access, visualization and curation of arthropod genomes
PubMed citations: 73.
73 articles citing: The i5k Workspace@NAL--enabling genomic data access, visualization and curation of arthropod genomes
Lessons learned about the biology and genomics of Diaphorina citri infection with "Candidatus Liberibacter asiaticus" by integrating new and archived organ-specific transcriptome data. PMID:35482489
Phylogenetic analysis of forkhead transcription factors in the Panarthropoda. PMID:35230523
The evolution of insect visual opsin genes with specific consideration of the influence of ocelli and life history traits. PMID:34996358
Phylogenomic and mitogenomic data can accelerate inventorying of tropical beetles during the current biodiversity crisis. PMID:34927586
Comparative genomics suggests local adaptations in the invasive small hive beetle. PMID:34824789
InsectBase 2.0: a comprehensive gene resource for insects. PMID:34792158
A Genomic Survey of Mayetiola destructor Mobilome Provides New Insights into the Evolutionary History of Transposable Elements in the Cecidomyiid Midges. PMID:34634072
Workflows for Rapid Functional Annotation of Diverse Arthropod Genomes. PMID:34442314
Next-Generation Sequencing and Its Impacts on Entomological Research in Ecology and Evolution. PMID:34374956
The USDA-ARS Ag100Pest Initiative: High-Quality Genome Assemblies for Agricultural Pest Arthropod Research. PMID:34357286
Evidence for UV-green dichromacy in the basal hymenopteran Sirex noctilio (Siricidae). PMID:34341410
Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databases. PMID:34251419
Considerations for mosquito microbiome research from the Mosquito Microbiome Consortium. PMID:33522965
Anosmic flies: what Orco silencing does to olive fruit flies. PMID:33339492
Jekyll or Hyde? The genome (and more) of Nesidiocoris tenuis, a zoophytophagous predatory bug that is both a biological control agent and a pest. PMID:33305885
Genome-enabled insights into the biology of thrips as crop pests. PMID:33070780
Hybrid Genome Assembly and Evidence-Based Annotation of the Egg Parasitoid and Biological Control Agent Trichogramma brassicae. PMID:32792343
Tripal and Galaxy: supporting reproducible scientific workflows for community biological databases. PMID:32621602
Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera. PMID:32442304
Phylogenetic and sequence analyses of insect transferrins suggest that only transferrin 1 has a role in iron homeostasis. PMID:32237057
De novo assembly of the olive fruit fly (Bactrocera oleae) genome with linked-reads and long-read technologies minimizes gaps and provides exceptional Y chromosome assembly. PMID:32228451
Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest. PMID:32171258
Gene content evolution in the arthropods. PMID:31969194
Tripal EUtils: a Tripal module to increase exchange and reuse of genome assembly metadata. PMID:31960040
Extension modules for storage, visualization and querying of genomic, genetic and breeding data in Tripal databases. PMID:31725859
Tripal MapViewer: A tool for interactive visualization and comparison of genetic maps. PMID:31688940
A high-quality genome assembly from a single, field-collected spotted lanternfly (Lycorma delicatula) using the PacBio Sequel II system. PMID:31609423
Genome of the Parasitoid Wasp Diachasma alloeum, an Emerging Model for Ecological Speciation and Transitions to Asexual Reproduction. PMID:31553440
Lessons from One Fastidious Bacterium to Another: What Can We Learn about Liberibacter Species from Xylella fastidiosa. PMID:31527458
Comparative proteomics of stenotopic caddisfly Crunoecia irrorata identifies acclimation strategies to warming. PMID:31478292
Rhodnius prolixus: Identification of missing components of the IMD immune signaling pathway and functional characterization of its role in eliminating bacteria. PMID:30943246
A quick guide for student-driven community genome annotation. PMID:30943207
Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome. PMID:30935422
Relative abundance and molecular evolution of Lake Sinai Virus (Sinaivirus) clades. PMID:30923646
Comparative analysis of seven types of superoxide dismutases for their ability to respond to oxidative stress in Bombyx mori. PMID:30778096
