Transition Markup Language
Names
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Transition Markup Language
metasource: Fairsharing.org
version: FAIRsharing.org: HUPO-PSI TraML; Transition Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.rz77m6; Last edited: March 19, 2021, 4:45 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
HUPO-PSI TraML
metasource: Fairsharing.org
version: FAIRsharing.org: HUPO-PSI TraML; Transition Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.rz77m6; Last edited: March 19, 2021, 4:45 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Names
More detailed information about this field from each metasource.
Transition Markup Language
metasource: Fairsharing.orgversion: FAIRsharing.org: HUPO-PSI TraML; Transition Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.rz77m6; Last edited: March 19, 2021, 4:45 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
HUPO-PSI TraML
metasource: Fairsharing.orgversion: FAIRsharing.org: HUPO-PSI TraML; Transition Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.rz77m6; Last edited: March 19, 2021, 4:45 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Names
More detailed information about this field from each metasource.
Transition Markup Language
metasource: Fairsharing.orgversion: FAIRsharing.org: HUPO-PSI TraML; Transition Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.rz77m6; Last edited: March 19, 2021, 4:45 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
HUPO-PSI TraML
metasource: Fairsharing.orgversion: FAIRsharing.org: HUPO-PSI TraML; Transition Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.rz77m6; Last edited: March 19, 2021, 4:45 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
The HUPO PSI Mass Spectrometry Standards Working Group (MSS WG) has developed a specification for a standardized format for the exchange and transmission of transition lists for selected reaction monitoring (SRM) experiments. This specification has now completed rigorous review with the PSI document process and is complete
Description
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The HUPO PSI Mass Spectrometry Standards Working Group (MSS WG) has developed a specification for a standardized format for the exchange and transmission of transition lists for selected reaction monitoring (SRM) experiments. This specification has now completed rigorous review with the PSI document process and is complete
metasource: Fairsharing.orgversion: FAIRsharing.org: HUPO-PSI TraML; Transition Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.rz77m6; Last edited: March 19, 2021, 4:45 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Webpage:
http://www.psidev.info/tramlWebpage
More detailed information about this field from each metasource.
http://www.psidev.info/traml
metasource: Fairsharing.orgversion: FAIRsharing.org: HUPO-PSI TraML; Transition Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.rz77m6; Last edited: March 19, 2021, 4:45 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
TraML--a standard format for exchange of selected reaction monitoring transition lists
PMID: 22159873
metasource: Fairsharing.org
version: FAIRsharing.org: HUPO-PSI TraML; Transition Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.rz77m6; Last edited: March 19, 2021, 4:45 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Publications
More detailed information about this field from each metasource.
TraML--a standard format for exchange of selected reaction monitoring transition lists
PMID: 22159873
metasource: Fairsharing.org
version: FAIRsharing.org: HUPO-PSI TraML; Transition Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.rz77m6; Last edited: March 19, 2021, 4:45 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
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TraML--a standard format for exchange of selected reaction monitoring transition lists
PubMed citations: 35.
35 articles citing: TraML--a standard format for exchange of selected reaction monitoring transition lists
Cerebrospinal fluid proteome maps detect pathogen-specific host response patterns in meningitis. PMID:33821792
patRoon: open source software platform for environmental mass spectrometry based non-target screening. PMID:33407901
Proteomics Standards Initiative Extended FASTA Format. PMID:31081335
Challenges and Opportunities for Biological Mass Spectrometry Core Facilities in the Developing World. PMID:29623005
Proteomics Standards Initiative: Fifteen Years of Progress and Future Work. PMID:28849660
A multicenter study benchmarks software tools for label-free proteome quantification. PMID:27701404
Exploring the potential of public proteomics data. PMID:26449181
Representation of selected-reaction monitoring data in the mzQuantML data standard. PMID:25884107
Development of data representation standards by the human proteome organization proteomics standards initiative. PMID:25726569
Building high-quality assay libraries for targeted analysis of SWATH MS data. PMID:25675208
Reproducible and consistent quantification of the Saccharomyces cerevisiae proteome by SWATH-mass spectrometry. PMID:25561506
Making proteomics data accessible and reusable: current state of proteomics databases and repositories. PMID:25158685
Using PeptideAtlas, SRMAtlas, and PASSEL: Comprehensive Resources for Discovery and Targeted Proteomics. PMID:24939129
qcML: an exchange format for quality control metrics from mass spectrometry experiments. PMID:24760958
jmzTab: a java interface to the mzTab data standard. PMID:24659499
The jmzQuantML programming interface and validator for the mzQuantML data standard. PMID:24453188
Differential expression of serum/plasma proteins in various infectious diseases: specific or nonspecific signatures. PMID:24293340
Review of software tools for design and analysis of large scale MRM proteomic datasets. PMID:23702368
The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics. PMID:23599424
A tutorial for software development in quantitative proteomics using PSI standard formats. PMID:23584085
Proteomics and the analysis of proteomic data: 2013 overview of current protein-profiling technologies. PMID:23504934
The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary. PMID:23482073
Open source libraries and frameworks for mass spectrometry based proteomics: a developer's perspective. PMID:23467006
Controlled vocabularies and ontologies in proteomics: overview, principles and practice. PMID:23429179
Quality assessment for clinical proteomics. PMID:23246537
In silico design of targeted SRM-based experiments. PMID:23176520
The Units Ontology: a tool for integrating units of measurement in science. PMID:23060432
Ten years of standardizing proteomic data: a report on the HUPO-PSI Spring Workshop: April 12-14th, 2012, San Diego, USA. PMID:22969026
File formats commonly used in mass spectrometry proteomics. PMID:22956731
MRMaid: The SRM Assay Design Tool for Arabidopsis and Other Species. PMID:22833751
A critical appraisal of techniques, software packages, and standards for quantitative proteomic analysis. PMID:22804616
Automated selected reaction monitoring software for accurate label-free protein quantification. PMID:22658081
PASSEL: the PeptideAtlas SRMexperiment library. PMID:22318887
jTraML: an open source Java API for TraML, the PSI standard for sharing SRM transitions. PMID:21967198
ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry. PMID:21414234
Tags:
Tags
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mass spectrometry assay
metasource: Fairsharing.org
version: FAIRsharing.org: HUPO-PSI TraML; Transition Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.rz77m6; Last edited: March 19, 2021, 4:45 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Tags
More detailed information about this field from each metasource.
mass spectrometry assay
metasource: Fairsharing.orgversion: FAIRsharing.org: HUPO-PSI TraML; Transition Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.rz77m6; Last edited: March 19, 2021, 4:45 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
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