mz Quantitative Markup Language
Names
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mz Quantitative Markup Language
metasource: Fairsharing.org
version: FAIRsharing.org: mzQuantML; mz Quantitative Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.fk6zhb; Last edited: Jan. 8, 2019, 1:30 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
mzQuantML
metasource: Fairsharing.org
version: FAIRsharing.org: mzQuantML; mz Quantitative Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.fk6zhb; Last edited: Jan. 8, 2019, 1:30 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Names
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mz Quantitative Markup Language
metasource: Fairsharing.orgversion: FAIRsharing.org: mzQuantML; mz Quantitative Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.fk6zhb; Last edited: Jan. 8, 2019, 1:30 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
mzQuantML
metasource: Fairsharing.orgversion: FAIRsharing.org: mzQuantML; mz Quantitative Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.fk6zhb; Last edited: Jan. 8, 2019, 1:30 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Names
More detailed information about this field from each metasource.
mz Quantitative Markup Language
metasource: Fairsharing.orgversion: FAIRsharing.org: mzQuantML; mz Quantitative Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.fk6zhb; Last edited: Jan. 8, 2019, 1:30 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
mzQuantML
metasource: Fairsharing.orgversion: FAIRsharing.org: mzQuantML; mz Quantitative Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.fk6zhb; Last edited: Jan. 8, 2019, 1:30 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
The mzQuantML standard format is intended to store the systematic description of workflows quantifying molecules (principally peptides and proteins) by mass spectrometry. A large number of different software packages are available that produce output in a variety of different formats. It is intended that mzQuantML will provide a common format for the export of identification results from any software package.
Description
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The mzQuantML standard format is intended to store the systematic description of workflows quantifying molecules (principally peptides and proteins) by mass spectrometry. A large number of different software packages are available that produce output in a variety of different formats. It is intended that mzQuantML will provide a common format for the export of identification results from any software package.
metasource: Fairsharing.orgversion: FAIRsharing.org: mzQuantML; mz Quantitative Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.fk6zhb; Last edited: Jan. 8, 2019, 1:30 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Webpage:
http://www.psidev.info/mzquantmlWebpage
More detailed information about this field from each metasource.
http://www.psidev.info/mzquantml
metasource: Fairsharing.orgversion: FAIRsharing.org: mzQuantML; mz Quantitative Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.fk6zhb; Last edited: Jan. 8, 2019, 1:30 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Licence:
Name: Mozilla Public LicenseLicence name
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Mozilla Public License
metasource: Fairsharing.orgversion: FAIRsharing.org: mzQuantML; mz Quantitative Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.fk6zhb; Last edited: Jan. 8, 2019, 1:30 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Licence URL
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https://www.mozilla.org/en-US/MPL/
metasource: Fairsharing.orgversion: FAIRsharing.org: mzQuantML; mz Quantitative Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.fk6zhb; Last edited: Jan. 8, 2019, 1:30 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics
PMID: 23599424
metasource: Fairsharing.org
version: FAIRsharing.org: mzQuantML; mz Quantitative Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.fk6zhb; Last edited: Jan. 8, 2019, 1:30 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Publications
More detailed information about this field from each metasource.
The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics
PMID: 23599424
metasource: Fairsharing.org
version: FAIRsharing.org: mzQuantML; mz Quantitative Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.fk6zhb; Last edited: Jan. 8, 2019, 1:30 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
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The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics
PubMed citations: 29.
29 articles citing: The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics
Software Options for the Analysis of MS-Proteomic Data. PMID:34236654
DNMSO; an ontology for representing de novo sequencing results from Tandem-MS data. PMID:33150092
Proteomics Standards Initiative Extended FASTA Format. PMID:31081335
iProX: an integrated proteome resource. PMID:30252093
Public proteomics data: How the field has evolved from sceptical inquiry to the promise of in silico proteomics. PMID:29900110
The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data. PMID:29386051
Proteomics Standards Initiative: Fifteen Years of Progress and Future Work. PMID:28849660
The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics. PMID:28515314
A Golden Age for Working with Public Proteomics Data. PMID:28118949
CSF-PR 2.0: An Interactive Literature Guide to Quantitative Cerebrospinal Fluid Mass Spectrometry Data from Neurodegenerative Disorders. PMID:27890865
Algorithms and design strategies towards automated glycoproteomics analysis. PMID:26728195
2016 update of the PRIDE database and its related tools. PMID:26527722
COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access. PMID:26491418
Exploring the potential of public proteomics data. PMID:26449181
The mzqLibrary--An open source Java library supporting the HUPO-PSI quantitative proteomics standard. PMID:26037908
Representation of selected-reaction monitoring data in the mzQuantML data standard. PMID:25884107
Development of data representation standards by the human proteome organization proteomics standards initiative. PMID:25726569
Trans-Proteomic Pipeline, a standardized data processing pipeline for large-scale reproducible proteomics informatics. PMID:25631240
Computational phosphoproteomics: from identification to localization. PMID:25475148
Identifying novel biomarkers through data mining-a realistic scenario? PMID:25347964
Making proteomics data accessible and reusable: current state of proteomics databases and repositories. PMID:25158685
A standardized framing for reporting protein identifications in mzIdentML 1.2. PMID:25092112
The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience. PMID:24980485
qcML: an exchange format for quality control metrics from mass spectrometry experiments. PMID:24760958
jmzTab: a java interface to the mzTab data standard. PMID:24659499
BiNA: a visual analytics tool for biological network data. PMID:24551056
The jmzQuantML programming interface and validator for the mzQuantML data standard. PMID:24453188
A tutorial for software development in quantitative proteomics using PSI standard formats. PMID:23584085
Controlled vocabularies and ontologies in proteomics: overview, principles and practice. PMID:23429179
Tags:
Tags
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experimental measurement
metasource: Fairsharing.org
version: FAIRsharing.org: mzQuantML; mz Quantitative Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.fk6zhb; Last edited: Jan. 8, 2019, 1:30 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: mzQuantML; mz Quantitative Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.fk6zhb; Last edited: Jan. 8, 2019, 1:30 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
quantification
metasource: Fairsharing.org
version: FAIRsharing.org: mzQuantML; mz Quantitative Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.fk6zhb; Last edited: Jan. 8, 2019, 1:30 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
Tags
More detailed information about this field from each metasource.
experimental measurement
metasource: Fairsharing.orgversion: FAIRsharing.org: mzQuantML; mz Quantitative Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.fk6zhb; Last edited: Jan. 8, 2019, 1:30 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: mzQuantML; mz Quantitative Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.fk6zhb; Last edited: Jan. 8, 2019, 1:30 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
quantification
metasource: Fairsharing.orgversion: FAIRsharing.org: mzQuantML; mz Quantitative Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.fk6zhb; Last edited: Jan. 8, 2019, 1:30 p.m.; Last accessed: Jan 03 2022 7:11 p.m.
experimental measurement protein quantification
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