PRIDE XML Format

XML submission format for the PRIDE repository at the EBI.

Webpage:

http://www.ebi.ac.uk/pride/help/archive/submission/pridexml

Licence:

Name: EMBL-EBI Terms of Use
URL: http://www.ebi.ac.uk/about/terms-of-use

Publications:

Publications
More detailed information about this field from each metasource.

2016 update of the PRIDE database and its related tools
PMID: 26527722
metasource: Fairsharing.org
version: FAIRsharing.org: PRIDE XML Format; PRIDE XML Format; DOI: https://doi.org/10.25504/FAIRsharing.975659; Last edited: Feb. 6, 2020, 1:21 p.m.; Last accessed: Jan 03 2022 7:10 p.m.

ProteomeXchange provides globally coordinated proteomics data submission and dissemination
PMID: 24727771
metasource: Fairsharing.org
version: FAIRsharing.org: PRIDE XML Format; PRIDE XML Format; DOI: https://doi.org/10.25504/FAIRsharing.975659; Last edited: Feb. 6, 2020, 1:21 p.m.; Last accessed: Jan 03 2022 7:10 p.m.

How to submit MS proteomics data to ProteomeXchange via the PRIDE database
PMID: 25047258
metasource: Fairsharing.org
version: FAIRsharing.org: PRIDE XML Format; PRIDE XML Format; DOI: https://doi.org/10.25504/FAIRsharing.975659; Last edited: Feb. 6, 2020, 1:21 p.m.; Last accessed: Jan 03 2022 7:10 p.m.

2016 update of the PRIDE database and its related tools PubMed citations: 1628.

