Quality Control Markup Language
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Quality Control Markup Language
metasource: Fairsharing.org
version: FAIRsharing.org: QCML; Quality Control Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.dmhjcg; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
QCML
metasource: Fairsharing.org
version: FAIRsharing.org: QCML; Quality Control Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.dmhjcg; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Names
More detailed information about this field from each metasource.
Quality Control Markup Language
metasource: Fairsharing.orgversion: FAIRsharing.org: QCML; Quality Control Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.dmhjcg; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
QCML
metasource: Fairsharing.orgversion: FAIRsharing.org: QCML; Quality Control Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.dmhjcg; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Names
More detailed information about this field from each metasource.
Quality Control Markup Language
metasource: Fairsharing.orgversion: FAIRsharing.org: QCML; Quality Control Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.dmhjcg; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
QCML
metasource: Fairsharing.orgversion: FAIRsharing.org: QCML; Quality Control Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.dmhjcg; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
An XML format for quality-related data of mass spectrometry and other high-throughput experiments. Quality control is increasingly recognized as a crucial aspect of mass spectrometry based proteomics. Several recent papers discuss relevant parameters for quality control and present applications to extract these from the instrumental raw data. What has been missing, however, is a standard data exchange format for reporting these performance metrics. We therefore developed the qcML format, an XML-based standard that follows the design principles of the related mzML, mzIdentML, mzQuantML, and TraML standards from the HUPO-PSI (Proteomics Standards Initiative). In addition to the XML format, we also provide tools for the calculation of a wide range of quality metrics as well as a database format and interconversion tools, so that existing LIMS systems can easily add relational storage of the quality control data to their existing schema. We here describe the qcML specification, along with possible use cases and an illustrative example of the subsequent analysis possibilities.
Description
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An XML format for quality-related data of mass spectrometry and other high-throughput experiments. Quality control is increasingly recognized as a crucial aspect of mass spectrometry based proteomics. Several recent papers discuss relevant parameters for quality control and present applications to extract these from the instrumental raw data. What has been missing, however, is a standard data exchange format for reporting these performance metrics. We therefore developed the qcML format, an XML-based standard that follows the design principles of the related mzML, mzIdentML, mzQuantML, and TraML standards from the HUPO-PSI (Proteomics Standards Initiative). In addition to the XML format, we also provide tools for the calculation of a wide range of quality metrics as well as a database format and interconversion tools, so that existing LIMS systems can easily add relational storage of the quality control data to their existing schema. We here describe the qcML specification, along with possible use cases and an illustrative example of the subsequent analysis possibilities.
metasource: Fairsharing.orgversion: FAIRsharing.org: QCML; Quality Control Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.dmhjcg; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Webpage:
http://www.psidev.info/groups/quality-controlWebpage
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http://www.psidev.info/groups/quality-control
metasource: Fairsharing.orgversion: FAIRsharing.org: QCML; Quality Control Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.dmhjcg; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications:
Publications
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qcML: an exchange format for quality control metrics from mass spectrometry experiments
PMID: 24760958
metasource: Fairsharing.org
version: FAIRsharing.org: QCML; Quality Control Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.dmhjcg; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications
More detailed information about this field from each metasource.
qcML: an exchange format for quality control metrics from mass spectrometry experiments
PMID: 24760958
metasource: Fairsharing.org
version: FAIRsharing.org: QCML; Quality Control Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.dmhjcg; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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qcML: an exchange format for quality control metrics from mass spectrometry experiments
PubMed citations: 10.
10 articles citing: qcML: an exchange format for quality control metrics from mass spectrometry experiments
Public proteomics data: How the field has evolved from sceptical inquiry to the promise of in silico proteomics. PMID:29900110
QCloud: A cloud-based quality control system for mass spectrometry-based proteomics laboratories. PMID:29324744
Proteomics Standards Initiative: Fifteen Years of Progress and Future Work. PMID:28849660
A Golden Age for Working with Public Proteomics Data. PMID:28118949
Omics-Based Strategies in Precision Medicine: Toward a Paradigm Shift in Inborn Errors of Metabolism Investigations. PMID:27649151
BatMass: a Java Software Platform for LC-MS Data Visualization in Proteomics and Metabolomics. PMID:27306858
Label-free quantification in ion mobility-enhanced data-independent acquisition proteomics. PMID:27010757
2016 update of the PRIDE database and its related tools. PMID:26527722
Development of data representation standards by the human proteome organization proteomics standards initiative. PMID:25726569
Workflows for automated downstream data analysis and visualization in large-scale computational mass spectrometry. PMID:25604327
Tags:
Tags
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chromatin immunoprecipitation - dna sequencing
metasource: Fairsharing.org
version: FAIRsharing.org: QCML; Quality Control Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.dmhjcg; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
quality control
metasource: Fairsharing.org
version: FAIRsharing.org: QCML; Quality Control Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.dmhjcg; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
rna sequencing
metasource: Fairsharing.org
version: FAIRsharing.org: QCML; Quality Control Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.dmhjcg; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Tags
More detailed information about this field from each metasource.
chromatin immunoprecipitation - dna sequencing
metasource: Fairsharing.orgversion: FAIRsharing.org: QCML; Quality Control Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.dmhjcg; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
quality control
metasource: Fairsharing.orgversion: FAIRsharing.org: QCML; Quality Control Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.dmhjcg; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
rna sequencing
metasource: Fairsharing.orgversion: FAIRsharing.org: QCML; Quality Control Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.dmhjcg; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
chromatin immunoprecipitation - dna sequencing quality control rna sequence
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