OmicsDI XML format
XML Schema definition for the OmicsDI XML format.
Description
More detailed information about this field from each metasource.
XML Schema definition for the OmicsDI XML format.
metasource: Fairsharing.orgversion: FAIRsharing.org: OmicsDI XML format; OmicsDI XML format; DOI: https://doi.org/10.25504/FAIRsharing.2hqa97; Last edited: March 2, 2020, 12:25 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
Webpage:
https://github.com/OmicsDI/specifications/blob/master/docs/schema/OmicsDISchema.xsdWebpage
More detailed information about this field from each metasource.
https://github.com/OmicsDI/specifications/blob/master/docs/schema/OmicsDISchema.xsd
metasource: Fairsharing.orgversion: FAIRsharing.org: OmicsDI XML format; OmicsDI XML format; DOI: https://doi.org/10.25504/FAIRsharing.2hqa97; Last edited: March 2, 2020, 12:25 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
Licence:
Name: EMBL-EBI Terms of UseLicence name
More detailed information about this field from each metasource.
EMBL-EBI Terms of Use
metasource: Fairsharing.orgversion: FAIRsharing.org: OmicsDI XML format; OmicsDI XML format; DOI: https://doi.org/10.25504/FAIRsharing.2hqa97; Last edited: March 2, 2020, 12:25 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
Licence URL
More detailed information about this field from each metasource.
http://www.ebi.ac.uk/about/terms-of-use
metasource: Fairsharing.orgversion: FAIRsharing.org: OmicsDI XML format; OmicsDI XML format; DOI: https://doi.org/10.25504/FAIRsharing.2hqa97; Last edited: March 2, 2020, 12:25 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Discovering and linking public omics data sets using the Omics Discovery Index
PMID: 28486464
metasource: Fairsharing.org
version: FAIRsharing.org: OmicsDI XML format; OmicsDI XML format; DOI: https://doi.org/10.25504/FAIRsharing.2hqa97; Last edited: March 2, 2020, 12:25 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
Publications
More detailed information about this field from each metasource.
Discovering and linking public omics data sets using the Omics Discovery Index
PMID: 28486464
metasource: Fairsharing.org
version: FAIRsharing.org: OmicsDI XML format; OmicsDI XML format; DOI: https://doi.org/10.25504/FAIRsharing.2hqa97; Last edited: March 2, 2020, 12:25 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
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Discovering and linking public omics data sets using the Omics Discovery Index
PubMed citations: 70.
70 articles citing: Discovering and linking public omics data sets using the Omics Discovery Index
A Current Encyclopedia of Bioinformatics Tools, Data Formats and Resources for Mass Spectrometry Lipidomics. PMID:35888710
Ecosystem-specific microbiota and microbiome databases in the era of big data. PMID:35842686
Applications of Omics Technology for Livestock Selection and Improvement. PMID:35719396
BOSO: A novel feature selection algorithm for linear regression with high-dimensional data. PMID:35639775
The Potential of Metabolomics in Biomedical Applications. PMID:35208267
Cloud-based archived metabolomics data: A resource for in-source fragmentation/annotation, meta-analysis and systems biology. PMID:35190800
Integrative OMICS Data-Driven Procedure Using a Derivatized Meta-Analysis Approach. PMID:35186042
Perspective of the GEMSTONE Consortium on Current and Future Approaches to Functional Validation for Skeletal Genetic Disease Using Cellular, Molecular and Animal-Modeling Techniques. PMID:34938269
Supervised Methods for Biomarker Detection from Microarray Experiments. PMID:34902125
Building Structural Models of a Whole Mycoplasma Cell. PMID:34774566
A proteomics sample metadata representation for multiomics integration and big data analysis. PMID:34615866
Omics in a Digital World: The Role of Bioinformatics in Providing New Insights Into Human Aging. PMID:34178042
Proteomics and Epidemiological Models of Human Aging. PMID:34135771
Review of multi-omics data resources and integrative analysis for human brain disorders. PMID:33969380
Multi-Layer Picture of Neurodegenerative Diseases: Lessons from the Use of Big Data through Artificial Intelligence. PMID:33917161
Human OMICs and Computational Biology Research in Africa: Current Challenges and Prospects. PMID:33794662
A Second Look at FAIR in Proteomic Investigations. PMID:33719446
Transcriptomic profiling of long- and short-lived mutant mice implicates mitochondrial metabolism in ageing and shows signatures of normal ageing in progeroid mice. PMID:33454277
State of the Field in Multi-Omics Research: From Computational Needs to Data Mining and Sharing. PMID:33362867
Systematic Review of Multi-Omics Approaches to Investigate Toxicological Effects in Macrophages. PMID:33317022
Multi-omics integration in biomedical research - A metabolomics-centric review. PMID:33248648
Datanator: an integrated database of molecular data for quantitatively modeling cellular behavior. PMID:33174603
Artificial Intelligence (AI)-Based Systems Biology Approaches in Multi-Omics Data Analysis of Cancer. PMID:33154949
