Systems Biology Results Markup Language
Names
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Systems Biology Results Markup Language
metasource: Fairsharing.org
version: FAIRsharing.org: SBRML; Systems Biology Results Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zevp0z; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
SBRML
metasource: Fairsharing.org
version: FAIRsharing.org: SBRML; Systems Biology Results Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zevp0z; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Names
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Systems Biology Results Markup Language
metasource: Fairsharing.orgversion: FAIRsharing.org: SBRML; Systems Biology Results Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zevp0z; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
SBRML
metasource: Fairsharing.orgversion: FAIRsharing.org: SBRML; Systems Biology Results Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zevp0z; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Names
More detailed information about this field from each metasource.
Systems Biology Results Markup Language
metasource: Fairsharing.orgversion: FAIRsharing.org: SBRML; Systems Biology Results Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zevp0z; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
SBRML
metasource: Fairsharing.orgversion: FAIRsharing.org: SBRML; Systems Biology Results Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zevp0z; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Systems Biology Results markup language (SBRML) specifies models composed of molecular species, and their interactions (including reactions). The markup language is intended to specify results from operations carried out on models Ñ SBRML. This resource can be used to communicate experimental data as long as it is possible to express the data in terms of a reference SBML model. SBRML is a means of specifying quantitative results in the context of a systems biology model.
Description
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Systems Biology Results markup language (SBRML) specifies models composed of molecular species, and their interactions (including reactions). The markup language is intended to specify results from operations carried out on models Ñ SBRML. This resource can be used to communicate experimental data as long as it is possible to express the data in terms of a reference SBML model. SBRML is a means of specifying quantitative results in the context of a systems biology model.
metasource: Fairsharing.orgversion: FAIRsharing.org: SBRML; Systems Biology Results Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zevp0z; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Webpage:
http://www.comp-sys-bio.org/SBRML.htmlWebpage
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http://www.comp-sys-bio.org/SBRML.html
metasource: Fairsharing.orgversion: FAIRsharing.org: SBRML; Systems Biology Results Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zevp0z; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Licence:
Name: Academic Free License (AFL)Licence name
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Academic Free License (AFL)
metasource: Fairsharing.orgversion: FAIRsharing.org: SBRML; Systems Biology Results Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zevp0z; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Licence URL
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https://opensource.org/licenses/AFL-3.0
metasource: Fairsharing.orgversion: FAIRsharing.org: SBRML; Systems Biology Results Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zevp0z; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Publications:
Publications
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SBRML: a markup language for associating systems biology data with models
PMID: 20176582
metasource: Fairsharing.org
version: FAIRsharing.org: SBRML; Systems Biology Results Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zevp0z; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Publications
More detailed information about this field from each metasource.
SBRML: a markup language for associating systems biology data with models
PMID: 20176582
metasource: Fairsharing.org
version: FAIRsharing.org: SBRML; Systems Biology Results Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zevp0z; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
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SBRML: a markup language for associating systems biology data with models
PubMed citations: 22.
22 articles citing: SBRML: a markup language for associating systems biology data with models
PEtab-Interoperable specification of parameter estimation problems in systems biology. PMID:33497393
Best Practices for Making Reproducible Biochemical Models. PMID:32853539
Data Management in Computational Systems Biology: Exploring Standards, Tools, Databases, and Packaging Best Practices. PMID:31602618
Reproducible Research Using Biomodels. PMID:30191472
Computational Population Biology: Linking the inner and outer worlds of organisms. PMID:29051719
A fully featured COMBINE archive of a simulation study on syncytial mitotic cycles in Drosophila embryos. PMID:27830063
GESDB: a platform of simulation resources for genetic epidemiology studies. PMID:27242038
HEPNet: A Knowledge Base Model of Human Energy Pool Network for Predicting the Energy Availability Status of an Individual. PMID:26053019
Automatising the analysis of stochastic biochemical time-series. PMID:26051821
Promoting Coordinated Development of Community-Based Information Standards for Modeling in Biology: The COMBINE Initiative. PMID:25759811
Combining computational models, semantic annotations and simulation experiments in a graph database. PMID:25754863
Improving collaboration by standardization efforts in systems biology. PMID:25538939
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project. PMID:25494900
Biological Dynamics Markup Language (BDML): an open format for representing quantitative biological dynamics data. PMID:25414366
An analysis of a 'community-driven' reconstruction of the human metabolic network. PMID:23888127
Multiscale modeling and data integration in the virtual physiological rat project. PMID:22805979
A review of spatial computational models for multi-cellular systems, with regard to intestinal crypts and colorectal cancer development. PMID:22565629
Reproducible computational biology experiments with SED-ML--the Simulation Experiment Description Markup Language. PMID:22172142
Software for systems biology: from tools to integrated platforms. PMID:22048662
Controlled vocabularies and semantics in systems biology. PMID:22027554
Systematic integration of experimental data and models in systems biology. PMID:21114840
Towards a unifying, systems biology understanding of large-scale cellular death and destruction caused by poorly liganded iron: Parkinson's, Huntington's, Alzheimer's, prions, bactericides, chemical toxicology and others as examples. PMID:20967426
Tags:
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enzymatic reaction
metasource: Fairsharing.org
version: FAIRsharing.org: SBRML; Systems Biology Results Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zevp0z; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
modeling and simulation
metasource: Fairsharing.org
version: FAIRsharing.org: SBRML; Systems Biology Results Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zevp0z; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Tags
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enzymatic reaction
metasource: Fairsharing.orgversion: FAIRsharing.org: SBRML; Systems Biology Results Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zevp0z; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
modeling and simulation
metasource: Fairsharing.orgversion: FAIRsharing.org: SBRML; Systems Biology Results Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.zevp0z; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
enzymatic reaction modeling and simulation
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