1628 articles citing: 2016 update of the PRIDE database and its related tools

Comprehensive and systematic characterization of multi-functionalized cisplatin nano-conjugate: from the chemistry and proteomic biocompatibility to the animal model. PMID:35858906
Identification of growth hormone receptor as a relevant target for precision medicine in low-EGFR expressing glioblastoma. PMID:35808822
Reconstruction of a catalogue of genome-scale metabolic models with enzymatic constraints using GECKO 2.0. PMID:35773252
Computational cancer neoantigen prediction: current status and recent advances. PMID:35755950
Light Quality Modulates Plant Cold Response and Freezing Tolerance. PMID:35755673
A Dual-Acting Nitric Oxide Donor and Phosphodiesterase 5 Inhibitor Activates Autophagy in Primary Skin Fibroblasts. PMID:35743299
Selective modulation of cell surface proteins during vaccinia infection: A resource for identifying viral immune evasion strategies. PMID:35727847
Integration of Transcriptomics Data and Metabolomic Data Using Biomedical Literature Mining and Pathway Analysis. PMID:35713871
Stimulating Effect of Trichococcus flocculiformis on a Coculture of Syntrophomonas wolfei and Methanospirillum hungatei. PMID:35699440
Patterning of the Autotrophic, Mixotrophic, and Heterotrophic Proteomes of Oxygen-Evolving Cyanobacterium Synechocystis sp. PCC 6803. PMID:35694301
In-depth Profiling and Quantification of the Lysine Acetylome in Hepatocellular Carcinoma with a Trapped Ion Mobility Mass Spectrometer. PMID:35688384
A phylogenetic and proteomic reconstruction of eukaryotic chromatin evolution. PMID:35680998
Crizotinib Shows Antibacterial Activity against Gram-Positive Bacteria by Reducing ATP Production and Targeting the CTP Synthase PyrG. PMID:35674439
Manganese Modulates Metabolic Activity and Redox Homeostasis in Translationally Blocked Lactococcus cremoris, Impacting Metabolic Persistence, Cell Culturability, and Flavor Formation. PMID:35638825
InvL, an Invasin-Like Adhesin, Is a Type II Secretion System Substrate Required for Acinetobacter baumannii Uropathogenesis. PMID:35638734
Brain Proteome and Behavioural Analysis in Wild Type, BDNF+/- and BDNF-/- Adult Zebrafish (Danio rerio) Exposed to Two Different Temperatures. PMID:35628418
Ethanolamine-phosphate on the second mannose is a preferential bridge for some GPI-anchored proteins. PMID:35603428
Effect of Sample Transportation on the Proteome of Human Circulating Blood Extracellular Vesicles. PMID:35562906
Thymosin β4 cytoplasmic/nuclear translocation as a new marker of cellular stress. A Caco2 case study. PMID:35497634
Cas1 and Fen1 Display Equivalent Functions During Archaeal DNA Repair. PMID:35495653
Global, distinctive, and personal changes in molecular and microbial profiles by specific fibers in humans. PMID:35483363
The Phenylacetic Acid Catabolic Pathway Regulates Antibiotic and Oxidative Stress Responses in Acinetobacter. PMID:35467424
A Monoclonal Anti-HMGB1 Antibody Attenuates Neurodegeneration in an Experimental Animal Model of Glaucoma. PMID:35456925
Moving translational mass spectrometry imaging towards transparent and reproducible data analyses: a case study of an urothelial cancer cohort analyzed in the Galaxy framework. PMID:35439943
A Wide-Proteome Analysis to Identify Molecular Pathways Involved in Kidney Response to High-Fat Diet in Mice. PMID:35409168
Effects of Fe and Mn Deficiencies on the Root Protein Profiles of Tomato (Solanum lycopersicum) Using Two-Dimensional Electrophoresis and Label-Free Shotgun Analyses. PMID:35409079
Physiological Roles of Short-Chain and Long-Chain Menaquinones (Vitamin K2) in Lactococcus cremoris. PMID:35369466
Posttranslational modification of the RHO of plants protein RACB by phosphorylation and cross-kingdom conserved ubiquitination. PMID:35333858
SWATH-MS identification of CXCL7, LBP, TGFβ1 and PDGFRβ as novel biomarkers in human systemic mastocytosis. PMID:35332176
LC-MS/MS-Based Serum Protein Profiling for Identification of Candidate Biomarkers in Pakistani Rheumatoid Arthritis Patients. PMID:35330214
PCBP2 maintains antiviral signaling homeostasis by regulating cGAS enzymatic activity via antagonizing its condensation. PMID:35322803
Vertebrate lonesome kinase modulates the hepatocyte secretome to prevent perivascular liver fibrosis and inflammation. PMID:35293576
The life history of Drosophila sperm involves molecular continuity between male and female reproductive tracts. PMID:35254899
Macrophages secrete murinoglobulin-1 and galectin-3 to regulate neutrophil degranulation after myocardial infarction. PMID:35230372
Shotgun Proteomics as a Powerful Tool for the Study of the Proteomes of Plants, Their Pathogens, and Plant-Pathogen Interactions. PMID:35225985
Review of Liquid Chromatography-Mass Spectrometry-Based Proteomic Analyses of Body Fluids to Diagnose Infectious Diseases. PMID:35216306
Label-free proteome data of susceptible and resistant rice cultivars in response to Xanthomonas oryzae pv. oryzae inoculation. PMID:35198671
Characterization of Glycoproteoforms of Integrins α2 and β1 in Megakaryocytes in the Occurrence of JAK2V617F Mutation-Induced Primary Myelofibrosis. PMID:35182768
The H. pylori CagA Oncoprotein Induces DNA Double Strand Breaks through Fanconi Anemia Pathway Downregulation and Replication Fork Collapse. PMID:35163588
Proteome Profiling of Mycobacterium tuberculosis Cells Exposed to Nitrosative Stress. PMID:35128256
Receptor-interacting protein kinase 2 (RIPK2) stabilizes c-Myc and is a therapeutic target in prostate cancer metastasis. PMID:35115556
Exploring Human Milk Dynamics: Interindividual Variation in Milk Proteome, Peptidome, and Metabolome. PMID:35104145
Vps501, a novel vacuolar SNX-BAR protein cooperates with the SEA complex to regulate TORC1 signaling. PMID:35098628
Activity-Based Protein Profiling for the Identification of Novel Carbohydrate-Active Enzymes Involved in Xylan Degradation in the Hyperthermophilic Euryarchaeon Thermococcus sp. Strain 2319x1E. PMID:35095781
High Throughput Screening of a Prescription Drug Library for Inhibitors of Organic Cation Transporter 3, OCT3. PMID:35089508
Proteomic Characterization of Dry Blood Spots of Healthy Women During Simulation the Microgravity Effects Using Dry Immersion. PMID:35087415
Proteomic analysis of metabolic pathways supports chloroplast-mitochondria cross-talk in a Cu-limited diatom. PMID:35079683
Tau interactome maps synaptic and mitochondrial processes associated with neurodegeneration. PMID:35063084
Detection and quantitation of host cell proteins in monoclonal antibody drug products using automated sample preparation and data-independent acquisition LC-MS/MS. PMID:35028177
Amaranthus hypochondriacus seeds as a rich source of cysteine rich bioactive peptides. PMID:34995961
Comparative genomics and proteomics of Eubacterium maltosivorans: functional identification of trimethylamine methyltransferases and bacterial microcompartments in a human intestinal bacterium with a versatile lifestyle. PMID:34978130
Proteomic Analysis of a Syntrophic Coculture of Syntrophobacter fumaroxidans MPOBT and Geobacter sulfurreducens PCAT. PMID:34950111
Evaluation of Sample Preservation and Storage Methods for Metaproteomics Analysis of Intestinal Microbiomes. PMID:34908431
A novel strategy to uncover specific GO terms/phosphorylation pathways in phosphoproteomic data in Arabidopsis thaliana. PMID:34906086
BoxCar and shotgun proteomic analyses reveal molecular networks regulated by UBR5 in prostate cancer. PMID:34897998
Mass Spectrometric Identification of Antimicrobial Peptides from Medicinal Seeds. PMID:34885884
Quantitative Proteomics and Differential Protein Abundance Analysis after the Depletion of PEX3 from Human Cells Identifies Additional Aspects of Protein Targeting to the ER. PMID:34884833
Proteogenomics analysis of CUG codon translation in the human pathogen Candida albicans. PMID:34863173
ATR inhibition enables complete tumour regression in ALK-driven NB mouse models. PMID:34819497
Statins affect cancer cell plasticity with distinct consequences for tumor progression and metastasis. PMID:34818551
Inositol 1,4,5-trisphosphate receptor type 3 (ITPR3) is overexpressed in cholangiocarcinoma and its expression correlates with S100 calcium-binding protein A4 (S100A4). PMID:34798470
Defactinib inhibits PYK2 phosphorylation of IRF5 and reduces intestinal inflammation. PMID:34795257
Hepatocyte-specific perturbation of NAD+ biosynthetic pathways in mice induces reversible nonalcoholic steatohepatitis-like phenotypes. PMID:34762911
Conditions for maintenance of hepatocyte differentiation and function in 3D cultures. PMID:34746700
The Two-Component System RstA/RstB Regulates Expression of Multiple Efflux Pumps and Influences Anaerobic Nitrate Respiration in Pseudomonas fluorescens. PMID:34726491
Lactococcus lactis Mutants Obtained From Laboratory Evolution Showed Elevated Vitamin K2 Content and Enhanced Resistance to Oxidative Stress. PMID:34721346
Evaluation of RNAlater as a Field-Compatible Preservation Method for Metaproteomic Analyses of Bacterium-Animal Symbioses. PMID:34704828
Defining NASH from a Multi-Omics Systems Biology Perspective. PMID:34682795
Identification of Biochemical and Molecular Markers of Early Aging in Childhood Cancer Survivors. PMID:34680366
Targeting public neoantigens for cancer immunotherapy. PMID:34676374
Multiomic profiling of the liver across diets and age in a diverse mouse population. PMID:34666007
Characterization of the Human Eccrine Sweat Proteome-A Focus on the Biological Variability of Individual Sweat Protein Profiles. PMID:34639210
Na+-Coupled Respiration and Reshaping of Extracellular Polysaccharide Layer Counteract Monensin-Induced Cation Permeability in Prevotella bryantii B14. PMID:34638543
Delineating the Switch between Senescence and Apoptosis in Cervical Cancer Cells under Ciclopirox Treatment. PMID:34638479
A Linkage-specific Sialic Acid Labeling Strategy Reveals Different Site-specific Glycosylation Patterns in SARS-CoV-2 Spike Protein Produced in CHO and HEK Cell Substrates. PMID:34631661
Combined serum anti-SSA/Ro and salivary TRIM29 reveals promising high diagnostic accuracy in patients with primary Sjögren's syndrome. PMID:34624052
Analysis of Brain Protein Stability Changes in Mouse Models of Normal Aging and α-Synucleinopathy Reveals Age- and Disease-Related Differences. PMID:34606284
Investigation of the blood proteome in response to spinal cord injury in rodent models. PMID:34601498
Atypical activation of signaling downstream of inactivated Bcr-Abl mediates chemoresistance in chronic myeloid leukemia. PMID:34596797
A Shotgun Proteomic Platform for a Global Mapping of Lymphoblastoid Cells to Gain Insight into Nasu-Hakola Disease. PMID:34576123
The Cell Wall Proteome of Craterostigma plantagineum Cell Cultures Habituated to Dichlobenil and Isoxaben. PMID:34571944
A phosphatase-centric mechanism drives stress signaling response. PMID:34558777
Discovery of a small protein-encoding cis-regulatory overlapping gene of the tumor suppressor gene Scribble in humans. PMID:34535749
Data-Independent-Acquisition-Based Proteomic Approach towards Understanding the Acclimation Strategy of Oleaginous Microalga Microchloropsis gaditana CCMP526 in Hypersaline Conditions. PMID:34497906
Burkholderia PglL enzymes are Serine preferring oligosaccharyltransferases which target conserved proteins across the Burkholderia genus. PMID:34493791
Elamipretide (SS-31) treatment attenuates age-associated post-translational modifications of heart proteins. PMID:34480713
An Integrated Transcriptomics and Proteomics Analysis Implicates lncRNA MALAT1 in the Regulation of Lipid Metabolism. PMID:34478876
Tight Adherence (Tad) Pilus Genes Indicate Putative Niche Differentiation in Phytoplankton Bloom Associated Rhodobacterales. PMID:34447362
Accessory enzymes of hypercellulolytic Penicillium funiculosum facilitate complete saccharification of sugarcane bagasse. PMID:34446097
Too Hot to Handle: Antibacterial Peptides Identified in Ghost Pepper. PMID:34445876
Isotopically Dimethyl Labeling-Based Quantitative Proteomic Analysis of Phosphoproteomes of Soybean Cultivars. PMID:34439883
Proteome Dynamics during Antibiotic Persistence and Resuscitation. PMID:34427514
Sodium valproate increases activity of the sirtuin pathway resulting in beneficial effects for spinocerebellar ataxia-3 in vivo. PMID:34416891
Allotype-Specific Glycosylation and Cellular Localization of Human Leukocyte Antigen Class I Proteins. PMID:34415762
PRIMUS: Comprehensive proteomics of mouse intervertebral discs that inform novel biology and relevance to human disease modelling. PMID:34409283
Comparative analysis of stalked and acorn barnacle adhesive proteomes. PMID:34404232
The tumor suppressor folliculin inhibits lactate dehydrogenase A and regulates the Warburg effect. PMID:34381247
Modern Acinetobacter baumannii clinical isolates replicate inside spacious vacuoles and egress from macrophages. PMID:34370792
Activation of the Type VI Secretion System in the Squid Symbiont Vibrio fischeri Requires the Transcriptional Regulator TasR and the Structural Proteins TssM and TssA. PMID:34370559
The Arabidopsis Root Tip (Phospho)Proteomes at Growth-Promoting versus Growth-Repressing Conditions Reveal Novel Root Growth Regulators. PMID:34359847
The non-canonical target PARP16 contributes to polypharmacology of the PARP inhibitor talazoparib and its synergy with WEE1 inhibitors. PMID:34329582
The AGE receptor, OST48 drives podocyte foot process effacement and basement membrane expansion (alters structural composition). PMID:34277994
GIP_HUMAN[22-51] is a new proatherogenic peptide identified by native plasma peptidomics. PMID:34262109
CdrS Is a Global Transcriptional Regulator Influencing Cell Division in Haloferax volcanii. PMID:34253062
DIAmeter: matching peptides to data-independent acquisition mass spectrometry data. PMID:34252924
APOE genotype dependent molecular abnormalities in the cerebrovasculature of Alzheimer's disease and age-matched non-demented brains. PMID:34238312
Comparative Proteomic Analysis Reveals Varying Impact on Immune Responses in Phorbol 12-Myristate-13-Acetate-Mediated THP-1 Monocyte-to-Macrophage Differentiation. PMID:34234780
Expression Dysregulation as a Mediator of Fitness Costs in Antibiotic Resistance. PMID:34228548
A serum proteome signature to predict mortality in severe COVID-19 patients. PMID:34226277
ALKBH3 partner ASCC3 mediates P-body formation and selective clearance of MMS-induced 1-methyladenosine and 3-methylcytosine from mRNA. PMID:34217309
Redirected nuclear glutamate dehydrogenase supplies Tet3 with α-ketoglutarate in neurons. PMID:34215750
HLA-B and cysteinylated ligands distinguish the antigen presentation landscape of extracellular vesicles. PMID:34211107
Quantitative Proteomics and Differential Protein Abundance Analysis after Depletion of Putative mRNA Receptors in the ER Membrane of Human Cells Identifies Novel Aspects of mRNA Targeting to the ER. PMID:34208277
Gene Replacement in Arabidopsis Reveals Manganese Transport as an Ancient Feature of Human, Plant and Cyanobacterial UPF0016 Proteins. PMID:34194462
Methane-dependent selenate reduction by a bacterial consortium. PMID:34183781
ATP Drives Efficient Terpene Biosynthesis in Marine Thraustochytrids. PMID:34182781
The highly conserved FOXJ1 target CFAP161 is dispensable for motile ciliary function in mouse and Xenopus. PMID:34172766
TNF-α induces endothelial-mesenchymal transition promoting stromal development of pancreatic adenocarcinoma. PMID:34172716
Integrated Quantitative Phosphoproteomics and Cell-based Functional Screening Reveals Specific Pathological Cardiac Hypertrophy-related Phosphorylation Sites. PMID:34158421
High-throughput microfluidic 3D biomimetic model enabling quantitative description of the human breast tumor microenvironment. PMID:34153511
A hub-and-spoke nuclear lamina architecture in trypanosomes. PMID:34151975
Maturation of the preterm gastrointestinal tract can be defined by host and microbial markers for digestion and barrier defense. PMID:34140588
The RNA-binding protein Nab2 regulates the proteome of the developing Drosophila brain. PMID:34139237
Proteomics-Based Data Integration of Wheat Cultivars Facing Fusarium graminearum Strains Revealed a Core-Responsive Pattern Controlling Fusarium Head Blight. PMID:34135919
RNA pull-down confocal nanoscanning (RP-CONA) detects quercetin as pri-miR-7/HuR interaction inhibitor that decreases α-synuclein levels. PMID:34107032
The Effect of Interferons on Presentation of Defective Ribosomal Products as HLA Peptides. PMID:34087483
Molecular Pathobiology of the Cerebrovasculature in Aging and in Alzheimers Disease Cases With Cerebral Amyloid Angiopathy. PMID:34079449
Hepatic stellate cells suppress NK cell-sustained breast cancer dormancy. PMID:34079127
Tripartite Separation of Glomerular Cell Types and Proteomes from Reporter-Free Mice. PMID:34074698
A Small RNA Is Linking CRISPR-Cas and Zinc Transport. PMID:34055875
Bacterial Microcompartment-Dependent 1,2-Propanediol Utilization of Propionibacterium freudenreichii. PMID:34054787
Identification of an Altered Matrix Signature in Kidney Aging and Disease. PMID:34049963
Retinal Proteomics of a Mouse Model of Dystroglycanopathies Reveals Molecular Alterations in Photoreceptors. PMID:34027671
A native conjugative plasmid confers potential selective advantages to plant growth-promoting Bacillus velezensis strain GH1-13. PMID:33990691
Propionate Production from Carbon Monoxide by Synthetic Cocultures of Acetobacterium wieringae and Propionigenic Bacteria. PMID:33990298
The Expression of NTAL and Its Protein Interactors Is Associated With Clinical Outcomes in Acute Myeloid Leukemia. PMID:33971369
Proteomic Studies of Primary Acute Myeloid Leukemia Cells Derived from Patients Before and during Disease-Stabilizing Treatment Based on All-Trans Retinoic Acid and Valproic Acid. PMID:33946813
Bacterial Hsp90 Facilitates the Degradation of Aggregation-Prone Hsp70-Hsp40 Substrates. PMID:33937334
An Integrated Genomic, Proteomic, and Immunopeptidomic Approach to Discover Treatment-Induced Neoantigens. PMID:33936100
HLA Class II Presentation Is Specifically Altered at Elevated Temperatures in the B-Lymphoblastic Cell Line JY. PMID:33933681
Parallel G-quadruplexes recruit the HSV-1 transcription factor ICP4 to promote viral transcription in herpes virus-infected human cells. PMID:33931711
Comprehensive Profiling of Secretome Formulations from Fetal- and Perinatal Human Amniotic Fluid Stem Cells. PMID:33918297
Glycan-Induced Protein Dynamics in Human Norovirus P Dimers Depend on Virus Strain and Deamidation Status. PMID:33917179
Daytime Restricted Feeding Affects Day-Night Variations in Mouse Cerebellar Proteome. PMID:33912010
Knock out of specific maternal vitellogenins in zebrafish (Danio rerio) evokes vital changes in egg proteomic profiles that resemble the phenotype of poor quality eggs. PMID:33910518
Erosion of human X chromosome inactivation causes major remodeling of the iPSC proteome. PMID:33910018
Coupled microbiome analyses highlights relative functional roles of bacteria in a bivalve hatchery. PMID:33902744
Molecular insights into plant desiccation tolerance: transcriptomics, proteomics and targeted metabolite profiling in Craterostigma plantagineum. PMID:33901322
Proteomic Profiling of IgG1 Producing CHO Cells Using LC/LC-SPS-MS3: The Effects of Bioprocessing Conditions on Productivity and Product Quality. PMID:33898396
Online biophysical predictions for SARS-CoV-2 proteins. PMID:33892639
Exploring the dermotoxicity of the mycotoxin deoxynivalenol: combined morphologic and proteomic profiling of human epidermal cells reveals alteration of lipid biosynthesis machinery and membrane structural integrity relevant for skin barrier function. PMID:33890134
Multi-omic analyses in Abyssinian cats with primary renal amyloid deposits. PMID:33863921
Dynamic Intracellular Metabolic Cell Signaling Profiles During Ag-Dependent B-Cell Differentiation. PMID:33859640
Factors affecting the rapid changes of protein under short-term heat stress. PMID:33849452
Proteomic response of Escherichia coli to a membrane lytic and iron chelating truncated Amaranthus tricolor defensin. PMID:33845758
Proteome constraints reveal targets for improving microbial fitness in nutrient-rich environments. PMID:33821549
Protein interactome of the Cancerous Inhibitor of protein phosphatase 2A (CIP2A) in Th17 cells. PMID:33817627
Blind normalization of public high-throughput databases. PMID:33816884
ADAM10-Mediated Ectodomain Shedding Is an Essential Driver of Podocyte Damage. PMID:33785583
Adaptation of Dinoroseobacter shibae to oxidative stress and the specific role of RirA. PMID:33780465
The chemical compound 'Heatin' stimulates hypocotyl elongation and interferes with the Arabidopsis NIT1-subfamily of nitrilases. PMID:33768644
Domain Mapping of Chondroitin/Dermatan Sulfate Glycosaminoglycans Enables Structural Characterization of Proteoglycans. PMID:33757834
Focal adhesion kinase inhibition synergizes with nab-paclitaxel to target pancreatic ductal adenocarcinoma. PMID:33750427
Alterations in the Global Proteome and Phosphoproteome in Third Generation EGFR TKI Resistance Reveal Drug Targets to Circumvent Resistance. PMID:33727228
Unbiased proteomic profiling of host cell extracellular vesicle composition and dynamics upon HIV-1 infection. PMID:33709510
Non-antibiotic pharmaceuticals promote the transmission of multidrug resistance plasmids through intra- and intergenera conjugation. PMID:33692486
Proteomic Adaptation of Clostridioides difficile to Treatment with the Antimicrobial Peptide Nisin. PMID:33670309
Integrated analysis of label-free quantitative proteomics and bioinformatics reveal insights into signaling pathways in male breast cancer. PMID:33656060
Recent Advanced Technologies for the Characterization of Xenobiotic-Degrading Microorganisms and Microbial Communities. PMID:33644024
In Well-Treated Celiac Patients Low-Level Mucosal Inflammation Predicts Response to 14-day Gluten Challenge. PMID:33643806
Proximity-dependent Mapping of the Androgen Receptor Identifies Kruppel-like Factor 4 as a Functional Partner. PMID:33640491
Penalized partial least squares for pleiotropy. PMID:33627076
Reprograming of sRNA target specificity by the leader peptide peTrpL in response to antibiotic exposure. PMID:33619526
The Role of Pseudo-Orthocaspase (SyOC) of Synechocystis sp. PCC 6803 in Attenuating the Effect of Oxidative Stress. PMID:33613507
Proteomic analyses identify major vault protein as a prognostic biomarker for fatal prostate cancer. PMID:33609362
mokapot: Fast and Flexible Semisupervised Learning for Peptide Detection. PMID:33596079
Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases. PMID:33589928
Arginine glycosylation enhances methylglyoxal detoxification. PMID:33589708
Myogenesis modelled by human pluripotent stem cells: a multi-omic study of Duchenne myopathy early onset. PMID:33586340
Proteomic Alterations in Multiple Myeloma: A Comprehensive Study Using Bone Marrow Interstitial Fluid and Serum Samples. PMID:33585190
Multiple Classes of Antimicrobial Peptides in Amaranthus tricolor Revealed by Prediction, Proteomics, and Mass Spectrometric Characterization. PMID:33576231
In silico identification of novel open reading frames in Plasmodium falciparum oocyte and salivary gland sporozoites using proteogenomics framework. PMID:33546698
Proteomic fingerprints of damage in extracellular matrix assemblies. PMID:33543016
Rab7-harboring vesicles are carriers of the transferrin receptor through the biosynthetic secretory pathway. PMID:33523982
Breath Biopsy and Discovery of Exclusive Volatile Organic Compounds for Diagnosis of Infectious Diseases. PMID:33520731
Replacing fish oil and astaxanthin by microalgal sources produced different metabolic responses in juvenile rainbow trout fed 2 types of practical diets. PMID:33515472
Acute environmental temperature variation affects brain protein expression, anxiety and explorative behaviour in adult zebrafish. PMID:33510219
A glycoengineered antigen exploiting a conserved protein O-glycosylation pathway in the Burkholderia genus for detection of glanders infections. PMID:33509023
An acetate-yielding diet imprints an immune and anti-microbial programme against enteric infection. PMID:33489123
Network Analysis Combining Proteomics and Metabolomics Reveals New Insights Into Early Responses of Eucalyptus grandis During Rust Infection. PMID:33488655
Potential biomarkers of childhood brain tumor identified by proteomics of cerebrospinal fluid from extraventricular drainage (EVD). PMID:33469081
Benchtop micro-mashing: high-throughput, robust, experimental beer brewing. PMID:33452289
Mitochondrial NAD+ Controls Nuclear ARTD1-Induced ADP-Ribosylation. PMID:33450210
Another layer of complexity in Staphylococcus aureus methionine biosynthesis control: unusual RNase III-driven T-box riboswitch cleavage determines met operon mRNA stability and decay. PMID:33450025
The role of small proteins in Burkholderia cenocepacia J2315 biofilm formation, persistence and intracellular growth. PMID:33447789
New Provisional Function of OmpA from Acinetobacter sp. Strain SA01 Based on Environmental Challenges. PMID:33436517
Dinoroseobacter shibae Outer Membrane Vesicles Are Enriched for the Chromosome Dimer Resolution Site dif. PMID:33436507
CSF SERPINA3 Levels Are Elevated in Patients With Progressive MS. PMID:33436375
Octenidine-based hydrogel shows anti-inflammatory and protease-inhibitory capacities in wounded human skin. PMID:33420112
Chromatin phosphoproteomics unravels a function for AT-hook motif nuclear localized protein AHL13 in PAMP-triggered immunity. PMID:33419940
ALK ligand ALKAL2 potentiates MYCN-driven neuroblastoma in the absence of ALK mutation. PMID:33411331
Proteomic analysis reveals ginsenoside Rb1 attenuates myocardial ischemia/reperfusion injury through inhibiting ROS production from mitochondrial complex I. PMID:33408776
Bacterial symbiont subpopulations have different roles in a deep-sea symbiosis. PMID:33404502
The KLF14 Variant is Associated with Type 2 Diabetes and HbA1C Level. PMID:33389382
New mixture models for decoy-free false discovery rate estimation in mass spectrometry proteomics. PMID:33381824
State of the Field in Multi-Omics Research: From Computational Needs to Data Mining and Sharing. PMID:33362867
Upregulation of polycistronic microRNA-143 and microRNA-145 in colonocytes suppresses colitis and inflammation-associated colon cancer. PMID:33356812
Biological characteristics of aging in human acute myeloid leukemia cells: the possible importance of aldehyde dehydrogenase, the cytoskeleton and altered transcriptional regulation. PMID:33349623
Preparing for Life: Plasma Proteome Changes and Immune System Development During the First Week of Human Life. PMID:33329546
Registered report protocol: Quantitative analysis of septin Cdc10-associated proteome in Cryptococcus neoformans. PMID:33315917
Dataset for proteomic analysis of Chlorella sorokiniana cells under cadmium stress. PMID:33294530
Proteomic Characterization of Synaptosomes from Human Substantia Nigra Indicates Altered Mitochondrial Translation in Parkinson's Disease. PMID:33276480
The Nucleosome Remodeling and Deacetylase Complex Has an Asymmetric, Dynamic, and Modular Architecture. PMID:33264611
diaPASEF: parallel accumulation-serial fragmentation combined with data-independent acquisition. PMID:33257825
Barley Root Proteome and Metabolome in Response to Cytokinin and Abiotic Stimuli. PMID:33250914
A primary human T-cell spectral library to facilitate large scale quantitative T-cell proteomics. PMID:33230158
Differential impact of BTK active site inhibitors on the conformational state of full-length BTK. PMID:33226337
Abundance of metalloprotease FtsH12 modulates chloroplast development in Arabidopsis thaliana. PMID:33216923
Analysis of complement deposition and processing on Chlamydia trachomatis. PMID:33206237
A comprehensive spectral assay library to quantify the Escherichia coli proteome by DIA/SWATH-MS. PMID:33184295
GlycoPOST realizes FAIR principles for glycomics mass spectrometry data. PMID:33174597
The interactome of multifunctional HAX1 protein suggests its role in the regulation of energy metabolism, de-aggregation, cytoskeleton organization and RNA-processing. PMID:33146709
Mild Acid Elution and MHC Immunoaffinity Chromatography Reveal Similar Albeit Not Identical Profiles of the HLA Class I Immunopeptidome. PMID:33141586
Molecular Surgery: Proteomics of a Rare Genetic Disease Gives Insight into Common Causes of Blindness. PMID:33134897
Characteristics of the Protein Complexes and Pores Formed by Bacillus cereus Hemolysin BL. PMID:33114414
Identification of Molecular Network Associated with Neuroprotective Effects of Yashtimadhu (Glycyrrhiza glabra L.) by Quantitative Proteomics of Rotenone-Induced Parkinson's Disease Model. PMID:33110989
Lost and Found: Re-searching and Re-scoring Proteomics Data Aids Genome Annotation and Improves Proteome Coverage. PMID:33109751
Pharmacodynamic modeling of synergistic birinapant/paclitaxel interactions in pancreatic cancer cells. PMID:33097020
Single-cell derived tumor organoids display diversity in HLA class I peptide presentation. PMID:33087703
Short-Chain Fatty Acids Modulate Metabolic Pathways and Membrane Lipids in Prevotella bryantii B14. PMID:33081314
Revealing mechanisms of mating plug function under sexual selection. PMID:33077605
DIALib-QC an assessment tool for spectral libraries in data-independent acquisition proteomics. PMID:33067471
Inclusion of African American/Black adults in a pilot brain proteomics study of Alzheimer's disease. PMID:33049317
Proteomic and transcriptomic profiling of aerial organ development in Arabidopsis. PMID:33037224
The reductive glycine pathway allows autotrophic growth of Desulfovibrio desulfuricans. PMID:33037220
Abscisic Acid-Triggered Persulfidation of the Cys Protease ATG4 Mediates Regulation of Autophagy by Sulfide. PMID:33037147
A Multi-Omics Approach Identifies Key Regulatory Pathways Induced by Long-Term Zinc Supplementation in Human Primary Retinal Pigment Epithelium. PMID:33036197
Protective effect of Vigna unguiculata extract against aging and neurodegeneration. PMID:33024055
Optimized incorporation of an unnatural fluorescent amino acid affords measurement of conformational dynamics governing high-fidelity DNA replication. PMID:33020184
Extracellular vesicles in patients in the acute phase of psychosis and after clinical improvement: an explorative study. PMID:32995075
Re-establishment of the epigenetic state and rescue of kinome deregulation in Ts65Dn mice upon treatment with green tea extract and environmental enrichment. PMID:32994493
Pharmacological and phosphoproteomic approaches to roles of protein kinase C in kappa opioid receptor-mediated effects in mice. PMID:32976891
Xylose Metabolism and the Effect of Oxidative Stress on Lipid and Carotenoid Production in Rhodotorula toruloides: Insights for Future Biorefinery. PMID:32974324
Development of robust targeted proteomics assays for cerebrospinal fluid biomarkers in multiple sclerosis. PMID:32963504
Proteomic Characterization of Host-Pathogen Interactions during Bovine Trophoblast Cell Line Infection by Neospora caninum. PMID:32942559
Systematic genetic and proteomic screens during gametogenesis identify H2BK34 methylation as an evolutionary conserved meiotic mark. PMID:32933557
Intermittent Hypoxia Promotes Functional Neuroprotection from Retinal Ischemia in Untreated First-Generation Offspring: Proteomic Mechanistic Insights. PMID:32910134
Plasma proteins facilitates placental transfer of polystyrene particles. PMID:32907583
Cofilin-1 Is a Mechanosensitive Regulator of Transcription. PMID:32903827
High-Resolution Mass Spectrometry-Based Approaches for the Detection and Quantification of Peptidase Activity in Plasma. PMID:32899982
Mitochondrial CaMKII causes adverse metabolic reprogramming and dilated cardiomyopathy. PMID:32887881
Myocardial proteomic profile in pulmonary arterial hypertension. PMID:32873862
Akkermansia muciniphila uses human milk oligosaccharides to thrive in the early life conditions in vitro. PMID:32868839
Receptor-independent modulation of cAMP-dependent protein kinase and protein phosphatase signaling in cardiac myocytes by oxidizing agents. PMID:32868295
Immiscible inclusion bodies formed by polyglutamine and poly(glycine-alanine) are enriched with distinct proteomes but converge in proteins that are risk factors for disease and involved in protein degradation. PMID:32857759
Molecular abnormalities in autopsied brain tissue from the inferior horn of the lateral ventricles of nonagenarians and Alzheimer disease patients. PMID:32854643
Proteomic Analysis Reveals a Mitochondrial Remodeling of βTC3 Cells in Response to Nanotopography. PMID:32850772
Lipoproteins Contribute to the Anti-inflammatory Capacity of Lactobacillus plantarum WCFS1. PMID:32849426
ITGB3-mediated uptake of small extracellular vesicles facilitates intercellular communication in breast cancer cells. PMID:32848136
Collapsin Response Mediator Proteins: Novel Targets for Alzheimer's Disease. PMID:32804096
Reciprocal regulation of Aurora kinase A and ATIP3 in the control of metaphase spindle length. PMID:32789689
Mass-Spectrometric Detection of SARS-CoV-2 Virus in Scrapings of the Epithelium of the Nasopharynx of Infected Patients via Nucleocapsid N Protein. PMID:32786682
Impaired chondrocyte U3 snoRNA expression in osteoarthritis impacts the chondrocyte protein translation apparatus. PMID:32778764
A membrane-depolarizing toxin substrate of the Staphylococcus aureus type VII secretion system mediates intraspecies competition. PMID:32769205
Peptide-based quorum sensing systems in Paenibacillus polymyxa. PMID:32764104
Identification of Tomato Proteins That Interact With Replication Initiator Protein (Rep) of the Geminivirus TYLCV. PMID:32760417
Rescue of oxytocin response and social behaviour in a mouse model of autism. PMID:32760004
The Regulator PltZ Regulates a Putative ABC Transporter System PltIJKNOP of Pseudomonas aeruginosa ATCC 27853 in Response to the Antimicrobial 2,4-Diacetylphloroglucinol. PMID:32733400
Cellular response of Brevibacterium casei #NIOSBA88 to arsenic and chromium-a proteomic approach. PMID:32729030
Papain-like protease regulates SARS-CoV-2 viral spread and innate immunity. PMID:32726803
Proteomic Study of the Survival and Resuscitation Mechanisms of Filamentous Persisters in an Evolved Escherichia coli Population from Cyclic Ampicillin Treatment. PMID:32723793
Discovery of treatment for nerve agents targeting a new metabolic pathway. PMID:32720192
Structural and functional studies of Arabidopsis thaliana legumain beta reveal isoform specific mechanisms of activation and substrate recognition. PMID:32719006
The Cyclin CYCA3;4 Is a Postprophase Target of the APC/CCCS52A2 E3-Ligase Controlling Formative Cell Divisions in Arabidopsis. PMID:32690720
Human cytomegalovirus protein pUL36: A dual cell death pathway inhibitor. PMID:32690704
Proteome activity landscapes of tumor cell lines determine drug responses. PMID:32686665
Na2CO3-responsive Photosynthetic and ROS Scavenging Mechanisms in Chloroplasts of Alkaligrass Revealed by Phosphoproteomics. PMID:32683046
Large-scale site-specific mapping of the O-GalNAc glycoproteome. PMID:32681153
Streptococcus pneumoniae metal homeostasis alters cellular metabolism. PMID:32676626
Intersection of TKS5 and FGD1/CDC42 signaling cascades directs the formation of invadopodia. PMID:32673397
Co-option of Plasmodium falciparum PP1 for egress from host erythrocytes. PMID:32669539
SNAIL Promotes Metastatic Behavior of Rhabdomyosarcoma by Increasing EZRIN and AKT Expression and Regulating MicroRNA Networks. PMID:32664538
Peroxiredoxin promotes longevity and H2O2-resistance in yeast through redox-modulation of protein kinase A. PMID:32662770
Radiosensitization by Kinase Inhibition Revealed by Phosphoproteomic Analysis of Pancreatic Cancer Cells. PMID:32651227
Comprehensive proteomics data on whole rice grain of selected pigmented and non-pigmented rice varieties using SWATH-MS approach. PMID:32642524
Calcium-binding proteins are altered in the cerebellum in schizophrenia. PMID:32639965
Microdissected pancreatic cancer proteomes reveal tumor heterogeneity and therapeutic targets. PMID:32634123
Fast Quantitative Analysis of timsTOF PASEF Data with MSFragger and IonQuant. PMID:32616513
Seed Metabolism and Pathogen Resistance Enhancement in Pisum sativum During Colonization of Arbuscular Mycorrhizal Fungi: An Integrative Metabolomics-Proteomics Approach. PMID:32612631
FYN and ABL Regulate the Interaction Networks of the DCBLD Receptor Family. PMID:32606017
Chromokinesin KIF4A teams up with stathmin 1 to regulate abscission in a SUMO-dependent manner. PMID:32591481
Absence of miRNA-146a Differentially Alters Microglia Function and Proteome. PMID:32582192
In-Depth Investigation of Low-Abundance Proteins in Matured and Filling Stages Seeds of Glycine max Employing a Combination of Protamine Sulfate Precipitation and TMT-Based Quantitative Proteomic Analysis. PMID:32580392
ZapE/Afg1 interacts with Oxa1 and its depletion causes a multifaceted phenotype. PMID:32579605
Open Database Searching Enables the Identification and Comparison of Bacterial Glycoproteomes without Defining Glycan Compositions Prior to Searching. PMID:32576591
Interactome analysis reveals that lncRNA HULC promotes aerobic glycolysis through LDHA and PKM2. PMID:32572027
Reduced proteasome activity in the aging brain results in ribosome stoichiometry loss and aggregation. PMID:32558274
The Leader Peptide peTrpL Forms Antibiotic-Containing Ribonucleoprotein Complexes for Posttranscriptional Regulation of Multiresistance Genes. PMID:32546623
Dynamic rewiring of the human interactome by interferon signaling. PMID:32539747
Orthogonal Proteomic Platforms and Their Implications for the Stable Classification of High-Grade Serous Ovarian Cancer Subtypes. PMID:32534439
Mass Spectrometric Mapping of Glycoproteins Modified by Tn-Antigen Using Solid-Phase Capture and Enzymatic Release. PMID:32510927
Engineered anti-inflammatory peptides inspired by mapping an evasin-chemokine interaction. PMID:32471866
Ubiquitome analysis reveals the involvement of lysine ubiquitination in the spermatogenesis process of adult buffalo (Bubalus bubalis) testis. PMID:32469046
High-throughput transcriptomic and proteomic profiling of mesenchymal-amoeboid transition in 3D collagen. PMID:32461585
Plasma protein expression differs between colorectal cancer patients depending on primary tumor location. PMID:32452655
Proteomic datasets of uninfected and Staphylococcus aureus-infected goat milk. PMID:32426435
Non-antibiotic pharmaceuticals enhance the transmission of exogenous antibiotic resistance genes through bacterial transformation. PMID:32424247
Natural brominated phenoxyphenols kill persistent and biofilm-incorporated cells of MRSA and other pathogenic bacteria. PMID:32418125
Development of a novel method for the quantification of tyrosine 39 phosphorylated α- and β-synuclein in human cerebrospinal fluid. PMID:32390785
Label-free plasma proteomics identifies haptoglobin-related protein as candidate marker of idiopathic pulmonary fibrosis and dysregulation of complement and oxidative pathways. PMID:32385381
OPTN recruitment to a Golgi-proximal compartment regulates immune signalling and cytokine secretion. PMID:32376785
Saliva proteomic patterns in patients with molar incisor hypomineralization. PMID:32371984
Immunopeptidomic Analysis Reveals That Deamidated HLA-bound Peptides Arise Predominantly from Deglycosylated Precursors. PMID:32357974
Glycomics and glycoproteomics of viruses: Mass spectrometry applications and insights toward structure-function relationships. PMID:32350911
The Cellular Response to Lanthanum Is Substrate Specific and Reveals a Novel Route for Glycerol Metabolism in Pseudomonas putida KT2440. PMID:32345644
Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. PMID:32344669
Longitudinal Transcriptomic, Proteomic, and Metabolomic Analysis of Citrus limon Response to Graft Inoculation by Candidatus Liberibacter asiaticus. PMID:32338516
Conditional deletion of Nedd4-2 in lung epithelial cells causes progressive pulmonary fibrosis in adult mice. PMID:32332792
Reactive oxygen species triggers unconventional secretion of antioxidants and Acb1. PMID:32328640
α2,3 linkage of sialic acid to a GPI anchor and an unpredicted GPI attachment site in human prion protein. PMID:32321762
miR-181a regulates p62/SQSTM1, parkin, and protein DJ-1 promoting mitochondrial dynamics in skeletal muscle aging. PMID:32291905
Human Neutrophils Produce Antifungal Extracellular Vesicles against Aspergillus fumigatus. PMID:32291301
Quantitative Proteomics of Human Heart Samples Collected In Vivo Reveal the Remodeled Protein Landscape of Dilated Left Atrium Without Atrial Fibrillation. PMID:32291283
A comprehensive analysis of sialolith proteins and the clinical implications. PMID:32265614
Adaptive Evolution of Geobacter sulfurreducens in Coculture with Pseudomonas aeruginosa. PMID:32265334
Temporal Dynamics of High-Density Lipoprotein Proteome in Diet-Controlled Subjects with Type 2 Diabetes. PMID:32235466
Relative Retention Time Estimation Improves N-Glycopeptide Identifications by LC-MS/MS. PMID:32223173
The rRNA m6A methyltransferase METTL5 is involved in pluripotency and developmental programs. PMID:32217665
Synonymous Mutations in rpsT Lead to Ribosomal Assembly Defects That Can Be Compensated by Mutations in fis and rpoA. PMID:32210939
β-Catenin/CBP inhibition alters epidermal growth factor receptor fucosylation status in oral squamous cell carcinoma. PMID:32203567
Systems analysis of RhoGEF and RhoGAP regulatory proteins reveals spatially organized RAC1 signalling from integrin adhesions. PMID:32203420
An array of 60,000 antibodies for proteome-scale antibody generation and target discovery. PMID:32195335
Proteome and Phosphoproteome Changes Associated with Prognosis in Acute Myeloid Leukemia. PMID:32192169
CIP2A Constrains Th17 Differentiation by Modulating STAT3 Signaling. PMID:32171124
Multifunctional Acidocin 4356 Combats Pseudomonas aeruginosa through Membrane Perturbation and Virulence Attenuation: Experimental Results Confirm Molecular Dynamics Simulation. PMID:32169940
Comprehensive cell surface proteomics defines markers of classical, intermediate and non-classical monocytes. PMID:32165698
Proteomic analysis of somatic embryo development in Musa spp. cv. Grand Naine (AAA). PMID:32161309
Mitochondrial peptide BRAWNIN is essential for vertebrate respiratory complex III assembly. PMID:32161263
A Uniquely Complex Mitochondrial Proteome from Euglena gracilis. PMID:32159766
Evidence for a novel overlapping coding sequence in POLG initiated at a CUG start codon. PMID:32138667
Quantitative Profiling of the Human Substantia Nigra Proteome from Laser-capture Microdissected FFPE Tissue. PMID:32132230
Mutagenesis of a Quintuple Mutant Impaired in Environmental Responses Reveals Roles for CHROMATIN REMODELING4 in the Arabidopsis Floral Transition. PMID:32132131
Proteome profile of peripheral myelin in healthy mice and in a neuropathy model. PMID:32130108
Cyclosporine A inhibits MRTF-SRF signaling through Na+/K+ ATPase inhibition and actin remodeling. PMID:32123851
Identification of several plasma proteins whose levels in colorectal cancer patients differ depending on outcome. PMID:32123817
Human Hepatocyte Nuclear Factor 4-α Encodes Isoforms with Distinct Transcriptional Functions. PMID:32123031
Proteomic Investigation Uncovers Potential Targets and Target Sites of Pneumococcal Serine-Threonine Kinase StkP and Phosphatase PhpP. PMID:32117081
Extending Comet for Global Amino Acid Variant and Post-Translational Modification Analysis Using the PSI Extended FASTA Format. PMID:32106352
Glycosaminoglycan Domain Mapping of Cellular Chondroitin/Dermatan Sulfates. PMID:32103093
Large-scale Identification of N-linked Intact Glycopeptides in Human Serum using HILIC Enrichment and Spectral Library Search. PMID:32102970
SPD_1495 Contributes to Capsular Polysaccharide Synthesis and Virulence in Streptococcus pneumoniae. PMID:32098834
β2-Adrenergic Signalling Promotes Cell Migration by Upregulating Expression of the Metastasis-Associated Molecule LYPD3. PMID:32098331
Interactome and F-Actin Interaction Analysis of Dictyostelium discoideum Coronin A. PMID:32098122
Phosphoinositide-binding proteins mark, shape and functionally modulate highly-diverged endocytic compartments in the parasitic protist Giardia lamblia. PMID:32092130
Arginine in C9ORF72 Dipolypeptides Mediates Promiscuous Proteome Binding and Multiple Modes of Toxicity. PMID:32086375
Changes in the proteome of sea urchin Paracentrotus lividus coelomocytes in response to LPS injection into the body cavity. PMID:32074628
Dataset on proteomic changes of whey protein after different heat treatment. PMID:32071994
Structural insights into the main S-layer unit of Deinococcus radiodurans reveal a massive protein complex with porin-like features. PMID:32071085
Comprehensive Detection of Single Amino Acid Variants and Evaluation of Their Deleterious Potential in a PANC-1 Cell Line. PMID:32058723
Erythrocyte-derived microvesicles induce arterial spasms in JAK2V617F myeloproliferative neoplasm. PMID:32045382
Active nuclear import of the deacetylase Sirtuin-2 is controlled by its C-terminus and importins. PMID:32042025
Precise timing of transcription by c-di-GMP coordinates cell cycle and morphogenesis in Caulobacter. PMID:32041947
Blood Contamination in CSF and Its Impact on Quantitative Analysis of Alpha-Synuclein. PMID:32033488
Phenotypic Adaption of Pseudomonas aeruginosa by Hacking Siderophores Produced by Other Microorganisms. PMID:32024770
Environmental Viscosity Modulates Interbacterial Killing during Habitat Transition. PMID:32019799
Small-RNA-mediated transgenerational silencing of histone genes impairs fertility in piRNA mutants. PMID:32015436
TRAM1 protein may support ER protein import by modulating the phospholipid bilayer near the lateral gate of the Sec61-channel. PMID:32013668
Proteome Analyses Reveal Macrophomina phaseolina's Survival Tools When Challenged by Burkholderia contaminans NZ. PMID:32010805
A Novel D-Galacturonate Fermentation Pathway in Lactobacillus suebicus Links Initial Reactions of the Galacturonate-Isomerase Route With the Phosphoketolase Pathway. PMID:32010092
Machine Learning Strategy That Leverages Large Data sets to Boost Statistical Power in Small-Scale Experiments. PMID:32009418
Community-intrinsic properties enhance keratin degradation from bacterial consortia. PMID:32004342
ADAPT identifies an ESCRT complex composition that discriminates VCaP from LNCaP prostate cancer cell exosomes. PMID:31989173
Unravelling the role of long non-coding RNA - LINC01087 in breast cancer. PMID:31989062
Cooperation of the NEIL3 and Fanconi anemia/BRCA pathways in interstrand crosslink repair. PMID:31980815
Thermotolerance and plasticity of camel somatic cells exposed to acute and chronic heat stress. PMID:31969994
Biotin proximity tagging favours unfolded proteins and enables the study of intrinsically disordered regions. PMID:31969649
Reconstructing kinase network topologies from phosphoproteomics data reveals cancer-associated rewiring. PMID:31959955
The most abundant maternal lncRNA Sirena1 acts post-transcriptionally and impacts mitochondrial distribution. PMID:31956907
ExteNDing Proteome Coverage with Legumain as a Highly Specific Digestion Protease. PMID:31951383
Proteomic Responses to Drought Vary Widely Among Eight Diverse Genotypes of Rice (Oryza sativa). PMID:31935846
The phosphatase PAC1 acts as a T cell suppressor and attenuates host antitumor immunity. PMID:31932812
N-glycosylation Site Analysis Reveals Sex-related Differences in Protein N-glycosylation in the Rice Brown Planthopper (Nilaparvata lugens). PMID:31924694
A subcellular proteome atlas of the yeast Komagataella phaffii. PMID:31922548
Using Omics Technologies and Systems Biology to Identify Epitope Targets for the Development of Monoclonal Antibodies Against Antibiotic-Resistant Bacteria. PMID:31921119
Unbalanced Roles of Fungal Aggressiveness and Host Cultivars in the Establishment of the Fusarium Head Blight in Bread Wheat. PMID:31921038
RP-HPLC-ESI-IT Mass Spectrometry Reveals Significant Variations of the Human Salivary Protein Profile Associated with Predominantly Antibody Deficiencies. PMID:31916122
Norovirus infection results in eIF2α independent host translation shut-off and remodels the G3BP1 interactome evading stress granule formation. PMID:31905230
Comparison of the molecular and cellular phenotypes of common mouse syngeneic models with human tumors. PMID:31898484
Characterizing Patients with Recurrent Urinary Tract Infections in Vesicoureteral Reflux: A Pilot Study of the Urinary Proteome. PMID:31896675
Integrative genomics reveal a role for MCPIP1 in adipogenesis and adipocyte metabolism. PMID:31893310
The Arabidopsis thaliana N-recognin E3 ligase PROTEOLYSIS1 influences the immune response. PMID:31891113
Sweet google O' mine-The importance of online search engines for MS-facilitated, database-independent identification of peptide-encoded book prefaces: A EUPA YPIC challenge entry. PMID:31890548
Combining Precursor and Fragment Information for Improved Detection of Differential Abundance in Data Independent Acquisition. PMID:31888964
Candida utilis yeast as a functional protein source for Atlantic salmon (Salmo salar L.): Local intestinal tissue and plasma proteome responses. PMID:31887112
Few SINEs of life: Alu elements have little evidence for biological relevance despite elevated translation. PMID:31886458
Colonies of the fungus Aspergillus niger are highly differentiated to adapt to local carbon source variation. PMID:31876091
Human cytomegalovirus interactome analysis identifies degradation hubs, domain associations and viral protein functions. PMID:31873071
Structure Dependent Determination of Organophosphate Targets in Mammalian Tissues Using Activity-Based Protein Profiling. PMID:31872761
Characterization of a human liver reference material fit for proteomics applications. PMID:31852895
Network Analyses and Data Integration of Proteomics and Metabolomics From Leaves of Two Contrasting Varieties of Sugarcane in Response to Drought. PMID:31850025
TcellSubC: An Atlas of the Subcellular Proteome of Human T Cells. PMID:31849937
Host-Microbe Interactions in the Chemosynthetic Riftia pachyptila Symbiosis. PMID:31848270