Multiomic Integration of Public Oncology Databases in Bioconductor. PMID:33119407
Integrative analysis of multi-omics data for discovering low-frequency variants associated with low-density lipoprotein cholesterol levels. PMID:33070182
Applications of Genome-Wide Screening and Systems Biology Approaches in Drug Repositioning. PMID:32967266
SCALEUS-FD: A FAIR Data Tool for Biomedical Applications. PMID:32908882
Reproducible molecular networking of untargeted mass spectrometry data using GNPS. PMID:32405051
The omics discovery REST interface. PMID:32374843
Multi-omics Data Integration, Interpretation, and Its Application. PMID:32076369
All of gene expression (AOE): An integrated index for public gene expression databases. PMID:31978081
Mass spectrometry searches using MASST. PMID:31894142
Reactome and ORCID-fine-grained credit attribution for community curation. PMID:31802127
Cardioinformatics: the nexus of bioinformatics and precision cardiology. PMID:31802103
An omics perspective on drug target discovery platforms. PMID:31774113
DDBJ Database updates and computational infrastructure enhancement. PMID:31724722
The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics. PMID:31686107
The Signaling Pathways Project, an integrated 'omics knowledgebase for mammalian cellular signaling pathways. PMID:31672983
InterSpin: Integrated Supportive Webtools for Low- and High-Field NMR Analyses Toward Molecular Complexity. PMID:31459550
Quantifying the impact of public omics data. PMID:31383865
In Silico Toxicology Data Resources to Support Read-Across and (Q)SAR. PMID:31244651
Mass Spectrometry Data Repository Enhances Novel Metabolite Discoveries with Advances in Computational Metabolomics. PMID:31238512
MENDA: a comprehensive curated resource of metabolic characterization in depression. PMID:31157825
Systems Biology and Multi-Omics Integration: Viewpoints from the Metabolomics Research Community. PMID:31003499
The EMBL-EBI search and sequence analysis tools APIs in 2019. PMID:30976793
Unsupervised classification of multi-omics data during cardiac remodeling using deep learning. PMID:30853547
A Primer on Data Analytics in Functional Genomics: How to Move from Data to Insight? PMID:30522862
The PRIDE database and related tools and resources in 2019: improving support for quantification data. PMID:30395289
iProX: an integrated proteome resource. PMID:30252093
Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center. PMID:29917015
Uniform resolution of compact identifiers for biomedical data. PMID:29737976
Biomedical Informatics on the Cloud: A Treasure Hunt for Advancing Cardiovascular Medicine. PMID:29700073
Cardiovascular Metabolomics. PMID:29700070
A FAIR guide for data providers to maximise sharing of human genomic data. PMID:29543799
A lost opportunity for science: journals promote data sharing in metabolomics but do not enforce it. PMID:29479297
DataMed - an open source discovery index for finding biomedical datasets. PMID:29346583
Accurate and fast feature selection workflow for high-dimensional omics data. PMID:29261781
The European Bioinformatics Institute in 2017: data coordination and integration. PMID:29186510
BioModels: expanding horizons to include more modelling approaches and formats. PMID:29106614
LiverWiki: a wiki-based database for human liver. PMID:29029599
Proteomics Standards Initiative: Fifteen Years of Progress and Future Work. PMID:28849660
Advances in metabolome information retrieval: turning chemistry into biology. Part II: biological information recovery. PMID:28842777
Search Datasets in Literature: A Case Study of GWAS. PMID:28815103
OLS Client and OLS Dialog: Open Source Tools to Annotate Public Omics Datasets. PMID:28792687
Workflow and web application for annotating NCBI BioProject transcriptome data. PMID:28605765
DATS, the data tag suite to enable discoverability of datasets. PMID:28585923
Finding useful data across multiple biomedical data repositories using DataMed. PMID:28546571
Unbiased Protein Association Study on the Public Human Proteome Reveals Biological Connections between Co-Occurring Protein Pairs. PMID:28480704
A Golden Age for Working with Public Proteomics Data. PMID:28118949
Microbial phenomics information extractor (MicroPIE): a natural language processing tool for the automated acquisition of prokaryotic phenotypic characters from text sources. PMID:27955641
Tags:
Tags
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data identity and mapping
metasource: Fairsharing.org
version: FAIRsharing.org: OmicsDI XML format; OmicsDI XML format; DOI: https://doi.org/10.25504/FAIRsharing.2hqa97; Last edited: March 2, 2020, 12:25 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
Tags
More detailed information about this field from each metasource.
data identity and mapping
metasource: Fairsharing.orgversion: FAIRsharing.org: OmicsDI XML format; OmicsDI XML format; DOI: https://doi.org/10.25504/FAIRsharing.2hqa97; Last edited: March 2, 2020, 12:25 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
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