Apollo: Democratizing genome annotation. PMID:30726205
Genomic Signals of Adaptation towards Mutualism and Sociality in Two Ambrosia Beetle Complexes. PMID:30583535
The achaete-scute complex contains a single gene that controls bristle development in the semi-aquatic bugs. PMID:30487316
The genome of the water strider Gerris buenoi reveals expansions of gene repertoires associated with adaptations to life on the water. PMID:30463532
Genome sequences identify three families of Coleoptera as morphologically derived click beetles (Elateridae). PMID:30459416
Firefly genomes illuminate parallel origins of bioluminescence in beetles. PMID:30324905
Parasitoid Jewel Wasp Mounts Multipronged Neurochemical Attack to Hijack a Host Brain. PMID:30293061
WaspBase: a genomic resource for the interactions among parasitic wasps, insect hosts and plants. PMID:30219838
The origin of the odorant receptor gene family in insects. PMID:30063003
Genome sequencing of Rhinorhipus Lawrence exposes an early branch of the Coleoptera. PMID:29743928
The Toxicogenome of Hyalella azteca: A Model for Sediment Ecotoxicology and Evolutionary Toxicology. PMID:29634279
Enormous expansion of the chemosensory gene repertoire in the omnivorous German cockroach Blattella germanica. PMID:29566459
Genetic Basis of Body Color and Spotting Pattern in Redheaded Pine Sawfly Larvae (Neodiprion lecontei). PMID:29496749
A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae). PMID:29386578
Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community. PMID:29220441
Insights into the molecular evolution of peptidase inhibitors in arthropods. PMID:29108008
Noncanonical GA and GG 5' Intron Donor Splice Sites Are Common in the Copepod Eurytemora affinis. PMID:29079681
Perspectives on Gene Regulatory Network Evolution. PMID:28528721
A Chromosome-Scale Assembly of the Bactrocera cucurbitae Genome Provides Insight to the Genetic Basis of white pupae. PMID:28450369
Asymmetric interactions between doublesex and tissue- and sex-specific target genes mediate sexual dimorphism in beetles. PMID:28239147
Identification of functional enolase genes of the silkworm Bombyx mori from public databases with a combination of dry and wet bench processes. PMID:28086791
blend4php: a PHP API for galaxy. PMID:28077564
Asian Citrus Psyllid RNAi Pathway - RNAi evidence. PMID:27901078
Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface. PMID:27832824
Central neural alterations predominate in an insect model of nociceptive sensitization. PMID:27650422
Vector-Borne Bacterial Plant Pathogens: Interactions with Hemipteran Insects and Plants. PMID:27555855
Formation of the germ-disc in spider embryos by a condensation-like mechanism. PMID:27525029
A robust (re-)annotation approach to generate unbiased mapping references for RNA-seq-based analyses of differential expression across closely related species. PMID:27220689
JBrowse: a dynamic web platform for genome visualization and analysis. PMID:27072794
The life cycle of a genome project: perspectives and guidelines inspired by insect genome projects. PMID:27006757
Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado. PMID:26989146
InsectBase: a resource for insect genomes and transcriptomes. PMID:26578584
Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine. PMID:26578564
Dosage Compensation of X-Linked Muller Element F Genes but Not X-Linked Transgenes in the Australian Sheep Blowfly. PMID:26506426
Genome engineering: Drosophila melanogaster and beyond. PMID:26447401
Origin and evolution of the enhancer of split complex. PMID:26384649
The power and promise of applying genomics to honey bee health. PMID:26273565
Transcriptome of the egg parasitoid Fopius arisanus: an important biocontrol tool for Tephritid fruit fly suppression. PMID:26244090 - http://dx.doi.org/10.1093/nar/gku983
Tags:
Tags
More detailed information about this field from each metasource.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
invertebrate genome databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
invertebrate genome databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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