High-density chemical cross-linking for modeling protein interactions. PMID:31848235
Discovery of increased epidermal DNAH10 expression after regeneration of dermis in a randomized with-in person trial - reflections on psoriatic inflammation. PMID:31836722
Transcriptomic and Proteomic Responses of the Organohalide-Respiring Bacterium Desulfoluna spongiiphila to Growth with 2,6-Dibromophenol as the Electron Acceptor. PMID:31836581
Composition and processing activity of a semi-recombinant holo U7 snRNP. PMID:31819999
The functional landscape of the human phosphoproteome. PMID:31819260
Bisphenol A Activates an Innate Viral Immune Response Pathway. PMID:31816243
Accessible and reproducible mass spectrometry imaging data analysis in Galaxy. PMID:31816088
Disruption of Acetyl-Lysine Turnover in Muscle Mitochondria Promotes Insulin Resistance and Redox Stress without Overt Respiratory Dysfunction. PMID:31813822
DYRK1A Overexpression Alters Cognition and Neural-Related Proteomic Pathways in the Hippocampus That Are Rescued by Green Tea Extract and/or Environmental Enrichment. PMID:31803016
Growth phase proteomics of the heterotrophic marine bacterium Ruegeria pomeroyi. PMID:31796751
The adaptive response to iron involves changes in energetic strategies in the pathogen Candida albicans. PMID:31788966
Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures. PMID:31780431
An omics perspective on drug target discovery platforms. PMID:31774113
Thromboinflammatory changes in plasma proteome of pregnant women with PCOS detected by quantitative label-free proteomics. PMID:31772271
Salivary Protein Panel to Diagnose Systolic Heart Failure. PMID:31766659
A mass spectrometry guided approach for the identification of novel vaccine candidates in gram-negative pathogens. PMID:31758014
Comparative proteome and metabolome analyses of latex-exuding and non-exuding Taraxacum koksaghyz roots provide insights into laticifer biology. PMID:31740929
BMP signaling inhibition in Drosophila secondary cells remodels the seminal proteome and self and rival ejaculate functions. PMID:31740617
Lineage-Restricted Regulation of SCD and Fatty Acid Saturation by MITF Controls Melanoma Phenotypic Plasticity. PMID:31733993
Loss of O-Linked Protein Glycosylation in Burkholderia cenocepacia Impairs Biofilm Formation and Siderophore Activity and Alters Transcriptional Regulators. PMID:31722994
Transcription-coupled nucleotide excision repair is coordinated by ubiquitin and SUMO in response to ultraviolet irradiation. PMID:31722399
Proteomic analysis of eleven tissues in the Chinese giant salamander (Andrias davidianus). PMID:31712686
Impact of Na+-Translocating NADH:Quinone Oxidoreductase on Iron Uptake and nqrM Expression in Vibrio cholerae. PMID:31712283
Effects of Simulated Space Radiations on the Tomato Root Proteome. PMID:31708949
Quantitative Proteomics Reveal Peroxiredoxin Perturbation Upon Persistent Lymphocytic Choriomeningitis Virus Infection in Human Cells. PMID:31708904
Proteome Profiling of Cerebral Vessels in Rhesus Macaques: Dysregulation of Antioxidant Activity and Extracellular Matrix Proteins Contributes to Cerebrovascular Aging in Rhesus Macaques. PMID:31708766
Trans-Synaptic Signaling through the Glutamate Receptor Delta-1 Mediates Inhibitory Synapse Formation in Cortical Pyramidal Neurons. PMID:31704028
Reproducibility, Specificity and Accuracy of Relative Quantification Using Spectral Library-based Data-independent Acquisition. PMID:31699904
Co-regulation map of the human proteome enables identification of protein functions. PMID:31690884
Dissecting the Shared and Context-Dependent Pathways Mediated by the p140Cap Adaptor Protein in Cancer and in Neurons. PMID:31681758
Proteomic changes in the milk of water buffaloes (Bubalus bubalis) with subclinical mastitis due to intramammary infection by Staphylococcus aureus and by non-aureus staphylococci. PMID:31676851
Dataset of Nematostella vectensis Hsp70 isoform interactomes upon heat shock. PMID:31673583
Ageing and amyloidosis underlie the molecular and pathological alterations of tau in a mouse model of familial Alzheimer's disease. PMID:31673052
Class I HDAC inhibitors enhance YB-1 acetylation and oxidative stress to block sarcoma metastasis. PMID:31668005
The olfactory secretome varies according to season in female sheep and goat. PMID:31666027
Molecular Diversification of the Seminal Fluid Proteome in a Recently Diverged Passerine Species Pair. PMID:31665510
Phosphoproteomics reveals that the hVPS34 regulated SGK3 kinase specifically phosphorylates endosomal proteins including Syntaxin-7, Syntaxin-12, RFIP4 and WDR44. PMID:31665227
Biological plasticity rescues target activity in CRISPR knock outs. PMID:31659326
Brain Region-Specific nAChR and Associated Protein Abundance Alterations Following Chronic Nicotine and/or Menthol Exposure. PMID:31657575
The Interactome analysis of the Respiratory Syncytial Virus protein M2-1 suggests a new role in viral mRNA metabolism post-transcription. PMID:31649314
Glycogen Metabolism Supports Photosynthesis Start through the Oxidative Pentose Phosphate Pathway in Cyanobacteria. PMID:31649110
HAX1 impact on collective cell migration, cell adhesion, and cell shape is linked to the regulation of actomyosin contractility. PMID:31644363
Robust prediction of HLA class II epitopes by deep motif deconvolution of immunopeptidomes. PMID:31611696
Meningeal γδ T cell-derived IL-17 controls synaptic plasticity and short-term memory. PMID:31604844
Genomic, transcriptomic, and proteomic insights into the symbiosis of deep-sea tubeworm holobionts. PMID:31595051
A small molecule interacts with VDAC2 to block mouse BAK-driven apoptosis. PMID:31591564
Functional Genomics of the Retina to Elucidate its Construction and Deconstruction. PMID:31590277
Changes in the microsomal proteome of tomato fruit during ripening. PMID:31586085
Glucose-Mediated Repression of Plant Biomass Utilization in the White-Rot Fungus Dichomitus squalens. PMID:31585998
A homology-guided, genome-based proteome for improved proteomics in the alloploid Nicotiana benthamiana. PMID:31585525
The ubiquitin-like modifier FAT10 interferes with SUMO activation. PMID:31575873
Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria). PMID:31562384
SWATH-based proteomics reveals processes associated with immune evasion and metastasis in poor prognosis colorectal tumours. PMID:31560832
Overexpression of HMG-CoA synthase promotes Arabidopsis root growth and adversely affects glucosinolate biosynthesis. PMID:31557302
PepSAVI-MS Reveals a Proline-rich Antimicrobial Peptide in Amaranthus tricolor. PMID:31557021
Mice depleted for Exchange Proteins Directly Activated by cAMP (Epac) exhibit irregular liver regeneration in response to partial hepatectomy. PMID:31551444
The Core Proteome of Biofilm-Grown Clinical Pseudomonas aeruginosa Isolates. PMID:31547513
Proteome Profiling of the Exhaled Breath Condensate after Long-Term Spaceflights. PMID:31547269
Sample Preservation and Storage Significantly Impact Taxonomic and Functional Profiles in Metaproteomics Studies of the Human Gut Microbiome. PMID:31546776
Metallopeptidase inhibitor 1 (TIMP-1) promotes receptor tyrosine kinase c-Kit signaling in colorectal cancer. PMID:31545548
STK38 kinase acts as XPO1 gatekeeper regulating the nuclear export of autophagy proteins and other cargoes. PMID:31544310
Mass spectrometric identification of candidate RNA-binding proteins associated with Transition Nuclear Protein mRNA in the mouse testis. PMID:31541158
Regulation of the endosomal SNX27-retromer by OTULIN. PMID:31541095
Cysteine oxidation triggers amyloid fibril formation of the tumor suppressor p16INK4A. PMID:31539802
A shared core microbiome in soda lakes separated by large distances. PMID:31530813
Liver proteome dataset of Sparus aurata exposed to low temperatures. PMID:31528672
Ligand-dependent spatiotemporal signaling profiles of the μ-opioid receptor are controlled by distinct protein-interaction networks. PMID:31515267
Reticulocyte and red blood cell deformation triggers specific phosphorylation events. PMID:31506283
HDL flux is higher in patients with nonalcoholic fatty liver disease. PMID:31503515
Cell-type-specific profiling of brain mitochondria reveals functional and molecular diversity. PMID:31501572
Palaeoproteomic identification of breast milk protein residues from the archaeological skeletal remains of a neonatal dog. PMID:31492911
Predictive modeling of therapeutic response to chondroitin sulfate/glucosamine hydrochloride in knee osteoarthritis. PMID:31489155
Maintenance of spatial gene expression by Polycomb-mediated repression after formation of a vertebrate body plan. PMID:31488564
Polyubiquitin Chains Linked by Lysine Residue 48 (K48) Selectively Target Oxidized Proteins In Vivo. PMID:31482721
Sensitive Determination of Proteolytic Proteoforms in Limited Microscale Proteome Samples. PMID:31471496
A dataset describing a suite of novel antibody reagents for the RAS signaling network. PMID:31467290
A human endogenous retrovirus encoded protease potentially cleaves numerous cellular proteins. PMID:31462935
Exploring the effects of operational mode and microbial interactions on bacterial community assembly in a one-stage partial-nitritation anammox reactor using integrated multi-omics. PMID:31462278
Extremely Fast and Accurate Open Modification Spectral Library Searching of High-Resolution Mass Spectra Using Feature Hashing and Graphics Processing Units. PMID:31448616
Customizing Functionalized Cofactor Mimics to Study the Human Pyridoxal 5'-Phosphate-Binding Proteome. PMID:31447350
Limited Oxidative Stress Favors Resistance to Skeletal Muscle Atrophy in Hibernating Brown Bears (Ursus Arctos). PMID:31443506
A de novo evolved gene in the house mouse regulates female pregnancy cycles. PMID:31436535
Taxonomic and functional characterization of a microbial community from a volcanic englacial ecosystem in Deception Island, Antarctica. PMID:31434915
Strong anion exchange-mediated phosphoproteomics reveals extensive human non-canonical phosphorylation. PMID:31433507
Divergent allocation of sperm and the seminal proteome along a competition gradient in Drosophila melanogaster. PMID:31431535
Protein replenishment in pitcher fluids of Nepenthes × ventrata revealed by quantitative proteomics (SWATH-MS) informed by transcriptomics. PMID:31422552
Interplay between the bacterial protein deacetylase CobB and the second messenger c-di-GMP. PMID:31418899
Phellem Cell-Wall Components Are Discriminants of Cork Quality in Quercus suber. PMID:31417580
Fecal Metaproteomic Analysis Reveals Unique Changes of the Gut Microbiome Functions After Consumption of Sourdough Carasau Bread. PMID:31417524
Proteomics and post-secretory content adjustment of Nicotiana tabacum nectar. PMID:31414205
Phosphoproteomic analysis reveals plant DNA damage signalling pathways with a functional role for histone H2AX phosphorylation in plant growth under genotoxic stress. PMID:31410901
Therapeutic Targeting of RNA Splicing Catalysis through Inhibition of Protein Arginine Methylation. PMID:31408619
A Novel Pyrazolopyrimidine Ligand of Human PGK1 and Stress Sensor DJ1 Modulates the Shelterin Complex and Telomere Length Regulation. PMID:31401411
Parallel Evolution of Complex Centipede Venoms Revealed by Comparative Proteotranscriptomic Analyses. PMID:31396628
The nascent RNA binding complex SFiNX licenses piRNA-guided heterochromatin formation. PMID:31384064
Multi-omics Analyses Reveal Synergistic Carbohydrate Metabolism in Streptococcus mutans-Candida albicans Mixed-Species Biofilms. PMID:31383746
An Insight into the Proteome of Uveal Melanoma-Derived Ectosomes Reveals the Presence of Potentially Useful Biomarkers. PMID:31382537
Quantitative phosphoproteome and proteome analyses emphasize the influence of phosphorylation events during the nutritional stress of Trypanosoma cruzi: the initial moments of in vitro metacyclogenesis. PMID:31368045
PathwayMatcher: proteoform-centric network construction enables fine-granularity multiomics pathway mapping. PMID:31363752
Defining Protein Pattern Differences Among Molecular Subtypes of Diffuse Gliomas Using Mass Spectrometry. PMID:31353322
Comparative proteomics analysis reveals the difference during antler regeneration stage between red deer and sika deer. PMID:31346498
Kinome profiling of non-Hodgkin lymphoma identifies Tyro3 as a therapeutic target in primary effusion lymphoma. PMID:31346082
Interactome of Glyceraldehyde-3-Phosphate Dehydrogenase Points to the Existence of Metabolons in Paracoccidioides lutzii. PMID:31338083
Charge-Mediated Pyrin Oligomerization Nucleates Antiviral IFI16 Sensing of Herpesvirus DNA. PMID:31337724
Flower bud proteome reveals modulation of sex-biased proteins potentially associated with sex expression and modification in dioecious Coccinia grandis. PMID:31337343
Proteomic Data Integration Highlights Central Actors Involved in Einkorn (Triticum monococcum ssp. monococcum) Grain Filling in Relation to Grain Storage Protein Composition. PMID:31333693
PARK2 Mutation Causes Metabolic Disturbances and Impaired Survival of Human iPSC-Derived Neurons. PMID:31333417
Towards a standardized bioinformatics infrastructure for N- and O-glycomics. PMID:31332201
Multibatch TMT Reveals False Positives, Batch Effects and Missing Values. PMID:31332098
A Systems-level Characterization of the Differentiation of Human Embryonic Stem Cells into Mesenchymal Stem Cells. PMID:31332097
N-terminal β-strand underpins biochemical specialization of an ATG8 isoform. PMID:31329577
Chronic shisha exposure alters phosphoproteome of oral keratinocytes. PMID:31321732
Modulation of posterior intestinal mucosal proteome in rainbow trout (Oncorhynchus mykiss) after Yersinia ruckeri infection. PMID:31315687
Bayesian Confidence Intervals for Multiplexed Proteomics Integrate Ion-statistics with Peptide Quantification Concordance. PMID:31311848
A Chemical Proteomic Analysis of Illudin-Interacting Proteins. PMID:31310394
Oxygen-dependent bond formation with FIH regulates the activity of the client protein OTUB1. PMID:31299612
Lamin A molecular compression and sliding as mechanisms behind nucleoskeleton elasticity. PMID:31296869
High-throughput mass spectrometry and bioinformatics analysis of breast cancer proteomic data. PMID:31294064
PTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline. PMID:31290668
Multiple C2 domains and transmembrane region proteins (MCTPs) tether membranes at plasmodesmata. PMID:31286648
Inhibiting ubiquitination causes an accumulation of SUMOylated newly synthesized nuclear proteins at PML bodies. PMID:31285264
The Farmed Atlantic Salmon (Salmo salar) Skin-Mucus Proteome and Its Nutrient Potential for the Resident Bacterial Community. PMID:31284681
Neutrophil extracellular traps (NET) induced by different stimuli: A comparative proteomic analysis. PMID:31283757
Genome-wide functional association networks: background, data & state-of-the-art resources. PMID:31281921
Analysis of the Escherichia coli extracellular vesicle proteome identifies markers of purity and culture conditions. PMID:31275533
Identification of Hanks-Type Kinase PknB-Specific Targets in the Streptococcus thermophilus Phosphoproteome. PMID:31275266
Quantitative Photo-crosslinking Mass Spectrometry Revealing Protein Structure Response to Environmental Changes. PMID:31274288
Evolutionary Proteomics Reveals Distinct Patterns of Complexity and Divergence between Lepidopteran Sperm Morphs. PMID:31268533
Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. PMID:31266899
The Effects of Spaceflight Factors on the Human Plasma Proteome, Including Both Real Space Missions and Ground-Based Experiments. PMID:31261866
Divergent Polypharmacology-Driven Cellular Activity of Structurally Similar Multi-Kinase Inhibitors through Cumulative Effects on Individual Targets. PMID:31257184
Quantitative proteomics and single-nucleus transcriptomics of the sinus node elucidates the foundation of cardiac pacemaking. PMID:31253831
Rapid Aldosterone-Mediated Signaling in the DCT Increases Activity of the Thiazide-Sensitive NaCl Cotransporter. PMID:31253651
Low-Background Acyl-Biotinyl Exchange Largely Eliminates the Coisolation of Non-S-Acylated Proteins and Enables Deep S-Acylproteomic Analysis. PMID:31251020
Enhanced trypsin on a budget: Stabilization, purification and high-temperature application of inexpensive commercial trypsin for proteomics applications. PMID:31246970
Outlining the Grb2 interactome data and its interacting partners in HEK293 cells in absence and presence of epidermal growth factor. PMID:31245515
iTRAQ-based quantitative proteome analysis reveals metabolic changes between a cleistogamous wheat mutant and its wild-type wheat counterpart. PMID:31245178
Urinary tract colonization is enhanced by a plasmid that regulates uropathogenic Acinetobacter baumannii chromosomal genes. PMID:31235751
Application of Bioactive Thermal Proteome Profiling to Decipher the Mechanism of Action of the Lipid Lowering 132-Hydroxy-pheophytin Isolated from a Marine Cyanobacteria. PMID:31234367
Dynamic remodeling of the interactomes of Nematostella vectensis Hsp70 isoforms under heat shock. PMID:31233900
DEG10 contributes to mitochondrial proteostasis, root growth, and seed yield in Arabidopsis. PMID:31225599
Multi-omics insights into functional alterations of the liver in insulin-deficient diabetes mellitus. PMID:31221621
Histopathological and proteomic analyses identify integrin-β1 as a potential mediator of phlebosclerosis in uremic patients. PMID:31214872
Serine-Threonine Kinases Encoded by Split hipA Homologs Inhibit Tryptophanyl-tRNA Synthetase. PMID:31213559
Shigella promotes major alteration of gut epithelial physiology and tissue invasion by shutting off host intracellular transport. PMID:31209035
Novel interconnections of HOG signaling revealed by combined use of two proteomic software packages. PMID:31208443
Proteomic analysis of gemcitabine-resistant pancreatic cancer cells reveals that microtubule-associated protein 2 upregulation associates with taxane treatment. PMID:31205498
Combined transcriptomic and proteomic analysis reveals a diversity of venom-related and toxin-like peptides expressed in the mat anemone Zoanthus natalensis (Cnidaria, Hexacorallia). PMID:31203412
Multi omics analysis of fibrotic kidneys in two mouse models. PMID:31201317
Protein aggregation mediates stoichiometry of protein complexes in aneuploid cells. PMID:31196865
Pharmacoproteomics reveal novel protective activity of bromodomain containing 4 inhibitors on vascular homeostasis in TLR3-mediated airway remodeling. PMID:31195152
Characterization of a novel glycosylated glutathione transferase of Onchocerca ochengi, closest relative of the human river blindness parasite. PMID:31190665
Alteration of Proteomes in First-Generation Cultures of Bacillus pumilus Spores Exposed to Outer Space. PMID:31186338
Posttranslational Modifications Drive Protein Stability to Control the Dynamic Beer Brewing Proteome. PMID:31186289
Two intracellular and cell type-specific bacterial symbionts in the placozoan Trichoplax H2. PMID:31182796
Proteomics of Bordetella pertussis whole-cell and acellular vaccines. PMID:31182148
Individual Physiological Adaptations Enable Selected Bacterial Taxa To Prevail during Long-Term Incubations. PMID:31152013
Clinical biomarker discovery by SWATH-MS based label-free quantitative proteomics: impact of criteria for identification of differentiators and data normalization method. PMID:31151397
Plasmodium pseudo-Tyrosine Kinase-like binds PP1 and SERA5 and is exported to host erythrocytes. PMID:31148576
Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases. PMID:31142855
Plant-derived virus-like particle vaccines drive cross-presentation of influenza A hemagglutinin peptides by human monocyte-derived macrophages. PMID:31123605
Proteomic Analysis of Vocal Fold Fibroblasts Exposed to Cigarette Smoke Extract: Exploring the Pathophysiology of Reinke's Edema. PMID:31123107
Proteases Underground: Analysis of the Maize Root Apoplast Identifies Organ Specific Papain-Like Cysteine Protease Activity. PMID:31114592
Proteomic and Metabolomic Profiling of Deinococcus radiodurans Recovering After Exposure to Simulated Low Earth Orbit Vacuum Conditions. PMID:31110498
Proteomic insight into the pathogenesis of CAPN5-vitreoretinopathy. PMID:31110225
Sum of peak intensities outperforms peak area integration in iTRAQ protein expression measurement by LC-MS/MS using a TripleTOF 5600+ platform. PMID:31110078
Proteome-wide detection of S-nitrosylation targets and motifs using bioorthogonal cleavable-linker-based enrichment and switch technique. PMID:31097712
Glycoproteogenomics: A Frequent Gene Polymorphism Affects the Glycosylation Pattern of the Human Serum Fetuin/α-2-HS-Glycoprotein. PMID:31097672
Nucleoporin Nup155 is part of the p53 network in liver cancer. PMID:31089132
Interactive Peptide Spectral Annotator: A Versatile Web-based Tool for Proteomic Applications. PMID:31088857
The Ser/Thr Kinase PrkC Participates in Cell Wall Homeostasis and Antimicrobial Resistance in Clostridium difficile. PMID:31085703
Metabolic reprogramming involving glycolysis in the hibernating brown bear skeletal muscle. PMID:31080489
Exploring the Potential Role of Moonlighting Function of the Surface-Associated Proteins From Mycobacterium bovis BCG Moreau and Pasteur by Comparative Proteomic. PMID:31080447
Quantitative proteomic analyses of CD4+ and CD8+ T cells reveal differentially expressed proteins in multiple sclerosis patients and healthy controls. PMID:31080378
Cryo-Electron Tomography and Proteomics studies of centrosomes from differentiated quiescent thymocytes. PMID:31076588
SETD1A Methyltransferase Is Physically and Functionally Linked to the DNA Damage Repair Protein RAD18. PMID:31076518
Capillary Zone Electrophoresis-Tandem Mass Spectrometry with Activated Ion Electron Transfer Dissociation for Large-scale Top-down Proteomics. PMID:31073891
Multi-omics characterization of the necrotrophic mycoparasite Saccharomycopsis schoenii. PMID:31071195
Exosomal Transport of Hepatocyte-Derived Drug-Modified Proteins to the Immune System. PMID:31070244
In Vivo Proteome of Pseudomonas aeruginosa in Airways of Cystic Fibrosis Patients. PMID:31060355
Deciphering the Roles of N-Glycans on Collagen-Platelet Interactions. PMID:31055923
Comprehensive proteome and phosphoproteome profiling shows negligible influence of RNAlater on protein abundance and phosphorylation. PMID:31049047
First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study. PMID:31045356
Photocatalytic Protein Damage by Silver Nanoparticles Circumvents Bacterial Stress Response and Multidrug Resistance. PMID:31043515
Structural plasticity of actin-spectrin membrane skeleton and functional role of actin and spectrin in axon degeneration. PMID:31042147
PROTEOFORMER 2.0: Further Developments in the Ribosome Profiling-assisted Proteogenomic Hunt for New Proteoforms. PMID:31040227
The interactome of a family of potential methyltransferases in HeLa cells. PMID:31036863
Navigating in vitro bioactivity data by investigating available resources using model compounds. PMID:31036807
Light-dependent N-terminal phosphorylation of LHCSR3 and LHCB4 are interlinked in Chlamydomonas reinhardtii. PMID:31033075
Campylobacter jejuni Demonstrates Conserved Proteomic and Transcriptomic Responses When Co-cultured With Human INT 407 and Caco-2 Epithelial Cells. PMID:31031730
The synovial fluid proteome differentiates between septic and nonseptic articular pathologies. PMID:31028944
Brain Citrullination Patterns and T Cell Reactivity of Cerebrospinal Fluid-Derived CD4+ T Cells in Multiple Sclerosis. PMID:31024521
Novel CSF biomarkers in genetic frontotemporal dementia identified by proteomics. PMID:31019994
Vps11 and Vps18 of Vps-C membrane traffic complexes are E3 ubiquitin ligases and fine-tune signalling. PMID:31015428
Quantitative proteomic analysis of prostate tissue specimens identifies deregulated protein complexes in primary prostate cancer. PMID:31011308
Systems Biology and Multi-Omics Integration: Viewpoints from the Metabolomics Research Community. PMID:31003499
Molecular Mechanisms of Tungsten Toxicity Differ for Glycine max Depending on Nitrogen Regime. PMID:31001297
Elevated carbon dioxide levels lead to proteome-wide alterations for optimal growth of a fast-growing cyanobacterium, Synechococcus elongatus PCC 11801. PMID:31000743
Circadian Analysis of the Mouse Cerebellum Proteome. PMID:30991638
Plasma protein adsorption on Fe3O4-PEG nanoparticles activates the complement system and induces an inflammatory response. PMID:30988608
More than a Toxin: Protein Inventory of Clostridium tetani Toxoid Vaccines. PMID:30988272
Dark metabolism: a molecular insight into how the Antarctic sea-ice diatom Fragilariopsis cylindrus survives long-term darkness. PMID:30985935
A Protein-Linger Strategy Keeps the Plant On-Hold After Rehydration of Drought-Stressed Beta vulgaris. PMID:30984226
Identification of O-Glcnacylated Proteins in Trypanosoma cruzi. PMID:30984116
Identification, Quantification, and System Analysis of Protein N-ε Lysine Methylation in Anucleate Blood Platelets. PMID:30977292
An Interaction Network of the Human SEPT9 Established by Quantitative Mass Spectrometry. PMID:30975701
Physical Activity Associated Proteomics of Skeletal Muscle: Being Physically Active in Daily Life May Protect Skeletal Muscle From Aging. PMID:30971946
Scavenging organic nitrogen and remodelling lipid metabolism are key survival strategies adopted by the endophytic fungi, Serendipita vermifera and Serendipita bescii to alleviate nitrogen and phosphorous starvation in vitro. PMID:30970176
Chemosynthetic symbiont with a drastically reduced genome serves as primary energy storage in the marine flatworm Paracatenula. PMID:30962361
Defining the RNA interactome by total RNA-associated protein purification. PMID:30962360
Proteomic analysis of the similarities and differences of soil drought and polyethylene glycol stress responses in wheat (Triticum aestivum L.). PMID:30953278
Miniaturised interaction proteomics on a microfluidic platform with ultra-low input requirements. PMID:30948724
Analysis of 1508 Plasma Samples by Capillary-Flow Data-Independent Acquisition Profiles Proteomics of Weight Loss and Maintenance. PMID:30948622
Insertion sequences drive the emergence of a highly adapted human pathogen. PMID:30946644
Intestinal Epithelial Cells and the Microbiome Undergo Swift Reprogramming at the Inception of Colonic Citrobacter rodentium Infection. PMID:30940698
Benzo[ a]pyrene Induction of Glutathione S-Transferases: An Activity-Based Protein Profiling Investigation. PMID:30938511
Quantitative Microproteomics Based Characterization of the Central and Peripheral Nervous System of a Mouse Model of Krabbe Disease. PMID:30926673
EZHIP/CXorf67 mimics K27M mutated oncohistones and functions as an intrinsic inhibitor of PRC2 function in aggressive posterior fossa ependymoma. PMID:30923826
Ubiquitin C-terminal hydrolase L1 (UCH-L1) loss causes neurodegeneration by altering protein turnover in the first postnatal weeks. PMID:30923110
Proteomics of Asrij Perturbation in Drosophila Lymph Glands for Identification of New Regulators of Hematopoiesis. PMID:30923041
The ABCB7-Like Transporter PexA in Rhodobacter capsulatus Is Involved in the Translocation of Reactive Sulfur Species. PMID:30918498
Anaerobic oxidation of ethane by archaea from a marine hydrocarbon seep. PMID:30918404
Combined Transcriptome and Proteome Analysis of Immortalized Human Keratinocytes Expressing Human Papillomavirus 16 (HPV16) Oncogenes Reveals Novel Key Factors and Networks in HPV-Induced Carcinogenesis. PMID:30918060
Silencing of carbonic anhydrase I enhances the malignant potential of exosomes secreted by prostatic tumour cells. PMID:30916466
Caught in a Trap? Proteomic Analysis of Neutrophil Extracellular Traps in Rheumatoid Arthritis and Systemic Lupus Erythematosus. PMID:30915077
Metaproteomic and 16S rRNA Gene Sequencing Analysis of the Infant Fecal Microbiome. PMID:30901843
Autoantibody Biomarker Discovery in Primary Open Angle Glaucoma Using Serological Proteome Analysis (SERPA). PMID:30899261
Capturing site-specific heterogeneity with large-scale N-glycoproteome analysis. PMID:30899004
A post-translational modification of human Norovirus capsid protein attenuates glycan binding. PMID:30899001
MDC1 Interacts with TOPBP1 to Maintain Chromosomal Stability during Mitosis. PMID:30898438
Quantitative Proteomics Links the Intermediate Filament Nestin to Resistance to Targeted BRAF Inhibition in Melanoma Cells. PMID:30890564
Nitric oxide-dependent anaerobic ammonium oxidation. PMID:30886150
Multiplex targeted mass spectrometry assay for one-shot flavivirus diagnosis. PMID:30886083
Human chorionic gonadotrophin pharmaceutical formulations of urinary origin display high levels of contaminant proteins-A label-free quantitation proteomics study. PMID:30883802
Label-free absolute protein quantification with data-independent acquisition. PMID:30880166
Heterogeneous clinical phenotypes and cerebral malformations reflected by rotatin cellular dynamics. PMID:30879067
The chaperone ERp29 is required for tunneling nanotube formation by stabilizing MSec. PMID:30877198
Lysosomal targeting of the ABC transporter TAPL is determined by membrane-localized charged residues. PMID:30877195
LipidII interaction with specific residues of Mycobacterium tuberculosis PknB extracytoplasmic domain governs its optimal activation. PMID:30874556
Cytological, Biochemical and Molecular Events of the Embryogenic State in Douglas-fir (Pseudotsuga menziesii [Mirb.]). PMID:30873184
Histone serotonylation is a permissive modification that enhances TFIID binding to H3K4me3. PMID:30867594
Quantitative proteomic changes in LPS-activated monocyte-derived dendritic cells: A SWATH-MS study. PMID:30867486
Cationic gold nanoparticles elicit mitochondrial dysfunction: a multi-omics study. PMID:30867451
Light-Controlled Affinity Purification of Protein Complexes Exemplified by the Resting ZAP70 Interactome. PMID:30863395
Proteomic analysis reveals that sugar and fatty acid metabolisms play a central role in sterility of the male-sterile line 1355A of cotton. PMID:30862676
IsoProt: A Complete and Reproducible Workflow To Analyze iTRAQ/TMT Experiments. PMID:30855969
A Study into the ADP-Ribosylome of IFN-γ-Stimulated THP-1 Human Macrophage-like Cells Identifies ARTD8/PARP14 and ARTD9/PARP9 ADP-Ribosylation. PMID:30848916
Thylakoid Localized Type 2 NAD(P)H Dehydrogenase NdbA Optimizes Light-Activated Heterotrophic Growth of Synechocystis sp. PCC 6803. PMID:30847494
Neisseria gonorrhoeae MlaA influences gonococcal virulence and membrane vesicle production. PMID:30845186
More Is Not Always Better: Evaluation of 1D and 2D-LC-MS/MS Methods for Metaproteomics. PMID:30837968
Differential miRNA expression profile and proteome in plasma exosomes from patients with paroxysmal nocturnal hemoglobinuria. PMID:30837665
Proteomic Analysis of Arabidopsis pldα1 Mutants Revealed an Important Role of Phospholipase D Alpha 1 in Chloroplast Biogenesis. PMID:30833950
Pro-inflammatory Cytokines Alter the Immunopeptidome Landscape by Modulation of HLA-B Expression. PMID:30833945
Glomerular filtrate proteins in acute cardiorenal syndrome. PMID:30829647
Anti α-enolase antibody is a novel autoimmune biomarker for unexplained recurrent miscarriages. PMID:30827932
Microsampling Capillary Electrophoresis Mass Spectrometry Enables Single-Cell Proteomics in Complex Tissues: Developing Cell Clones in Live Xenopus laevis and Zebrafish Embryos. PMID:30827088
Dynamic pigmentary and structural coloration within cephalopod chromatophore organs. PMID:30824708
Plasma proteome profiling discovers novel proteins associated with non-alcoholic fatty liver disease. PMID:30824564
The temporal profile of activity-dependent presynaptic phospho-signalling reveals long-lasting patterns of poststimulus regulation. PMID:30822303
YESdb: integrative analysis of environmental stress in yeast. PMID:30821814
Sequential Digestion with Trypsin and Elastase in Cross-Linking Mass Spectrometry. PMID:30817130
Colonic epithelial cell diversity in health and inflammatory bowel disease. PMID:30814735
Urinary Proteomics Profiles Are Useful for Detection of Cancer Biomarkers and Changes Induced by Therapeutic Procedures. PMID:30813269
Serum biomarkers identification by iTRAQ and verification by MRM: S100A8/S100A9 levels predict tumor-stroma involvement and prognosis in Glioblastoma. PMID:30808902
Molecular characterization of Histomonas meleagridis exoproteome with emphasis on protease secretion and parasite-bacteria interaction. PMID:30807611
A homopolymeric adenosine tract in the promoter region of nspA influences factor H-mediated serum resistance in Neisseria meningitidis. PMID:30804422
Depletion of the RNA binding protein HNRNPD impairs homologous recombination by inhibiting DNA-end resection and inducing R-loop accumulation. PMID:30799487
In-Depth Proteome Analysis Highlights HepaRG Cells as a Versatile Cell System Surrogate for Primary Human Hepatocytes. PMID:30795634
Oxylipins mediate cell-to-cell communication in Pseudomonas aeruginosa. PMID:30793044
Metabolic, Anti-apoptotic and Immune Evasion Strategies of Primary Human Myeloma Cells Indicate Adaptations to Hypoxia. PMID:30792264
Synbiotic-driven improvement of metabolic disturbances is associated with changes in the gut microbiome in diet-induced obese mice. PMID:30792016
Pre-fractionation Extends but also Creates a Bias in the Detectable HLA Class Ι Ligandome. PMID:30784271
The flavonoid 4,4'-dimethoxychalcone promotes autophagy-dependent longevity across species. PMID:30783116
Multiplexed Relative Quantitation with Isobaric Tagging Mass Spectrometry Reveals Class I Major Histocompatibility Complex Ligand Dynamics in Response to Doxorubicin. PMID:30779550
Unveiling Kiwifruit Metabolite and Protein Changes in the Course of Postharvest Cold Storage. PMID:30778366
Inhibition of histone methyltransferase DOT1L silences ERα gene and blocks proliferation of antiestrogen-resistant breast cancer cells. PMID:30775443
Development of a Sensitive, Scalable Method for Spatial, Cell-Type-Resolved Proteomics of the Human Brain. PMID:30768908
Combined transcriptome and proteome profiling reveals specific molecular brain signatures for sex, maturation and circalunar clock phase. PMID:30767890
A rapid methods development workflow for high-throughput quantitative proteomic applications. PMID:30763335
Modulation of the ATM/autophagy pathway by a G-quadruplex ligand tips the balance between senescence and apoptosis in cancer cells. PMID:30759257
MaxQuant.Live Enables Global Targeting of More Than 25,000 Peptides. PMID:30755466
Extracellular peptide Kratos restricts cell death during vascular development and stress in Arabidopsis. PMID:30753577
Generation of a zebrafish SWATH-MS spectral library to quantify 10,000 proteins. PMID:30747917
Life history shapes variation in egg composition in the blue tit Cyanistes caeruleus. PMID:30740542
Binding Specificity of Native Odorant-Binding Protein Isoforms Is Driven by Phosphorylation and O-N-Acetylglucosaminylation in the Pig Sus scrofa. PMID:30740091
A network of chaperones prevents and detects failures in membrane protein lipid bilayer integration. PMID:30737405
Folliculin regulates mTORC1/2 and WNT pathways in early human pluripotency. PMID:30733432
Comparison of Human and Murine Enteroendocrine Cells by Transcriptomic and Peptidomic Profiling. PMID:30733330
Signal Peptide Peptidase-Like 2c (SPPL2c) impairs vesicular transport and cleavage of SNARE proteins. PMID:30733281
The intramembrane protease SPPL2c promotes male germ cell development by cleaving phospholamban. PMID:30733280
The Antarctic psychrophiles Chlamydomonas spp. UWO241 and ICE-MDV exhibit differential restructuring of photosystem I in response to iron. PMID:30729447
The Schistosomiasis SpleenOME: Unveiling the Proteomic Landscape of Splenomegaly Using Label-Free Mass Spectrometry. PMID:30728824
Fission Yeast NDR/LATS Kinase Orb6 Regulates Exocytosis via Phosphorylation of the Exocyst Complex. PMID:30726745
Reprogramming of Trypanosoma cruzi metabolism triggered by parasite interaction with the host cell extracellular matrix. PMID:30726203
Comprehensive characterization of the adult ND4 Swiss Webster mouse retina: Using discovery-based mass spectrometry to decipher the total proteome and phosphoproteome. PMID:30713425
Identification of Early Salinity Stress-Responsive Proteins in Dunaliella salina by isobaric tags for relative and absolute quantitation (iTRAQ)-Based Quantitative Proteomic Analysis. PMID:30704074
Plasmodium male gametocyte development and transmission are critically regulated by the two putative deadenylases of the CAF1/CCR4/NOT complex. PMID:30703164
Post-translational Regulation of FNIP1 Creates a Rheostat for the Molecular Chaperone Hsp90. PMID:30699359
Metaproteomics reveals potential mechanisms by which dietary resistant starch supplementation attenuates chronic kidney disease progression in rats. PMID:30699108
Reversible SAHH inhibitor protects against glomerulonephritis in lupus-prone mice by downregulating renal α-actinin-4 expression and stabilizing integrin-cytoskeleton linkage. PMID:30696480
Intricate Crosstalk Between Lipopolysaccharide, Phospholipid and Fatty Acid Metabolism in Escherichia coli Modulates Proteolysis of LpxC. PMID:30692974
First Viruses Infecting the Marine Diatom Guinardia delicatula. PMID:30687251
Early Response of Sulfolobus acidocaldarius to Nutrient Limitation. PMID:30687244
Metabolic reconstruction of the genome of candidate Desulfatiglans TRIP_1 and identification of key candidate enzymes for anaerobic phenanthrene degradation. PMID:30680888
Off-target based drug repurposing opportunities for tivantinib in acute myeloid leukemia. PMID:30679640
PIM1 kinase promotes gallbladder cancer cell proliferation via inhibition of proline-rich Akt substrate of 40 kDa (PRAS40). PMID:30666556
Integrated dataset on acute phase protein response in chicken challenged with Escherichia coli lipopolysaccharide endotoxin. PMID:30666314
Proteo-Transcriptomic Dynamics of Cellular Response to HIV-1 Infection. PMID:30659199
Combining LOPIT with differential ultracentrifugation for high-resolution spatial proteomics. PMID:30659192
Multiomics resolution of molecular events during a day in the life of Chlamydomonas. PMID:30659148
Multi-isotype Glycoproteomic Characterization of Serum Antibody Heavy Chains Reveals Isotype- and Subclass-Specific N-Glycosylation Profiles. PMID:30659065
Proteomic analysis of the rice (Oryza officinalis) provides clues on molecular tagging of proteins for brown planthopper resistance. PMID:30658570
Label-free and isobaric tandem mass tag (TMT) multiplexed quantitative proteomic data of two contrasting rice cultivars exposed to drought stress and recovery. PMID:30656201
Characterization of the Src-regulated kinome identifies SGK1 as a key mediator of Src-induced transformation. PMID:30655532
Peptimapper: proteogenomics workflow for the expert annotation of eukaryotic genomes. PMID:30654742
Use of rare-earth elements in the phyllosphere colonizer Methylobacterium extorquens PA1. PMID:30653750
Exosomes harbor B cell targets in pancreatic adenocarcinoma and exert decoy function against complement-mediated cytotoxicity. PMID:30651550
Data-independent Acquisition Improves Quantitative Cross-linking Mass Spectrometry. PMID:30651306
Noncovalently Associated Peptides Observed during Liquid Chromatography-Mass Spectrometry and Their Effect on Cross-Link Analyses. PMID:30649854
ANPELA: analysis and performance assessment of the label-free quantification workflow for metaproteomic studies. PMID:30649171
Adding function to the genome of African Salmonella Typhimurium ST313 strain D23580. PMID:30645593
Proteogenomics Uncovers Critical Elements of Host Response in Bovine Soft Palate Epithelial Cells Following In Vitro Infection with Foot-And-Mouth Disease Virus. PMID:30642035
Quantitative Proteomics Reveals the Dynamic Protein Landscape during Initiation of Human Th17 Cell Polarization. PMID:30641411
Peptidomics Analysis of Milk Protein-Derived Peptides Released over Time in the Preterm Infant Stomach. PMID:30638015
Macrophage Phosphoproteome Analysis Reveals MINCLE-dependent and -independent Mycobacterial Cord Factor Signaling. PMID:30635358
Analysis of the Bacterial and Host Proteins along and across the Porcine Gastrointestinal Tract. PMID:30634649
ZBTB10 binds the telomeric variant repeat TTGGGG and interacts with TRF2. PMID:30629181
Mass Spectrometry-Based Comprehensive Analysis of Pancreatic Cyst Fluids. PMID:30627566
CoExpresso: assess the quantitative behavior of protein complexes in human cells. PMID:30626316
Capillary Zone Electrophoresis-Tandem Mass Spectrometry for Large-Scale Phosphoproteomics with the Production of over 11,000 Phosphopeptides from the Colon Carcinoma HCT116 Cell Line. PMID:30624053
IQGAP-related protein IqgC suppresses Ras signaling during large-scale endocytosis. PMID:30622175
Optimization Workflow for the Analysis of Cross-Linked Peptides Using a Quadrupole Time-of-Flight Mass Spectrometer. PMID:30620560
Protein Profiling of Arabidopsis Roots Treated With Humic Substances: Insights Into the Metabolic and Interactome Networks. PMID:30619394
Differential Protein Expression During Growth on Medium Versus Long-Chain Alkanes in the Obligate Marine Hydrocarbon-Degrading Bacterium Thalassolituus oleivorans MIL-1. PMID:30619200
Unbiased Proteomic Approach Identifies Unique and Coincidental Plasma Biomarkers in Repetitive mTBI and AD Pathogenesis. PMID:30618712
Delineation of the pan-proteome of fish-pathogenic Streptococcus agalactiae strains using a label-free shotgun approach. PMID:30616502
Proteomic characterization of Aspergillus fumigatus isolated from air and surfaces of the International Space Station. PMID:30611835
Predicting peptide presentation by major histocompatibility complex class I: an improved machine learning approach to the immunopeptidome. PMID:30611210
Quantitative Proteomics of Potato Leaves Infected with Phytophthora infestans Provides Insights into Coordinated and Altered Protein Expression during Early and Late Disease Stages. PMID:30609684
Triplet-pore structure of a highly divergent TOM complex of hydrogenosomes in Trichomonas vaginalis. PMID:30608924
Quantitative Proteomic Analysis of Small and Large Extracellular Vesicles (EVs) Reveals Enrichment of Adhesion Proteins in Small EVs. PMID:30608700
Mitochondrial ribosomal protein PTCD3 mutations cause oxidative phosphorylation defects with Leigh syndrome. PMID:30607703
Comprehensive identification of RNA-protein interactions in any organism using orthogonal organic phase separation (OOPS). PMID:30607034
Changes in Synaptic Proteins Precede Neurodegeneration Markers in Preclinical Alzheimer's Disease Cerebrospinal Fluid. PMID:30606734
A chemical biology toolbox to study protein methyltransferases and epigenetic signaling. PMID:30604761
The mTORC1/4E-BP1 axis represents a critical signaling node during fibrogenesis. PMID:30602778
TCO, a Putative Transcriptional Regulator in Arabidopsis, Is a Target of the Protein Kinase CK2. PMID:30597831
Noncanonical Modulation of the eIF2 Pathway Controls an Increase in Local Translation during Neural Wiring. PMID:30595434
Proteomic analysis discovers the differential expression of novel proteins and phosphoproteins in meningioma including NEK9, HK2 and SET and deregulation of RNA metabolism. PMID:30594554
Proteomics and multivariate modelling reveal sex-specific alterations in distinct regions of human carotid atheroma. PMID:30594242
Arabidopsis thaliana responds to colonisation of Piriformospora indica by secretion of symbiosis-specific proteins. PMID:30589877
Microbial metal-sulfide oxidation in inactive hydrothermal vent chimneys suggested by metagenomic and metaproteomic analyses. PMID:30585382
Identification of Hybrid Insulin Peptides (HIPs) in Mouse and Human Islets by Mass Spectrometry. PMID:30585061
Increased Mitochondrial Protein Levels and Bioenergetics in the Musculus Rectus Femoris of Wfs1-Deficient Mice. PMID:30584460
The ER membrane protein complex promotes biogenesis of sterol-related enzymes maintaining cholesterol homeostasis. PMID:30578317
Smell of Infection: A Novel, Noninvasive Method for Detection of Fish Excretory-Secretory Proteins. PMID:30576144
Xylem Sap Proteomics Reveals Distinct Differences Between R Gene- and Endophyte-Mediated Resistance Against Fusarium Wilt Disease in Tomato. PMID:30564219
Comparative Proteomic Analysis Reveals Elevated Capacity for Photosynthesis in Polyphenol Oxidase Expression-Silenced Clematis terniflora DC. Leaves. PMID:30563128
Laboratory strains of Bacillus anthracis exhibit pervasive alteration in expression of proteins related to sporulation under laboratory conditions relative to genetically related wild strains. PMID:30557394
Absolute Quantification of Grapevine Red Blotch Virus in Grapevine Leaf and Petiole Tissues by Proteomics. PMID:30555495
Quantitative Phosphoproteomic and System-Level Analysis of TOR Inhibition Unravel Distinct Organellar Acclimation in Chlamydomonas reinhardtii. PMID:30546371
Associating H2O2-and NO-related changes in the proteome of Mycobacterium smegmatis with enhanced survival in macrophage. PMID:30546046
Proteogenomic Analysis of Burkholderia Species Strains 25 and 46 Isolated from Uraniferous Soils Reveals Multiple Mechanisms to Cope with Uranium Stress. PMID:30545132
Global Proteomic Profiling of Salmonella Infection by a Giant Phage. PMID:30541839
Galectin-8 Favors the Presentation of Surface-Tethered Antigens by Stabilizing the B Cell Immune Synapse. PMID:30540943
Coordinated regulation of transcription by CcpA and the Staphylococcus aureus two-component system HptRS. PMID:30540769
Time-resolved interaction proteomics of the GIGANTEA protein under diurnal cycles in Arabidopsis. PMID:30536871
Small Extracellular Vesicles in Rat Serum Contain Astrocyte-Derived Protein Biomarkers of Repetitive Stress. PMID:30535257
Intelligence Algorithms for Protein Classification by Mass Spectrometry. PMID:30534555
A Primer on Data Analytics in Functional Genomics: How to Move from Data to Insight? PMID:30522862
A novel lncRNA, TCONS_00006195, represses hepatocellular carcinoma progression by inhibiting enzymatic activity of ENO1. PMID:30518748
Stable-protein Pair Analysis as A Novel Strategy to Identify Proteomic Signatures: Application To Seminal Plasma From Infertile Patients. PMID:30518674
In Vitro and In Vivo Proteomic Comparison of Human Neural Progenitor Cell-Induced Photoreceptor Survival. PMID:30515959
Protein O-fucosyltransferase 2-mediated O-glycosylation of the adhesin MIC2 is dispensable for Toxoplasma gondii tachyzoite infection. PMID:30514763
Structural basis for activation of plasma-membrane Ca2+-ATPase by calmodulin. PMID:30511020
Proteomic Analysis of Plasmodesmata From Populus Cell Suspension Cultures in Relation With Callose Biosynthesis. PMID:30510561
Olfactory cleft proteome does not reflect olfactory performance in patients with idiopathic and postinfectious olfactory disorder: A pilot study. PMID:30510230
An Alliance of Gel-Based and Gel-Free Proteomic Techniques Displays Substantial Insight Into the Proteome of a Virulent and an Attenuated Histomonas meleagridis Strain. PMID:30505807
A High-throughput Bead-based Affinity Assay Enables Analysis of Genital Protein Signatures in Women At Risk of HIV Infection. PMID:30504243
The human allicin-proteome: S-thioallylation of proteins by the garlic defence substance allicin and its biological effects. PMID:30500420
Site-Specific K63 Ubiquitinomics Provides Insights into Translation Regulation under Stress. PMID:30489083
Genomic and exoproteomic diversity in plant biomass degradation approaches among Aspergilli. PMID:30487660
Trophoblast organoids as a model for maternal-fetal interactions during human placentation. PMID:30487605
Mapping the Proteome of the Synaptic Cleft through Proximity Labeling Reveals New Cleft Proteins. PMID:30487426
Microtubule-Based Control of Motor-Clutch System Mechanics in Glioma Cell Migration. PMID:30485822
Identification of proteins responding to pathogen-infection in the red alga Pyropia yezoensis using iTRAQ quantitative proteomics. PMID:30482156
MIR sequences recruit zinc finger protein ZNF768 to expressed genes. PMID:30476274
Interactome and Proteome Dynamics Uncover Immune Modulatory Associations of the Pathogen Sensing Factor cGAS. PMID:30471916
Differences in plasma fibrin clot composition in patients with thrombotic antiphospholipid syndrome compared with venous thromboembolism. PMID:30470809
Distinct editing functions of natural HLA-DM allotypes impact antigen presentation and CD4+ T cell activation. PMID:30467419
In-depth analysis of Bacillus subtilis proteome identifies new ORFs and traces the evolutionary history of modified proteins. PMID:30467398
Proteome Investigation of Rat Lungs subjected to Ex Vivo Perfusion (EVLP). PMID:30467300
Specialisation events of fungal metacommunities exposed to a persistent organic pollutant are suggestive of augmented pathogenic potential. PMID:30466483
Recruitment of Cytosolic J-Proteins by TOM Receptors Promotes Mitochondrial Protein Biogenesis. PMID:30463002
Mapping the O-glycoproteome using site-specific extraction of O-linked glycopeptides (EXoO). PMID:30459171
Loss of the Mia40a oxidoreductase leads to hepato-pancreatic insufficiency in zebrafish. PMID:30457989
Transformation-induced stress at telomeres is counteracted through changes in the telomeric proteome including SAMHD1. PMID:30456372
Proteomics and C9orf72 neuropathology identify ribosomes as poly-GR/PR interactors driving toxicity. PMID:30456350
A proteomic dataset of secreted proteins by three Staphylococcus saprophyticus strains. PMID:30456272
Targeting CDK9 Reactivates Epigenetically Silenced Genes in Cancer. PMID:30454645
Transcriptome and Proteome of Fish-Pathogenic Streptococcus agalactiae Are Modulated by Temperature. PMID:30450092
Endothelial cell rearrangements during vascular patterning require PI3-kinase-mediated inhibition of actomyosin contractility. PMID:30446640
Food Perception Primes Hepatic ER Homeostasis via Melanocortin-Dependent Control of mTOR Activation. PMID:30445039
The development of a new parameter for tracking post-transcriptional regulation allows the detailed map of the Pseudomonas aeruginosa Crc regulon. PMID:30429516
REX1 is the critical target of RNF12 in imprinted X chromosome inactivation in mice. PMID:30420655
