mz peptide and protein Identification Markup Language
Names
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mz peptide and protein Identification Markup Language
metasource: Fairsharing.org
version: FAIRsharing.org: mzIdentML; mz peptide and protein Identification Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.11889; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
mzIdentML
metasource: Fairsharing.org
version: FAIRsharing.org: mzIdentML; mz peptide and protein Identification Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.11889; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
Names
More detailed information about this field from each metasource.
mz peptide and protein Identification Markup Language
metasource: Fairsharing.orgversion: FAIRsharing.org: mzIdentML; mz peptide and protein Identification Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.11889; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
mzIdentML
metasource: Fairsharing.orgversion: FAIRsharing.org: mzIdentML; mz peptide and protein Identification Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.11889; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
Names
More detailed information about this field from each metasource.
mz peptide and protein Identification Markup Language
metasource: Fairsharing.orgversion: FAIRsharing.org: mzIdentML; mz peptide and protein Identification Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.11889; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
mzIdentML
metasource: Fairsharing.orgversion: FAIRsharing.org: mzIdentML; mz peptide and protein Identification Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.11889; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
A large number of different proteomics search engines are available that produce output in a variety of different formats. It is intended that mzIdentML will provide a common format for the export of identification results from any search engine. The format was originally developed under the name AnalysisXML as a format for several types of computational analyses performed over mass spectra in the proteomics context. It has been decided to split development into two formats: mzIdentML for peptide and protein identification, and mzQuantML, covering quantitative proteomic data derived from MS.
Description
More detailed information about this field from each metasource.
A large number of different proteomics search engines are available that produce output in a variety of different formats. It is intended that mzIdentML will provide a common format for the export of identification results from any search engine. The format was originally developed under the name AnalysisXML as a format for several types of computational analyses performed over mass spectra in the proteomics context. It has been decided to split development into two formats: mzIdentML for peptide and protein identification, and mzQuantML, covering quantitative proteomic data derived from MS.
metasource: Fairsharing.orgversion: FAIRsharing.org: mzIdentML; mz peptide and protein Identification Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.11889; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
Webpage:
http://www.psidev.info/mzidentmlWebpage
More detailed information about this field from each metasource.
http://www.psidev.info/mzidentml
metasource: Fairsharing.orgversion: FAIRsharing.org: mzIdentML; mz peptide and protein Identification Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.11889; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
mzIdentML: an open community-built standard format for the results of proteomics spectrum identification algorithms
PMID: 21063947
metasource: Fairsharing.org
version: FAIRsharing.org: mzIdentML; mz peptide and protein Identification Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.11889; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
Publications
More detailed information about this field from each metasource.
mzIdentML: an open community-built standard format for the results of proteomics spectrum identification algorithms
PMID: 21063947
metasource: Fairsharing.org
version: FAIRsharing.org: mzIdentML; mz peptide and protein Identification Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.11889; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
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mzIdentML: an open community-built standard format for the results of proteomics spectrum identification algorithms
PubMed citations: 16.
16 articles citing: mzIdentML: an open community-built standard format for the results of proteomics spectrum identification algorithms
Data-independent acquisition mass spectrometry for site-specific glycoproteomics characterization of SARS-CoV-2 spike protein. PMID:34635934
A Perspective on the Confident Comparison of Glycoprotein Site-Specific Glycosylation in Sample Cohorts. PMID:31833756
Review of software tools for design and analysis of large scale MRM proteomic datasets. PMID:23702368
Proteomics and the analysis of proteomic data: 2013 overview of current protein-profiling technologies. PMID:23504934
Open source libraries and frameworks for mass spectrometry based proteomics: a developer's perspective. PMID:23467006
Controlled vocabularies and ontologies in proteomics: overview, principles and practice. PMID:23429179
Pyteomics--a Python framework for exploratory data analysis and rapid software prototyping in proteomics. PMID:23292976
The Units Ontology: a tool for integrating units of measurement in science. PMID:23060432
A cross-platform toolkit for mass spectrometry and proteomics. PMID:23051804
A mass spectrometry proteomics data management platform. PMID:22611296
jmzReader: A Java parser library to process and visualize multiple text and XML-based mass spectrometry data formats. PMID:22539430
PRIDE: quality control in a proteomics data repository. PMID:22434838
Modification site localization scoring: strategies and performance. PMID:22328712
PRIDE Inspector: a tool to visualize and validate MS proteomics data. PMID:22318026
Pepitome: evaluating improved spectral library search for identification complementarity and quality assessment. PMID:22217208
The ProteoRed MIAPE web toolkit: a user-friendly framework to connect and share proteomics standards. PMID:21983993
Tags:
Tags
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centrally registered identifier
metasource: Fairsharing.org
version: FAIRsharing.org: mzIdentML; mz peptide and protein Identification Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.11889; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
peptide identification
metasource: Fairsharing.org
version: FAIRsharing.org: mzIdentML; mz peptide and protein Identification Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.11889; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: mzIdentML; mz peptide and protein Identification Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.11889; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
protein identification
metasource: Fairsharing.org
version: FAIRsharing.org: mzIdentML; mz peptide and protein Identification Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.11889; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
Tags
More detailed information about this field from each metasource.
centrally registered identifier
metasource: Fairsharing.orgversion: FAIRsharing.org: mzIdentML; mz peptide and protein Identification Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.11889; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
peptide identification
metasource: Fairsharing.orgversion: FAIRsharing.org: mzIdentML; mz peptide and protein Identification Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.11889; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: mzIdentML; mz peptide and protein Identification Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.11889; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
protein identification
metasource: Fairsharing.orgversion: FAIRsharing.org: mzIdentML; mz peptide and protein Identification Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.11889; Last edited: Jan. 8, 2019, 1:37 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
centrally registered identifier peptide identification protein protein identification
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