Importance of Pyruvate Sensing and Transport for the Resuscitation of Viable but Nonculturable Escherichia coli K-12. PMID:30420452
Trypanosomes can initiate nuclear export co-transcriptionally. PMID:30418648
Quantification of Calcyclin and Heat Shock Protein 90 in Sera from Women with and without Preeclampsia by Mass Spectrometry. PMID:30417587
HLA-B57 micropolymorphism defines the sequence and conformational breadth of the immunopeptidome. PMID:30410026
Proteomic Profiling of Burkholderia thailandensis During Host Infection Using Bio-Orthogonal Noncanonical Amino Acid Tagging (BONCAT). PMID:30406044
Dynamic proteomic changes in soft wheat seeds during accelerated ageing. PMID:30405971
Comparative Glycomics of Immunoglobulin A and G From Saliva and Plasma Reveals Biomarker Potential. PMID:30405629
Surface Exposure and Packing of Lipoproteins into Outer Membrane Vesicles Are Coupled Processes in Bacteroides. PMID:30404931
Single Amino Acid Variant Discovery in Small Numbers of Cells. PMID:30404448
Proteome-wide Analysis of Protein Thermal Stability in the Model Higher Plant Arabidopsis thaliana. PMID:30401684
The PRIDE database and related tools and resources in 2019: improving support for quantification data. PMID:30395289
The European Nucleotide Archive in 2018. PMID:30395270
Activated hepatic stellate cells promote epithelial-to-mesenchymal transition in hepatocellular carcinoma through transglutaminase 2-induced pseudohypoxia. PMID:30393774
NuRD-interacting protein ZFP296 regulates genome-wide NuRD localization and differentiation of mouse embryonic stem cells. PMID:30389936
Combined multivariate analysis and machine learning reveals a predictive module of metabolic stress response in Arabidopsis thaliana. PMID:30387490
A Metabolic Labeling Strategy for Relative Protein Quantification in Clostridioides difficile. PMID:30386308
Online Parallel Accumulation-Serial Fragmentation (PASEF) with a Novel Trapped Ion Mobility Mass Spectrometer. PMID:30385480
Aspartyl Protease 5 Matures Dense Granule Proteins That Reside at the Host-Parasite Interface in Toxoplasma gondii. PMID:30377279
HCN Regulates Cellular Processes through Posttranslational Modification of Proteins by S-cyanylation. PMID:30377236
Acid bone lysate activates TGFβ signalling in human oral fibroblasts. PMID:30375456
Ribosome profiles and riboproteomes of healthy and Potato virus A- and Agrobacterium-infected Nicotiana benthamiana plants. PMID:30375150
Extraction and biomolecular analysis of dermal interstitial fluid collected with hollow microneedles. PMID:30374463
FlashPack: Fast and Simple Preparation of Ultrahigh-performance Capillary Columns for LC-MS. PMID:30373789
Characterisation of infection associated microRNA and protein cargo in extracellular vesicles of Theileria annulata infected leukocytes. PMID:30370674
FMRP recruitment of β-catenin to the translation pre-initiation complex represses translation. PMID:30361391
Proteome-transcriptome analysis and proteome remodeling in mouse lens epithelium and fibers. PMID:30359574
Proteomic analysis of Lactobacillus casei GCRL163 cell-free extracts reveals a SecB homolog and other biomarkers of prolonged heat stress. PMID:30359441
ArrayExpress update - from bulk to single-cell expression data. PMID:30357387
Slc7a5 regulates Kv1.2 channels and modifies functional outcomes of epilepsy-linked channel mutations. PMID:30356053
Clostridial Butyrate Biosynthesis Enzymes Are Significantly Depleted in the Gut Microbiota of Nonobese Diabetic Mice. PMID:30355671
LRP1 (Low-Density Lipoprotein Receptor-Related Protein 1) Regulates Smooth Muscle Contractility by Modulating Ca2+ Signaling and Expression of Cytoskeleton-Related Proteins. PMID:30354243
Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome capture. PMID:30352994
Quantitative Proteomics of the 2016 WHO Neisseria gonorrhoeae Reference Strains Surveys Vaccine Candidates and Antimicrobial Resistance Determinants. PMID:30352803
SNAREs SYP121 and SYP122 Mediate the Secretion of Distinct Cargo Subsets. PMID:30348815
Revealing the cellular degradome by mass spectrometry analysis of proteasome-cleaved peptides. PMID:30346940
Module-detection approaches for the integration of multilevel omics data highlight the comprehensive response of Aspergillus fumigatus to caspofungin. PMID:30342519
Whole Proteome Profiling of N-Myristoyltransferase Activity and Inhibition Using Sortase A. PMID:30341083
Peanut Stunt Virus and Its Satellite RNA Trigger Changes in Phosphorylation in N. benthamiana Infected Plants at the Early Stage of the Infection. PMID:30340407
Identification of Potential Plasma Biomarkers for Abdominal Aortic Aneurysm Using Tandem Mass Tag Quantitative Proteomics. PMID:30340394
Comparative Hippocampal Synaptic Proteomes of Rodents and Primates: Differences in Neuroplasticity-Related Proteins. PMID:30333727
S-palmitoylation Is Required for the Control of Growth Cone Morphology of DRG Neurons by CNP-Induced cGMP Signaling. PMID:30319353
Disrupted alternative splicing for genes implicated in splicing and ciliogenesis causes PRPF31 retinitis pigmentosa. PMID:30315276
Candidate Treponema pallidum biomarkers uncovered in urine from individuals with syphilis using mass spectrometry. PMID:30311792
Dishevelled enables casein kinase 1-mediated phosphorylation of Frizzled 6 required for cell membrane localization. PMID:30309985
Insight into the sulfur metabolism of Desulfurella amilsii by differential proteomics. PMID:30307104
OpenProt: a more comprehensive guide to explore eukaryotic coding potential and proteomes. PMID:30299502
C16-ceramide is a natural regulatory ligand of p53 in cellular stress response. PMID:30297838
PRP4KA, a Putative Spliceosomal Protein Kinase, Is Important for Alternative Splicing and Development in Arabidopsis thaliana. PMID:30297453
The jPOST environment: an integrated proteomics data repository and database. PMID:30295851
In-Search Assignment of Monoisotopic Peaks Improves the Identification of Cross-Linked Peptides. PMID:30293428
Antiepileptic drug carbamazepine promotes horizontal transfer of plasmid-borne multi-antibiotic resistance genes within and across bacterial genera. PMID:30291330
Quantitative Proteomics Identification of Seminal Fluid Proteins in Male Drosophila melanogaster. PMID:30287546
High-throughput proteomic profiling of the fish liver following bacterial infection. PMID:30285610
Filter-Aided Sample Preparation Procedure for Mass Spectrometric Analysis of Plant Histones. PMID:30283482
Caloric restriction promotes functional changes involving short-chain fatty acid biosynthesis in the rat gut microbiota. PMID:30283130
The evolutionary conserved FOXJ1 target gene Fam183b is essential for motile cilia in Xenopus but dispensable for ciliary function in mice. PMID:30279523
Quantitative phosphoproteomic analysis identifies novel functional pathways of tumor suppressor DLC1 in estrogen receptor positive breast cancer. PMID:30278072
Nonsense-mediated mRNA decay involves two distinct Upf1-bound complexes. PMID:30275269
New insights into the cellular temporal response to proteostatic stress. PMID:30272558
Expanding the Use of Spectral Libraries in Proteomics. PMID:30270626
A mitochondrial proteome profile indicative of type 2 diabetes mellitus in skeletal muscles. PMID:30266947
Robust determination of differential abundance in shotgun proteomics using nonparametric statistics. PMID:30259924
iProX: an integrated proteome resource. PMID:30252093
Microscopic and Proteomic Analysis of Dissected Developing Barley Endosperm Layers Reveals the Starchy Endosperm as Prominent Storage Tissue for ER-Derived Hordeins Alongside the Accumulation of Barley Protein Disulfide Isomerase (HvPDIL1-1). PMID:30250475
Proteomic analysis identifies highly expressed plasma membrane proteins for detection and therapeutic targeting of specific breast cancer subtypes. PMID:30250408
Feasibility of a plasma bioassay to assess oxidative protection of low-density lipoproteins by high-density lipoproteins. PMID:30244943
Differential Roles of the Thylakoid Lumenal Deg Protease Homologs in Chloroplast Proteostasis. PMID:30237207
Targeted Analysis of Lysosomal Directed Proteins and Their Sites of Mannose-6-phosphate Modification. PMID:30237200
Global Profiling of Lysine Acetylation in Borrelia burgdorferi B31 Reveals Its Role in Central Metabolism. PMID:30233522
Nidogen-1 is a novel extracellular ligand for the NKp44 activating receptor. PMID:30228939
Differential Proteome Analysis of Human Neuroblastoma Xenograft Primary Tumors and Matched Spontaneous Distant Metastases. PMID:30228356
Proteome analysis reveals a role of rainbow trout lymphoid organs during Yersinia ruckeri infection process. PMID:30228307
Partial enzymatic reactions: A missed opportunity in proteomics research. PMID:30221418
An Atypical Parvovirus Drives Chronic Tubulointerstitial Nephropathy and Kidney Fibrosis. PMID:30220458
Structural determinants of Rab11 activation by the guanine nucleotide exchange factor SH3BP5. PMID:30217979
Proteomics reveals signal peptide features determining the client specificity in human TRAP-dependent ER protein import. PMID:30217974
Functional Proteomics and Deep Network Interrogation Reveal a Complex Mechanism of Action of Midostaurin in Lung Cancer Cells. PMID:30217950
In vivo cross-linking supports a head-to-tail mechanism for regulation of the plant plasma membrane P-type H+-ATPase. PMID:30217814
Data for Tandem Mass Tag (TMT) proteomic analysis of the pancreas during the early phase of experimental pancreatitis. PMID:30211274
Nanowell-mediated two-dimensional liquid chromatography enables deep proteome profiling of <1000 mammalian cells. PMID:30210768
Label-Free Proteomic Approach to Characterize Protease-Dependent and -Independent Effects of sarA Inactivation on the Staphylococcus aureus Exoproteome. PMID:30209945
A comparative analysis of label-free liquid chromatography-mass spectrometry liver proteomic profiles highlights metabolic differences between pig breeds. PMID:30208024
Phosphoproteomic-based kinase profiling early in influenza virus infection identifies GRK2 as antiviral drug target. PMID:30206219
Knockout of the Hmt1p Arginine Methyltransferase in Saccharomyces cerevisiae Leads to the Dysregulation of Phosphate-associated Genes and Processes. PMID:30206180
"Two hits - one stone"; increased efficacy of cisplatin-based therapies by targeting PCNA's role in both DNA repair and cellular signaling. PMID:30197755
Human Dystrophin Structural Changes upon Binding to Anionic Membrane Lipids. PMID:30197181
Proteomics (SWATH-MS) informed by transcriptomics approach of tropical herb Persicaria minor leaves upon methyl jasmonate elicitation. PMID:30186693
Metabolic Reprogramming of Clostridioides difficile During the Stationary Phase With the Induction of Toxin Production. PMID:30186274
Oocyte-specific maternal Slbp2 is required for replication-dependent histone storage and early nuclear cleavage in zebrafish oogenesis and embryogenesis. PMID:30185624
Fast Open Modification Spectral Library Searching through Approximate Nearest Neighbor Indexing. PMID:30184435
The Protein Coded by a Short Open Reading Frame, Not by the Annotated Coding Sequence, Is the Main Gene Product of the Dual-Coding Gene MIEF1. PMID:30181344
Mutation of the Surface Layer Protein SlpB Has Pleiotropic Effects in the Probiotic Propionibacterium freudenreichii CIRM-BIA 129. PMID:30174657
Proteome Profiling of Primary Pancreatic Ductal Adenocarcinomas Undergoing Additive Chemoradiation Link ALDH1A1 to Early Local Recurrence and Chemoradiation Resistance. PMID:30172883
Evaluation of sample preparation methods for mass spectrometry-based proteomic analysis of barley leaves. PMID:30159003
In vivo phosphoproteomics reveals kinase activity profiles that predict treatment outcome in triple-negative breast cancer. PMID:30158526
Proteomic Analysis of the Function of a Novel Cold-Regulated Multispanning Transmembrane Protein COR413-PM1 in Arabidopsis. PMID:30158496
The NAD+ Salvage Pathway Supports PHGDH-Driven Serine Biosynthesis. PMID:30157431
The Phytophthora infestans Haustorium Is a Site for Secretion of Diverse Classes of Infection-Associated Proteins. PMID:30154258
Proteomic comparison of selective breeding and growth hormone transgenesis in fish: Unique pathways to enhanced growth. PMID:30153513
Quantitative Proteomics for Xenopus Embryos II, Data Analysis. PMID:30151768
Argentilactone Molecular Targets in Paracoccidioides brasiliensis Identified by Chemoproteomics. PMID:30150478
The dual methyltransferase METTL13 targets N terminus and Lys55 of eEF1A and modulates codon-specific translation rates. PMID:30143613
Determining Allele-Specific Protein Expression (ASPE) Using a Novel Quantitative Concatamer Based Proteomics Method. PMID:30141943
Global phosphoproteomic analysis identifies SRMS-regulated secondary signaling intermediates. PMID:30140170
STAT3 associates with vacuolar H+-ATPase and regulates cytosolic and lysosomal pH. PMID:30127373
TMEM41B is a novel regulator of autophagy and lipid mobilization. PMID:30126924
p62-Dependent Phase Separation of Patient-Derived KEAP1 Mutations and NRF2. PMID:30126895
SPOP promotes transcriptional expression of DNA repair and replication factors to prevent replication stress and genomic instability. PMID:30124983
Balancing sufficiency and impact in reporting standards for mass spectrometry imaging experiments. PMID:30124809
Biphasic cellular adaptations and ecological implications of Alteromonas macleodii degrading a mixture of algal polysaccharides. PMID:30116038
An Integrated, High-Throughput Strategy for Multiomic Systems Level Analysis. PMID:30114907
Proteomic Analysis of Urine from California Sea Lions ( Zalophus californianus): A Resource for Urinary Biomarker Discovery. PMID:30113852
Characterization of a L-Gulono-1,4-Lactone Oxidase Like Protein in the Floral Nectar of Mucuna sempervirens, Fabaceae. PMID:30105046
Microscale Reversed-Phase Liquid Chromatography/Capillary Zone Electrophoresis-Tandem Mass Spectrometry for Deep and Highly Sensitive Bottom-Up Proteomics: Identification of 7500 Proteins with Five Micrograms of an MCF7 Proteome Digest. PMID:30102516
Protein encoded in human telomerase RNA is involved in cell protective pathways. PMID:30102362
An ancient family of mobile genomic islands introducing cephalosporinase and carbapenemase genes in Enterobacteriaceae. PMID:30101693
Repetitive somatic embryogenesis induced cytological and proteomic changes in embryogenic lines of Pseudotsuga menziesii [Mirb.]. PMID:30097018
Proteome Profiles of Head Kidney and Spleen of Rainbow Trout (Oncorhynchus Mykiss). PMID:30094954
Bordetella pertussis and Bordetella bronchiseptica filamentous hemagglutinins are processed at different sites. PMID:30087831
Proteomic distinction of renal oncocytomas and chromophobe renal cell carcinomas. PMID:30087584
A tissue-based draft map of the murine MHC class I immunopeptidome. PMID:30084848
Temporal Proteomic Analysis of Pancreatic β-Cells in Response to Lipotoxicity and Glucolipotoxicity. PMID:30082485
A Novel Iron Transporter SPD_1590 in Streptococcus pneumoniae Contributing to Bacterial Virulence Properties. PMID:30079056
A secretome profile indicative of oleate-induced proliferation of HepG2 hepatocellular carcinoma cells. PMID:30076294
Glycomic Profiling Highlights Increased Fucosylation in Pseudomyxoma Peritonei. PMID:30072579
Metabolic oscillations on the circadian time scale in Drosophila cells lacking clock genes. PMID:30072421
Species comparison of liver proteomes reveals links to naked mole-rat longevity and human aging. PMID:30068331
An overview of Phoneutria nigriventer spider venom using combined transcriptomic and proteomic approaches. PMID:30067761
GM-CSF driven myeloid cells in adipose tissue link weight gain and insulin resistance via formation of 2-aminoadipate. PMID:30065264
FBP17 and CIP4 recruit SHIP2 and lamellipodin to prime the plasma membrane for fast endophilin-mediated endocytosis. PMID:30061681
Recapitulation of Human Neural Microenvironment Signatures in iPSC-Derived NPC 3D Differentiation. PMID:30057262
Deoxynivalenol induces structural alterations in epidermoid carcinoma cells A431 and impairs the response to biomechanical stimulation. PMID:30054545
Dose- and time-dependent effects of triethylene glycol dimethacrylate on the proteome of human THP-1 monocytes. PMID:30051916
Glutamate receptor δ2 serum antibodies in pediatric opsoclonus myoclonus ataxia syndrome. PMID:30045961
SWATH-MS based quantitative proteomics analysis reveals that curcumin alters the metabolic enzyme profile of CML cells by affecting the activity of miR-22/IPO7/HIF-1α axis. PMID:30045750
Comparative proteomics of the two T. brucei PABPs suggests that PABP2 controls bulk mRNA. PMID:30040867
The type VI secretion system deploys antifungal effectors against microbial competitors. PMID:30038307
Abnormal RNA stability in amyotrophic lateral sclerosis. PMID:30030424
Proteomic Investigation of the Binding Agent between Liver Glycogen β Particles. PMID:30023874
p38-mediated phosphorylation at T367 induces EZH2 cytoplasmic localization to promote breast cancer metastasis. PMID:30022044
Chemical Proteomic Analysis of Serine Hydrolase Activity in Niemann-Pick Type C Mouse Brain. PMID:30018533
The Iceman's Last Meal Consisted of Fat, Wild Meat, and Cereals. PMID:30017480
Exploring bioactive peptides from bacterial secretomes using PepSAVI-MS: identification and characterization of Bac-21 from Enterococcus faecalis pPD1. PMID:30014612
Obesity-induced protein carbonylation in murine adipose tissue regulates the DNA-binding domain of nuclear zinc finger proteins. PMID:30012885
Sex-Dependent Variation of Pumpkin (Cucurbita maxima cv. Big Max) Nectar and Nectaries as Determined by Proteomics and Metabolomics. PMID:30008725
Rapid Cue-Specific Remodeling of the Nascent Axonal Proteome. PMID:30008298
The Impact of Oncogenic EGFRvIII on the Proteome of Extracellular Vesicles Released from Glioblastoma Cells. PMID:30006486
A Cobalamin Activity-Based Probe Enables Microbial Cell Growth and Finds New Cobalamin-Protein Interactions across Domains. PMID:30006406
Integrated Analysis of Quantitative Proteome and Transcriptional Profiles Reveals the Dynamic Function of Maternally Expressed Proteins After Parthenogenetic Activation of Buffalo Oocyte. PMID:30002204
Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis. PMID:30002203
Radio-sensitizing effects of VE-821 and beyond: Distinct phosphoproteomic and metabolomic changes after ATR inhibition in irradiated MOLT-4 cells. PMID:30001349
IKK promotes cytokine-induced and cancer-associated AMPK activity and attenuates phenformin-induced cell death in LKB1-deficient cells. PMID:29991651
Comparison of Nuclear Matrix and Mitotic Chromosome Scaffold Proteins in Drosophila S2 Cells-Transmission of Hallmarks of Nuclear Organization Through Mitosis. PMID:29991507
Suppressor of IKKepsilon forms direct interactions with cytoskeletal proteins, tubulin and α-actinin, linking innate immunity to the cytoskeleton. PMID:29988566
Characterization of Plasmodium vivax Proteins in Plasma-Derived Exosomes From Malaria-Infected Liver-Chimeric Humanized Mice. PMID:29988527
In-depth proteomic analyses of Haliotis laevigata (greenlip abalone) nacre and prismatic organic shell matrix. PMID:29983641
Architectural Features of Human Mitochondrial Cysteine Desulfurase Complexes from Crosslinking Mass Spectrometry and Small-Angle X-Ray Scattering. PMID:29983374
Evolutionary trade-offs associated with loss of PmrB function in host-adapted Pseudomonas aeruginosa. PMID:29980663
Influenza A Virus Induces Autophagosomal Targeting of Ribosomal Proteins. PMID:29980615
Antennal Protein Profile in Honeybees: Caste and Task Matter More Than Age. PMID:29973886
Multifunctional Activity-Based Protein Profiling of the Developing Lung. PMID:29972024
A System-wide Approach to Monitor Responses to Synergistic BRAF and EGFR Inhibition in Colorectal Cancer Cells. PMID:29970458
Dedicated surveillance mechanism controls G-quadruplex forming non-coding RNAs in human mitochondria. PMID:29967381
Chloroplast Acetyltransferase NSI Is Required for State Transitions in Arabidopsis thaliana. PMID:29967049
Microbial Community Structure-Function Relationships in Yaquina Bay Estuary Reveal Spatially Distinct Carbon and Nitrogen Cycling Capacities. PMID:29963029
Patients with early-stage oropharyngeal cancer can be identified with label-free serum proteomics. PMID:29961760
Endogenous Cell Type-Specific Disrupted in Schizophrenia 1 Interactomes Reveal Protein Networks Associated With Neurodevelopmental Disorders. PMID:29961565
Proteomic Analysis of Hippocampus in a Mouse Model of Depression Reveals Neuroprotective Function of Ubiquitin C-terminal Hydrolase L1 (UCH-L1) via Stress-induced Cysteine Oxidative Modifications. PMID:29959188
Using RT-qPCR, Proteomics, and Microscopy to Unravel the Spatio-Temporal Expression and Subcellular Localization of Hordoindolines Across Development in Barley Endosperm. PMID:29951075
Dissecting ribosomal particles throughout the kingdoms of life using advanced hybrid mass spectrometry methods. PMID:29950687
Rab18 is not necessary for lipid droplet biogenesis or turnover in human mammary carcinoma cells. PMID:29949452
Revealing the immune perturbation of black phosphorus nanomaterials to macrophages by understanding the protein corona. PMID:29946125
Quantifying and Localizing the Mitochondrial Proteome Across Five Tissues in A Mouse Population. PMID:29945935
Spatially Resolved Proteome Mapping of Laser Capture Microdissected Tissue with Automated Sample Transfer to Nanodroplets. PMID:29941660
Temperature-induced changes in the wheat phosphoproteome reveal temperature-regulated interconversion of phosphoforms. PMID:29939309
Inner ear exosomes and their potential use as biomarkers. PMID:29933376
Quantitative Crotonylome Analysis Expands the Roles of p300 in the Regulation of Lysine Crotonylation Pathway. PMID:29932303
A novel bacterial sulfur oxidation pathway provides a new link between the cycles of organic and inorganic sulfur compounds. PMID:29930335
Surfactant and Chaotropic Agent Assisted Sequential Extraction/On-Pellet Digestion (SCAD) for Enhanced Proteomics. PMID:29923408
Induction by Bradyrhizobium diazoefficiens of Different Pathways for Growth in D-mannitol or L-arabinose Leading to Pronounced Differences in CO2 Fixation, O2 Consumption, and Lateral-Flagellum Production. PMID:29922265
Proteomic Analysis of Zika Virus Infected Primary Human Fetal Neural Progenitors Suggests a Role for Doublecortin in the Pathological Consequences of Infection in the Cortex. PMID:29922247
Nuclear PTEN safeguards pre-mRNA splicing to link Golgi apparatus for its tumor suppressive role. PMID:29921876
Multi-Omics and Targeted Approaches to Determine the Role of Cellular Proteases in Streptomyces Protein Secretion. PMID:29915569
MS analysis of a dilution series of bacteria:phytoplankton to improve detection of low abundance bacterial peptides. PMID:29915279
Proteomics Reveals Scope of Mycolactone-mediated Sec61 Blockade and Distinctive Stress Signature. PMID:29915147
Proteome Response of a Metabolically Flexible Anoxygenic Phototroph to Fe(II) Oxidation. PMID:29915106
Phosphoproteomics of Retinoblastoma: A Pilot Study Identifies Aberrant Kinases. PMID:29914080
Endogenous Stochastic Decoding of the CUG Codon by Competing Ser- and Leu-tRNAs in Ascoidea asiatica. PMID:29910077
Serum Proteomic Profiling to Identify Biomarkers of Premature Carotid Atherosclerosis. PMID:29907817
Integrative Analysis of Proteome and Ubiquitylome Reveals Unique Features of Lysosomal and Endocytic Pathways in Gefitinib-Resistant Non-Small Cell Lung Cancer Cells. PMID:29901268
Separable roles for Mec1/ATR in genome maintenance, DNA replication, and checkpoint signaling. PMID:29899143
α-synuclein oligomers interact with ATP synthase and open the permeability transition pore in Parkinson's disease. PMID:29895861
Suppression of detyrosinated microtubules improves cardiomyocyte function in human heart failure. PMID:29892068
Coupling Secretomics with Enzyme Activities To Compare the Temporal Processes of Wood Metabolism among White and Brown Rot Fungi. PMID:29884760
TCA precipitation and ethanol/HCl single-step purification evaluation: One-dimensional gel electrophoresis, bradford assays, spectrofluorometry and Raman spectroscopy data on HSA, Rnase, lysozyme - Mascots and Skyline data. PMID:29876449
Proteomic analysis of pitcher fluid from Nepenthes × ventrata. PMID:29876422
Control of seed dormancy and germination by DOG1-AHG1 PP2C phosphatase complex via binding to heme. PMID:29875377
Choice of costimulatory domains and of cytokines determines CAR T-cell activity in neuroblastoma. PMID:29872565
Mesenchymal stem cells enhance tumorigenic properties of human glioblastoma through independent cell-cell communication mechanisms. PMID:29872504
The prion protein is embedded in a molecular environment that modulates transforming growth factor β and integrin signaling. PMID:29872131
Lgl reduces endosomal vesicle acidification and Notch signaling by promoting the interaction between Vap33 and the V-ATPase complex. PMID:29871910
Comparative Proteomics of Three Species of Ammonia-Oxidizing Bacteria. PMID:29867847
Changed Expression of Cytoskeleton Proteins During Lung Injury in a Mouse Model of Streptococcus pneumoniae Infection. PMID:29867838
Proteomic and Bioinformatic Studies for the Characterization of Response to Pemetrexed in Platinum Drug Resistant Ovarian Cancer. PMID:29867465
CharmeRT: Boosting Peptide Identifications by Chimeric Spectra Identification and Retention Time Prediction. PMID:29863353
Base-excision repair deficiency alone or combined with increased oxidative stress does not increase mtDNA point mutations in mice. PMID:29860357
Identification of MOSPD2, a novel scaffold for endoplasmic reticulum membrane contact sites. PMID:29858488
Urinary Proteome Analysis Identified Neprilysin and VCAM as Proteins Involved in Diabetic Nephropathy. PMID:29854824
Characterization of the caprolactam degradation pathway in Pseudomonas jessenii using mass spectrometry-based proteomics. PMID:29850960
Fermentative Spirochaetes mediate necromass recycling in anoxic hydrocarbon-contaminated habitats. PMID:29849169
ProteomeTools: Systematic Characterization of 21 Post-translational Protein Modifications by Liquid Chromatography Tandem Mass Spectrometry (LC-MS/MS) Using Synthetic Peptides. PMID:29848782
Extended investigation of tube-gel sample preparation: a versatile and simple choice for high throughput quantitative proteomics. PMID:29844437
Biochemical Characterization of Isoniazid-resistant Mycobacterium tuberculosis: Can the Analysis of Clonal Strains Reveal Novel Targetable Pathways? PMID:29844232
Molecular Composition of Vestibular Hair Bundles. PMID:29844221
Exportin Crm1 is repurposed as a docking protein to generate microtubule organizing centers at the nuclear pore. PMID:29809148
The β3-integrin endothelial adhesome regulates microtubule-dependent cell migration. PMID:29794156
Nup133 Is Required for Proper Nuclear Pore Basket Assembly and Dynamics in Embryonic Stem Cells. PMID:29791854
LRRK2 is a negative regulator of Mycobacterium tuberculosis phagosome maturation in macrophages. PMID:29789389
Adipose tissue proteomic analyses to study puberty in Brahman heifers. PMID:29788311
Molecular modularity and asymmetry of the molluscan mantle revealed by a gene expression atlas. PMID:29788257
Immunopeptidomic Profiling of HLA-A2-Positive Triple Negative Breast Cancer Identifies Potential Immunotherapy Target Antigens. PMID:29786170
PAF1 complex interactions with SETDB1 mediate promoter H3K9 methylation and transcriptional repression of Hoxa9 and Meis1 in acute myeloid leukemia. PMID:29774127
GSTM3 and GSTP1: novel players driving tumor progression in cervical cancer. PMID:29774096
Ablation of Sirtuin5 in the postnatal mouse heart results in protein succinylation and normal survival in response to chronic pressure overload. PMID:29769314
Evolutionary instability of CUG-Leu in the genetic code of budding yeasts. PMID:29760453
Differentially abundant proteins associated with heterosis in the primary roots of popcorn. PMID:29758068
Quantitative Tandem Affinity Purification, an Effective Tool to Investigate Protein Complex Composition in Plant Hormone Signaling: Strigolactones in the Spotlight. PMID:29755490
The Transcription Factor Hif-1 Enhances the Radio-Resistance of Mouse MSCs. PMID:29755367
Additional oxidative stress reroutes the global response of Aspergillus fumigatus to iron depletion. PMID:29747589
IonStar enables high-precision, low-missing-data proteomics quantification in large biological cohorts. PMID:29743190
LC-MS/MS characterization of xyloside-primed glycosaminoglycans with cytotoxic properties reveals structural diversity and novel glycan modifications. PMID:29739851
Metabolic Reprogramming of Vibrio cholerae Impaired in Respiratory NADH Oxidation Is Accompanied by Increased Copper Sensitivity. PMID:29735761
A novel USP9X substrate TTK contributes to tumorigenesis in non-small-cell lung cancer. PMID:29721084
Proteomic alterations in early stage cervical cancer. PMID:29719595
Click Chemistry-mediated Biotinylation Reveals a Function for the Protease BACE1 in Modulating the Neuronal Surface Glycoproteome. PMID:29716987
Nucleolar-nucleoplasmic shuttling of TARG1 and its control by DNA damage-induced poly-ADP-ribosylation and by nucleolar transcription. PMID:29712969
Enhancement of red blood cell transfusion compatibility using CRISPR-mediated erythroblast gene editing. PMID:29700043
New perspectives: systems medicine in cardiovascular disease. PMID:29699591
Metaproteogenomic Profiling of Microbial Communities Colonizing Actively Venting Hydrothermal Chimneys. PMID:29696004
SILAC-based phosphoproteomics reveals new PP2A-Cdc55-regulated processes in budding yeast. PMID:29688323
The exon-intron gene structure upstream of the initiation codon predicts translation efficiency. PMID:29684192
The response to neoadjuvant chemoradiotherapy with 5-fluorouracil in locally advanced rectal cancer patients: a predictive proteomic signature. PMID:29681787
Proteome-wide analysis of cysteine oxidation reveals metabolic sensitivity to redox stress. PMID:29679077
FSPP: A Tool for Genome-Wide Prediction of smORF-Encoded Peptides and Their Functions. PMID:29675032
Clostridium sordellii outer spore proteins maintain spore structural integrity and promote bacterial clearance from the gastrointestinal tract. PMID:29668758
Phosphoproteomic insights into processes influenced by the kinase-like protein DIA1/C3orf58. PMID:29666759
Integrated Transcriptomic and Proteomic Analyses Suggest the Participation of Endogenous Protease Inhibitors in the Regulation of Protease Gene Expression in Helicoverpa armigera. PMID:29661852
Development of a Prototype System for Archiving Integrative/Hybrid Structure Models of Biological Macromolecules. PMID:29657133
Optimizing Recombinant Protein Production in the Escherichia coli Periplasm Alleviates Stress. PMID:29654183
Proteomic profiling of human cancer pseudopodia for the identification of anti-metastatic drug candidates. PMID:29643415
A Cost-Effective High-Throughput Plasma and Serum Proteomics Workflow Enables Mapping of the Molecular Impact of Total Pancreatectomy with Islet Autotransplantation. PMID:29641209
Identification of potential urine proteins and microRNA biomarkers for the diagnosis of pulmonary tuberculosis patients. PMID:29636444
Cross-talk between monocyte invasion and astrocyte proliferation regulates scarring in brain injury. PMID:29632244
The Use of CRISPR/Cas9 Gene Editing to Confirm Congenic Contaminations in Host-Pathogen Interaction Studies. PMID:29616197
The impact of circulating preeclampsia-associated extracellular vesicles on the migratory activity and phenotype of THP-1 monocytic cells. PMID:29615814
CRISPR/Cas9-mediated Genomic Editing of Cluap1/IFT38 Reveals a New Role in Actin Arrangement. PMID:29615496
Software for Peak Finding and Elemental Composition Assignment for Glycosaminoglycan Tandem Mass Spectra. PMID:29615495
Proline hydroxylation in collagen supports integrin binding by two distinct mechanisms. PMID:29615493
Lipid accumulation in human breast cancer cells injured by iron depletors. PMID:29615075
Identification of long-lived synaptic proteins by proteomic analysis of synaptosome protein turnover. PMID:29610302
Targeted Proteomics Guided by Label-free Quantitative Proteome Analysis in Saliva Reveal Transition Signatures from Health to Periodontal Disease. PMID:29610270
Comparison of protein expression between human livers and the hepatic cell lines HepG2, Hep3B, and Huh7 using SWATH and MRM-HR proteomics: Focusing on drug-metabolizing enzymes. PMID:29610054
Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics. PMID:29608554
iTRAQ-based quantitative proteomic analysis reveals the lateral meristem developmental mechanism for branched spike development in tetraploid wheat (Triticum turgidum L.). PMID:29606089
Involvement of serum-derived exosomes of elderly patients with bone loss in failure of bone remodeling via alteration of exosomal bone-related proteins. PMID:29603567
Extracellular Vesicle Subtypes Released From Activated or Apoptotic T-Lymphocytes Carry a Specific and Stimulus-Dependent Protein Cargo. PMID:29599781
Quantitative N-glycoproteomics reveals altered glycosylation levels of various plasma proteins in bloodstream infected patients. PMID:29596458
Discovery and Characterization of ZUFSP/ZUP1, a Distinct Deubiquitinase Class Important for Genome Stability. PMID:29576527
Characterization of the adult Aedes aegypti early midgut peritrophic matrix proteome using LC-MS. PMID:29570734
Quantitative mass spectrometry analysis reveals a panel of nine proteins as diagnostic markers for colon adenocarcinomas. PMID:29568375
Early Cold-Induced Peroxidases and Aquaporins Are Associated With High Cold Tolerance in Dajiao (Musa spp. 'Dajiao'). PMID:29568304
Multiple mechanisms drive phage infection efficiency in nearly identical hosts. PMID:29568113
Proteomic characterization of fresh spermatozoa and supernatant after cryopreservation in relation to freezability of carp (Cyprinus carpio L) semen. PMID:29565997
Mapping in vivo target interaction profiles of covalent inhibitors using chemical proteomics with label-free quantification. PMID:29565900
Angiogenic and Immunologic Proteins Identified by Deep Proteomic Profiling of Human Retinal and Choroidal Vascular Endothelial Cells: Potential Targets for New Biologic Drugs. PMID:29559410
Multiplex Fluorescent, Activity-Based Protein Profiling Identifies Active α-Glycosidases and Other Hydrolases in Plants. PMID:29555787
Rb interactome data and its modulations during cell cycle progression in HEK 293 cells. PMID:29552609
Integrated analysis of fine-needle-aspiration cystic fluid proteome, cancer cell secretome, and public transcriptome datasets for papillary thyroid cancer biomarker discovery. PMID:29552294
Identification of Novel Physiological Substrates of Mycobacterium bovis BCG Protein Kinase G (PknG) by Label-free Quantitative Phosphoproteomics. PMID:29549130
CDK and MAPK Synergistically Regulate Signaling Dynamics via a Shared Multi-site Phosphorylation Region on the Scaffold Protein Ste5. PMID:29547722
Comparison of secretome from osteoblasts derived from sclerotic versus non-sclerotic subchondral bone in OA: A pilot study. PMID:29547667
Proteomics-based insights into mitogen-activated protein kinase inhibitor resistance of cerebral melanoma metastases. PMID:29541007
Benchmarking common quantification strategies for large-scale phosphoproteomics. PMID:29535314
NuRD and CAF-1-mediated silencing of the D4Z4 array is modulated by DUX4-induced MBD3L proteins. PMID:29533181
Protein composition of catalytically active U7-dependent processing complexes assembled on histone pre-mRNA containing biotin and a photo-cleavable linker. PMID:29529248
Reproducible proteomics sample preparation for single FFPE tissue slices using acid-labile surfactant and direct trypsinization. PMID:29527141
Proteomic characterization of high-density lipoprotein particles in patients with non-alcoholic fatty liver disease. PMID:29527140
Protease Activities Triggered by Ralstonia solanacearum Infection in Susceptible and Tolerant Tomato Lines. PMID:29523767
MARCH6 and TRC8 facilitate the quality control of cytosolic and tail-anchored proteins. PMID:29519897
Interactome Analysis Reveals Regulator of G Protein Signaling 14 (RGS14) is a Novel Calcium/Calmodulin (Ca2+/CaM) and CaM Kinase II (CaMKII) Binding Partner. PMID:29518331
Three unrelated protease inhibitors enhance accumulation of pharmaceutical recombinant proteins in Nicotiana benthamiana. PMID:29509983
Quantitative mapping of RNA-mediated nuclear estrogen receptor β interactome in human breast cancer cells. PMID:29509190
Proteomics of Aspergillus fumigatus Conidia-containing Phagolysosomes Identifies Processes Governing Immune Evasion. PMID:29507050
SWATH mass spectrometry as a tool for quantitative profiling of the matrisome. PMID:29501709
STRENDA DB: enabling the validation and sharing of enzyme kinetics data. PMID:29498804
Proteomic Analysis of Kiwifruit in Response to the Postharvest Pathogen, Botrytis cinerea. PMID:29497428
The use of SWATH to analyse the dynamic changes of bacterial proteome of carbapanemase-producing Escherichia coli under antibiotic pressure. PMID:29497067
Phosphoproteomics Analysis Identifies Novel Candidate Substrates of the Nonreceptor Tyrosine Kinase, Src-related Kinase Lacking C-terminal Regulatory Tyrosine and N-terminal Myristoylation Sites (SRMS). PMID:29496907
Comprehensive Redox Profiling of the Thiol Proteome of Clostridium difficile. PMID:29496906
Vitamin C alters the amount of specific endoplasmic reticulum associated proteins involved in lipid metabolism in the liver of mice synthesizing a nonfunctional Werner syndrome (Wrn) mutant protein. PMID:29494634
T-Cell Immunopeptidomes Reveal Cell Subtype Surface Markers Derived From Intracellular Proteins. PMID:29493099
Nanodroplet processing platform for deep and quantitative proteome profiling of 10-100 mammalian cells. PMID:29491378
CD74 regulates complexity of tumor cell HLA class II peptidome in brain metastasis and is a positive prognostic marker for patient survival. PMID:29490700
PHLDA1 Mediates Drug Resistance in Receptor Tyrosine Kinase-Driven Cancer. PMID:29490281
The N-terminal domain of a tick evasin is critical for chemokine binding and neutralization and confers specific binding activity to other evasins. PMID:29487134
Two predominant MUPs, OBP3 and MUP13, are male pheromones in rats. PMID:29483934
Disentangling thermal stress responses in a reef-calcifier and its photosymbionts by shotgun proteomics. PMID:29476118
Strong cation exchange-reversed phase liquid chromatography-capillary zone electrophoresis-tandem mass spectrometry platform with high peak capacity for deep bottom-up proteomics. PMID:29475469
The MYO6 interactome reveals adaptor complexes coordinating early endosome and cytoskeletal dynamics. PMID:29467281
Proteomic analysis of the human retina reveals region-specific susceptibilities to metabolic- and oxidative stress-related diseases. PMID:29466423
Phenazines Regulate Nap-Dependent Denitrification in Pseudomonas aeruginosa Biofilms. PMID:29463605
Proteotranscriptomic Measurements of E6-Associated Protein (E6AP) Targets in DU145 Prostate Cancer Cells. PMID:29463595
Structural and compositional diversity of fibrillin microfibrils in human tissues. PMID:29453284
Establishment of Dimethyl Labeling-based Quantitative Acetylproteomics in Arabidopsis. PMID:29440448
Pilot Study on Mass Spectrometry-Based Analysis of the Proteome of CD34⁺CD123⁺ Progenitor Cells for the Identification of Potential Targets for Immunotherapy in Acute Myeloid Leukemia. PMID:29439554
Human Cervical Mucus Plugs Exhibit Insufficiencies in Antimicrobial Activity Towards Group B Streptococcus. PMID:29425317
Dynamics of venom composition across a complex life cycle. PMID:29424690
Systems Signatures Reveal Unique Remission-path of Type 2 Diabetes Following Roux-en-Y Gastric Bypass Surgery. PMID:29422288
Selective Photoaffinity Probe That Enables Assessment of Cannabinoid CB2 Receptor Expression and Ligand Engagement in Human Cells. PMID:29420021
Asparagine bioavailability governs metastasis in a model of breast cancer. PMID:29414946
Peptide Level Turnover Measurements Enable the Study of Proteoform Dynamics. PMID:29414762
Fungal Secretome Analysis via PepSAVI-MS: Identification of the Bioactive Peptide KP4 from Ustilago maydis. PMID:29404970
BioID Reveals Novel Proteins of the Plasmodium Parasitophorous Vacuole Membrane. PMID:29404413
Mitochondrial CoQ deficiency is a common driver of mitochondrial oxidants and insulin resistance. PMID:29402381
The rolB plant oncogene affects multiple signaling protein modules related to hormone signaling and plant defense. PMID:29396465
Large-scale intact glycopeptide identification by Mascot database search. PMID:29391424
Integrated multi-omic analysis of host-microbiota interactions in acute oak decline. PMID:29378627
Development of a Photo-Cross-Linkable Diaminoquinazoline Inhibitor for Target Identification in Plasmodium falciparum. PMID:29377668
The Global Acetylome of the Human Pathogen Vibrio cholerae V52 Reveals Lysine Acetylation of Major Transcriptional Regulators. PMID:29376036
Quantitative Proteomic Analysis of Four Developmental Stages of Saprolegnia parasitica. PMID:29375523
Identification of a Golgi GPI-N-acetylgalactosamine transferase with tandem transmembrane regions in the catalytic domain. PMID:29374258
Tissue-specific changes in apoplastic proteins and cell wall structure during cold acclimation of winter wheat crowns. PMID:29373702
Protein Tyrosine Phosphatase Receptor Type G (PTPRG) Controls Fibroblast Growth Factor Receptor (FGFR) 1 Activity and Influences Sensitivity to FGFR Kinase Inhibitors. PMID:29371290
N-glycome of the Lysosomal Glycocalyx is Altered in Niemann-Pick Type C Disease (NPC) Model Cells. PMID:29367433
Homeolog expression analysis in an allotriploid non-model crop via integration of transcriptomics and proteomics. PMID:29358676
Temporal Effects of Combined Birinapant and Paclitaxel on Pancreatic Cancer Cells Investigated via Large-Scale, Ion-Current-Based Quantitative Proteomics (IonStar). PMID:29358341
Quantitative Proteomics After Spinal Cord Injury (SCI) in a Regenerative and a Nonregenerative Stage in the Frog Xenopus laevis. PMID:29358338
Compartmentalization of HP1 Proteins in Pluripotency Acquisition and Maintenance. PMID:29358085
Proteomic Dissection of Nanotopography-Sensitive Mechanotransductive Signaling Hubs that Foster Neuronal Differentiation in PC12 Cells. PMID:29354032
Mapping and Quantification of Over 2000 O-linked Glycopeptides in Activated Human T Cells with Isotope-Targeted Glycoproteomics (Isotag). PMID:29351928
The RIG-I-like receptor LGP2 inhibits Dicer-dependent processing of long double-stranded RNA and blocks RNA interference in mammalian cells. PMID:29351913
The Role of Cadaverine Synthesis on Pneumococcal Capsule and Protein Expression. PMID:29351189
T lymphocytes facilitate brain metastasis of breast cancer by inducing Guanylate-Binding Protein 1 expression. PMID:29350274
The deep-subsurface sulfate reducer Desulfotomaculum kuznetsovii employs two methanol-degrading pathways. PMID:29339722
Mapping protein interactions of sodium channel NaV1.7 using epitope-tagged gene-targeted mice. PMID:29335280
Proteome-Wide Characterization of Phosphorylation-Induced Conformational Changes in Breast Cancer. PMID:29332387
Systematic quantitative analysis of H2A and H2B variants by targeted proteomics. PMID:29329550
Retrovirus-like Gag Protein Arc1 Binds RNA and Traffics across Synaptic Boutons. PMID:29328915
Combinatorial Omics Analysis Reveals Perturbed Lysosomal Homeostasis in Collagen VII-deficient Keratinocytes. PMID:29326176
Splicing of platelet resident pre-mRNAs upon activation by physiological stimuli results in functionally relevant proteome modifications. PMID:29323256
Omics Assisted N-terminal Proteoform and Protein Expression Profiling On Methionine Aminopeptidase 1 (MetAP1) Deletion. PMID:29317475
Linking FOXO3, NCOA3, and TCF7L2 to Ras pathway phenotypes through a genome-wide forward genetic screen in human colorectal cancer cells. PMID:29301589
Characterizing the O-glycosylation landscape of human plasma, platelets, and endothelial cells. PMID:29296958
Advanced aging causes diaphragm functional abnormalities, global proteome remodeling, and loss of mitochondrial cysteine redox flexibility in mice. PMID:29289553
Exploring the molecular complexity of Triatoma dimidiata sialome. PMID:29288089
Intake of Fish Oil Specifically Modulates Colonic Muc2 Expression in Middle-Aged Rats by Suppressing the Glycosylation Process. PMID:29277971
Bifidobacteria or Fiber Protects against Diet-Induced Microbiota-Mediated Colonic Mucus Deterioration. PMID:29276171
Identification of a precursor processing protease from the spider Cupiennius salei essential for venom neurotoxin maturation. PMID:29269415
Multi-Omic Biogeography of the Gastrointestinal Microbiota of a Pre-Weaned Lamb. PMID:29258228
Biotinylation by antibody recognition-a method for proximity labeling. PMID:29256494
On the Reproducibility of Label-Free Quantitative Cross-Linking/Mass Spectrometry. PMID:29256016
RNA degradation by the plant RNA exosome involves both phosphorolytic and hydrolytic activities. PMID:29255150
Rice Paddy Nitrospirae Carry and Express Genes Related to Sulfate Respiration: Proposal of the New Genus "Candidatus Sulfobium". PMID:29247059
Proteome profiling of clear cell renal cell carcinoma in von Hippel-Lindau patients highlights upregulation of Xaa-Pro aminopeptidase-1, an anti-proliferative and anti-migratory exoprotease. PMID:29245961
In-depth PtdIns(3,4,5)P3 signalosome analysis identifies DAPP1 as a negative regulator of GPVI-driven platelet function. PMID:29242851
CHIP Regulates Aquaporin-2 Quality Control and Body Water Homeostasis. PMID:29242247
Proteome-wide Analysis of Lysine 2-hydroxyisobutyrylation in Developing Rice (Oryza sativa) Seeds. PMID:29235492
Proteomic analyses identify ARH3 as a serine mono-ADP-ribosylhydrolase. PMID:29234005
Temporal Proteomics of Inducible RNAi Lines of Clp Protease Subunits Identifies Putative Protease Substrates. PMID:29229697
Systems Pharmacology Dissection of Cholesterol Regulation Reveals Determinants of Large Pharmacodynamic Variability between Cell Lines. PMID:29226804
ELMOD1 Stimulates ARF6-GTP Hydrolysis to Stabilize Apical Structures in Developing Vestibular Hair Cells. PMID:29222402
The interactome of intact mitochondria by cross-linking mass spectrometry provides evidence for coexisting respiratory supercomplexes. PMID:29222160
Lipopolysaccharide Upregulates Palmitoylated Enzymes of the Phosphatidylinositol Cycle: An Insight from Proteomic Studies. PMID:29217618
Proteomics and antivenomics of Echis carinatus carinatus venom: Correlation with pharmacological properties and pathophysiology of envenomation. PMID:29215036
Rhizobium Impacts on Seed Productivity, Quality, and Protection of Pisum sativum upon Disease Stress Caused by Didymella pinodes: Phenotypic, Proteomic, and Metabolomic Traits. PMID:29204150
Selected reaction monitoring approach for validating peptide biomarkers. PMID:29203663
Multiplex quantitative SILAC for analysis of archaeal proteomes: a case study of oxidative stress responses. PMID:29194950
Landscape of the regulatory elements for lysine 2-hydroxyisobutyrylation pathway. PMID:29192674
Unbiased Quantitative Proteomics Reveals a Crucial Role of the Allergen Context for the Activation of Human Dendritic Cells. PMID:29192156
MS Western, a Method of Multiplexed Absolute Protein Quantification is a Practical Alternative to Western Blotting. PMID:29192002
Post-translational regulation of metabolism in fumarate hydratase deficient cancer cells. PMID:29191787
Proteomic analysis of lung metastases in a murine breast cancer model reveals divergent influence of CTSB and CTSL overexpression. PMID:29187882
Nbeal2 interacts with Dock7, Sec16a, and Vac14. PMID:29187380
A multiregional proteomic survey of the postnatal human brain. PMID:29184206
A meta-proteomics approach to study the interspecies interactions affecting microbial biofilm development in a model community. PMID:29184101
Proteomics of phosphorylation and protein dynamics during fertilization and meiotic exit in the Xenopus egg. PMID:29183978
Spectral Library Based Analysis of Arginine Phosphorylations in Staphylococcus aureus. PMID:29183913
N-terminomics reveals control of Arabidopsis seed storage proteins and proteases by the Arg/N-end rule pathway. PMID:29168982
MAPKs Influence Pollen Tube Growth by Controlling the Formation of Phosphatidylinositol 4,5-Bisphosphate in an Apical Plasma Membrane Domain. PMID:29167320
Identification and Validation of a Salivary Protein Panel to Detect Heart Failure Early. PMID:29158831
Assessing species biomass contributions in microbial communities via metaproteomics. PMID:29146960
Characterization of Detergent Insoluble Proteome in Chronic Traumatic Encephalopathy. PMID:29145658
Scrambled eggs: Proteomic portraits and novel biomarkers of egg quality in zebrafish (Danio rerio). PMID:29145436
Epstein-Barr Virus Protein EB2 Stimulates Translation Initiation of mRNAs through Direct Interactions with both Poly(A)-Binding Protein and Eukaryotic Initiation Factor 4G. PMID:29142127
The Ndc80 complex targets Bod1 to human mitotic kinetochores. PMID:29142109
A Proteomic Approach to Investigate the Drought Response in the Orphan Crop Eragrostis tef. PMID:29140297
Differential Content of Proteins, mRNAs, and miRNAs Suggests that MDSC and Their Exosomes May Mediate Distinct Immune Suppressive Functions. PMID:29139296
The Small Heat Shock Protein α-Crystallin B Shows Neuroprotective Properties in a Glaucoma Animal Model. PMID:29135941
Comparative Analyses of Data Independent Acquisition Mass Spectrometric Approaches: DIA, WiSIM-DIA, and Untargeted DIA. PMID:29134766
The food-borne pathogen Campylobacter jejuni responds to the bile salt deoxycholate with countermeasures to reactive oxygen species. PMID:29133896
Spatially-Resolved Top-down Proteomics Bridged to MALDI MS Imaging Reveals the Molecular Physiome of Brain Regions. PMID:29122912
RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. PMID:29117863
Proteomic profiling of TGFBI-null mouse corneas reveals only minor changes in matrix composition supportive of TGFBI knockdown as therapy against TGFBI-linked corneal dystrophies. PMID:29117645
Improved Prediction of Bovine Leucocyte Antigens (BoLA) Presented Ligands by Use of Mass-Spectrometry-Determined Ligand and in Vitro Binding Data. PMID:29115832
Vanillin Promotes the Germination of Antrodia camphorata Arthroconidia through PKA and MAPK Signaling Pathways. PMID:29109709
ProteomicsDB. PMID:29106664
Pharmacoproteomic characterisation of human colon and rectal cancer. PMID:29101300
INA complex liaises the F1Fo-ATP synthase membrane motor modules. PMID:29093463
The immunopeptidomic landscape of ovarian carcinomas. PMID:29093164
RNA sequencing and proteomics approaches reveal novel deficits in the cortex of Mecp2-deficient mice, a model for Rett syndrome. PMID:29090078
A compendium of multi-omic sequence information from the Saanich Inlet water column. PMID:29087368
Integrated Proteomic and Transcriptomic Analysis Reveals Long Noncoding RNA HOX Transcript Antisense Intergenic RNA (HOTAIR) Promotes Hepatocellular Carcinoma Cell Proliferation by Regulating Opioid Growth Factor Receptor (OGFr). PMID:29079719
Increased serotransferrin and ceruloplasmin turnover in diet-controlled patients with type 2 diabetes. PMID:29079528
Dietary changes in nutritional studies shape the structural and functional composition of the pigs' fecal microbiome-from days to weeks. PMID:29078812
Affinity proteomics reveals extensive phosphorylation of the Brassica chromosome axis protein ASY1 and a network of associated proteins at prophase I of meiosis. PMID:29078019
Remodeling of the Streptococcus mutans proteome in response to LrgAB and external stresses. PMID:29070798
Bivalent complexes of PRC1 with orthologs of BRD4 and MOZ/MORF target developmental genes in Drosophila. PMID:29070704
Optimization of Experimental Parameters in Data-Independent Mass Spectrometry Significantly Increases Depth and Reproducibility of Results. PMID:29070702
The BioStudies database-one stop shop for all data supporting a life sciences study. PMID:29069414
Selective Proteomic Analysis of Antibiotic-Tolerant Cellular Subpopulations in Pseudomonas aeruginosa Biofilms. PMID:29066549
Single-Shot Top-Down Proteomics with Capillary Zone Electrophoresis-Electrospray Ionization-Tandem Mass Spectrometry for Identification of Nearly 600 Escherichia coli Proteoforms. PMID:29064224
Gel-based and gel-free proteome data associated with controlled deterioration treatment of Glycine max seeds. PMID:29062869
A short linear motif in scaffold Nup145C connects Y-complex with pre-assembled outer ring Nup82 complex. PMID:29062044
PKM2 methylation by CARM1 activates aerobic glycolysis to promote tumorigenesis. PMID:29058718
The transcriptome, extracellular proteome and active secretome of agroinfiltrated Nicotiana benthamiana uncover a large, diverse protease repertoire. PMID:29055088
Comprehensive profiling of lysine ubiquitome reveals diverse functions of lysine ubiquitination in common wheat. PMID:29051560
Complement Activation in Peritoneal Dialysis-Induced Arteriolopathy. PMID:29046343
The online Tabloid Proteome: an annotated database of protein associations. PMID:29040688
Analyzing the Complex Regulatory Landscape of Hfq - an Integrative, Multi-Omics Approach. PMID:29033902
RBPJ/CBF1 interacts with L3MBTL3/MBT1 to promote repression of Notch signaling via histone demethylase KDM1A/LSD1. PMID:29030483
Proteomic landscape of the primary somatosensory cortex upon sensory deprivation. PMID:29020746
Systematic Identification of Mycobacterium tuberculosis Effectors Reveals that BfrB Suppresses Innate Immunity. PMID:29018126
Phosphoproteomics Reveals Regulatory T Cell-Mediated DEF6 Dephosphorylation That Affects Cytokine Expression in Human Conventional T Cells. PMID:28993769
Temporal expression profiling of plasma proteins reveals oxidative stress in early stages of Type 1 Diabetes progression. PMID:28993202
Persulfidation proteome reveals the regulation of protein function by hydrogen sulfide in diverse biological processes in Arabidopsis. PMID:28992305
The SysteMHC Atlas project. PMID:28985418
MSP22.8 is a protease inhibitor-like protein involved in shell mineralization in the edible mussel Mytilus galloprovincialis. PMID:28979842
Selective aggregation of the splicing factor Hsh155 suppresses splicing upon genotoxic stress. PMID:28978642
Calcineurin-mediated Dephosphorylation of Acetyl-coA Carboxylase is Required for Pheromone Biosynthesis Activating Neuropeptide (PBAN)-induced Sex Pheromone Biosynthesis in Helicoverpa armigera. PMID:28978618
Modulation of proteostasis counteracts oxidative stress and affects DNA base excision repair capacity in ATM-deficient cells. PMID:28973444
MAZ induces MYB expression during the exit from quiescence via the E2F site in the MYB promoter. PMID:28973440
Quantitative proteomics reveals that long non-coding RNA MALAT1 interacts with DBC1 to regulate p53 acetylation. PMID:28973437
Enhanced Missing Proteins Detection in NCI60 Cell Lines Using an Integrative Search Engine Approach. PMID:28960077
Lipid Metabolic Versatility in Malassezia spp. Yeasts Studied through Metabolic Modeling. PMID:28959251
Converging Small Ubiquitin-like Modifier (SUMO) and Ubiquitin Signaling: Improved Methodology Identifies Co-modified Target Proteins. PMID:28951443
Ubiquilin1 promotes antigen-receptor mediated proliferation by eliminating mislocalized mitochondrial proteins. PMID:28933694
Phosphoproteome-based kinase activity profiling reveals the critical role of MAP2K2 and PLK1 in neuronal autophagy. PMID:28933595
Global Proteomics Revealed Klebsiella pneumoniae Induced Autophagy and Oxidative Stress in Caenorhabditis elegans by Inhibiting PI3K/AKT/mTOR Pathway during Infection. PMID:28932706
Global proteomic profiling of Yersinia ruckeri strains. PMID:28931430
The autophagy initiator ULK1 sensitizes AMPK to allosteric drugs. PMID:28924239
Metabolic crosstalk regulates Porphyromonas gingivalis colonization and virulence during oral polymicrobial infection. PMID:28924191
Nε- and O-Acetylation in Mycobacterium tuberculosis Lineage 7 and Lineage 4 Strains: Proteins Involved in Bioenergetics, Virulence, and Antimicrobial Resistance Are Acetylated. PMID:28920697
A Linear Diubiquitin-Based Probe for Efficient and Selective Detection of the Deubiquitinating Enzyme OTULIN. PMID:28919039
RSK2 is a new Pim2 target with pro-survival functions in FLT3-ITD-positive acute myeloid leukemia. PMID:28914261
A druggable secretory protein maturase of Toxoplasma essential for invasion and egress. PMID:28898199
Lysine acetylation stoichiometry and proteomics analyses reveal pathways regulated by sirtuin 1 in human cells. PMID:28893905
Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. PMID:28887381
Estrogenic regulation of skeletal muscle proteome: a study of premenopausal women and postmenopausal MZ cotwins discordant for hormonal therapy. PMID:28884514
A Structural and Functional Elucidation of the Rumen Microbiome Influenced by Various Diets and Microenvironments. PMID:28883813
Quantitative proteomics of Sf21 cells during Baculovirus infection reveals progressive host proteome changes and its regulation by viral miRNA. PMID:28883418
Proline-dependent and basophilic kinases phosphorylate human TRPC6 at serine 14 to control channel activity through increased membrane expression. PMID:28877958
Proteome Analysis of Hypoxic Glioblastoma Cells Reveals Sequential Metabolic Adaptation of One-Carbon Metabolic Pathways. PMID:28874504
Transcriptome analysis of the response of Burmese python to digestion. PMID:28873961
The genomic landscape of human cellular circadian variation points to a novel role for the signalosome. PMID:28869038
IgSF21 promotes differentiation of inhibitory synapses via binding to neurexin2α. PMID:28864826
Topological N-glycosylation and site-specific N-glycan sulfation of influenza proteins in the highly expressed H1N1 candidate vaccines. PMID:28860626
The bacterial arginine glycosyltransferase effector NleB preferentially modifies Fas-associated death domain protein (FADD). PMID:28860194
New Genes and Functional Innovation in Mammals. PMID:28854603
Protein abundances can distinguish between naturally-occurring and laboratory strains of Yersinia pestis, the causative agent of plague. PMID:28854255
Proteomics Standards Initiative: Fifteen Years of Progress and Future Work. PMID:28849660
A heterochromatin-dependent transcription machinery drives piRNA expression. PMID:28847004
Quantitative phosphoproteomic analysis of acquired cancer drug resistance to pazopanib and dasatinib. PMID:28842319
Quantitative proteomic characterization of lung-MSC and bone marrow-MSC using DIA-mass spectrometry. PMID:28839187
Contrasting effects of copper limitation on the photosynthetic apparatus in two strains of the open ocean diatom Thalassiosira oceanica. PMID:28837661
Pervasive coexpression of spatially proximal genes is buffered at the protein level. PMID:28835372
Time-course global proteome analyses reveal an inverse correlation between Aβ burden and immunoglobulin M levels in the APPNL-F mouse model of Alzheimer disease. PMID:28832675
Cardiac Metabolic Deregulation Induced by the Tyrosine Kinase Receptor Inhibitor Sunitinib is rescued by Endothelin Receptor Antagonism. PMID:28824714
Proteomic Response of Pseudomonas aeruginosa PAO1 Adhering to Solid Surfaces. PMID:28824592
A Simple Light Isotope Metabolic Labeling (SLIM-labeling) Strategy: A Powerful Tool to Address the Dynamics of Proteome Variations In Vivo. PMID:28821603
A Microsomal Proteomics View of H₂O₂- and ABA-Dependent Responses. PMID:28820483
Landscape of submitochondrial protein distribution. PMID:28819139
Delayed effects of transcriptional responses in Mycobacterium tuberculosis exposed to nitric oxide suggest other mechanisms involved in survival. PMID:28811595
iTRAQ and virus-induced gene silencing revealed three proteins involved in cold response in bread wheat. PMID:28790462
Direct Identification of Functional Amyloid Proteins by Label-Free Quantitative Mass Spectrometry. PMID:28777328
Dynamic Acclimation to High Light in Arabidopsis thaliana Involves Widespread Reengineering of the Leaf Proteome. PMID:28775726
UBE2O remodels the proteome during terminal erythroid differentiation. PMID:28774900
Quantitative Temporal in Vivo Proteomics Deciphers the Transition of Virus-Driven Myeloid Cells into M2 Macrophages. PMID:28768414
Quantitative Proteomics of Cerebrospinal Fluid in Paediatric Pneumococcal Meningitis. PMID:28765563
Identification of Differentially Expressed Splice Variants by the Proteogenomic Pipeline Splicify. PMID:28747380
Glycolytic Enzymes Coalesce in G Bodies under Hypoxic Stress. PMID:28746874
MEIS homeodomain proteins facilitate PARP1/ARTD1-mediated eviction of histone H1. PMID:28739678
Structural insights into transcription initiation by yeast RNA polymerase I. PMID:28739580
Proteomic profiling of early degenerative retina of RCS rats. PMID:28730077
The nuclear proteome of Trypanosoma brucei. PMID:28727848
N-Degradomic Analysis Reveals a Proteolytic Network Processing the Podocyte Cytoskeleton. PMID:28724775
A community proposal to integrate proteomics activities in ELIXIR. PMID:28713550
Outer Membrane Proteome of Veillonella parvula: A Diderm Firmicute of the Human Microbiome. PMID:28713344
Synaptic Interactome Mining Reveals p140Cap as a New Hub for PSD Proteins Involved in Psychiatric and Neurological Disorders. PMID:28713243
The ciliary membrane-associated proteome reveals actin-binding proteins as key components of cilia. PMID:28710093
Potential and active functions in the gut microbiota of a healthy human cohort. PMID:28709472
Synaptic GAP and GEF Complexes Cluster Proteins Essential for GTP Signaling. PMID:28706196
A Cell Wall Proteome and Targeted Cell Wall Analyses Provide Novel Information on Hemicellulose Metabolism in Flax. PMID:28706005
Feedback Microtubule Control and Microtubule-Actin Cross-talk in Arabidopsis Revealed by Integrative Proteomic and Cell Biology Analysis of KATANIN 1 Mutants. PMID:28706004
Combination of Metabolomic and Proteomic Analysis Revealed Different Features among Lactobacillus delbrueckii Subspecies bulgaricus and lactis Strains While In Vivo Testing in the Model Organism Caenorhabditis elegans Highlighted Probiotic Properties. PMID:28702021
Integrated analysis of zone-specific protein and metabolite profiles within nitrogen-fixing Medicago truncatula-Sinorhizobium medicae nodules. PMID:28700717
Reduced Protein Expression in a Virus Attenuated by Codon Deoptimization. PMID:28698233
Spatiotemporal Proteomic Profiling of Human Cerebral Development. PMID:28687556
Metaproteomics reveals functional differences in intestinal microbiota development of preterm infants. PMID:28684633
Proteomic profiling of archaeological human bone. PMID:28680659
HIF prolyl hydroxylase PHD3 regulates translational machinery and glucose metabolism in clear cell renal cell carcinoma. PMID:28680592
Sec61 blockade by mycolactone inhibits antigen cross-presentation independently of endosome-to-cytosol export. PMID:28679634
Characterization of the Extracellular Matrix of Normal and Diseased Tissues Using Proteomics. PMID:28675934
Targeted Feature Detection for Data-Dependent Shotgun Proteomics. PMID:28673088
Mechanism Investigation of Rifampicin-Induced Liver Injury Using Comparative Toxicoproteomics in Mice. PMID:28671602
Translating Divergent Environmental Stresses into a Common Proteome Response through the Histidine Kinase 33 (Hik33) in a Model Cyanobacterium. PMID:28668777
Autologous chondrocyte implantation-derived synovial fluids display distinct responder and non-responder proteomic profiles. PMID:28666451
METTL21B Is a Novel Human Lysine Methyltransferase of Translation Elongation Factor 1A: Discovery by CRISPR/Cas9 Knockout. PMID:28663172
Comparative genetic, proteomic and phosphoproteomic analysis of C. elegans embryos with a focus on ham-1/STOX and pig-1/MELK in dopaminergic neuron development. PMID:28659600
Definition of a High-Confidence Mitochondrial Proteome at Quantitative Scale. PMID:28658629
β-catenin downregulates Dicer to promote ovarian cancer metastasis. PMID:28650464
Structural and regulatory diversity shape HLA-C protein expression levels. PMID:28649982
A PLC-γ1 Feedback Pathway Regulates Lck Substrate Phosphorylation at the T-Cell Receptor and SLP-76 Complex. PMID:28644030
Insufficient antibody validation challenges oestrogen receptor beta research. PMID:28643774
Proteomic analysis reveals large amounts of decomposition enzymes and major metabolic pathways involved in algicidal process of Trametes versicolor F21a. PMID:28634367
Oral squamous cell carcinoma patients can be differentiated from healthy individuals with label-free serum proteomics. PMID:28632724
TCTE1 is a conserved component of the dynein regulatory complex and is required for motility and metabolism in mouse spermatozoa. PMID:28630322
Combined Mass Spectrometry Imaging and Top-down Microproteomics Reveals Evidence of a Hidden Proteome in Ovarian Cancer. PMID:28629911
Proteomic Analysis of Lipid Droplets from Arabidopsis Aging Leaves Brings New Insight into Their Biogenesis and Functions. PMID:28611809
CMG2/ANTXR2 regulates extracellular collagen VI which accumulates in hyaline fibromatosis syndrome. PMID:28604699
Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS. PMID:28604659
Variation in auxin sensing guides AUX/IAA transcriptional repressor ubiquitylation and destruction. PMID:28589936
Immune signatures of pathogenesis in the peritoneal compartment during early infection of sheep with Fasciola hepatica. PMID:28584245
Proteomic composition and immunomodulatory properties of urinary bladder matrix scaffolds in homeostasis and injury. PMID:28583764
Proteome-wide profiling of protein lysine acetylation in Aspergillus flavus. PMID:28582408
Ndfip1 restricts mTORC1 signalling and glycolysis in regulatory T cells to prevent autoinflammatory disease. PMID:28580955
Alternative splicing shapes transcriptome but not proteome diversity in Physcomitrella patens. PMID:28578384
Proteome-wide Identification of Glycosylation-dependent Interactors of Galectin-1 and Galectin-3 on Mesenchymal Retinal Pigment Epithelial (RPE) Cells. PMID:28576849
A Class of Environmental and Endogenous Toxins Induces BRCA2 Haploinsufficiency and Genome Instability. PMID:28575672
Monitoring of the spatial and temporal dynamics of BER/SSBR pathway proteins, including MYH, UNG2, MPG, NTH1 and NEIL1-3, during DNA replication. PMID:28575236
Comparative proteomic profiling of the serum differentiates pancreatic cancer from chronic pancreatitis. PMID:28573829
WIPI3 and WIPI4 β-propellers are scaffolds for LKB1-AMPK-TSC signalling circuits in the control of autophagy. PMID:28561066
Bypass of Activation Loop Phosphorylation by Aspartate 836 in Activation of the Endoribonuclease Activity of Ire1. PMID:28559428
A parts list for fungal cellulosomes revealed by comparative genomics. PMID:28555641
A systematic genomic screen implicates nucleocytoplasmic transport and membrane growth in nuclear size control. PMID:28545058
Proteomic analysis of the phycobiliprotein antenna of the cryptophyte alga Guillardia theta cultured under different light intensities. PMID:28540588
Quantitative Phospho-proteomic Analysis of TNFα/NFκB Signaling Reveals a Role for RIPK1 Phosphorylation in Suppressing Necrotic Cell Death. PMID:28539327
Systematic Evaluation of Protein Reduction and Alkylation Reveals Massive Unspecific Side Effects by Iodine-containing Reagents. PMID:28539326
Global mapping of CARM1 substrates defines enzyme specificity and substrate recognition. PMID:28537268
A comprehensive proteogenomic study of the human Brucella vaccine strain 104 M. PMID:28535754
Matrix Mechanosensing: From Scaling Concepts in 'Omics Data to Mechanisms in the Nucleus, Regeneration, and Cancer. PMID:28532215
In-Culture Cross-Linking of Bacterial Cells Reveals Large-Scale Dynamic Protein-Protein Interactions at the Peptide Level. PMID:28516784
A Temporal Proteomic Map of Epstein-Barr Virus Lytic Replication in B Cells. PMID:28514666
Host Plant Compatibility Shapes the Proteogenome of Frankia coriariae. PMID:28512450
Mammalian O-mannosylation of cadherins and plexins is independent of protein O-mannosyltransferases 1 and 2. PMID:28512129
ZBTB48 is both a vertebrate telomere-binding protein and a transcriptional activator. PMID:28500257
Large scale phosphoprotein profiling to explore Drosophila cold acclimation regulatory mechanisms. PMID:28490779
A microRNA-129-5p/Rbfox crosstalk coordinates homeostatic downscaling of excitatory synapses. PMID:28487411
Activation of the Amino Acid Response Pathway Blunts the Effects of Cardiac Stress. PMID:28487390
Charting organellar importomes by quantitative mass spectrometry. PMID:28485388
Expression proteomics study to determine metallodrug targets and optimal drug combinations. PMID:28484215
Unbiased Protein Association Study on the Public Human Proteome Reveals Biological Connections between Co-Occurring Protein Pairs. PMID:28480704
Mass spectrometry data from label-free quantitative proteomic analysis of harmless and pathogenic strains of infectious microalgae, Prototheca spp. PMID:28480323
Dominant protection from HLA-linked autoimmunity by antigen-specific regulatory T cells. PMID:28467828
A systematic approach for peptide characterization of B-cell receptor in chronic lymphocytic leukemia cells. PMID:28467808
Quantitative cardiac phosphoproteomics profiling during ischemia-reperfusion in an immature swine model. PMID:28455290
Validation, Identification, and Biological Consequences of the Site-specific O-GlcNAcylation Dynamics of Carbohydrate-responsive Element-binding Protein (ChREBP). PMID:28450420
N-terminal Proteomics Assisted Profiling of the Unexplored Translation Initiation Landscape in Arabidopsis thaliana. PMID:28432195
Comparative proteomic analysis of Neisseria meningitidis wildtype and dprA null mutant strains links DNA processing to pilus biogenesis. PMID:28431522
Salt stress induces changes in the proteomic profile of micropropagated sugarcane shoots. PMID:28419154
Quantitative analyses of the global proteome and phosphoproteome reveal the different impacts of propofol and dexmedetomidine on HT22 cells. PMID:28418008
Galectin-1 inhibition attenuates profibrotic signaling in hypoxia-induced pulmonary fibrosis. PMID:28417017
The Glial Cell-Derived Neurotrophic Factor (GDNF)-responsive Phosphoprotein Landscape Identifies Raptor Phosphorylation Required for Spermatogonial Progenitor Cell Proliferation. PMID:28408662
Global analysis of glycoproteins identifies markers of endotoxin tolerant monocytes and GPR84 as a modulator of TNFα expression. PMID:28404994
Dynamics of the Interaction between Cotton Bollworm Helicoverpa armigera and Nucleopolyhedrovirus as Revealed by Integrated Transcriptomic and Proteomic Analyses. PMID:28404795
Cytosine modifications modulate the chromatin architecture of transcriptional enhancers. PMID:28396520
Determining the bacterial cell biology of Planctomycetes. PMID:28393831
Complementary Metaproteomic Approaches to Assess the Bacterioplankton Response toward a Phytoplankton Spring Bloom in the Southern North Sea. PMID:28392779
An Approach to Spatiotemporally Resolve Protein Interaction Networks in Living Cells. PMID:28388416
Trade-off between Transcriptome Plasticity and Genome Evolution in Cephalopods. PMID:28388405
Protein interaction networks at the host-microbe interface in Diaphorina citri, the insect vector of the citrus greening pathogen. PMID:28386418
Intravitreal injection of β-crystallin B2 improves retinal ganglion cell survival in an experimental animal model of glaucoma. PMID:28384305
Comparative proteomics of Rhizopus delemar ATCC 20344 unravels the role of amino acid catabolism in fumarate accumulation. PMID:28382234
Proteogenomic Analysis Greatly Expands the Identification of Proteins Related to Reproduction in the Apogamous Fern Dryopteris affinis ssp. affinis. PMID:28382042
Phosphoproteome Profiling Reveals Circadian Clock Regulation of Posttranslational Modifications in the Murine Hippocampus. PMID:28382018
Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition. PMID:28381614
Vertex-Specific Proteins pUL17 and pUL25 Mechanically Reinforce Herpes Simplex Virus Capsids. PMID:28381566
Meioc maintains an extended meiotic prophase I in mice. PMID:28380054
Real-time iTRAQ-based proteome profiling revealed the central metabolism involved in nitrogen starvation induced lipid accumulation in microalgae. PMID:28378827
A Proteomic Approach to Identify Alterations in the Small Ubiquitin-like Modifier (SUMO) Network during Controlled Mechanical Ventilation in Rat Diaphragm Muscle. PMID:28373296
Proteomic analysis of protein purified derivative of Mycobacterium bovis. PMID:28372590
Changes in cellular signaling proteins in extracts from A549, H460, and U2OS cells treated with cisplatin or docetaxel. PMID:28367485
Ambra1 spatially regulates Src activity and Src/FAK-mediated cancer cell invasion via trafficking networks. PMID:28362576
Metaproteogenomics Reveals Taxonomic and Functional Changes between Cecal and Fecal Microbiota in Mouse. PMID:28352255
Exposure to atheroma-relevant 7-oxysterols causes proteomic alterations in cell death, cellular longevity, and lipid metabolism in THP-1 macrophages. PMID:28350877
Proteome dynamics during postnatal mouse corpus callosum development. PMID:28349996
Proteome Profiling of Wheat Shoots from Different Cultivars. PMID:28348574
Database-independent Protein Sequencing (DiPS) Enables Full-length de Novo Protein and Antibody Sequence Determination. PMID:28348172
PTENβ is an alternatively translated isoform of PTEN that regulates rDNA transcription. PMID:28332494
Orchestrating differential data access for translational research: a pilot implementation. PMID:28330491
Draft genome of the honey bee ectoparasitic mite, Tropilaelaps mercedesae, is shaped by the parasitic life history. PMID:28327890
Comprehensive proteomic characterization of stem cell-derived extracellular matrices. PMID:28327460
Extended Multiplexing of Tandem Mass Tags (TMT) Labeling Reveals Age and High Fat Diet Specific Proteome Changes in Mouse Epididymal Adipose Tissue. PMID:28325852
Internally tagged ubiquitin: a tool to identify linear polyubiquitin-modified proteins by mass spectrometry. PMID:28319114
Deciphering the Acute Cellular Phosphoproteome Response to Irradiation with X-rays, Protons and Carbon Ions. PMID:28302921
SPOP Mutation Drives Prostate Tumorigenesis In Vivo through Coordinate Regulation of PI3K/mTOR and AR Signaling. PMID:28292441
Glycoproteins in Claudin-Low Breast Cancer Cell Lines Have a Unique Expression Profile. PMID:28287265
Colistin Resistance in Acinetobacter baumannii MDR-ZJ06 Revealed by a Multiomics Approach. PMID:28275586
Identification of Proteins Interacting with Cytoplasmic High-Mobility Group Box 1 during the Hepatocellular Response to Ischemia Reperfusion Injury. PMID:28275217
Understanding Epstein-Barr Virus Life Cycle with Proteomics: A Temporal Analysis of Ubiquitination During Virus Reactivation. PMID:28271981
Temperature-Induced Remodeling of the Photosynthetic Machinery Tunes Photosynthesis in the Thermophilic Alga Cyanidioschyzon merolae. PMID:28270628
Mutations in mitochondrial DNA causing tubulointerstitial kidney disease. PMID:28267784
Quirks of Error Estimation in Cross-Linking/Mass Spectrometry. PMID:28267312
Human Immunoglobulin Heavy Gamma Chain Polymorphisms: Molecular Confirmation Of Proteomic Assessment. PMID:28265047
Proteomic Analysis of Post-synaptic Density Fractions from Shank3 Mutant Mice Reveals Brain Region Specific Changes Relevant to Autism Spectrum Disorder. PMID:28261056
DISMS2: A flexible algorithm for direct proteome- wide distance calculation of LC-MS/MS runs. PMID:28253837
Evolution of complexity in the zebrafish synapse proteome. PMID:28252024
Defining the Akt1 interactome data and delineating alterations in its composition as a function of cell cycle progression. PMID:28243621
Prophage WO genes recapitulate and enhance Wolbachia-induced cytoplasmic incompatibility. PMID:28241146
Proteome and Secretome Analysis Reveals Differential Post-transcriptional Regulation of Toll-like Receptor Responses. PMID:28235783
Toward an Optimized Workflow for Middle-Down Proteomics. PMID:28233997
CLK-dependent exon recognition and conjoined gene formation revealed with a novel small molecule inhibitor. PMID:28232751
Fatty acid synthase inhibits the O-GlcNAcase during oxidative stress. PMID:28232487
Characterisation of urinary WFDC12 in small nocturnal basal primates, mouse lemurs (Microcebus spp.). PMID:28225021
Methylated-antibody affinity purification to improve proteomic identification of plant RNA polymerase Pol V complex and the interacting proteins. PMID:28224978
Mapping Atheroprotective Functions and Related Proteins/Lipoproteins in Size Fractionated Human Plasma. PMID:28223350
Proteomic Analysis of Mitochondria-Enriched Fraction Isolated from the Frontal Cortex and Hippocampus of Apolipoprotein E Knockout Mice Treated with Alda-1, an Activator of Mitochondrial Aldehyde Dehydrogenase (ALDH2). PMID:28218653
Proteasome Activity Profiling Uncovers Alteration of Catalytic β2 and β5 Subunits of the Stress-Induced Proteasome during Salinity Stress in Tomato Roots. PMID:28217134
The Legionella pneumophila genome evolved to accommodate multiple regulatory mechanisms controlled by the CsrA-system. PMID:28212376
The use of urinary proteomics in the assessment of suitability of mouse models for ageing. PMID:28199320
The Human Leukocyte Antigen (HLA)-B27 Peptidome in Vivo, in Spondyloarthritis-susceptible HLA-B27 Transgenic Rats and the Effect of Erap1 Deletion. PMID:28188227
Control of immune ligands by members of a cytomegalovirus gene expansion suppresses natural killer cell activation. PMID:28186488
Proteomic Screen for Cellular Targets of the Vaccinia Virus F10 Protein Kinase Reveals that Phosphorylation of mDia Regulates Stress Fiber Formation. PMID:28183815
Comparative Proteomics of Purified Pathogen Vacuoles Correlates Intracellular Replication of Legionella pneumophila with the Small GTPase Ras-related protein 1 (Rap1). PMID:28183814
Quantitative Map of Proteome Dynamics during Neuronal Differentiation. PMID:28178528
Quantitative liver proteomics identifies FGF19 targets that couple metabolism and proliferation. PMID:28178326
Phylointeractomics reconstructs functional evolution of protein binding. PMID:28176777
Effects of ErbB2 Overexpression on the Proteome and ErbB Ligand-specific Phosphosignaling in Mammary Luminal Epithelial Cells. PMID:28174229
Diversity and functions of the sheep faecal microbiota: a multi-omic characterization. PMID:28165194
Nitration of tyrosines in complement factor H domains alters its immunological activity and mediates a pathogenic role in age related macular degeneration. PMID:28159936
Comprehensive Identification of mRNA-Binding Proteins of Leishmania donovani by Interactome Capture. PMID:28135300
PP2ACdc55 Phosphatase Imposes Ordered Cell-Cycle Phosphorylation by Opposing Threonine Phosphorylation. PMID:28132839
Melt With This Kiss: Paralyzing and Liquefying Venom of The Assassin Bug Pristhesancus plagipennis (Hemiptera: Reduviidae). PMID:28130397
Protein abundance of AKT and ERK pathway components governs cell type-specific regulation of proliferation. PMID:28123004
A Golden Age for Working with Public Proteomics Data. PMID:28118949
Identifying components required for OMP biogenesis as novel targets for antiinfective drugs. PMID:28118090
Extensive cargo identification reveals distinct biological roles of the 12 importin pathways. PMID:28117667
Improved surfaceome coverage with a label-free nonaffinity-purified workflow. PMID:28116781
Proteomic Analysis of Kveim Reagent Identifies Targets of Cellular Immunity in Sarcoidosis. PMID:28114394
Differential signaling networks of Bcr-Abl p210 and p190 kinases in leukemia cells defined by functional proteomics. PMID:28111465
PGRMC1 Is a Novel Potential Tumor Biomarker of Human Renal Cell Carcinoma Based on Quantitative Proteomic and Integrative Biological Assessments. PMID:28107520
Comparative Phosphoproteomics Reveals an Important Role of MKK2 in Banana (Musa spp.) Cold Signal Network. PMID:28106078
A ZIP6-ZIP10 heteromer controls NCAM1 phosphorylation and integration into focal adhesion complexes during epithelial-to-mesenchymal transition. PMID:28098160
MS_HistoneDB, a manually curated resource for proteomic analysis of human and mouse histones. PMID:28096900
Discrete cytosolic macromolecular BRAF complexes exhibit distinct activities and composition. PMID:28093501
Norovirus-Mediated Modification of the Translational Landscape via Virus and Host-Induced Cleavage of Translation Initiation Factors. PMID:28087593
Impact of Cystinosin Glycosylation on Protein Stability by Differential Dynamic Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC). PMID:28082515
Sex differences in tendon structure and function. PMID:28071813
Global Lysine Acetylome Analysis of Desiccated Somatic Embryos of Picea asperata. PMID:28066480
Deep Phosphoproteomic Measurements Pinpointing Drug Induced Protective Mechanisms in Neuronal Cells. PMID:28066266
A Global Analysis of the Receptor Tyrosine Kinase-Protein Phosphatase Interactome. PMID:28065597
Plasma proteome and metabolome characterization of an experimental human thyrotoxicosis model. PMID:28065164
Quantitative Proteomics Reveals Ecophysiological Effects of Light and Silver Stress on the Mixotrophic Protist Poterioochromonas malhamensis. PMID:28056027
The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes. PMID:28053160
Mechanosensing by the nucleus: From pathways to scaling relationships. PMID:28043971
Comprehensive Metaproteomic Analyses of Urine in the Presence and Absence of Neutrophil-Associated Inflammation in the Urinary Tract. PMID:28042331
Protein Phosphatase 2Cs and Microtubule-Associated Stress Protein 1 Control Microtubule Stability, Plant Growth, and Drought Response. PMID:28011693
Vascular Endothelial Growth Factor (VEGF) Promotes Assembly of the p130Cas Interactome to Drive Endothelial Chemotactic Signaling and Angiogenesis. PMID:28007913
Site-Specific Cleavage of Ribosomal RNA in Escherichia coli-Based Cell-Free Protein Synthesis Systems. PMID:27992588
The "PepSAVI-MS" Pipeline for Natural Product Bioactive Peptide Discovery. PMID:27991763
The Safety Limits Of An Extended Fast: Lessons from a Non-Model Organism. PMID:27991520
Architecture of the yeast Elongator complex. PMID:27974378
Large-scale reduction of the Bacillus subtilis genome: consequences for the transcriptional network, resource allocation, and metabolism. PMID:27965289
A Luciferase-fragment Complementation Assay to Detect Lipid Droplet-associated Protein-Protein Interactions. PMID:27956707
Novel insight into the composition of human single-stranded DNA-binding protein 1 (hSSB1)-containing protein complexes. PMID:27938330
A Strong Neutrophil Elastase Proteolytic Fingerprint Marks the Carcinoma Tumor Proteome. PMID:27927741
An Interactome-Centered Protein Discovery Approach Reveals Novel Components Involved in Mitosome Function and Homeostasis in Giardia lamblia. PMID:27926928
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition. PMID:27924013
A Molecular Basis for the Presentation of Phosphorylated Peptides by HLA-B Antigens. PMID:27920218
Enhanced limonene production in cyanobacteria reveals photosynthesis limitations. PMID:27911807
Quantitative and Selective Analysis of Feline Growth Related Proteins Using Parallel Reaction Monitoring High Resolution Mass Spectrometry. PMID:27907059
jPOSTrepo: an international standard data repository for proteomes. PMID:27899654
UniProt: the universal protein knowledgebase. PMID:27899622
Human Spermatozoa Quantitative Proteomic Signature Classifies Normo- and Asthenozoospermia. PMID:27895139
Membrane Complexes of Syntrophomonas wolfei Involved in Syntrophic Butyrate Degradation and Hydrogen Formation. PMID:27881975
Genome, transcriptome and proteome: the rise of omics data and their integration in biomedical sciences. PMID:27881428
Tapered-Tip Capillary Electrophoresis Nano-Electrospray Ionization Mass Spectrometry for Ultrasensitive Proteomics: the Mouse Cortex. PMID:27853976
Enzyme Kinetics for Complex System Enables Accurate Determination of Specificity Constants of Numerous Substrates in a Mixture by Proteomics Platform. PMID:27852747
Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone. PMID:27843720
Proteomic characterization of neuromelanin granules isolated from human substantia nigra by laser-microdissection. PMID:27841354
A proteomic adaptation of small intestinal mucosa in response to dietary protein limitation. PMID:27841298
Glucose-regulated and drug-perturbed phosphoproteome reveals molecular mechanisms controlling insulin secretion. PMID:27841257
In vivo protein interaction network analysis reveals porin-localized antibiotic inactivation in Acinetobacter baumannii strain AB5075. PMID:27834373
Neuronal GPCR OCTR-1 regulates innate immunity by controlling protein synthesis in Caenorhabditis elegans. PMID:27833098
A Role for Barley Calcium-Dependent Protein Kinase CPK2a in the Response to Drought. PMID:27826303
Sequence basis of Barnacle Cement Nanostructure is Defined by Proteins with Silk Homology. PMID:27824121
Proteome Remodeling in Response to Sulfur Limitation in "Candidatus Pelagibacter ubique". PMID:27822545
SCAI promotes DNA double-strand break repair in distinct chromosomal contexts. PMID:27820601
Cross-linking reveals laminin coiled-coil architecture. PMID:27815530
Integrative omics connects N-glycoproteome-wide alterations with pathways and regulatory events in induced pluripotent stem cells. PMID:27808266
Metabolic and physiological interdependencies in the Bathymodiolus azoricus symbiosis. PMID:27801908
KAT2A/KAT2B-targeted acetylome reveals a role for PLK4 acetylation in preventing centrosome amplification. PMID:27796307
Flexible Data Analysis Pipeline for High-Confidence Proteogenomics. PMID:27786492
Proteome and Peptidome of Vipera berus berus Venom. PMID:27775574
MZH29 is a novel potent inhibitor that overcomes drug resistance FLT3 mutations in acute myeloid leukemia. PMID:27773927
Nascent Proteome Remodeling following Homeostatic Scaling at Hippocampal Synapses. PMID:27764671
Insulin stimulated MCF7 breast cancer cells: Proteome dataset. PMID:27761513
Lsd1 Ablation Triggers Metabolic Reprogramming of Brown Adipose Tissue. PMID:27760309
Variations of Phosphorous Accessibility Causing Changes in Microbiome Functions in the Gastrointestinal Tract of Chickens. PMID:27760159
Proteomic and metabolomic analyses reveal metabolic responses to 3-hydroxypropionic acid synthesized internally in cyanobacterium Synechocystis sp. PCC 6803. PMID:27757169
Translocon component Sec62 acts in endoplasmic reticulum turnover during stress recovery. PMID:27749824
Thermophilic archaea activate butane via alkyl-coenzyme M formation. PMID:27749816
Immunoseroproteomic Profiling in African American Men with Prostate Cancer: Evidence for an Autoantibody Response to Glycolysis and Plasminogen-Associated Proteins. PMID:27742740
The Caveolin-3 G56S sequence variant of unknown significance: Muscle biopsy findings and functional cell biological analysis. PMID:27739254
Robust Label-free, Quantitative Profiling of Circulating Plasma Microparticle (MP) Associated Proteins. PMID:27738094
The membrane scaffold SLP2 anchors a proteolytic hub in mitochondria containing PARL and the i-AAA protease YME1L. PMID:27737933
Importance of Translocon Subunit Tic56 for rRNA Processing and Chloroplast Ribosome Assembly. PMID:27733515
The human-induced pluripotent stem cell initiative-data resources for cellular genetics. PMID:27733501
Monitoring Perinatal Gut Microbiota in Mouse Models by Mass Spectrometry Approaches: Parental Genetic Background and Breastfeeding Effects. PMID:27725814
circRNADb: A comprehensive database for human circular RNAs with protein-coding annotations. PMID:27725737
Quantitative Profiling of Single Formalin Fixed Tumour Sections: proteomics for translational research. PMID:27713570
Quantitative Proteomics of the SMAD (Suppressor of Mothers against Decapentaplegic) Transcription Factor Family Identifies Importin 5 as a Bone Morphogenic Protein Receptor SMAD-specific Importin. PMID:27703004
Isotope-targeted glycoproteomics (IsoTaG) analysis of sialylated N- and O-glycopeptides on an Orbitrap Fusion Tribrid using azido and alkynyl sugars. PMID:27695962
A proteinaceous organic matrix regulates carbonate mineral production in the marine teleost intestine. PMID:27694946
Extracellular IL-33 cytokine, but not endogenous nuclear IL-33, regulates protein expression in endothelial cells. PMID:27694941
Proteomic analysis uncovers common effects of IFN-γ and IL-27 on the HLA class I antigen presentation machinery in human cancer cells. PMID:27683036
Metaproteomics of saliva identifies human protein markers specific for individuals with periodontitis and dental caries compared to orally healthy controls. PMID:27672500
Impact of Moderate Temperature Changes on Neisseria meningitidis Adhesion Phenotypes and Proteome. PMID:27672084
The impact of sequence database choice on metaproteomic results in gut microbiota studies. PMID:27671352
Proteomic and genomic characterization of a yeast model for Ogden syndrome. PMID:27668839
Ska3 Ensures Timely Mitotic Progression by Interacting Directly With Microtubules and Ska1 Microtubule Binding Domain. PMID:27667719
Profiling of adhesive-related genes in the freshwater cnidarian Hydra magnipapillata by transcriptomics and proteomics. PMID:27661452
Antimicrobial peptide exposure selects for Staphylococcus aureus resistance to human defence peptides. PMID:27650186
Comparative Ploidy Proteomics of Candida albicans Biofilms Unraveled the Role of the AHP1 Gene in the Biofilm Persistence Against Amphotericin B. PMID:27644984
A Portrait of the Human Organelle Proteome In Space and Time during Cytomegalovirus Infection. PMID:27641956
Dynamic Protein Interactions of the Polycomb Repressive Complex 2 during Differentiation of Pluripotent Cells. PMID:27634302
Quantitative Proteomic Analysis of Wheat Seeds during Artificial Ageing and Priming Using the Isobaric Tandem Mass Tag Labeling. PMID:27632285
Loss of the Greatwall Kinase Weakens the Spindle Assembly Checkpoint. PMID:27631493
Distinct biological events generated by ECM proteolysis by two homologous collagenases. PMID:27630193
Proteomics of Human Dendritic Cell Subsets Reveals Subset-Specific Surface Markers and Differential Inflammasome Function. PMID:27626665
Systems Medicine as an Emerging Tool for Cardiovascular Genetics. PMID:27626034
TDP-43 loss of function inhibits endosomal trafficking and alters trophic signaling in neurons. PMID:27621269
The Proteasome Acts as a Hub for Plant Immunity and Is Targeted by Pseudomonas Type III Effectors. PMID:27613851
Biochemical Foundations of Health and Energy Conservation in Hibernating Free-ranging Subadult Brown Bear Ursus arctos. PMID:27609515
Conservation of miRNA-mediated silencing mechanisms across 600 million years of animal evolution. PMID:27604873
Comprehensive Proteomic Analysis of Human Milk-derived Extracellular Vesicles Unveils a Novel Functional Proteome Distinct from Other Milk Components. PMID:27601599
Comprehensive Proteome Profiling of Platelet Identified a Protein Profile Predictive of Responses to An Antiplatelet Agent Sarpogrelate. PMID:27601597
Detection of Missing Proteins Using the PRIDE Database as a Source of Mass Spectrometry Evidence. PMID:27581094
Integrative proteomic profiling of ovarian cancer cell lines reveals precursor cell associated proteins and functional status. PMID:27561551
The arginylation branch of the N-end rule pathway positively regulates cellular autophagic flux and clearance of proteotoxic proteins. PMID:27560450
Identification of RNA Binding Proteins Associated with Dengue Virus RNA in Infected Cells Reveals Temporally Distinct Host Factor Requirements. PMID:27556644
Quantitative profiling of spreading-coupled protein tyrosine phosphorylation in migratory cells. PMID:27554326
Proteomic analysis reveals dynamic regulation of fruit development and sugar and acid accumulation in apple. PMID:27535992
MASP-3 is the exclusive pro-factor D activator in resting blood: the lectin and the alternative complement pathways are fundamentally linked. PMID:27535802
Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana. PMID:27532006
A comprehensive and scalable database search system for metaproteomics. PMID:27528457
The composition and organization of Drosophila heterochromatin are heterogeneous and dynamic. PMID:27514026
Proteomic dataset of Paracentrotus lividus gonads of different sexes and at different maturation stages. PMID:27508229
Characterization of Outer Membrane Proteome of Akkermansia muciniphila Reveals Sets of Novel Proteins Exposed to the Human Intestine. PMID:27507967
Nucleation of DNA repair factors by FOXA1 links DNA demethylation to transcriptional pioneering. PMID:27500525
Glycoproteomic Analysis of Malignant Ovarian Cancer Ascites Fluid Identifies Unusual Glycopeptides. PMID:27500424
Quantitative analyses of the hepatic proteome of methylmercury-exposed Atlantic cod (Gadus morhua) suggest oxidative stress-mediated effects on cellular energy metabolism. PMID:27496535
Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets. PMID:27493588
Drought-Induced Leaf Proteome Changes in Switchgrass Seedlings. PMID:27490537
Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1. PMID:27490519
Metrics for the Human Proteome Project 2016: Progress on Identifying and Characterizing the Human Proteome, Including Post-Translational Modifications. PMID:27487407
A proteomics approach reveals molecular manipulators of distinct cellular processes in the salivary glands of Glossina m. morsitans in response to Trypanosoma b. brucei infections. PMID:27485005
Toll-like receptor 2 activation depends on lipopeptide shedding by bacterial surfactants. PMID:27470911
Characterization of Gonadotrope Secretoproteome Identifies Neurosecretory Protein VGF-derived Peptide Suppression of Follicle-stimulating Hormone Gene Expression. PMID:27466366
Fasciola hepatica Surface Tegument: Glycoproteins at the Interface of Parasite and Host. PMID:27466253
Circadian Profiling of the Arabidopsis Proteome Using 2D-DIGE. PMID:27462335
Proteomic Analysis of the Hydrogen and Carbon Monoxide Metabolism of Methanothermobacter marburgensis. PMID:27458443
Approach for Identifying Human Leukocyte Antigen (HLA)-DR Bound Peptides from Scarce Clinical Samples. PMID:27452731
Quantitative Proteomic and Transcriptomic Study on Autotetraploid Paulownia and Its Diploid Parent Reveal Key Metabolic Processes Associated with Paulownia Autotetraploidization. PMID:27446122
Static Clathrin Assemblies at the Peripheral Vacuole-Plasma Membrane Interface of the Parasitic Protozoan Giardia lamblia. PMID:27438602
Identification of Oligosaccharides in Feces of Breast-fed Infants and Their Correlation with the Gut Microbial Community. PMID:27435585
Comparative Proteomics and Functional Analysis Reveal a Role of Plasmodium falciparum Osmiophilic Bodies in Malaria Parasite Transmission. PMID:27432909
Human Leukocyte Antigen (HLA) Peptides Derived from Tumor Antigens Induced by Inhibition of DNA Methylation for Development of Drug-facilitated Immunotherapy. PMID:27412690
A standardized production pipeline for high profile targets from Mycobacterium tuberculosis. PMID:27400835
Integrated Omic Analysis of a Guinea Pig Model of Heart Failure and Sudden Cardiac Death. PMID:27399916
Antibody-independent identification of bovine milk-derived peptides in breast-milk. PMID:27396729
HVint: A Strategy for Identifying Novel Protein-Protein Interactions in Herpes Simplex Virus Type 1. PMID:27384951
Embryonic lethal abnormal vision proteins and adenine and uridine-rich element mRNAs after global cerebral ischemia and reperfusion in the rat. PMID:27381823
Transcriptome- Assisted Label-Free Quantitative Proteomics Analysis Reveals Novel Insights into Piper nigrum-Phytophthora capsici Phytopathosystem. PMID:27379110
Global changes of the RNA-bound proteome during the maternal-to-zygotic transition in Drosophila. PMID:27378189
HIV-host interactome revealed directly from infected cells. PMID:27375898
Evidence That G-quadruplex DNA Accumulates in the Cytoplasm and Participates in Stress Granule Assembly in Response to Oxidative Stress. PMID:27369081
A Human Lectin Microarray for Sperm Surface Glycosylation Analysis. PMID:27364157
Data from quantitative label free proteomics analysis of rat spleen. PMID:27358910
MetaPro-IQ: a universal metaproteomic approach to studying human and mouse gut microbiota. PMID:27343061
Activation of an Endoribonuclease by Non-intein Protein Splicing. PMID:27311716
Identification of Quantitative Proteomic Differences between Mycobacterium tuberculosis Lineages with Altered Virulence. PMID:27303394
The innate immune protein calprotectin promotes Pseudomonas aeruginosa and Staphylococcus aureus interaction. PMID:27301800
The CENP-T/-W complex is a binding partner of the histone chaperone FACT. PMID:27284163
Immunoproteomic identification of MbovP579, a promising diagnostic biomarker for serological detection of Mycoplasma bovis infection. PMID:27281618
Association of potential salivary biomarkers with diabetic retinopathy and its severity in type-2 diabetes mellitus: a proteomic analysis by mass spectrometry. PMID:27280065
Protein kinase A-dependent phosphorylation stimulates the transcriptional activity of hypoxia-inducible factor 1. PMID:27245613
Preferential Phosphorylation on Old Histones during Early Mitosis in Human Cells. PMID:27226594
Distinctive proteomic profiles among different regions of human carotid plaques in men and women. PMID:27198765
A novel nuclear genetic code alteration in yeasts and the evolution of codon reassignment in eukaryotes. PMID:27197221
Venus flytrap carnivorous lifestyle builds on herbivore defense strategies. PMID:27197216
Identification of glycoproteins associated with HIV latently infected cells using quantitative glycoproteomics. PMID:27195445
Tyrosine 601 of Bacillus subtilis DnaK Undergoes Phosphorylation and Is Crucial for Chaperone Activity and Heat Shock Survival. PMID:27148221
Proteomic Insight into the Response of Arabidopsis Chloroplasts to Darkness. PMID:27137770
Proteome Profile and Quantitative Proteomic Analysis of Buffalo (Bubalusbubalis) Follicular Fluid during Follicle Development. PMID:27136540
Enhanced snoMEN Vectors Facilitate Establishment of GFP-HIF-1α Protein Replacement Human Cell Lines. PMID:27128805
The Metacaspase (Mca1p) Restricts O-glycosylation During Farnesol-induced Apoptosis in Candida albicans. PMID:27125826
Cellulose and hemicellulose decomposition by forest soil bacteria proceeds by the action of structurally variable enzymatic systems. PMID:27125755
Quantitative Proteome Analysis of Leishmania donovani under Spermidine Starvation. PMID:27123864
Nanonets Collect Cancer Secretome from Pericellular Space. PMID:27100780
Prolyl hydroxylation regulates protein degradation, synthesis, and splicing in human induced pluripotent stem cell-derived cardiomyocytes. PMID:27095734
Unconventional endosome-like compartment and retromer complex in Toxoplasma gondii govern parasite integrity and host infection. PMID:27064065
Changes over lactation in breast milk serum proteins involved in the maturation of immune and digestive system of the infant. PMID:26977438
Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage. PMID:26973616
Quantitative Proteomics Reveals β2 Integrin-mediated Cytoskeletal Rearrangement in Vascular Endothelial Growth Factor (VEGF)-induced Retinal Vascular Hyperpermeability. PMID:26969716
A proteome analysis of freezing tolerance in red clover (Trifolium pratense L.). PMID:26965047
Phosphorylation of plastoglobular proteins in Arabidopsis thaliana. PMID:26962209
Molecular architecture of the Dam1 complex-microtubule interaction. PMID:26962051
Open-gate mutants of the mammalian proteasome show enhanced ubiquitin-conjugate degradation. PMID:26957043
Compensating the Fitness Costs of Synonymous Mutations. PMID:26882986
The 2016 database issue of Nucleic Acids Research and an updated molecular biology database collection. PMID:26740669
The European Bioinformatics Institute in 2016: Data growth and integration. PMID:26673705
ProteomeXchange provides globally coordinated proteomics data submission and dissemination PubMed citations: 1280.

1280 articles citing: ProteomeXchange provides globally coordinated proteomics data submission and dissemination

Metabolomic and proteomic profiling in bipolar disorder patients revealed potential molecular signatures related to hemostasis. PMID:35922643
Activity-based protein profiling identifies alternating activation of enzymes involved in the bifidobacterium shunt pathway or mucin degradation in the gut microbiome response to soluble dietary fiber. PMID:35858888
Accelerated lysine metabolism conveys kidney protection in salt-sensitive hypertension. PMID:35835746
Cryo-EM structures of prion protein filaments from Gerstmann-Sträussler-Scheinker disease. PMID:35819518
α-Synuclein molecular behavior and nigral proteomic profiling distinguish subtypes of Lewy body disorders. PMID:35748929
The Combined Partial Knockdown of CBS and MPST Genes Induces Inflammation, Impairs Adipocyte Function-Related Gene Expression and Disrupts Protein Persulfidation in Human Adipocytes. PMID:35739994
HSP90 and Aha1 modulate microRNA maturation through promoting the folding of Dicer1. PMID:35736213
Integrated Multilayer Omics Reveals the Genomic, Proteomic, and Metabolic Influences of Histidyl Dipeptides on the Heart. PMID:35730646
Integrated view and comparative analysis of baseline protein expression in mouse and rat tissues. PMID:35714157
ANGT_HUMAN[448-462], an Anorexigenic Peptide Identified Using Plasma Peptidomics. PMID:35702602
Method for Independent Estimation of the False Localization Rate for Phosphoproteomics. PMID:35640880
Redox regulation of PTPN22 affects the severity of T-cell-dependent autoimmune inflammation. PMID:35587260
Accurate Proteomewide Measurement of Methionine Oxidation in Aging Mouse Brains. PMID:35584362
A Middle Pleistocene Denisovan molar from the Annamite Chain of northern Laos. PMID:35581187
Dynamic human liver proteome atlas reveals functional insights into disease pathways. PMID:35579278
Skin Cancer-Associated S. aureus Strains Can Induce DNA Damage in Human Keratinocytes by Downregulating DNA Repair and Promoting Oxidative Stress. PMID:35565272
Repeated Exposure of Macrophages to Synthetic Amorphous Silica Induces Adaptive Proteome Changes and a Moderate Cell Activation. PMID:35564134
Multiomic Profiling Identified EGF Receptor Signaling as a Potential Inhibitor of Type I Interferon Response in Models of Oncolytic Therapy by Vesicular Stomatitis Virus. PMID:35563635
Building Spectral Libraries from Narrow-Window Data-Independent Acquisition Mass Spectrometry Data. PMID:35549345
Identification of Antibiotic Resistance Proteins via MiCId's Augmented Workflow. A Mass Spectrometry-Based Proteomics Approach. PMID:35500907
A Non-Hazardous Deparaffinization Protocol Enables Quantitative Proteomics of Core Needle Biopsy-Sized Formalin-Fixed and Paraffin-Embedded (FFPE) Tissue Specimens. PMID:35457260
Simulation Testbed for Evaluating Distributed Querying and Searching of Mass Spectrometry Big Data in a Network-based Infrastructure. PMID:35425943
A Single Bout of Ultra-Endurance Exercise Reveals Early Signs of Muscle Aging in Master Athletes. PMID:35409073
Comparative Proteomic Profiling of Ectosomes Derived from Thyroid Carcinoma and Normal Thyroid Cells Uncovers Multiple Proteins with Functional Implications in Cancer. PMID:35406748
In Vitro Erythropoiesis at Different pO2 Induces Adaptations That Are Independent of Prior Systemic Exposure to Hypoxia. PMID:35406648
The role of albumin and the extracellular matrix on the pathophysiology of oedema formation in severe malnutrition. PMID:35398787
Proteomic profiling of postmortem prefrontal cortex tissue of suicide completers. PMID:35383147
Auxiliary ATP binding sites support DNA unwinding by RecBCD. PMID:35379800
SEED LIPID DROPLET PROTEIN1, SEED LIPID DROPLET PROTEIN2, and LIPID DROPLET PLASMA MEMBRANE ADAPTOR mediate lipid droplet-plasma membrane tethering. PMID:35348751
The pattern of apolipoprotein A-I lysine carbamylation reflects its lipidation state and the chemical environment within human atherosclerotic aorta. PMID:35304099
Metaproteomics as a tool for studying the protein landscape of human-gut bacterial species. PMID:35302987
N-terminome analyses underscore the prevalence of SPPL3-mediated intramembrane proteolysis among Golgi-resident enzymes and its role in Golgi enzyme secretion. PMID:35279766
OpenCell: Endogenous tagging for the cartography of human cellular organization. PMID:35271311
The schizophrenia-associated variant in SLC39A8 alters protein glycosylation in the mouse brain. PMID:35260802
AP-4-mediated axonal transport controls endocannabinoid production in neurons. PMID:35217685
Review of Liquid Chromatography-Mass Spectrometry-Based Proteomic Analyses of Body Fluids to Diagnose Infectious Diseases. PMID:35216306
Host Defense Peptides LL-37 and Lactoferrin Trigger ET Release from Blood-Derived Circulating Monocytes. PMID:35203676
Calibr improves spectral library search for spectrum-centric analysis of data independent acquisition proteomics. PMID:35132134
Interpretation of the DOME Recommendations for Machine Learning in Proteomics and Metabolomics. PMID:35119864
Path to Clonal Theranostics in Luminal Breast Cancers. PMID:35096604
Viral immune evasins impact antigen presentation by allele-specific trapping of MHC I at the peptide-loading complex. PMID:35087068
Comparison of Different Label-Free Techniques for the Semi-Absolute Quantification of Protein Abundance. PMID:35076627
Standard Flow Multiplexed Proteomics (SFloMPro)-An Accessible Alternative to NanoFlow Based Shotgun Proteomics. PMID:35076613
Novel γ-sarcoglycan interactors in murine muscle membranes. PMID:35065666
Circulating ACE2-expressing extracellular vesicles block broad strains of SARS-CoV-2. PMID:35058437
Deciphering Biomarkers for Leptomeningeal Metastasis in Malignant Hemopathies (Lymphoma/Leukemia) Patients by Comprehensive Multipronged Proteomics Characterization of Cerebrospinal Fluid. PMID:35053611
Comparative Proteomics of Coxiella like Endosymbionts (CLEs) in the Symbiotic Organs of Rhipicephalus sanguineus Ticks. PMID:35019702
Temporal Quantitative Phosphoproteomics Profiling of Interleukin-33 Signaling Network Reveals Unique Modulators of Monocyte Activation. PMID:35011700
Dichotomous Responses to Chronic Fetal Hypoxia Lead to a Predetermined Aging Phenotype. PMID:34958949
Sequestosome 1 Is Part of the Interaction Network of VAPB. PMID:34948065
Deepening into Intracellular Signaling Landscape through Integrative Spatial Proteomics and Transcriptomics in a Lymphoma Model. PMID:34944421
Perspective of the GEMSTONE Consortium on Current and Future Approaches to Functional Validation for Skeletal Genetic Disease Using Cellular, Molecular and Animal-Modeling Techniques. PMID:34938269
Proteomic mapping of atrial and ventricular heart tissue in patients with aortic valve stenosis. PMID:34937869
4-Deoxy-4-fluoro-GalNAz (4FGalNAz) Is a Metabolic Chemical Reporter of O-GlcNAc Modifications, Highlighting the Notable Substrate Flexibility of O-GlcNAc Transferase. PMID:34931806
Hyperosmolarity adversely impacts recombinant protein synthesis by Yarrowia lipolytica-molecular background revealed by quantitative proteomics. PMID:34913994
Salivary Proteome Profile of Women during Fertile Phase of Menstrual Cycle as Characterized by Mass Spectrometry. PMID:34909380
iProX in 2021: connecting proteomics data sharing with big data. PMID:34871441
GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser. PMID:34862502
ProMetIS, deep phenotyping of mouse models by combined proteomics and metabolomics analysis. PMID:34862403
BtuB-Dependent Infection of the T5-like Yersinia Phage ϕR2-01. PMID:34834977
Biomimetic Nanoparticles Coated with Bacterial Outer Membrane Vesicles as a New-Generation Platform for Biomedical Applications. PMID:34834302
Fox Serum Proteomics Analysis Suggests Host-Specific Responses to Angiostrongylus vasorum Infection in Canids. PMID:34832667
Systemic Effects of Hemorrhagic Snake Venom Metalloproteinases: Untargeted Peptidomics to Explore the Pathodegradome of Plasma Proteins. PMID:34822548
The Angiostrongylus vasorum Excretory/Secretory and Surface Proteome Contains Putative Modulators of the Host Coagulation. PMID:34796127
The Circadian Clock Gene Circuit Controls Protein and Phosphoprotein Rhythms in Arabidopsis thaliana. PMID:34740825
Truncation of the TPR domain of OGT alters substrate and glycosite selection. PMID:34725712
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences. PMID:34723319
DeepLC can predict retention times for peptides that carry as-yet unseen modifications. PMID:34711972
Bioinformatics in Immunoglobulin Glycosylation Analysis. PMID:34687011
Proteomic analysis of the host-pathogen interface in experimental cholera. PMID:34675415
PGRMC1 acts as a size-selective cargo receptor to drive ER-phagic clearance of mutant prohormones. PMID:34645803
Single-cell RNA-seq unravels alterations of the human spermatogonial stem cell compartment in patients with impaired spermatogenesis. PMID:34622232
A dual-function RNA balances carbon uptake and central metabolism in Vibrio cholerae. PMID:34612526
The growing need for controlled data access models in clinical proteomics and metabolomics. PMID:34599180
A protein network map of head and neck cancer reveals PIK3CA mutant drug sensitivity. PMID:34591642
A protein interaction landscape of breast cancer. PMID:34591612
Proteomics-Based Retinal Target Engagement Analysis and Retina-Targeted Delivery of 17β-Estradiol by the DHED Prodrug for Ocular Neurotherapy in Males. PMID:34575465
Subcellular proteomics. PMID:34549195
Data Management and Modeling in Plant Biology. PMID:34539712
Discovery of a small protein-encoding cis-regulatory overlapping gene of the tumor suppressor gene Scribble in humans. PMID:34535749
Utilizing thermal proteome profiling to identify the molecular targets of anti-leishmanial compounds. PMID:34467225
Global Lysine Acetylome Analysis of LPS-Stimulated HepG2 Cells Identified Hyperacetylation of PKM2 as a Metabolic Regulator in Sepsis. PMID:34445236
Proteomic-Based Analysis of Hypoxia- and Physioxia-Responsive Proteins and Pathways in Diffuse Large B-Cell Lymphoma. PMID:34440794
Quantitative Proteomics Reveals Significant Differences between Mouse Brain Formations in Expression of Proteins Involved in Neuronal Plasticity during Aging. PMID:34440790
The Integrity of the HMR complex is necessary for centromeric binding and reproductive isolation in Drosophila. PMID:34424906
The Arabidopsis PeptideAtlas: Harnessing worldwide proteomics data to create a comprehensive community proteomics resource. PMID:34411258
Survival analysis in breast cancer using proteomic data from four independent datasets. PMID:34408238
Bacteriophages fEV-1 and fD1 Infect Yersinia pestis. PMID:34372590
ppx: Programmatic Access to Proteomics Data Repositories. PMID:34342226
GHB analogs confer neuroprotection through specific interaction with the CaMKIIα hub domain. PMID:34330837
Spatial epi-proteomics enabled by histone post-translational modification analysis from low-abundance clinical samples. PMID:34315505
Immunopeptidomics-Guided Warehouse Design for Peptide-Based Immunotherapy in Chronic Lymphocytic Leukemia. PMID:34305947
Evaluation of the Sensitivity of Proteomics Methods Using the Absolute Copy Number of Proteins in a Single Cell as a Metric. PMID:34287363
Automatization and self-maintenance of the O-GlcNAcome catalog: a smart scientific database. PMID:34279596
GIP_HUMAN[22-51] is a new proatherogenic peptide identified by native plasma peptidomics. PMID:34262109
Chronic binge alcohol and ovariectomy dysregulate omental adipose tissue metaboproteome in simian immunodeficiency virus-infected female macaques. PMID:34252326
Glycan Compositions with GlyConnect Compozitor to Enhance Glycopeptide Identification. PMID:34236658
Site-Specific N- and O-Glycosylation Analysis of Human Plasma Fibronectin. PMID:34211961
ATR regulates neuronal activity by modulating presynaptic firing. PMID:34210973
Old World Vipers-A Review about Snake Venom Proteomics of Viperinae and Their Variations. PMID:34204565
Proteomic Profiling of Ectosomes Derived from Paired Urothelial Bladder Cancer and Normal Cells Reveals the Presence of Biologically-Relevant Molecules. PMID:34202855
Changes in the Cell Wall Proteome of Leaves in Response to High Temperature Stress in Brachypodium distachyon. PMID:34201710
Absolute Proteome Analysis of Hippocampus, Cortex and Cerebellum in Aged and Young Mice Reveals Changes in Energy Metabolism. PMID:34201282
In-depth proteomics analysis of sentinel lymph nodes from individuals with endometrial cancer. PMID:34195683
Proteomic Portraits Reveal Evolutionarily Conserved and Divergent Responses to Spinal Cord Injury. PMID:34129941
Structure of Tau filaments in Prion protein amyloidoses. PMID:34128081
Time-Dependent Analysis of Paenarthrobacter nicotinovorans pAO1 Nicotine-Related Proteome. PMID:34124447
Extracellular Vesicle Proteome of Breast Cancer Patients with and Without Cognitive Impairment Following Anthracycline-based Chemotherapy: An Exploratory Study. PMID:34103887
Identification of an RNA sponge that controls the RoxS riboregulator of central metabolism in Bacillus subtilis. PMID:34096591
Proteomic Analyses of Vitreous in Proliferative Diabetic Retinopathy: Prior Studies and Future Outlook. PMID:34070658
Long-Term Exposure to Nanosized TiO2 Triggers Stress Responses and Cell Death Pathways in Pulmonary Epithelial Cells. PMID:34069552
Characterization of Extracellular Vesicle Cargo in Sjögren's Syndrome through a SWATH-MS Proteomics Approach. PMID:34064456
Cryo-EM structure of the mature and infective Mayaro virus at 4.4 Å resolution reveals features of arthritogenic alphaviruses. PMID:34031424
Quality standards in proteomics research facilities: Common standards and quality procedures are essential for proteomics facilities and their users. PMID:34009726
Ser/Thr Kinase-Dependent Phosphorylation of the Peptidoglycan Hydrolase CwlA Controls Its Export and Modulates Cell Division in Clostridioides difficile. PMID:34006648
PERCEPTRON: an open-source GPU-accelerated proteoform identification pipeline for top-down proteomics. PMID:33999207
Construction of Unified Human Antimicrobial and Immunomodulatory Peptide Database and Examination of Antimicrobial and Immunomodulatory Peptides in Alzheimer's Disease Using Network Analysis of Proteomics Datasets. PMID:33995478
A data-independent acquisition-based global phosphoproteomics system enables deep profiling. PMID:33953186
ST6Gal1 targets the ectodomain of ErbB2 in a site-specific manner and regulates gastric cancer cell sensitivity to trastuzumab. PMID:33947960
Proteomic Studies of Primary Acute Myeloid Leukemia Cells Derived from Patients Before and during Disease-Stabilizing Treatment Based on All-Trans Retinoic Acid and Valproic Acid. PMID:33946813
Arabidopsis thaliana EARLY RESPONSIVE TO DEHYDRATION 7 Localizes to Lipid Droplets via Its Senescence Domain. PMID:33936146
Formation of polarized contractile interfaces by self-organized Toll-8/Cirl GPCR asymmetry. PMID:33932333
Biochemical and Proteomic Changes in the Roots of M4 Grapevine Rootstock in Response to Nitrate Availability. PMID:33920578
Analysis of Astroglial Secretomic Profile in the Mecp2-Deficient Male Mouse Model of Rett Syndrome. PMID:33919253
Understanding the Molecular Mechanism of miR-877-3p Could Provide Potential Biomarkers and Therapeutic Targets in Squamous Cell Carcinoma of the Cervix. PMID:33917510
Purification and quantitative proteomic analysis of cell bodies and protrusions. PMID:33912849
Knock out of specific maternal vitellogenins in zebrafish (Danio rerio) evokes vital changes in egg proteomic profiles that resemble the phenotype of poor quality eggs. PMID:33910518
Proteomic Profiling of the Substantia Nigra to Identify Determinants of Lewy Body Pathology and Dopaminergic Neuronal Loss. PMID:33900085
Proteomic Changes Associated With Sperm Fertilizing Ability in Meat-Type Roosters. PMID:33898456
Urinary Metabolomic and Proteomic Analyses in a Mouse Model of Prostatic Inflammation. PMID:33870183
GeenaR: A Web Tool for Reproducible MALDI-TOF Analysis. PMID:33854526
Metformin impairs cisplatin resistance effects in A549 lung cancer cells through mTOR signaling and other metabolic pathways. PMID:33846781
Impact of whole-body versus nose-only inhalation exposure systems on systemic, respiratory, and cardiovascular endpoints in a 2-month cigarette smoke exposure study in the ApoE-/- mouse model. PMID:33825214
IonQuant Enables Accurate and Sensitive Label-Free Quantification With FDR-Controlled Match-Between-Runs. PMID:33813065
Label-Free Quantitative Proteomic Analysis of Nitrogen Starvation in Arabidopsis Root Reveals New Aspects of H2S Signaling by Protein Persulfidation. PMID:33805243
Human OMICs and Computational Biology Research in Africa: Current Challenges and Prospects. PMID:33794662
Cuprizone and EAE mouse frontal cortex proteomics revealed proteins altered in multiple sclerosis. PMID:33785790
Improved SILAC Quantification with Data-Independent Acquisition to Investigate Bortezomib-Induced Protein Degradation. PMID:33764077
Cooperative treatment effectiveness of ATR and HSP90 inhibition in Ewing's sarcoma cells. PMID:33743824
Species-Specific Immunological Reactivities Depend on the Cell-Wall Organization of the Two Aspergillus, Aspergillus fumigatus and A. flavus. PMID:33718288
Schwann cell plasticity regulates neuroblastic tumor cell differentiation via epidermal growth factor-like protein 8. PMID:33712610
Data Management of Sensitive Human Proteomics Data: Current Practices, Recommendations, and Perspectives for the Future. PMID:33711481
PhyloQuant approach provides insights into Trypanosoma cruzi evolution using a systems-wide mass spectrometry-based quantitative protein profile. PMID:33707618
Molecular alterations in oral cancer using high-throughput proteomic analysis of formalin-fixed paraffin-embedded tissue. PMID:33683571
Packed red blood cells inhibit T-cell activation via ROS-dependent signaling pathways. PMID:33676898
OmicLoupe: facilitating biological discovery by interactive exploration of multiple omic datasets and statistical comparisons. PMID:33663372
System-wide identification and prioritization of enzyme substrates by thermal analysis. PMID:33637753
Type I and type V procollagen triple helix uses different subsets of the molecular ensemble for lysine posttranslational modifications in the rER. PMID:33631195
Investigating an increase in Florida manatee mortalities using a proteomic approach. PMID:33608577
Biogeographical venom variation in the Indian spectacled cobra (Naja naja) underscores the pressing need for pan-India efficacious snakebite therapy. PMID:33600405
Determinants of genome-wide distribution and evolution of uORFs in eukaryotes. PMID:33597535
mokapot: Fast and Flexible Semisupervised Learning for Peptide Detection. PMID:33596079
Centrosome amplification mediates small extracellular vesicle secretion via lysosome disruption. PMID:33592190
Proteomics Complementation of the Rat Uterotrophic Assay for Estrogenic Endocrine Disruptors: A Roadmap of Advancing High Resolution Mass Spectrometry-Based Shotgun Survey to Targeted Biomarker Quantifications. PMID:33567512
Large-Scale Proteomic Analysis of Follicular Lymphoma Reveals Extensive Remodeling of Cell Adhesion Pathway and Identifies Hub Proteins Related to the Lymphomagenesis. PMID:33562532
Proteomic Profiling and Artificial Intelligence for Hepatocellular Carcinoma Translational Medicine. PMID:33562077
Simplified and Unified Access to Cancer Proteogenomic Data. PMID:33560848
Human DDK rescues stalled forks and counteracts checkpoint inhibition at unfired origins to complete DNA replication. PMID:33545059
Rab7-harboring vesicles are carriers of the transferrin receptor through the biosynthetic secretory pathway. PMID:33523982
Parthenolide Destabilizes Microtubules by Covalently Modifying Tubulin. PMID:33482110
Eicosanoid Content in Fetal Calf Serum Accounts for Reproducibility Challenges in Cell Culture. PMID:33467719
Ethical Principles, Constraints and Opportunities in Clinical Proteomics. PMID:33453411
Suprabasin-derived bioactive peptides identified by plasma peptidomics. PMID:33441610
Quantitative proteomics analysis of Angiostrongylus vasorum-induced alterations in dog serum sheds light on the pathogenesis of canine angiostrongylosis. PMID:33431914
CYP450 core involvement in multiple resistance strains of Aedes aegypti from French Guiana highlighted by proteomics, molecular and biochemical studies. PMID:33428654
Intestinal differentiation involves cleavage of histone H3 N-terminal tails by multiple proteases. PMID:33398338
The Impact of Biomaterial Cell Contact on the Immunopeptidome. PMID:33392160
Improving the Identification and Coverage of Plant Transmembrane Proteins in Medicago Using Bottom-Up Proteomics. PMID:33391307
The Proteomic Landscape of Resting and Activated CD4+ T Cells Reveal Insights into Cell Differentiation and Function. PMID:33383959
Comparative Proteomics Analysis Reveals Unique Early Signaling Response of Saccharomyces cerevisiae to Oxidants with Different Mechanism of Action. PMID:33375274
State of the Field in Multi-Omics Research: From Computational Needs to Data Mining and Sharing. PMID:33362867
Protein Synthesis in the Developing Neocortex at Near-Atomic Resolution Reveals Ebp1-Mediated Neuronal Proteostasis at the 60S Tunnel Exit. PMID:33357414
Biological characteristics of aging in human acute myeloid leukemia cells: the possible importance of aldehyde dehydrogenase, the cytoskeleton and altered transcriptional regulation. PMID:33349623
Multi-omics data integration considerations and study design for biological systems and disease. PMID:33347526
Preparing for Life: Plasma Proteome Changes and Immune System Development During the First Week of Human Life. PMID:33329546
Registered report protocol: Quantitative analysis of septin Cdc10-associated proteome in Cryptococcus neoformans. PMID:33315917
Secretome Analysis of Inductive Signals for BM-MSC Transdifferentiation into Salivary Gland Progenitors. PMID:33260559
Aberrant (pro)renin receptor expression induces genomic instability in pancreatic ductal adenocarcinoma through upregulation of SMARCA5/SNF2H. PMID:33247206
The Human Adenovirus Type 2 Transcriptome: An Amazing Complexity of Alternatively Spliced mRNAs. PMID:33239457
Combined the SMAC mimetic and BCL2 inhibitor sensitizes neoadjuvant chemotherapy by targeting necrosome complexes in tyrosine aminoacyl-tRNA synthase-positive breast cancer. PMID:33239070
Efficient Confirmation of Plant Viral Proteins and Identification of Specific Viral Strains by nanoLC-ESI-Q-TOF Using Single-Leaf-Tissue Samples. PMID:33228257
GlycoPOST realizes FAIR principles for glycomics mass spectrometry data. PMID:33174597
Subcellular mRNA Localization Regulates Ribosome Biogenesis in Migrating Cells. PMID:33171110
Amyotrophic Lateral Sclerosis Is Accompanied by Protein Derangements in the Olfactory Bulb-Tract Axis. PMID:33167591
Argonaut: A Web Platform for Collaborative Multi-omic Data Visualization and Exploration. PMID:33154995
Preparation of Multi-omics Grade Extracellular Vesicles by Density-Based Fractionation of Urine. PMID:33111109
Identification, Characterization and Synthesis of Walterospermin, a Sperm Motility Activator from the Egyptian Black Snake Walterinnesia aegyptia Venom. PMID:33096770
A high-stringency blueprint of the human proteome. PMID:33067450
The tissue proteome in the multi-omic landscape of kidney disease. PMID:33028957
Label-Free Mass Spectrometry-Based Quantification of Linker Histone H1 Variants in Clinical Samples. PMID:33020374
Investigating Patterns of Immune Interaction in Ovarian Cancer: Probing the O-glycoproteome by the Macrophage Galactose-Like C-type Lectin (MGL). PMID:33019700
ADAM17 cytoplasmic domain modulates Thioredoxin-1 conformation and activity. PMID:33011677
The STRIPAK signaling complex regulates dephosphorylation of GUL1, an RNA-binding protein that shuttles on endosomes. PMID:32997654
Clearance of senescent cells during cardiac ischemia-reperfusion injury improves recovery. PMID:32996233
Extracellular vesicles in patients in the acute phase of psychosis and after clinical improvement: an explorative study. PMID:32995075
Proteomic Mapping of Multifunctional Complexes Within Triatomine Saliva. PMID:32984079
Dissecting the antibacterial activity of oxadiazolone-core derivatives against Mycobacterium abscessus. PMID:32946441
MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets. PMID:32929271
Progressive Proteome Changes in the Myocardium of a Pig Model for Duchenne Muscular Dystrophy. PMID:32927262
Insights into glucocorticoid responses derived from omics studies. PMID:32910934
Extrinsic immune cell-derived, but not intrinsic oligodendroglial factors contribute to oligodendroglial differentiation block in multiple sclerosis. PMID:32894330
Proteomic Characterization of the Olfactory Molecular Imbalance in Dementia with Lewy Bodies. PMID:32887355
The Capture of a Disabled Proteasome Identifies Erg25 as a Substrate for Endoplasmic Reticulum Associated Degradation. PMID:32868373
Co-expression analysis of pancreatic cancer proteome reveals biology and prognostic biomarkers. PMID:32860207
Marker Identification of the Grade of Dysplasia of Intraductal Papillary Mucinous Neoplasm in Pancreatic Cyst Fluid by Quantitative Proteomic Profiling. PMID:32842508
Analytical Guidelines for co-fractionation Mass Spectrometry Obtained through Global Profiling of Gold Standard Saccharomyces cerevisiae Protein Complexes. PMID:32817346
Identification of modified peptides using localization-aware open search. PMID:32792501
Proteomic analysis of synovial fluid from rheumatic arthritis and spondyloarthritis patients. PMID:32782445
Sirt2 Inhibition Enhances Metabolic Fitness and Effector Functions of Tumor-Reactive T Cells. PMID:32768387
Cellular response of Brevibacterium casei #NIOSBA88 to arsenic and chromium-a proteomic approach. PMID:32729030
Papain-like protease regulates SARS-CoV-2 viral spread and innate immunity. PMID:32726803
Discovery of treatment for nerve agents targeting a new metabolic pathway. PMID:32720192
Deep Proteomic Deconvolution of Interferons and HBV Transfection Effects on a Hepatoblastoma Cell Line. PMID:32685848
Proteomics Using Protease Alternatives to Trypsin Benefits from Sequential Digestion with Trypsin. PMID:32628831
Fast Quantitative Analysis of timsTOF PASEF Data with MSFragger and IonQuant. PMID:32616513
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE). PMID:32598315
Photosynthetic Metabolism and Nitrogen Reshuffling Are Regulated by Reversible Cysteine Thiol Oxidation Following Nitrogen Deprivation in Chlamydomonas. PMID:32585825
Proteomics of Galápagos Marine Iguanas Links Function of Femoral Gland Proteins to the Immune System. PMID:32581039
Time-series proteomic study of the response of HK-2 cells to hyperglycemic, hypoxic diabetic-like milieu. PMID:32579601
Discovery of a Potent and Selective Covalent Inhibitor and Activity-Based Probe for the Deubiquitylating Enzyme UCHL1, with Antifibrotic Activity. PMID:32579346
System-wide analyses of the fission yeast poly(A)+ RNA interactome reveal insights into organization and function of RNA-protein complexes. PMID:32554781
Gain-of-function genetic screen of the kinome reveals BRSK2 as an inhibitor of the NRF2 transcription factor. PMID:32546533
Atomic-resolution mapping of transcription factor-DNA interactions by femtosecond laser crosslinking and mass spectrometry. PMID:32541649
Dynamic rewiring of the human interactome by interferon signaling. PMID:32539747
Extracellular Vesicle-Contained microRNA of C. elegans as a Tool to Decipher the Molecular Basis of Nematode Parasitism. PMID:32523895
Dynamic proteomic analysis of Aedes aegypti Aag-2 cells infected with Mayaro virus. PMID:32522239
Tandem Mass Tag (TMT)-based quantitative proteomics reveals potential targets associated with onset of Sub-clinical Mastitis in cows. PMID:32518370
A SARS-CoV-2-Human Protein-Protein Interaction Map Reveals Drug Targets and Potential Drug-Repurposing. PMID:32511329
Automation and low-cost proteomics for characterization of the protein corona: experimental methods for big data. PMID:32500258
A mouse SWATH-mass spectrometry reference spectral library enables deconvolution of species-specific proteomic alterations in human tumour xenografts. PMID:32493768
Quantitative proteomic analysis of trypsin-treated extracellular vesicles to identify the real-vesicular proteins. PMID:32489530
Identification of TUBB2A by quantitative proteomic analysis as a novel biomarker for the prediction of distant metastatic breast cancer. PMID:32489334
Pan-Proteomic Analysis and Elucidation of Protein Abundance among the Closely Related Brucella Species, Brucella abortus and Brucella melitensis. PMID:32486122
Determination of a Tumor-Promoting Microenvironment in Recurrent Medulloblastoma: A Multi-Omics Study of Cerebrospinal Fluid. PMID:32466393
Urinary proteomics links keratan sulfate degradation and lysosomal enzymes to early type 1 diabetes. PMID:32453760
Cdh1-APC Regulates Protein Synthesis and Stress Granules in Neurons through an FMRP-Dependent Mechanism. PMID:32434143
A Fast and Memory-Efficient Spectral Library Search Algorithm Using Locality-Sensitive Hashing. PMID:32415809
TGFam-Finder: a novel solution for target-gene family annotation in plants. PMID:32392385
The Hippo Pathway Transducers YAP1/TEAD Induce Acquired Resistance to Trastuzumab in HER2-Positive Breast Cancer. PMID:32365528
A SARS-CoV-2 protein interaction map reveals targets for drug repurposing. PMID:32353859
Actinobacterial Degradation of 2-Hydroxyisobutyric Acid Proceeds via Acetone and Formyl-CoA by Employing a Thiamine-Dependent Lyase Reaction. PMID:32351493
Inhibition of the autophagic protein ULK1 attenuates axonal degeneration in vitro and in vivo, enhances translation, and modulates splicing. PMID:32341448
Longitudinal Transcriptomic, Proteomic, and Metabolomic Analysis of Citrus limon Response to Graft Inoculation by Candidatus Liberibacter asiaticus. PMID:32338516
Trichoplein binds PCM1 and controls endothelial cell function by regulating autophagy. PMID:32337819
Moesin (MSN) as a Novel Proteome-Based Diagnostic Marker for Early Detection of Invasive Bladder Urothelial Carcinoma in Liquid-Based Cytology. PMID:32326232
A proximity-labeling proteomic approach to investigate invadopodia molecular landscape in breast cancer cells. PMID:32321993
BioHackathon 2015: Semantics of data for life sciences and reproducible research. PMID:32308977
Quantitative Proteomics Reveals Docosahexaenoic Acid-Mediated Neuroprotective Effects in Lipopolysaccharide-Stimulated Microglial Cells. PMID:32302149
Unravelling the proteomic landscape of extracellular vesicles in prostate cancer by density-based fractionation of urine. PMID:32284825
Identifying Sialylation Linkages at the Glycopeptide Level by Glycosyltransferase Labeling Assisted Mass Spectrometry (GLAMS). PMID:32271005
HDACi mediate UNG2 depletion, dysregulated genomic uracil and altered expression of oncoproteins and tumor suppressors in B- and T-cell lines. PMID:32264925
SUMOylation Protects FASN Against Proteasomal Degradation in Breast Cancer Cells Treated with Grape Leaf Extract. PMID:32244364
Temporal Dynamics of High-Density Lipoprotein Proteome in Diet-Controlled Subjects with Type 2 Diabetes. PMID:32235466
Comprehensive chemical proteomics for target deconvolution of the redox active drug auranofin. PMID:32199331
A dynamic charge-charge interaction modulates PP2A:B56 substrate recruitment. PMID:32195664
Proteome and Phosphoproteome Changes Associated with Prognosis in Acute Myeloid Leukemia. PMID:32192169
A multi-layered structure of the interphase chromocenter revealed by proximity-based biotinylation. PMID:32182352
Standardizing Proteomics Workflow for Liquid Chromatography-Mass Spectrometry: Technical and Statistical Considerations. PMID:32148359
In silico Prediction of Protein-Protein Interaction Network Induced by Manganese II in Meyerozyma guilliermondii. PMID:32140149
Probing the Environment of Emerin by Enhanced Ascorbate Peroxidase 2 (APEX2)-Mediated Proximity Labeling. PMID:32138363
Quantitative Profiling of the Human Substantia Nigra Proteome from Laser-capture Microdissected FFPE Tissue. PMID:32132230
A Small Effort for Researchers, a Big Gain for Soil Metaproteomics. PMID:32117118
Tetraspanin-6 negatively regulates exosome production. PMID:32108028
Site-specific 5-hydroxytryptophan incorporation into apolipoprotein A-I impairs cholesterol efflux activity and high-density lipoprotein biogenesis. PMID:32098873
Proline: an efficient and user-friendly software suite for large-scale proteomics. PMID:32096818
Immunoproteasome expression is associated with better prognosis and response to checkpoint therapies in melanoma. PMID:32060274
3D mapping of native extracellular matrix reveals cellular responses to the microenvironment. PMID:32055794
Maternal Larp6 controls oocyte development, chorion formation and elevation. PMID:32054660
Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network. PMID:32053352
Time-resolved proteomic profile of Amblyomma americanum tick saliva during feeding. PMID:32049966
Matrix-Matched Calibration Curves for Assessing Analytical Figures of Merit in Quantitative Proteomics. PMID:32037841
Exposure to the Florida red tide dinoflagellate, Karenia brevis, and its associated brevetoxins induces ecophysiological and proteomic alterations in Porites astreoides. PMID:32032360
Phenotypic Adaption of Pseudomonas aeruginosa by Hacking Siderophores Produced by Other Microorganisms. PMID:32024770
Kinase Inhibitor Treatment of Patients with Advanced Cancer Results in High Tumor Drug Concentrations and in Specific Alterations of the Tumor Phosphoproteome. PMID:32024067
The molecular aetiology of tRNA synthetase depletion: induction of a GCN4 amino acid starvation response despite homeostatic maintenance of charged tRNA levels. PMID:32016368
17β-Estradiol Delivered in Eye Drops: Evidence of Impact on Protein Networks and Associated Biological Processes in the Rat Retina through Quantitative Proteomics. PMID:32012756
Machine Learning Strategy That Leverages Large Data sets to Boost Statistical Power in Small-Scale Experiments. PMID:32009418
Proteomic Studies for the Investigation of γ-Globin Induction by Decitabine in Human Primary Erythroid Progenitor Cultures. PMID:31947809
Proteomics profiling and pathway analysis of hippocampal aging in rhesus monkeys. PMID:31941443
The Arabidopsis Protein CGL20 Is Required for Plastid 50S Ribosome Biogenesis. PMID:31937683
Guidance Document: Validation of a High-Performance Liquid Chromatography-Tandem Mass Spectrometry Immunopeptidomics Assay for the Identification of HLA Class I Ligands Suitable for Pharmaceutical Therapies. PMID:31937595
Large-scale and significant expression from pseudogenes in Sodalis glossinidius - a facultative bacterial endosymbiont. PMID:31922467
Development of a Retinal-Based Probe for the Profiling of Retinaldehyde Dehydrogenases in Cancer Cells. PMID:31893226
Sweet google O' mine-The importance of online search engines for MS-facilitated, database-independent identification of peptide-encoded book prefaces: A EUPA YPIC challenge entry. PMID:31890548
Peptidomic Analysis of Urine from Youths with Early Type 1 Diabetes Reveals Novel Bioactivity of Uromodulin Peptides In Vitro. PMID:31879271
Characterization of a human liver reference material fit for proteomics applications. PMID:31852895
The Proteomic Landscape of Pancreatic Ductal Adenocarcinoma Liver Metastases Identifies Molecular Subtypes and Associations with Clinical Response. PMID:31848187
ProTargetMiner as a proteome signature library of anticancer molecules for functional discovery. PMID:31844049
Dynamic proteome profiling of human pluripotent stem cell-derived pancreatic progenitors. PMID:31828876
Constrained De Novo Sequencing of neo-Epitope Peptides using Tandem Mass Spectrometry. PMID:31819927
Proteogenomics of Colorectal Cancer Liver Metastases: Complementing Precision Oncology with Phenotypic Data. PMID:31805664
Cardioinformatics: the nexus of bioinformatics and precision cardiology. PMID:31802103
Endothelial EphB4 maintains vascular integrity and transport function in adult heart. PMID:31782728
The Human Immunopeptidome Project: A Roadmap to Predict and Treat Immune Diseases. PMID:31744855
ProtRank: bypassing the imputation of missing values in differential expression analysis of proteomic data. PMID:31706265
The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics. PMID:31686107
Multifunctional temozolomide-loaded lipid superparamagnetic nanovectors: dual targeting and disintegration of glioblastoma spheroids by synergic chemotherapy and hyperthermia treatment. PMID:31663592
Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0. PMID:31599596
Structure of the inner kinetochore CCAN complex assembled onto a centromeric nucleosome. PMID:31578520
Mass Spectrometry-Based Plasma Proteomics: Considerations from Sample Collection to Achieving Translational Data. PMID:31573204
Quantitative Proteomics of Uukuniemi Virus-host Cell Interactions Reveals GBF1 as Proviral Host Factor for Phleboviruses. PMID:31570497
Inhibition of TOR in Chlamydomonas reinhardtii Leads to Rapid Cysteine Oxidation Reflecting Sustained Physiological Changes. PMID:31569396
Overexpression of HMG-CoA synthase promotes Arabidopsis root growth and adversely affects glucosinolate biosynthesis. PMID:31557302
Vegetative Cell and Spore Proteomes of Clostridioides difficile Show Finite Differences and Reveal Potential Protein Markers. PMID:31557040
An integrated workflow for crosslinking mass spectrometry. PMID:31556486
Mice depleted for Exchange Proteins Directly Activated by cAMP (Epac) exhibit irregular liver regeneration in response to partial hepatectomy. PMID:31551444
Liver proteome dataset of Sparus aurata exposed to low temperatures. PMID:31528672
Phosphorylation of the multifunctional signal transducer B-cell adaptor protein (BCAP) promotes recruitment of multiple SH2/SH3 proteins including GRB2. PMID:31527084
Tandem RNA isolation reveals functional rearrangement of RNA-binding proteins on CDKN1B/p27Kip1 3'UTRs in cisplatin treated cells. PMID:31522610
Proteomic mapping by rapamycin-dependent targeting of APEX2 identifies binding partners of VAPB at the inner nuclear membrane. PMID:31519755
HDL flux is higher in patients with nonalcoholic fatty liver disease. PMID:31503515
High-throughput proteomic analysis of FFPE tissue samples facilitates tumor stratification. PMID:31495056
Interrogation of a live-attenuated enterotoxigenic Escherichia coli vaccine highlights features unique to wild-type infection. PMID:31482013
A dataset describing a suite of novel antibody reagents for the RAS signaling network. PMID:31467290
Delineating the role of FANCA in glucose-stimulated insulin secretion in β cells through its protein interactome. PMID:31461451
Hepatic proteome network data in zebrafish (Danio rerio) liver following dieldrin exposure. PMID:31453304
Form III RubisCO-mediated transaldolase variant of the Calvin cycle in a chemolithoautotrophic bacterium. PMID:31451656
Proteomics Links Ubiquitin Chain Topology Change to Transcription Factor Activation. PMID:31444107
Strong anion exchange-mediated phosphoproteomics reveals extensive human non-canonical phosphorylation. PMID:31433507
Progress on Identifying and Characterizing the Human Proteome: 2019 Metrics from the HUPO Human Proteome Project. PMID:31430157
Vascular Endothelial Receptor Tyrosine Phosphatase: Identification of Novel Substrates Related to Junctions and a Ternary Complex with EPHB4 and TIE2. PMID:31427368
Matrisome Properties of Scaffolds Direct Fibroblasts in Idiopathic Pulmonary Fibrosis. PMID:31426504
Type II Epithelial-Mesenchymal Transition Upregulates Protein N-Glycosylation To Maintain Proteostasis and Extracellular Matrix Production. PMID:31424945
Bortezomib administered prior to temozolomide depletes MGMT, chemosensitizes glioblastoma with unmethylated MGMT promoter and prolongs animal survival. PMID:31413318
Differential Protein Expression Profiles of Bronchoalveolar Lavage Fluid Following Lipopolysaccharide-Induced Direct and Indirect Lung Injury in Mice. PMID:31373289
Data on the expression of SRPK1a in mammals. PMID:31334320
Towards a standardized bioinformatics infrastructure for N- and O-glycomics. PMID:31332201
Multibatch TMT Reveals False Positives, Batch Effects and Missing Values. PMID:31332098
Analysis of networks of host proteins in the early time points following HIV transduction. PMID:31315557
PTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline. PMID:31290668
A Targeted Mass Spectrometry Strategy for Developing Proteomic Biomarkers: A Case Study of Epithelial Ovarian Cancer. PMID:31289117
Proteomic study of the membrane components of signalling cascades of Botrytis cinerea controlled by phosphorylation. PMID:31285484
Quantitative Photo-crosslinking Mass Spectrometry Revealing Protein Structure Response to Environmental Changes. PMID:31274288
VE-PTP inhibition stabilizes endothelial junctions by activating FGD5. PMID:31267715
A molecular switch from STAT2-IRF9 to ISGF3 underlies interferon-induced gene transcription. PMID:31266943
Proteomics INTegrator (PINT): An Online Tool To Store, Query, and Visualize Large Proteomics Experiment Results. PMID:31260318
ARIH2 Is a Vif-Dependent Regulator of CUL5-Mediated APOBEC3G Degradation in HIV Infection. PMID:31253590
Cross-species complementation reveals conserved functions for EARLY FLOWERING 3 between monocots and dicots. PMID:31245666
Early-Onset Molecular Derangements in the Olfactory Bulb of Tg2576 Mice: Novel Insights Into the Stress-Responsive Olfactory Kinase Dynamics in Alzheimer's Disease. PMID:31244650
CTDP1 regulates breast cancer survival and DNA repair through BRCT-specific interactions with FANCI. PMID:31240132
Catabolism of Nucleic Acids by a Cystic Fibrosis Pseudomonas aeruginosa Isolate: An Adaptive Pathway to Cystic Fibrosis Sputum Environment. PMID:31214142
The heparin-binding proteome in normal pancreas and murine experimental acute pancreatitis. PMID:31211768
Novel interconnections of HOG signaling revealed by combined use of two proteomic software packages. PMID:31208443
Combined transcriptomic and proteomic analysis reveals a diversity of venom-related and toxin-like peptides expressed in the mat anemone Zoanthus natalensis (Cnidaria, Hexacorallia). PMID:31203412
Quantitative Proteome Analysis Reveals Changes in the Protein Landscape During Grape Berry Development With a Focus on Vacuolar Transport Proteins. PMID:31156689
A Combined N-terminomics and Shotgun Proteomics Approach to Investigate the Responses of Human Cells to Rapamycin and Zinc at the Mitochondrial Level. PMID:31154437
Identification of new transmembrane proteins concentrated at the nuclear envelope using organellar proteomics of mesenchymal cells. PMID:31142202
The human brain somatostatin interactome: SST binds selectively to P-type family ATPases. PMID:31136617
MiR-135a-5p Is Critical for Exercise-Induced Adult Neurogenesis. PMID:31130358
Cadmium tolerance pathway in Anopheles gambiae senso stricto. PMID:31121147
Airway response to respiratory syncytial virus has incidental antibacterial effects. PMID:31101811
MARMoSET - Extracting Publication-ready Mass Spectrometry Metadata from RAW Files. PMID:31097673
The most abundant cyst wall proteins of Acanthamoeba castellanii are lectins that bind cellulose and localize to distinct structures in developing and mature cyst walls. PMID:31095564
Junctional tumor suppressors interact with 14-3-3 proteins to control planar spindle alignment. PMID:31088859
Proteomics Standards Initiative Extended FASTA Format. PMID:31081335
R-DeeP: Proteome-wide and Quantitative Identification of RNA-Dependent Proteins by Density Gradient Ultracentrifugation. PMID:31076284
Protein expression profiling of plasma and lungs at different stages of metastatic development in a human triple negative breast cancer xenograft model. PMID:31042781
Exploring Regulation of Protein O-Glycosylation in Isogenic Human HEK293 Cells by Differential O-Glycoproteomics. PMID:31040225
Molecular insights into an ancient form of Paget's disease of bone. PMID:31036632
The Plethora of Angiotensin-Converting Enzyme-Processed Peptides in Mouse Plasma. PMID:31021607
MetaMSD: meta analysis for mass spectrometry data. PMID:30993040
Plasma protein adsorption on Fe3O4-PEG nanoparticles activates the complement system and induces an inflammatory response. PMID:30988608
Biomarkers of post-discharge mortality among children with complicated severe acute malnutrition. PMID:30979939
Sensitive Quantitative Proteomics of Human Hematopoietic Stem and Progenitor Cells by Data-independent Acquisition Mass Spectrometry. PMID:30975897
ECT2 associated to PRICKLE1 are poor-prognosis markers in triple-negative breast cancer. PMID:30971775
A complex containing lysine-acetylated actin inhibits the formin INF2. PMID:30962575
A fungal substrate mimicking molecule suppresses plant immunity via an inter-kingdom conserved motif. PMID:30952847
WNT5A is transported via lipoprotein particles in the cerebrospinal fluid to regulate hindbrain morphogenesis. PMID:30940800
Sweet and Sour Ehrlichia: Glycoproteomics and Phosphoproteomics Reveal New Players in Ehrlichia ruminantium Physiology and Pathogenesis. PMID:30930869
SUMOylation promotes protective responses to DNA-protein crosslinks. PMID:30914427
A conserved major facilitator superfamily member orchestrates a subset of O-glycosylation to aid macrophage tissue invasion. PMID:30910009
Evaluating Chromatographic Approaches for the Quantitative Analysis of a Human Proteome on Orbitrap-Based Mass Spectrometry Systems. PMID:30884231
Assembly of a heptameric STRIPAK complex is required for coordination of light-dependent multicellular fungal development with secondary metabolism in Aspergillus nidulans. PMID:30883543
Evaluation of linear models and missing value imputation for the analysis of peptide-centric proteomics. PMID:30871482
Consequences of impaired 1-MDa TIC complex assembly for the abundance and composition of chloroplast high-molecular mass protein complexes. PMID:30865669
Water stress combined with sulfur deficiency in pea affects yield components but mitigates the effect of deficiency on seed globulin composition. PMID:30855667
Boosting to Amplify Signal with Isobaric Labeling (BASIL) Strategy for Comprehensive Quantitative Phosphoproteomic Characterization of Small Populations of Cells. PMID:30843680
The impact of the glucagon-like peptide 1 receptor agonist liraglutide on the streptozotocin-induced diabetic mouse kidney proteome. PMID:30806030
Proteome profiling of triple negative breast cancer cells overexpressing NOD1 and NOD2 receptors unveils molecular signatures of malignant cell proliferation. PMID:30791886
Both cold and sub-zero acclimation induce cell wall modification and changes in the extracellular proteome in Arabidopsis thaliana. PMID:30783145
Engineered transfer RNAs for suppression of premature termination codons. PMID:30778053
A deep proteome and transcriptome abundance atlas of 29 healthy human tissues. PMID:30777892
Intact protein mass spectrometry reveals intraspecies variations in venom composition of a local population of Vipera kaznakovi in Northeastern Turkey. PMID:30763806
Chaperone activation and client binding of a 2-cysteine peroxiredoxin. PMID:30737390
Integration of Two In-depth Quantitative Proteomics Approaches Determines the Kallikrein-related Peptidase 7 (KLK7) Degradome in Ovarian Cancer Cell Secretome. PMID:30705123
Quantitative profiling brain proteomes revealed mitochondrial dysfunction in Alzheimer's disease. PMID:30691479
Human Testis Phosphoproteome Reveals Kinases as Potential Targets in Spermatogenesis and Testicular Cancer. PMID:30683686
Podocyte GSK3 is an evolutionarily conserved critical regulator of kidney function. PMID:30679422
Proteo-Transcriptomic Dynamics of Cellular Response to HIV-1 Infection. PMID:30659199
Sucrose Metabolism in Haloarchaea: Reassessment Using Genomics, Proteomics, and Metagenomics. PMID:30658981
Naja annulifera Snake: New insights into the venom components and pathogenesis of envenomation. PMID:30657756
Molecular mechanisms of bleeding disorderassociated GFI1BQ287* mutation and its affected pathways in megakaryocytes and platelets. PMID:30655368
Data-independent Acquisition Improves Quantitative Cross-linking Mass Spectrometry. PMID:30651306
Clustering of Tau fibrils impairs the synaptic composition of α3-Na+/K+-ATPase and AMPA receptors. PMID:30630857
A Mass Spectrometry-Based Profiling of Interactomes of Viral DDB1- and Cullin Ubiquitin Ligase-Binding Proteins Reveals NF-κB Inhibitory Activity of the HIV-2-Encoded Vpx. PMID:30619335
Decreased Antibiotic Susceptibility Driven by Global Remodeling of the Klebsiella pneumoniae Proteome. PMID:30617156
Predicting peptide presentation by major histocompatibility complex class I: an improved machine learning approach to the immunopeptidome. PMID:30611210
Membrane Proteomes and Ion Transporters in Bacillus anthracis and Bacillus subtilis Dormant and Germinating Spores. PMID:30602489
Human Platelet Protein Ubiquitylation and Changes following GPVI Activation. PMID:30597505
Cross-ID: Analysis and Visualization of Complex XL-MS-Driven Protein Interaction Networks. PMID:30575379
Combined Targeted Analysis of Metabolites and Proteins in Tear Fluid With Regard to Clinical Applications. PMID:30564511
Shotgun proteomics data on the impact of hyperglycaemia on platelet protein acetylation by aspirin. PMID:30560156
Laboratory strains of Bacillus anthracis exhibit pervasive alteration in expression of proteins related to sporulation under laboratory conditions relative to genetically related wild strains. PMID:30557394
Intelligence Algorithms for Protein Classification by Mass Spectrometry. PMID:30534555
Glucose intake hampers PKA-regulated HSP90 chaperone activity. PMID:30516470
Proteome-Wide Analysis of Cysteine Reactivity during Effector-Triggered Immunity. PMID:30510037
Profiling the proteomic inflammatory state of human astrocytes using DIA mass spectrometry. PMID:30501627
Metabolic adaptation of wheat grain contributes to a stable filling rate under heat stress. PMID:30476278
Deep proteome of human nNOS/NOS1-positive versus MOCK SH-SY5Y neuroblastoma cells under full nutrition, serum free starvation and rapamycin treatment. PMID:30456249
PPARγ maintains the metabolic heterogeneity and homeostasis of renal tubules. PMID:30420298
Novel protein signatures suggest progression to muscular invasiveness in bladder cancer. PMID:30419021
Proteome evolution under non-substitutable resource limitation. PMID:30405128
Predicting bacterial growth conditions from mRNA and protein abundances. PMID:30388153
Soluble Siglec-14 glycan-recognition protein is generated by alternative splicing and suppresses myeloid inflammatory responses. PMID:30377253
Organisms with alternative genetic codes resolve unassigned codons via mistranslation and ribosomal rescue. PMID:30375330
Nitric oxide contributes to protein homeostasis by S-nitrosylations of the chaperone HSPA8 and the ubiquitin ligase UBE2D. PMID:30368041
SNAREs SYP121 and SYP122 Mediate the Secretion of Distinct Cargo Subsets. PMID:30348815
Peanut Stunt Virus and Its Satellite RNA Trigger Changes in Phosphorylation in N. benthamiana Infected Plants at the Early Stage of the Infection. PMID:30340407
PWWP2A binds distinct chromatin moieties and interacts with an MTA1-specific core NuRD complex. PMID:30327463
Probing the contribution of individual polypeptide GalNAc-transferase isoforms to the O-glycoproteome by inducible expression in isogenic cell lines. PMID:30327431
Mining the cellular inventory of pyridoxal phosphate-dependent enzymes with functionalized cofactor mimics. PMID:30297752
Changes in mRNA abundance drive shuttling of RNA binding proteins, linking cytoplasmic RNA degradation to transcription. PMID:30281021
Chromosome 17 Missing Proteins: Recent Progress and Future Directions as Part of the neXt-MP50 Challenge. PMID:30280577
Quantitative Proteomics of the Mitotic Chromosome Scaffold Reveals the Association of BAZ1B with Chromosomal Axes. PMID:30266865
AP-4 vesicles contribute to spatial control of autophagy via RUSC-dependent peripheral delivery of ATG9A. PMID:30262884
Updates of the In-Gel Digestion Method for Protein Analysis by Mass Spectrometry. PMID:30259661
Identification of Novel Natural Substrates of Fibroblast Activation Protein-alpha by Differential Degradomics and Proteomics. PMID:30257879
Time-resolved proteomics of adenovirus infected cells. PMID:30252905
iProX: an integrated proteome resource. PMID:30252093
Proteome Profiling by Label-Free Mass Spectrometry Reveals Differentiated Response of Campylobacter jejuni 81-176 to Sublethal Concentrations of Bile Acids. PMID:30246935
IgG-Independent Co-aggregation of FcεRI and FcγRIIB Results in LYN- and SHIP1-Dependent Tyrosine Phosphorylation of FcγRIIB in Murine Bone Marrow-Derived Mast Cells. PMID:30210494
Evaluation of Unconventional Protein Secretion by Saccharomyces cerevisiae and other Fungi. PMID:30200367
High-throughput and high-sensitivity phosphoproteomics with the EasyPhos platform. PMID:30190555
Combining discovery and targeted proteomics reveals a prognostic signature in oral cancer. PMID:30185791
A Bordetella pertussis MgtC homolog plays a role in the intracellular survival. PMID:30161230
Dissecting the subcellular membrane proteome reveals enrichment of H+ (co-)transporters and vesicle trafficking proteins in acidic zones of Chara internodal cells. PMID:30157181
Arabidopsis RNA processing factor SERRATE regulates the transcription of intronless genes. PMID:30152752
Plasmodium Parasites Viewed through Proteomics. PMID:30146456
Deciphering the oviductal extracellular vesicles content across the estrous cycle: implications for the gametes-oviduct interactions and the environment of the potential embryo. PMID:30134841
Balancing sufficiency and impact in reporting standards for mass spectrometry imaging experiments. PMID:30124809
Spatial and temporal proteome dynamics of glioma cells during oncolytic adenovirus Delta-24-RGD infection. PMID:30123426
Gingival Exudatome Dynamics Implicate Inhibition of the Alternative Complement Pathway in the Protective Action of the C3 Inhibitor Cp40 in Nonhuman Primate Periodontitis. PMID:30111112
Evaluation of Serum Glycoprotein Biomarker Candidates for Detection of Esophageal Adenocarcinoma and Surveillance of Barrett's Esophagus. PMID:30097534
Comparative proteomics reveals a diagnostic signature for pulmonary head-and-neck cancer metastasis. PMID:30097507
Multi-region proteome analysis quantifies spatial heterogeneity of prostate tissue biomarkers. PMID:30090875
PUX10 Is a Lipid Droplet-Localized Scaffold Protein That Interacts with CELL DIVISION CYCLE48 and Is Involved in the Degradation of Lipid Droplet Proteins. PMID:30087207
Comprehensive Snake Venomics of the Okinawa Habu Pit Viper, Protobothrops flavoviridis, by Complementary Mass Spectrometry-Guided Approaches. PMID:30060607
Global quantitative TPA-based proteomics of mouse brain structures reveals significant alterations in expression of proteins involved in neuronal plasticity during aging. PMID:30026405
Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei. PMID:30021884
Universal Plant Phosphoproteomics Workflow and Its Application to Tomato Signaling in Response to Cold Stress. PMID:30006488
The value of universally available raw NMR data for transparency, reproducibility, and integrity in natural product research. PMID:30003207
Proteomics and Phosphoproteomics of Heat Stress-Responsive Mechanisms in Spinach. PMID:29997633
Screening for biomarkers reflecting the progression of Babesia microti infection. PMID:29970143
Quantitative Proteomic Analysis Identifies AHNAK (Neuroblast Differentiation-associated Protein AHNAK) as a Novel Candidate Biomarker for Bladder Urothelial Carcinoma Diagnosis by Liquid-based Cytology. PMID:29950347
Site-specific characterization of endogenous SUMOylation across species and organs. PMID:29942033
Temperature-induced changes in the wheat phosphoproteome reveal temperature-regulated interconversion of phosphoforms. PMID:29939309
Proteomics Reveals Scope of Mycolactone-mediated Sec61 Blockade and Distinctive Stress Signature. PMID:29915147
Public proteomics data: How the field has evolved from sceptical inquiry to the promise of in silico proteomics. PMID:29900110
⿿Comparing the proteome of snap frozen, RNAlater preserved, and formalin-fixed paraffin-embedded human tissue samples. PMID:29900094
Quantitative phosphoproteomic analysis of the molecular substrates of sleep need. PMID:29899451
Negative feedback via RSK modulates Erk-dependent progression from naïve pluripotency. PMID:29895711
Encoding human serine phosphopeptides in bacteria for proteome-wide identification of phosphorylation-dependent interactions. PMID:29889213
Calcium-activated Chloride Channel Regulator 1 (CLCA1) Controls Mucus Expansion in Colon by Proteolytic Activity. PMID:29885864
The coupling of transcriptome and proteome adaptation during development and heat stress response of tomato pollen. PMID:29884134
Weibel-Palade Body Localized Syntaxin-3 Modulates Von Willebrand Factor Secretion From Endothelial Cells. PMID:29880488
Synergy of Sodium Nitroprusside and Nitrate in Inhibiting the Activity of Sulfate Reducing Bacteria in Oil-Containing Bioreactors. PMID:29867883
Unraveling Gardnerella vaginalis Surface Proteins Using Cell Shaving Proteomics. PMID:29867878
ProteomeTools: Systematic Characterization of 21 Post-translational Protein Modifications by Liquid Chromatography Tandem Mass Spectrometry (LC-MS/MS) Using Synthetic Peptides. PMID:29848782
Aggregatibacter actinomycetemcomitans H-NS promotes biofilm formation and alters protein dynamics of other species within a polymicrobial oral biofilm. PMID:29844920
Biochemical Characterization of Isoniazid-resistant Mycobacterium tuberculosis: Can the Analysis of Clonal Strains Reveal Novel Targetable Pathways? PMID:29844232
Metaproteomics method to determine carbon sources and assimilation pathways of species in microbial communities. PMID:29844191
Dual phosphorylation of Ric-8A enhances its ability to mediate G protein α subunit folding and to stimulate guanine nucleotide exchange. PMID:29844055
Minimal Information About an Immuno-Peptidomics Experiment (MIAIPE). PMID:29791771
Loss of TIGAR Induces Oxidative Stress and Meiotic Defects in Oocytes from Obese Mice. PMID:29776966
Aurora B opposes PP1 function in mitosis by phosphorylating the conserved PP1-binding RVxF motif in PP1 regulatory proteins. PMID:29764992
Fragment-derived inhibitors of human N-myristoyltransferase block capsid assembly and replication of the common cold virus. PMID:29760414
Differentially abundant proteins associated with heterosis in the primary roots of popcorn. PMID:29758068
Quantitative Proteomics Analysis of Sporadic Medullary Thyroid Cancer Reveals FN1 as a Potential Novel Candidate Prognostic Biomarker. PMID:29739896
Identification of brain antigens recognized by autoantibodies in experimental autoimmune encephalomyelitis-induced animals treated with etomoxir or interferon-β. PMID:29728570
Evaluation of NCI-7 Cell Line Panel as a Reference Material for Clinical Proteomics. PMID:29718670
Quantitative proteomic analysis of pancreatic cyst fluid proteins associated with malignancy in intraductal papillary mucinous neoplasms. PMID:29713252
NUFIP1 is a ribosome receptor for starvation-induced ribophagy. PMID:29700228
Expansion of DUB functionality generated by alternative isoforms - USP35, a case study. PMID:29685892
The phosphorylated redox proteome of Chlamydomonas reinhardtii: Revealing novel means for regulation of protein structure and function. PMID:29673699
Development of a Prototype System for Archiving Integrative/Hybrid Structure Models of Biological Macromolecules. PMID:29657133
Comparative qualitative phosphoproteomics analysis identifies shared phosphorylation motifs and associated biological processes in evolutionary divergent plants. PMID:29654922
Remote Atmospheric Pressure Infrared Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry (Remote IR-MALDI MS) of Proteins. PMID:29653959
Polylysine is a Proteostasis Network-Engaging Structural Determinant. PMID:29634277
Extensive and systematic rewiring of histone post-translational modifications in cancer model systems. PMID:29618087
Quantifying extracellular matrix turnover in human lung scaffold cultures. PMID:29615673
Proteomic fingerprinting in HIV/HCV co-infection reveals serum biomarkers for the diagnosis of fibrosis staging. PMID:29608613
Interactome analysis of transforming growth factor-β-activated kinase 1 in Helicobacter pylori-infected cells revealed novel regulators tripartite motif 28 and CDC37. PMID:29581850
Comparative Proteomics of Dying and Surviving Cancer Cells Improves the Identification of Drug Targets and Sheds Light on Cell Life/Death Decisions. PMID:29572246
Benchmarking common quantification strategies for large-scale phosphoproteomics. PMID:29535314
Paclitaxel Treatment and Proprotein Convertase 1/3 (PC1/3) Knockdown in Macrophages is a Promising Antiglioma Strategy as Revealed by Proteomics and Cytotoxicity Studies. PMID:29531019
Murine Gbp1 and Gbp2 are ubiquitinated independent of Toxoplasma gondii infection. PMID:29510761
Phosphoproteomics Analysis Identifies Novel Candidate Substrates of the Nonreceptor Tyrosine Kinase, Src-related Kinase Lacking C-terminal Regulatory Tyrosine and N-terminal Myristoylation Sites (SRMS). PMID:29496907
Mass spectrometric evidence for neuropeptide-amidating enzymes in Caenorhabditis elegans. PMID:29487130
"One-Pot" Sample Processing Method for Proteome-Wide Analysis of Microbial Cells and Spores. PMID:29484825
Comparative iTRAQ analysis of protein abundance in the human sinoatrial node and working cardiomyocytes. PMID:29484645
Comparative and network-based proteomic analysis of low dose ethanol- and lipopolysaccharide-induced macrophages. PMID:29481576
A lost opportunity for science: journals promote data sharing in metabolomics but do not enforce it. PMID:29479297
Quantitative Proteomics of Synaptosomal Fractions in a Rat Overexpressing Human DISC1 Gene Indicates Profound Synaptic Dysregulation in the Dorsal Striatum. PMID:29467617
Proteome analysis of Aspergillus flavus isolate-specific responses to oxidative stress in relationship to aflatoxin production capability. PMID:29467403
Angiogenic patterning by STEEL, an endothelial-enriched long noncoding RNA. PMID:29467285
Proteomic profiling of VCP substrates links VCP to K6-linked ubiquitylation and c-Myc function. PMID:29467282
Proteomic analysis of the human retina reveals region-specific susceptibilities to metabolic- and oxidative stress-related diseases. PMID:29466423
BAG3 Overexpression and Cytoprotective Autophagy Mediate Apoptosis Resistance in Chemoresistant Breast Cancer Cells. PMID:29462756
Novel proteins from proteomic analysis of the trunk disease fungus Lasiodiplodia theobromae (Botryosphaeriaceae). PMID:29450146
Shotgun proteomics deciphered age/division of labor-related functional specification of three honeybee (Apis mellifera L.) exocrine glands. PMID:29447197
Quantitative proteome profile of water deficit stress responses in eastern cottonwood (Populus deltoides) leaves. PMID:29447168
The Unique Features of Proteins Depicting the Chicken Amniotic Fluid. PMID:29444982
Initiating Events in Direct Cardiomyocyte Reprogramming. PMID:29444441
Phosphoproteomic analysis of the antitumor effects of ginsenoside Rg3 in human breast cancer cells. PMID:29435015
Mass Spectrometry-Based Proteomic Profiling of Thrombotic Material Obtained by Endovascular Thrombectomy in Patients with Ischemic Stroke. PMID:29414888
Analysis of essential gene dynamics under antibiotic stress in Streptococcus sanguinis. PMID:29393020
Large-scale intact glycopeptide identification by Mascot database search. PMID:29391424
The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data. PMID:29386051
Studies on the Proteome of Human Hair - Identification of Histones and Deamidated Keratins. PMID:29371649
Proteomics Profiling of CLL Versus Healthy B-cells Identifies Putative Therapeutic Targets and a Subtype-independent Signature of Spliceosome Dysregulation. PMID:29367434
Spatial Tissue Proteomics Quantifies Inter- and Intratumor Heterogeneity in Hepatocellular Carcinoma (HCC). PMID:29363612
Adrenergic receptor stimulation suppresses oxidative metabolism in isolated rat islets and Min6 cells. PMID:29360563
The histone methyltransferase DOT1L inhibits osteoclastogenesis and protects against osteoporosis. PMID:29348610
Flagellin Glycoproteomics of the Periodontitis Associated Pathogen Selenomonas sputigena Reveals Previously Not Described O-glycans and Rhamnose Fragment Rearrangement Occurring on the Glycopeptides. PMID:29339411
Molecular and functional signatures in a novel Alzheimer's disease mouse model assessed by quantitative proteomics. PMID:29338754
Donor age affects proteome composition of tenocyte-derived engineered tendon. PMID:29338716
The Plantain Proteome, a Focus on Allele Specific Proteins Obtained from Plantain Fruits. PMID:29333696
Comparative Venomics of the Vipera ammodytes transcaucasiana and Vipera ammodytes montandoni from Turkey Provides Insights into Kinship. PMID:29301241
Reciprocal Regulation of the TOR Kinase and ABA Receptor Balances Plant Growth and Stress Response. PMID:29290610
Exploring the molecular complexity of Triatoma dimidiata sialome. PMID:29288089
Combined 15N-Labeling and TandemMOAC Quantifies Phosphorylation of MAP Kinase Substrates Downstream of MKK7 in Arabidopsis. PMID:29276520
Hypoxic 3D in vitro culture models reveal distinct resistance processes to TKIs in renal cancer cells. PMID:29270287
Stoichiometry, Absolute Abundance, and Localization of Proteins in the Bacillus cereus Spore Coat Insoluble Fraction Determined Using a QconCAT Approach. PMID:29260567
On the Reproducibility of Label-Free Quantitative Cross-Linking/Mass Spectrometry. PMID:29256016
Specificity of Phosphorylation Responses to Mitogen Activated Protein (MAP) Kinase Pathway Inhibitors in Melanoma Cells. PMID:29255136
Mechanisms Connecting the Conserved Protein Kinases Ssp1, Kin1, and Pom1 in Fission Yeast Cell Polarity and Division. PMID:29249658
Proteomic Characterization of Prostate Cancer to Distinguish Nonmetastasizing and Metastasizing Primary Tumors and Lymph Node Metastases. PMID:29248718
High-throughput and Sensitive Immunopeptidomics Platform Reveals Profound Interferonγ-Mediated Remodeling of the Human Leukocyte Antigen (HLA) Ligandome. PMID:29242379
Relative Quantitative Proteomic Analysis of Brucella abortus Reveals Metabolic Adaptation to Multiple Environmental Stresses. PMID:29238329
N-linked Glycan Micro-heterogeneity in Glycoproteins of Arabidopsis. PMID:29237727
Proteome-wide Analysis of Lysine 2-hydroxyisobutyrylation in Developing Rice (Oryza sativa) Seeds. PMID:29235492
Eml1 loss impairs apical progenitor spindle length and soma shape in the developing cerebral cortex. PMID:29229923
Multi-field query expansion is effective for biomedical dataset retrieval. PMID:29220457
Tetraspanin CD63 Bridges Autophagic and Endosomal Processes To Regulate Exosomal Secretion and Intracellular Signaling of Epstein-Barr Virus LMP1. PMID:29212935
Optimization of quantitative proteomic analysis of clots generated from plasma of patients with venous thromboembolism. PMID:29209155
Proteomics and metabolomics identify molecular mechanisms of aging potentially predisposing for chronic lymphocytic leukemia. PMID:29196338
Spectral Library Based Analysis of Arginine Phosphorylations in Staphylococcus aureus. PMID:29183913
Cerebrospinal fluid markers to distinguish bacterial meningitis from cerebral malaria in children. PMID:29181450
Proteomic profiling identifies markers for inflammation-related tumor-fibroblast interaction. PMID:29176937
Comparison of Quantitative Mass Spectrometry Platforms for Monitoring Kinase ATP Probe Uptake in Lung Cancer. PMID:29164889
Quantitative Mass Spectrometry-Based Proteomic Profiling for Precision Medicine in Prostate Cancer. PMID:29164064
A Comparative Proteome Profile of Female Mouse Gonads Suggests a Tight Link between the Electron Transport Chain and Meiosis Initiation. PMID:29158290
Scrambled eggs: Proteomic portraits and novel biomarkers of egg quality in zebrafish (Danio rerio). PMID:29145436
The Ndc80 complex targets Bod1 to human mitotic kinetochores. PMID:29142109
Fast, axis-agnostic, dynamically summarized storage and retrieval for mass spectrometry data. PMID:29141005
Systematic proteomic analysis of LRRK2-mediated Rab GTPase phosphorylation establishes a connection to ciliogenesis. PMID:29125462
Cell-type-specific metabolic labeling of nascent proteomes in vivo. PMID:29106408
'Hotspots' of Antigen Presentation Revealed by Human Leukocyte Antigen Ligandomics for Neoantigen Prioritization. PMID:29104575
Preservation of the metaproteome: variability of protein preservation in ancient dental calculus. PMID:29098079
RNA sequencing and proteomics approaches reveal novel deficits in the cortex of Mecp2-deficient mice, a model for Rett syndrome. PMID:29090078
Quantitative proteomic Analysis Reveals up-regulation of caveolin-1 in FOXP3-overexpressed human gastric cancer cells. PMID:29089565
Proteomics dataset: The colon mucosa from inflammatory bowel disease patients, gastrointestinal asymptomic rheumatoid arthritis patients, and controls. PMID:29085871
Immune Repertoire after Immunization As Seen by Next-Generation Sequencing and Proteomics. PMID:29085363
Increased serotransferrin and ceruloplasmin turnover in diet-controlled patients with type 2 diabetes. PMID:29079528
Network-Driven Proteogenomics Unveils an Aging-Related Imbalance in the Olfactory IκBα-NFκB p65 Complex Functionality in Tg2576 Alzheimer's Disease Mouse Model. PMID:29077059
Identification of novel substrates of Shigella T3SA through analysis of its virulence plasmid-encoded secretome. PMID:29073283
Green-fruited Solanum habrochaites lacks fruit-specific carotenogenesis due to metabolic and structural blocks. PMID:29048567
Advances in the Chromosome-Centric Human Proteome Project: looking to the future. PMID:29039980
Quantitative proteomics of a B12 -dependent alga grown in coculture with bacteria reveals metabolic tradeoffs required for mutualism. PMID:29034959
Proteolytic signatures define unique thrombin-derived peptides present in human wound fluid in vivo. PMID:29030565
Native KCC2 interactome reveals PACSIN1 as a critical regulator of synaptic inhibition. PMID:29028184
MALDI Mass Spectrometry Imaging: A Novel Tool for the Identification and Classification of Amyloidosis. PMID:28994248
Chromatin proteomics reveals novel combinatorial histone modification signatures that mark distinct subpopulations of macrophage enhancers. PMID:28981749
The Encyclopedia of Proteome Dynamics: a big data ecosystem for (prote)omics. PMID:28981707
Selective aggregation of the splicing factor Hsh155 suppresses splicing upon genotoxic stress. PMID:28978642
In-depth phenotyping of lymphoblastoid cells suggests selective cellular vulnerability in Marinesco-Sjögren syndrome. PMID:28978133
Fast hyperbaric decompression after heliox saturation altered the brain proteome in rats. PMID:28977037
Crosstalk between glial and glioblastoma cells triggers the "go-or-grow" phenotype of tumor cells. PMID:28969644
Systematic Proteogenomic Approach To Exploring a Novel Function for NHERF1 in Human Reproductive Disorder: Lessons for Exploring Missing Proteins. PMID:28960081
Compliance with minimum information guidelines in public metabolomics repositories. PMID:28949328
TNFα affects CREB-mediated neuroprotective signaling pathways of synaptic plasticity in neurons as revealed by proteomics and phospho-proteomics. PMID:28947966
Quantitative multiplexed proteomics of Taenia solium cysts obtained from the skeletal muscle and central nervous system of pigs. PMID:28945737
Phosphoproteome-based kinase activity profiling reveals the critical role of MAP2K2 and PLK1 in neuronal autophagy. PMID:28933595
Discovery of Tamoxifen and N-Desmethyl Tamoxifen Protein Targets in MCF-7 Cells Using Large-Scale Protein Folding and Stability Measurements. PMID:28927269
Spectral Libraries for SWATH-MS Assays for Drosophila melanogaster and Solanum lycopersicum. PMID:28922568
A proteomic atlas of insulin signalling reveals tissue-specific mechanisms of longevity assurance. PMID:28916541
Perturbed cholesterol and vesicular trafficking associated with dengue blocking in Wolbachia-infected Aedes aegypti cells. PMID:28904344
Heterodimeric capping protein is required for stereocilia length and width regulation. PMID:28899994
Monitoring storage induced changes in the platelet proteome employing label free quantitative mass spectrometry. PMID:28887518
Proline-dependent and basophilic kinases phosphorylate human TRPC6 at serine 14 to control channel activity through increased membrane expression. PMID:28877958
A Stat6/Pten Axis Links Regulatory T Cells with Adipose Tissue Function. PMID:28877454
Interactome analysis of transcriptional coactivator multiprotein bridging factor 1 unveils a yeast AP-1-like transcription factor involved in oxidation tolerance of mycopathogen Beauveria bassiana. PMID:28871395
Proteomics Standards Initiative: Fifteen Years of Progress and Future Work. PMID:28849660
Pathogenic Leptospires Modulate Protein Expression and Post-translational Modifications in Response to Mammalian Host Signals. PMID:28848720
Updating In Vivo and In Vitro Phosphorylation and Methylation Sites of Voltage-Gated Kv7.2 Potassium Channels. PMID:28834300
Olfactory bulb neuroproteomics reveals a chronological perturbation of survival routes and a disruption of prohibitin complex during Alzheimer's disease progression. PMID:28831118
Automated assembly of species metabolomes through data submission into a public repository. PMID:28830114
Proteomic Response of Pseudomonas aeruginosa PAO1 Adhering to Solid Surfaces. PMID:28824592
Joint inflammation related citrullination of functional arginines in extracellular proteins. PMID:28811641
Identification and quantification of plasma free salusin-β, an endogenous parasympathomimetic peptide. PMID:28811505
Multiplexed Liquid Chromatography-Multiple Reaction Monitoring Mass Spectrometry Quantification of Cancer Signaling Proteins. PMID:28808993
Cryptosporidium parvum vaccine candidates are incompletely modified with O-linked-N-acetylgalactosamine or contain N-terminal N-myristate and S-palmitate. PMID:28792526
Bronchoalveolar Lavage Fluid Protein Expression in Acute Respiratory Distress Syndrome Provides Insights into Pathways Activated in Subjects with Different Outcomes. PMID:28785034
Multi-omics Analysis Sheds Light on the Evolution and the Intracellular Lifestyle Strategies of Spotted Fever Group Rickettsia spp. PMID:28775717
Quantitative Temporal in Vivo Proteomics Deciphers the Transition of Virus-Driven Myeloid Cells into M2 Macrophages. PMID:28768414
New criteria for the molecular identification of cereal grains associated with archaeological artefacts. PMID:28747692
Proteomic profiling of early degenerative retina of RCS rats. PMID:28730077
pyQms enables universal and accurate quantification of mass spectrometry data. PMID:28729385
Quantitative Assessment of the Effects of Trypsin Digestion Methods on Affinity Purification-Mass Spectrometry-based Protein-Protein Interaction Analysis. PMID:28726418
The influence of simulated microgravity on the proteome of Daphnia magna. PMID:28725717
Selective Affinity Enrichment of Nitrotyrosine-Containing Peptides for Quantitative Analysis in Complex Samples. PMID:28714690
System-Level and Granger Network Analysis of Integrated Proteomic and Metabolomic Dynamics Identifies Key Points of Grape Berry Development at the Interface of Primary and Secondary Metabolism. PMID:28713396
Respiratory Pathways Reconstructed by Multi-Omics Analysis in Melioribacter roseus, Residing in a Deep Thermal Aquifer of the West-Siberian Megabasin. PMID:28713355
PAT-H-MS coupled with laser microdissection to study histone post-translational modifications in selected cell populations from pathology samples. PMID:28702092
Long-Term Cigarette Smoke Exposure and Changes in MiRNA Expression and Proteome in Non-Small-Cell Lung Cancer. PMID:28692419
Changes of Protein Turnover in Aging Caenorhabditis elegans. PMID:28679685
Sec61 blockade by mycolactone inhibits antigen cross-presentation independently of endosome-to-cytosol export. PMID:28679634
Pseudomonas aeruginosa cells attached to a surface display a typical proteome early as 20 minutes of incubation. PMID:28678862
Comparative Proteomic Analysis of Flag Leaves Reveals New Insight into Wheat Heat Adaptation. PMID:28676819
HLA-E Presents Glycopeptides from the Mycobacterium tuberculosis Protein MPT32 to Human CD8+ T cells. PMID:28676677
Characterization of the Extracellular Matrix of Normal and Diseased Tissues Using Proteomics. PMID:28675934
Comparison of fractionation proteomics for local SWATH library building. PMID:28664598
RhoA Inhibitor Treatment At Acute Phase of Spinal Cord Injury May Induce Neurite Outgrowth and Synaptogenesis. PMID:28659490
Somatostatin binds to the human amyloid β peptide and favors the formation of distinct oligomers. PMID:28650319
The hepatocyte proteome in organotypic rat liver models and the influence of the local microenvironment. PMID:28649179
A PLC-γ1 Feedback Pathway Regulates Lck Substrate Phosphorylation at the T-Cell Receptor and SLP-76 Complex. PMID:28644030
Short-chain alkanes fuel mussel and sponge Cycloclasticus symbionts from deep-sea gas and oil seeps. PMID:28628098
Characterisation of the circulating acellular proteome of healthy sheep using LC-MS/MS-based proteomics analysis of serum. PMID:28615994
Reconstruction of pathway modification induced by nicotinamide using multi-omic network analyses in triple negative breast cancer. PMID:28615672
Time-Dependent, HIV-Tat-Induced Perturbation of Human Neurons In Vitro: Towards a Model for the Molecular Pathology of HIV-Associated Neurocognitive Disorders. PMID:28611588
An Optimized Shotgun Strategy for the Rapid Generation of Comprehensive Human Proteomes. PMID:28601559
Salinity-Induced Palmella Formation Mechanism in Halotolerant Algae Dunaliella salina Revealed by Quantitative Proteomics and Phosphoproteomics. PMID:28588593
Data from proteome analysis of Lasiodiplodia theobromae (Botryosphaeriaceae). PMID:28580409
Proteomic analysis of the phycobiliprotein antenna of the cryptophyte alga Guillardia theta cultured under different light intensities. PMID:28540588
A comprehensive proteogenomic study of the human Brucella vaccine strain 104 M. PMID:28535754
Differential Proteomic Analysis of Gender-dependent Hepatic Tumorigenesis in Hras12V Transgenic Mice. PMID:28512230
Large scale phosphoprotein profiling to explore Drosophila cold acclimation regulatory mechanisms. PMID:28490779
Firmiana: towards a one-stop proteomic cloud platform for data processing and analysis. PMID:28486446
Unbiased Protein Association Study on the Public Human Proteome Reveals Biological Connections between Co-Occurring Protein Pairs. PMID:28480704
Mass spectrometry data from label-free quantitative proteomic analysis of harmless and pathogenic strains of infectious microalgae, Prototheca spp. PMID:28480323
Complementary Benzophenone Cross-Linking/Mass Spectrometry Photochemistry. PMID:28430416
Reduced changes in protein compared to mRNA levels across non-proliferating tissues. PMID:28420336
Salt stress induces changes in the proteomic profile of micropropagated sugarcane shoots. PMID:28419154
The E. coli molecular phenotype under different growth conditions. PMID:28417974
Large-scale analysis of post-translational modifications in E. coli under glucose-limiting conditions. PMID:28412930
Fungal volatile compounds induce production of the secondary metabolite Sodorifen in Serratia plymuthica PRI-2C. PMID:28408760
Quantitative Proteomic Analysis of Mosquito C6/36 Cells Reveals Host Proteins Involved in Zika Virus Infection. PMID:28404849
Database-augmented Mass Spectrometry Analysis of Exosomes Identifies Claudin 3 as a Putative Prostate Cancer Biomarker. PMID:28396511
Quantitative analysis of the tomato nuclear proteome during Phytophthora capsici infection unveils regulators of immunity. PMID:28394025
Protein interaction networks at the host-microbe interface in Diaphorina citri, the insect vector of the citrus greening pathogen. PMID:28386418
Proteomic Analysis of Regulatory T Cells Reveals the Importance of Themis1 in the Control of Their Suppressive Function. PMID:28373295
Proteome Profiling of Wheat Shoots from Different Cultivars. PMID:28348574
The Wilms tumor protein Wt1 contributes to female fertility by regulating oviductal proteostasis. PMID:28334862
Effects of insulin and the glucagon-like peptide 1 receptor agonist liraglutide on the kidney proteome in db/db mice. PMID:28330952
Mapping the N-linked glycosites of rice (Oryza sativa L.) germinating embryos. PMID:28328971
Blind testing cross-linking/mass spectrometry under the auspices of the 11th critical assessment of methods of protein structure prediction (CASP11). PMID:28317030
Proteomic data on enzyme secretion and activity in the bacterium Chitinophaga pinensis. PMID:28317006
Deciphering the Acute Cellular Phosphoproteome Response to Irradiation with X-rays, Protons and Carbon Ions. PMID:28302921
Sex differences in the molecular signature of the developing mouse hippocampus. PMID:28302071
Post-transcriptional regulation of fruit ripening and disease resistance in tomato by the vacuolar protease SlVPE3. PMID:28270225
Quirks of Error Estimation in Cross-Linking/Mass Spectrometry. PMID:28267312
A temporal proteome dynamics study reveals the molecular basis of induced phenotypic resistance in Mycobacterium smegmatis at sub-lethal rifampicin concentrations. PMID:28262820
Proteomic Analysis of Post-synaptic Density Fractions from Shank3 Mutant Mice Reveals Brain Region Specific Changes Relevant to Autism Spectrum Disorder. PMID:28261056
Simple discovery of bacterial biocatalysts from environmental samples through functional metaproteomics. PMID:28253936
Phycobilisome truncation causes widespread proteome changes in Synechocystis sp. PCC 6803. PMID:28253354
Global Proteome Changes in Liver Tissue 6 Weeks after FOLFOX Treatment of Colorectal Cancer Liver Metastases. PMID:28248240
Label-free Proteomic Analysis of Exosomes Derived from Inducible Hepatitis B Virus-Replicating HepAD38 Cell Line. PMID:28242843
Semi-quantitative proteomics of mammalian cells upon short-term exposure to non-ionizing electromagnetic fields. PMID:28234898
Fatty acid synthase inhibits the O-GlcNAcase during oxidative stress. PMID:28232487
Label-Free Proteome Analysis of Plasma from Patients with Breast Cancer: Stage-Specific Protein Expression. PMID:28210565
Usp9x regulates Ets-1 ubiquitination and stability to control NRAS expression and tumorigenicity in melanoma. PMID:28198367
Global Characterization of Protein Secretion from Human Macrophages Following Non-canonical Caspase-4/5 Inflammasome Activation. PMID:28196878
Foxp3 drives oxidative phosphorylation and protection from lipotoxicity. PMID:28194435
Serine ADP-Ribosylation Depends on HPF1. PMID:28190768
Control of immune ligands by members of a cytomegalovirus gene expansion suppresses natural killer cell activation. PMID:28186488
Bicarbonate Induced Redox Proteome Changes in Arabidopsis Suspension Cells. PMID:28184230
Integrated analysis of proteome, phosphotyrosine-proteome, tyrosine-kinome, and tyrosine-phosphatome in acute myeloid leukemia. PMID:28176486
The PeptideAtlas of the Domestic Laying Hen. PMID:28166638
Uncovering stem cell differentiation factors for salivary gland regeneration by quantitative analysis of differential proteomes. PMID:28158262
Proteomic and transcriptomic study of brain microvessels in neonatal and adult mice. PMID:28141873
Building ProteomeTools based on a complete synthetic human proteome. PMID:28135259
A Novel Positron Emission Tomography (PET) Approach to Monitor Cardiac Metabolic Pathway Remodeling in Response to Sunitinib Malate. PMID:28129334
A Golden Age for Working with Public Proteomics Data. PMID:28118949
Identifying components required for OMP biogenesis as novel targets for antiinfective drugs. PMID:28118090
CD5 molecule-like and transthyretin as putative biomarkers of chronic myeloid leukemia - an insight from the proteomic analysis of human plasma. PMID:28117336
Fibronectin-guided migration of carcinoma collectives. PMID:28102238
Global open data management in metabolomics. PMID:28092796
Comprehensive proteome analysis of lysosomes reveals the diverse function of macrophages in immune responses. PMID:28088779
Interactome disassembly during apoptosis occurs independent of caspase cleavage. PMID:28082348
The Anti-Warburg Effect Elicited by the cAMP-PGC1α Pathway Drives Differentiation of Glioblastoma Cells into Astrocytes. PMID:28076790
Reduced Insulin/IGF-1 Signaling Restores the Dynamic Properties of Key Stress Granule Proteins during Aging. PMID:28076789
ATM induces MacroD2 nuclear export upon DNA damage. PMID:28069995
Integrated Cellular and Plasma Proteomics of Contrasting B-cell Cancers Reveals Common, Unique and Systemic Signatures. PMID:28062796
Proteomic characterization of microdissected breast tissue environment provides a protein-level overview of malignant transformation. PMID:28058811
A Comprehensive Proteomic Survey of ABA-Induced Protein Phosphorylation in Rice (Oryza sativa L.). PMID:28054942
Dataset of the proteome of purified outer membrane vesicles from the human pathogen Aggregatibacter actinomycetemcomintans. PMID:28050585
Integrated Metabolomics and Proteomics Highlight Altered Nicotinamide- and Polyamine Pathways in Lung Adenocarcinoma. PMID:28049629
Proteome alterations associated with transformation of multiple myeloma to secondary plasma cell leukemia. PMID:28038447
Proteome data on the microbial microbiome of grasshopper feces. PMID:27995170
Quantitative cross-linking/mass spectrometry reveals subtle protein conformational changes. PMID:27976756
Mass Spectrometry Analysis of Lysine Posttranslational Modifications of Tau Protein from Alzheimer's Disease Brain. PMID:27975250
Proteome-wide identification of lysine propionylation in thermophilic and mesophilic bacteria: Geobacillus kaustophilus, Thermus thermophilus, Escherichia coli, Bacillus subtilis, and Rhodothermus marinus. PMID:27928680
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition. PMID:27924013
Data file of a deep proteome analysis of the prefrontal cortex in aged mice with progranulin deficiency or neuronal overexpression of progranulin. PMID:27921079
Exploring experimental cerebral malaria pathogenesis through the characterisation of host-derived plasma microparticle protein content. PMID:27917875
Targeted proteomics in urinary extracellular vesicles identifies biomarkers for diagnosis and prognosis of prostate cancer. PMID:27903962
SWATH-MS dataset of heat-shock treated Drosophila melanogaster embryos. PMID:27900350
jPOSTrepo: an international standard data repository for proteomes. PMID:27899654
moFF: a robust and automated approach to extract peptide ion intensities. PMID:27898063
Follicular fluid biomarkers for human in vitro fertilization outcome: Proof of principle. PMID:27895531
The Plastoglobule-Localized Metallopeptidase PGM48 Is a Positive Regulator of Senescence in Arabidopsis thaliana. PMID:27895226
Proteomic profiling of NCI-60 extracellular vesicles uncovers common protein cargo and cancer type-specific biomarkers. PMID:27894104
Genome, transcriptome and proteome: the rise of omics data and their integration in biomedical sciences. PMID:27881428
Multi-omics Analysis of Serum Samples Demonstrates Reprogramming of Organ Functions Via Systemic Calcium Mobilization and Platelet Activation in Metastatic Melanoma. PMID:27879288
Morphological and proteomic analysis of biofilms from the Antarctic archaeon, Halorubrum lacusprofundi. PMID:27874045
Data set of Aspergillus flavus induced alterations in tear proteome: Understanding the pathogen-induced host response to fungal infection. PMID:27872886
A systems study reveals concurrent activation of AMPK and mTOR by amino acids. PMID:27869123
Direct identification of clinically relevant neoepitopes presented on native human melanoma tissue by mass spectrometry. PMID:27869121
The Physcomitrella patens Chloroplast Proteome Changes in Response to Protoplastation. PMID:27867392
Nicotine-induced protein expression profiling reveals mutually altered proteins across four human cell lines. PMID:27862958
SWATH-MS data of Drosophila melanogaster proteome dynamics during embryogenesis. PMID:27844044
Nano-liquid Chromatography-orbitrap MS-based Quantitative Proteomics Reveals Differences Between the Mechanisms of Action of Carnosic Acid and Carnosol in Colon Cancer Cells. PMID:27834734
A Role for Barley Calcium-Dependent Protein Kinase CPK2a in the Response to Drought. PMID:27826303
Asc1p/RACK1 Connects Ribosomes to Eukaryotic Phosphosignaling. PMID:27821475
RHO binding to FAM65A regulates Golgi reorientation during cell migration. PMID:27807006
Discovery of Age-Related Protein Folding Stability Differences in the Mouse Brain Proteome. PMID:27806573
Proteomic profiling of lung adenocarcinoma indicates heightened DNA repair, antioxidant mechanisms and identifies LASP1 as a potential negative predictor of survival. PMID:27799870
Mycosins Are Required for the Stabilization of the ESX-1 and ESX-5 Type VII Secretion Membrane Complexes. PMID:27795391
The Influence of Sporulation Conditions on the Spore Coat Protein Composition of Bacillus subtilis Spores. PMID:27790212
Serine/threonine phosphatases and aquaporin-2 regulation in renal collecting duct. PMID:27784696
Increased Abundance of Proteins Involved in Resistance to Oxidative and Nitrosative Stress at the Last Stages of Growth and Development of Leishmania amazonensis Promastigotes Revealed by Proteome Analysis. PMID:27776144
Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation. PMID:27775707
Novel non-canonical role of STAT1 in Natural Killer cell cytotoxicity. PMID:27757297
N-glycosylation proteome enrichment analysis in kidney reveals differences between diabetic mouse models. PMID:27757071
Thermophilic archaea activate butane via alkyl-coenzyme M formation. PMID:27749816
A proteomic atlas of the legume Medicago truncatula and its nitrogen-fixing endosymbiont Sinorhizobium meliloti. PMID:27748755
The Brain Proteome of the Ubiquitin Ligase Peli1 Knock-Out Mouse during Experimental Autoimmune Encephalomyelitis. PMID:27746629
Dinitrogenase-Driven Photobiological Hydrogen Production Combats Oxidative Stress in Cyanothece sp. Strain ATCC 51142. PMID:27742679
Immunogenic HLA-DR-Presented Self-Peptides Identified Directly from Clinical Samples of Synovial Tissue, Synovial Fluid, or Peripheral Blood in Patients with Rheumatoid Arthritis or Lyme Arthritis. PMID:27726376
Activation of the ATR kinase by the RPA-binding protein ETAA1. PMID:27723717
Oak protein profile alterations upon root colonization by an ectomycorrhizal fungus. PMID:27714470
Quantitative Profiling of Single Formalin Fixed Tumour Sections: proteomics for translational research. PMID:27713570
Multi-omics integration accurately predicts cellular state in unexplored conditions for Escherichia coli. PMID:27713404
Chronic low-dose-rate ionising radiation affects the hippocampal phosphoproteome in the ApoE-/- Alzheimer's mouse model. PMID:27708245
The Salivary Protein Repertoire of the Polyphagous Spider Mite Tetranychus urticae: A Quest for Effectors. PMID:27703040
Isobaric Tags for Relative and Absolute Quantitation (iTRAQ)-Based Comparative Proteome Analysis of the Response of Ramie under Drought Stress. PMID:27689998
Analysis of the Yeast Peptidome and Comparison with the Human Peptidome. PMID:27685651
Detection of candidate biomarkers of prostate cancer progression in serum: a depletion-free 3D LC/MS quantitative proteomics pilot study. PMID:27685442
The lncRNA landscape of breast cancer reveals a role for DSCAM-AS1 in breast cancer progression. PMID:27666543
Progressive muscle proteome changes in a clinically relevant pig model of Duchenne muscular dystrophy. PMID:27634466
FOXO/DAF-16 Activation Slows Down Turnover of the Majority of Proteins in C. elegans. PMID:27626670
Molecular Profiling of Phagocytic Immune Cells in Anopheles gambiae Reveals Integral Roles for Hemocytes in Mosquito Innate Immunity. PMID:27624304
A proteomic analysis of chondrogenic, osteogenic and tenogenic constructs from ageing mesenchymal stem cells. PMID:27624072
Dataset of differentially regulated proteins in HUVECs challenged with wild type and UGM1 mutant Aspergillus fumigatus strains. PMID:27622208
Identification and Characterization of MCM3 as a Kelch-like ECH-associated Protein 1 (KEAP1) Substrate. PMID:27621311
Physiological Response of Escherichia coli O157:H7 Sakai to Dynamic Changes in Temperature and Water Activity as Experienced during Carcass Chilling. PMID:27615263
Fluoxetine Treatment Rescues Energy Metabolism Pathway Alterations in a Posttraumatic Stress Disorder Mouse Model. PMID:27606320
Towards a Proteomic Catalogue and Differential Annotation of Salivary Gland Proteins in Blood Fed Malaria Vector Anopheles culicifacies by Mass Spectrometry. PMID:27602567
Vegemite Beer: yeast extract spreads as nutrient supplements to promote fermentation. PMID:27602264
Data sources for in vivo molecular profiling of human phenotypes. PMID:27599755
On the privacy risks of sharing clinical proteomics data. PMID:27595046
Extensive dataset of boar seminal plasma proteome displaying putative reproductive functions of identified proteins. PMID:27583342
Tma108, a putative M1 aminopeptidase, is a specific nascent chain-associated protein in Saccharomyces cerevisiae. PMID:27580715
Combinatory annotation of cell membrane receptors and signalling pathways of Bombyx mori prothoracic glands. PMID:27576083
Systems-level effects of ectopic galectin-7 reconstitution in cervical cancer and its microenvironment. PMID:27558259
Comparative Community Proteomics Demonstrates the Unexpected Importance of Actinobacterial Glycoside Hydrolase Family 12 Protein for Crystalline Cellulose Hydrolysis. PMID:27555310
The endoplasmic reticulum and casein-containing vesicles contribute to milk fat globule membrane. PMID:27535430
Homo- and Heterotypic Association Regulates Signaling by the SgK269/PEAK1 and SgK223 Pseudokinases. PMID:27531744
A Skyline Plugin for Pathway-Centric Data Browsing. PMID:27530777
Multi-omics profile of the mouse dentate gyrus after kainic acid-induced status epilepticus. PMID:27529540
Quantitative Non-canonical Amino Acid Tagging (QuaNCAT) Proteomics Identifies Distinct Patterns of Protein Synthesis Rapidly Induced by Hypertrophic Agents in Cardiomyocytes, Revealing New Aspects of Metabolic Remodeling. PMID:27512079
Proteomic dataset of Paracentrotus lividus gonads of different sexes and at different maturation stages. PMID:27508229
A tissue-specific protein purification approach in Caenorhabditis elegans identifies novel interaction partners of DLG-1/Discs large. PMID:27506200
Is Transthyretin a Regulator of Ubc9 SUMOylation? PMID:27501389
Phosphoproteome Integration Reveals Patient-Specific Networks in Prostate Cancer. PMID:27499020
FYVE1/FREE1 Interacts with the PYL4 ABA Receptor and Mediates Its Delivery to the Vacuolar Degradation Pathway. PMID:27495812
The Exposed Proteomes of Brachyspira hyodysenteriae and B. pilosicoli. PMID:27493641
Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets. PMID:27493588
The N-myristoylome of Trypanosoma cruzi. PMID:27492267
Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1. PMID:27490519
Metrics for the Human Proteome Project 2016: Progress on Identifying and Characterizing the Human Proteome, Including Post-Translational Modifications. PMID:27487407
Phosphoproteomics to Characterize Host Response During Influenza A Virus Infection of Human Macrophages. PMID:27486199
Comparative Proteome Analysis in Schizosaccharomyces pombe Identifies Metabolic Targets to Improve Protein Production and Secretion. PMID:27477394
Physiological and Proteomic Responses of Continuous Cultures of Microcystis aeruginosa PCC 7806 to Changes in Iron Bioavailability and Growth Rate. PMID:27474713
Cold acclimation is accompanied by complex responses of glycosylphosphatidylinositol (GPI)-anchored proteins in Arabidopsis. PMID:27471282
Integrative proteomic analysis reveals reprograming tumor necrosis factor signaling in epithelial mesenchymal transition. PMID:27461979
Determinants of Macromolecular Specificity from Proteomics-Derived Peptide Substrate Data. PMID:27455965
Tetramethylpyrazine Nitrone Improves Neurobehavioral Functions and Confers Neuroprotection on Rats with Traumatic Brain Injury. PMID:27452038
Structural elucidation of a novel mechanism for the bacteriophage-based inhibition of the RNA degradosome. PMID:27447594
Shotgun Proteomics of Tomato Fruits: Evaluation, Optimization and Validation of Sample Preparation Methods and Mass Spectrometric Parameters. PMID:27446192
Quantitative Proteomic and Transcriptomic Study on Autotetraploid Paulownia and Its Diploid Parent Reveal Key Metabolic Processes Associated with Paulownia Autotetraploidization. PMID:27446122
Proteomic data set of the organohalide-respiring Epsilonproteobacterium Sulfurospirillum multivorans adapted to tetrachloroethene and other energy substrates. PMID:27437436
Proteomic Analysis of Human Brown Adipose Tissue Reveals Utilization of Coupled and Uncoupled Energy Expenditure Pathways. PMID:27418403
Ten Simple Rules for Taking Advantage of Git and GitHub. PMID:27415786
Glyco-centric lectin magnetic bead array (LeMBA) - proteomics dataset of human serum samples from healthy, Barrett׳s esophagus and esophageal adenocarcinoma individuals. PMID:27408916
Assessing the impact of minimizing arginine conversion in fully defined SILAC culture medium in human embryonic stem cells. PMID:27392809
NEDDylation promotes stress granule assembly. PMID:27381497
Metabolomic and Proteomic Profiles Reveal the Dynamics of Primary Metabolism during Seed Development of Lotus (Nelumbo nucifera). PMID:27375629
Proteome data of whole saliva which are associated with development of oral mucositis in head and neck cancer patients undergoing radiotherapy. PMID:27358911
Phosphoproteomic analysis of Methanohalophilus portucalensis FDF1(T) identified the role of protein phosphorylation in methanogenesis and osmoregulation. PMID:27357474
Xanthine oxidoreductase mediates membrane docking of milk-fat droplets but is not essential for apocrine lipid secretion. PMID:27357166
Proteome analysis of the Mycobacterium tuberculosis Beijing B0/W148 cluster. PMID:27356881
Proteomic Analysis of the Rat Canalicular Membrane Reveals Expression of a Complex System of P4-ATPases in Liver. PMID:27347675
A reconstituted cell-free assay for the evaluation of the intrinsic activity of purified human ribosomes. PMID:27336708
Prion Protein Deficiency Causes Diverse Proteome Shifts in Cell Models That Escape Detection in Brain Tissue. PMID:27327609
Critical Role of COI1-Dependent Jasmonate Pathway in AAL toxin induced PCD in Tomato Revealed by Comparative Proteomics. PMID:27324416
Activation of an Endoribonuclease by Non-intein Protein Splicing. PMID:27311716
Quantitative Cross-linking/Mass Spectrometry Using Isotope-labeled Cross-linkers and MaxQuant. PMID:27302889
Identification of RNA-binding Proteins in Macrophages by Interactome Capture. PMID:27281784
Autoimmune Regulator (AIRE) Is Expressed in Spermatogenic Cells, and It Altered the Expression of Several Nucleic-Acid-Binding and Cytoskeletal Proteins in Germ Cell 1 Spermatogonial (GC1-spg) Cells. PMID:27281783
NrdR Transcription Regulation: Global Proteome Analysis and Its Role in Escherichia coli Viability and Virulence. PMID:27275780
Quantitative proteomics reveals that distant recurrence-associated protein R-Ras and Transgelin predict post-surgical survival in patients with Stage III colorectal cancer. PMID:27270312
N-Myristoyltransferase Inhibition Induces ER-Stress, Cell Cycle Arrest, and Apoptosis in Cancer Cells. PMID:27267252
Resolution of Novel Pancreatic Ductal Adenocarcinoma Subtypes by Global Phosphotyrosine Profiling. PMID:27259358
Characterization and use of HapT1-derived homologous tumors as a preclinical model to evaluate therapeutic efficacy of drugs against pancreatic tumor desmoplasia. PMID:27259232
The proteome of the infectious bronchitis virus Beau-R virion. PMID:27257648
Integrated omics approaches provide strategies for rapid erythromycin yield increase in Saccharopolyspora erythraea. PMID:27255285
Annexin A5 is the Most Abundant Membrane-Associated Protein in Stereocilia but is Dispensable for Hair-Bundle Development and Function. PMID:27251877
Structure of Complement C3(H2O) Revealed By Quantitative Cross-Linking/Mass Spectrometry And Modeling. PMID:27250206
Proteomic Analysis of the Spatio-temporal Based Molecular Kinetics of Acute Spinal Cord Injury Identifies a Time- and Segment-specific Window for Effective Tissue Repair. PMID:27250205
Proteomics Analysis with a Nano Random Forest Approach Reveals Novel Functional Interactions Regulated by SMC Complexes on Mitotic Chromosomes. PMID:27231315
Dinosaur: A Refined Open-Source Peptide MS Feature Detector. PMID:27224449
Interferon-driven alterations of the host's amino acid metabolism in the pathogenesis of typhoid fever. PMID:27217537
Enrichment of extracellular vesicles from tissues of the central nervous system by PROSPR. PMID:27216497
Commercial processed soy-based food product contains glycated and glycoxidated lunasin proteoforms. PMID:27189269
Decoding the complete arsenal for cellulose and hemicellulose deconstruction in the highly efficient cellulose decomposer Paenibacillus O199. PMID:27186238
Proteomic dataset of the sea urchin Paracentrotus lividus adhesive organs and secreted adhesive. PMID:27182547
The Clathrin-dependent Spindle Proteome. PMID:27174698
Interleukin-6 Induced "Acute" Phenotypic Microenvironment Promotes Th1 Anti-Tumor Immunity in Cryo-Thermal Therapy Revealed By Shotgun and Parallel Reaction Monitoring Proteomics. PMID:27162549
SWATH Mass Spectrometry Performance Using Extended Peptide MS/MS Assay Libraries. PMID:27161445
Interaction of tau with the RNA-Binding Protein TIA1 Regulates tau Pathophysiology and Toxicity. PMID:27160897
Proteome Profiling in Lung Injury after Hematopoietic Stem Cell Transplantation. PMID:27155584
Elucidation of tonic and activated B-cell receptor signaling in Burkitt's lymphoma provides insights into regulation of cell survival. PMID:27155012
Comparative Proteomic Analyses of Avirulent, Virulent, and Clinical Strains of Mycobacterium tuberculosis Identify Strain-specific Patterns. PMID:27151218
Differential Neuroproteomic and Systems Biology Analysis of Spinal Cord Injury. PMID:27150525
A Proteomics Approach to Identify New Putative Cardiac Intercalated Disk Proteins. PMID:27148881
Proteomic Analysis of a Poplar Cell Suspension Culture Suggests a Major Role of Protein S-Acylation in Diverse Cellular Processes. PMID:27148305
Feeding a Modified Fish Diet to Bottlenose Dolphins Leads to an Increase in Serum Adiponectin and Sphingolipids. PMID:27148164
An integrated proteomics approach shows synaptic plasticity changes in an APP/PS1 Alzheimer's mouse model. PMID:27144524
The Pathogenesis of the Demyelinating Form of Guillain-Barre Syndrome (GBS): Proteo-peptidomic and Immunological Profiling of Physiological Fluids. PMID:27143409
Analytic framework for peptidomics applied to large-scale neuropeptide identification. PMID:27142507
Integrated Transcriptome and Proteome Analyses Reveal Organ-Specific Proteome Deterioration in Old Rats. PMID:27135913
Identification of Candidate Cyclin-dependent kinase 1 (Cdk1) Substrates in Mitosis by Quantitative Phosphoproteomics. PMID:27134283
Slx5/Slx8 Promotes Replication Stress Tolerance by Facilitating Mitotic Progression. PMID:27134171
Data Independent Acquisition analysis in ProHits 4.0. PMID:27132685
Identification of syntrophic acetate-oxidizing bacteria in anaerobic digesters by combined protein-based stable isotope probing and metagenomics. PMID:27128991
Proteotranscriptomic Analysis Reveals Stage Specific Changes in the Molecular Landscape of Clear-Cell Renal Cell Carcinoma. PMID:27128972
Identification of Protease Specificity by Combining Proteome-Derived Peptide Libraries and Quantitative Proteomics. PMID:27122596
Comparative expression profiling reveals a role of the root apoplast in local phosphate response. PMID:27121119
Intestinal Microbiota and Microbial Metabolites Are Changed in a Pig Model Fed a High-Fat/Low-Fiber or a Low-Fat/High-Fiber Diet. PMID:27100182
Identification of Bovine Sperm Surface Proteins Involved in Carbohydrate-mediated Fertilization Interactions. PMID:27094474
Proteogenomic Analysis of Mycobacterium smegmatis Using High Resolution Mass Spectrometry. PMID:27092112
Formalin-Fixed, Paraffin-Embedded Tissues (FFPE) as a Robust Source for the Profiling of Native and Protease-Generated Protein Amino Termini. PMID:27087653
The Effect of Chronic Methamphetamine Exposure on the Hippocampal and Olfactory Bulb Neuroproteomes of Rats. PMID:27082425
Comprehensively Characterizing the Thioredoxin Interactome In Vivo Highlights the Central Role Played by This Ubiquitous Oxidoreductase in Redox Control. PMID:27081212
Mass spectrometry analysis of adipose-derived stem cells reveals a significant effect of hypoxia on pathways regulating extracellular matrix. PMID:27075204
ExtraPEG: A Polyethylene Glycol-Based Method for Enrichment of Extracellular Vesicles. PMID:27068479
Nuclear Phosphoproteomic Screen Uncovers ACLY as Mediator of IL-2-induced Proliferation of CD4+ T lymphocytes. PMID:27067055
N-Glycopeptide Profiling in Arabidopsis Inflorescence. PMID:27067053
Identification of Targets and Interaction Partners of Arginyl-tRNA Protein Transferase in the Moss Physcomitrella patens. PMID:27067052
Proteomic Identification of Putative MicroRNA394 Target Genes in Arabidopsis thaliana Identifies Major Latex Protein Family Members Critical for Normal Development. PMID:27067051
Comparative Proteomic Analysis Reveals Differential Root Proteins in Medicago sativa and Medicago truncatula in Response to Salt Stress. PMID:27066057
Unconventional endosome-like compartment and retromer complex in Toxoplasma gondii govern parasite integrity and host infection. PMID:27064065
Proteome rearrangements after auditory learning: high-resolution profiling of synapse-enriched protein fractions from mouse brain. PMID:27062398
Global Proteomic Analysis Reveals an Exclusive Role of Thylakoid Membranes in Bioenergetics of a Model Cyanobacterium. PMID:27056914
Proteome-wide dataset supporting functional study of tyrosine kinases in breast cancer. PMID:27054188
Intact Cell MALDI-TOF MS on Sperm: A Molecular Test For Male Fertility Diagnosis. PMID:27044871
An Arginine Deprivation Response Pathway Is Induced in Leishmania during Macrophage Invasion. PMID:27043018
Investigation of proteome changes in osteoclastogenesis in low serum culture system using quantitative proteomics. PMID:27034619
Phospho-proteomic analyses of B-Raf protein complexes reveal new regulatory principles. PMID:27034005
Quantitative phosphoproteomics of protein kinase SnRK1 regulated protein phosphorylation in Arabidopsis under submergence. PMID:27029354
Analysis of Drosophila melanogaster proteome dynamics during embryonic development by a combination of label-free proteomics approaches. PMID:27029218
Changes in Gab2 phosphorylation and interaction partners in response to interleukin (IL)-2 stimulation in T-lymphocytes. PMID:27025927
Contribution of Human Fibroblasts and Endothelial Cells to the Hallmarks of Inflammation as Determined by Proteome Profiling. PMID:27025457
Quantitative proteomics links metabolic pathways to specific developmental stages of the plant-pathogenic oomycete Phytophthora capsici. PMID:27019332
Comparison of proteomic datasets from hypertrophic chondrocytes in response to ER stress. PMID:27014728
Allicin Induces Thiol Stress in Bacteria through S-Allylmercapto Modification of Protein Cysteines. PMID:27008862
Comparison of the Proteome of Adult and Cord Erythroid Cells, and Changes in the Proteome Following Reticulocyte Maturation. PMID:27006477
MaxReport: An Enhanced Proteomic Result Reporting Tool for MaxQuant. PMID:27003708
Proteomic Profiling of Mouse Liver following Acute Toxoplasma gondii Infection. PMID:27003162
Urine Proteome Biomarkers in Kidney Diseases. I. Limits, Perspectives, and First Focus on Normal Urine. PMID:26997865
Longitudinal quantification of the gingival crevicular fluid proteome during progression from gingivitis to periodontitis in a canine model. PMID:26990150
Transcriptomic and Proteomic Analysis of Arion vulgaris--Proteins for Probably Successful Survival Strategies? PMID:26986963
Gender differences in white matter pathology and mitochondrial dysfunction in Alzheimer's disease with cerebrovascular disease. PMID:26983404
A large dataset of protein dynamics in the mammalian heart proteome. PMID:26977904
Validation, optimisation, and application data in support of the development of a targeted selected ion monitoring assay for degraded cardiac troponin T. PMID:26977445
Axin cancer mutants form nanoaggregates to rewire the Wnt signaling network. PMID:26974125
Unique Insights in the Cervicovaginal Lactobacillus iners and L. crispatus Proteomes and Their Associations with Microbiota Dysbiosis. PMID:26963809
Phosphorylation of plastoglobular proteins in Arabidopsis thaliana. PMID:26962209
Data in support of the identification of neuronal and astrocyte proteins interacting with extracellularly applied oligomeric and fibrillar α-synuclein assemblies by mass spectrometry. PMID:26958642
Two overlapping two-component systems in Xanthomonas oryzae pv. oryzae contribute to full fitness in rice by regulating virulence factors expression. PMID:26957113
Characterization of various cell lines from different ampullary cancer subtypes and cancer associated fibroblast-mediated responses. PMID:26951071
Data for the identification of proteins and post-translational modifications of proteins associated to histones H3 and H4 in S. cerevisiae, using tandem affinity purification coupled with mass spectrometry. PMID:26949727
Data in support of proteomic analysis of pneumococcal pediatric clinical isolates to construct a protein array. PMID:26949725
A single dose of the γ-secretase inhibitor semagacestat alters the cerebrospinal fluid peptidome in humans. PMID:26948580
Proteomics study reveals that the dysregulation of focal adhesion and ribosome contribute to early pregnancy loss. PMID:26947931
Natural Genetic Variation Differentially Affects the Proteome and Transcriptome in Caenorhabditis elegans. PMID:26944343
Proteomics of Urinary Vesicles Links Plakins and Complement to Polycystic Kidney Disease. PMID:26940098
Cleaning out the Litterbox of Proteomic Scientists' Favorite Pet: Optimized Data Analysis Avoiding Trypsin Artifacts. PMID:26938934
Proteome stability analysis of snap frozen, RNAlater preserved, and formalin-fixed paraffin-embedded human colon mucosal biopsies. PMID:26937473
Proteome identification of the silkworm middle silk gland. PMID:26937469
Characterization of a SILAC method for proteomic analysis of primary rat microglia. PMID:26936193
Macrophage activation and polarization modify P2X7 receptor secretome influencing the inflammatory process. PMID:26935289
Adjuvant-induced Human Monocyte Secretome Profiles Reveal Adjuvant- and Age-specific Protein Signatures. PMID:26933193
An Inducible Retroviral Expression System for Tandem Affinity Purification Mass-Spectrometry-Based Proteomics Identifies Mixed Lineage Kinase Domain-like Protein (MLKL) as an Heat Shock Protein 90 (HSP90) Client. PMID:26933192
Comparing isogenic strains of Beijing genotype Mycobacterium tuberculosis after acquisition of Isoniazid resistance: A proteomics approach. PMID:26929115
Integrative subcellular proteomic analysis allows accurate prediction of human disease-causing genes. PMID:26912414
Supporting data for the MS identification of distinct transferrin glycopeptide glycoforms and citrullinated peptides associated with inflammation or autoimmunity. PMID:26909372
Data detailing the platelet acetyl-lysine proteome. PMID:26904711
Tissue-specific Proteogenomic Analysis of Plutella xylostella Larval Midgut Using a Multialgorithm Pipeline. PMID:26902207
Chemoproteomic profiling of host and pathogen enzymes active in cholera. PMID:26900865
Sexual crossing of thermophilic fungus Myceliophthora heterothallica improved enzymatic degradation of sugar beet pulp. PMID:26900400
The UniProtKB guide to the human proteome. PMID:26896845
Dementia-linked amyloidosis is associated with brain protein deamidation as revealed by proteomic profiling of human brain tissues. PMID:26892330
Quantitative Proteomics Analysis Reveals the Min System of Escherichia coli Modulates Reversible Protein Association with the Inner Membrane. PMID:26889046
Global Protein Oxidation Profiling Suggests Efficient Mitochondrial Proteome Homeostasis During Aging. PMID:26884511
Illuminating structural proteins in viral "dark matter" with metaproteomics. PMID:26884177
Major remodeling of brain microvessels during neonatal period in the mouse: A proteomic and transcriptomic study. PMID:26873886
Quantitative Proteomics of the Infectious and Replicative Forms of Chlamydia trachomatis. PMID:26871455
Identification of Cell Cycle Dependent Interaction Partners of the Septins by Quantitative Mass Spectrometry. PMID:26871441
Integrated Translatomics with Proteomics to Identify Novel Iron-Transporting Proteins in Streptococcus pneumoniae. PMID:26870030
Leaf apoplastic proteome composition in UV-B treated Arabidopsis thaliana mutants impaired in extracellular glutathione degradation. PMID:26862584
Data set from a comprehensive phosphoproteomic analysis of rice variety IRBB5 in response to bacterial blight. PMID:26862573
Time-course investigation of Phytophthora infestans infection of potato leaf from three cultivars by quantitative proteomics. PMID:26862565
Understanding the Heat Shock Response in the Sea Cucumber Apostichopus japonicus, Using iTRAQ-Based Proteomics. PMID:26861288
Systematic Survey of Serine Hydrolase Activity in Mycobacterium tuberculosis Defines Changes Associated with Persistence. PMID:26853625
Reassessing ecdysteroidogenic cells from the cell membrane receptors' perspective. PMID:26847502
Comparative Phosphoproteomics Analysis of VEGF and Angiopoietin-1 Signaling Reveals ZO-1 as a Critical Regulator of Endothelial Cell Proliferation. PMID:26846344
PCH1 integrates circadian and light-signaling pathways to control photoperiod-responsive growth in Arabidopsis. PMID:26839287
Proteome Dynamics: Tissue Variation in the Kinetics of Proteostasis in Intact Animals. PMID:26839000
Phosphoproteomics reveals that Parkinson's disease kinase LRRK2 regulates a subset of Rab GTPases. PMID:26824392
Methylthioadenosine (MTA) Regulates Liver Cells Proteome and Methylproteome: Implications in Liver Biology and Disease. PMID:26819315
Simultaneous Metabolite, Protein, Lipid Extraction (SIMPLEX): A Combinatorial Multimolecular Omics Approach for Systems Biology. PMID:26814187
Proteomic Analysis of Rhizoctonia solani Identifies Infection-specific, Redox Associated Proteins and Insight into Adaptation to Different Plant Hosts. PMID:26811357
Mps1 Mediated Phosphorylation of Hsp90 Confers Renal Cell Carcinoma Sensitivity and Selectivity to Hsp90 Inhibitors. PMID:26804907
Exosomes Secreted by Apoptosis-Resistant Acute Myeloid Leukemia (AML) Blasts Harbor Regulatory Network Proteins Potentially Involved in Antagonism of Apoptosis. PMID:26801919
Developmental alcohol exposure leads to a persistent change on astrocyte secretome. PMID:26801685
The Pluripotency Factor NANOG Binds to GLI Proteins and Represses Hedgehog-mediated Transcription. PMID:26797124
Data in support of proteome analysis of gynophores and early swelling pods of peanut (Arachis hypogaea L.). PMID:26793750
Milk Bottom-Up Proteomics: Method Optimization. PMID:26793233
Phosphoproteomics Profiling of Tobacco Mature Pollen and Pollen Activated in vitro. PMID:26792808
Quantitative phosphoproteomics reveals genistein as a modulator of cell cycle and DNA damage response pathways in triple-negative breast cancer cells. PMID:26783066
Life span extension by targeting a link between metabolism and histone acetylation in Drosophila. PMID:26781291
Attenuation of pattern recognition receptor signaling is mediated by a MAP kinase kinase kinase. PMID:26769563
Proteomic Analysis of Epithelial to Mesenchymal Transition (EMT) Reveals Cross-talk between SNAIL and HDAC1 Proteins in Breast Cancer Cells. PMID:26764010
Analysis of the Protein Kinase A-Regulated Proteome of Cryptococcus neoformans Identifies a Role for the Ubiquitin-Proteasome Pathway in Capsule Formation. PMID:26758180
Systematic evaluation of data-independent acquisition for sensitive and reproducible proteomics-a prototype design for a single injection assay. PMID:26757066
A draft map of the mouse pluripotent stem cell spatial proteome. PMID:26754106
FIH Regulates Cellular Metabolism through Hydroxylation of the Deubiquitinase OTUB1. PMID:26752685
Ixodes scapularis Tick Saliva Proteins Sequentially Secreted Every 24 h during Blood Feeding. PMID:26751078
Quantitative Profiling of the Activity of Protein Lysine Methyltransferase SMYD2 Using SILAC-Based Proteomics. PMID:26750096
Quantitative proteomic analysis of Shigella flexneri and Shigella sonnei Generalized Modules for Membrane Antigens (GMMA) reveals highly pure preparations. PMID:26746581
Quantitative Phosphoproteomics Analysis of ERBB3/ERBB4 Signaling. PMID:26745281
Implementation of meiosis prophase I programme requires a conserved retinoid-independent stabilizer of meiotic transcripts. PMID:26742488
DCAF1 controls T-cell function via p53-dependent and -independent mechanisms. PMID:26728942
Protein turnover during in vitro tissue engineering. PMID:26724458
Glycoproteomic Approach Identifies KRAS as a Positive Regulator of CREG1 in Non-small Cell Lung Cancer Cells. PMID:26722374
Influenza Polymerase Can Adopt an Alternative Configuration Involving a Radical Repacking of PB2 Domains. PMID:26711008
Dog Tear Film Proteome In-Depth Analysis. PMID:26701646
Reactive Oxygen Species (ROS)-Activated ATM-Dependent Phosphorylation of Cytoplasmic Substrates Identified by Large-Scale Phosphoproteomics Screen. PMID:26699800
Large Scale Mass Spectrometry-based Identifications of Enzyme-mediated Protein Methylation Are Subject to High False Discovery Rates. PMID:26699799
The Pig PeptideAtlas: A resource for systems biology in animal production and biomedicine. PMID:26699206
Haem-activated promiscuous targeting of artemisinin in Plasmodium falciparum. PMID:26694030
Genomic and Proteomic Studies on the Mode of Action of Oxaboroles against the African Trypanosome. PMID:26684831
The spliceosome-associated protein Nrl1 suppresses homologous recombination-dependent R-loop formation in fission yeast. PMID:26682798
Germline variant FGFR4 p.G388R exposes a membrane-proximal STAT3 binding site. PMID:26675719
A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. PMID:26673895
Integrative Network Analysis Combined with Quantitative Phosphoproteomics Reveals Transforming Growth Factor-beta Receptor type-2 (TGFBR2) as a Novel Regulator of Glioblastoma Stem Cell Properties. PMID:26670566
Common errors in mass spectrometry-based analysis of post-translational modifications. PMID:26667783
Improvement of genome assembly completeness and identification of novel full-length protein-coding genes by RNA-seq in the giant panda genome. PMID:26658305
Integrated analysis of global proteome, phosphoproteome, and glycoproteome enables complementary interpretation of disease-related protein networks. PMID:26657352
Lowering Endogenous Cathepsin D Abundance Results in Reactive Oxygen Species Accumulation and Cell Senescence. PMID:26657266
The Proteomic Profile of Deleted in Breast Cancer 1 (DBC1) Interactions Points to a Multifaceted Regulation of Gene Expression. PMID:26657080
Discovery of a nucleocytoplasmic O-mannose glycoproteome in yeast. PMID:26644575
Proteome Profiling of the Rhodobacter capsulatus Molybdenum Response Reveals a Role of IscN in Nitrogen Fixation by Fe-Nitrogenase. PMID:26644433
Repairing oxidized proteins in the bacterial envelope using respiratory chain electrons. PMID:26641313
The Activation-Induced Assembly of an RNA/Protein Interactome Centered on the Splicing Factor U2AF2 Regulates Gene Expression in Human CD4 T Cells. PMID:26641092
Proteomic Analysis Reveals Key Proteins and Phosphoproteins upon Seed Germination of Wheat (Triticum aestivum L.). PMID:26635843
Secretome identification of immune cell factors mediating metastatic cell homing. PMID:26634905
Isolation, N-glycosylations and Function of a Hyaluronidase-Like Enzyme from the Venom of the Spider Cupiennius salei. PMID:26630650
Data standards can boost metabolomics research, and if there is a will, there is a way. PMID:26612985
An 8-Month Systems Toxicology Inhalation/Cessation Study in Apoe-/- Mice to Investigate Cardiovascular and Respiratory Exposure Effects of a Candidate Modified Risk Tobacco Product, THS 2.2, Compared With Conventional Cigarettes. PMID:26609137
Global Profiling of Huntingtin-associated protein E (HYPE)-Mediated AMPylation through a Chemical Proteomic Approach. PMID:26604261
Investigation of Yersinia pestis Laboratory Adaptation through a Combined Genomics and Proteomics Approach. PMID:26599979
Osteoblast-released Matrix Vesicles, Regulation of Activity and Composition by Sulfated and Non-sulfated Glycosaminoglycans. PMID:26598647
Conserved mRNA-binding proteomes in eukaryotic organisms. PMID:26595419
Calsequestrins in skeletal and cardiac muscle from adult Danio rerio. PMID:26585961
Metabolic Interplay between the Asian Citrus Psyllid and Its Profftella Symbiont: An Achilles' Heel of the Citrus Greening Insect Vector. PMID:26580079
Changes in the nuclear proteome of developing wheat (Triticum aestivum L.) grain. PMID:26579155
CD36 Is a Matrix Metalloproteinase-9 Substrate That Stimulates Neutrophil Apoptosis and Removal During Cardiac Remodeling. PMID:26578544
Five omic technologies are concordant in differentiating the biochemical characteristics of the berries of five grapevine (Vitis vinifera L.) cultivars. PMID:26573226
Deconstruction of O-glycosylation--GalNAc-T isoforms direct distinct subsets of the O-glycoproteome. PMID:26566661
Cross-linking immunoprecipitation-MS (xIP-MS): Topological Analysis of Chromatin-associated Protein Complexes Using Single Affinity Purification. PMID:26560067
Yeast Interspecies Comparative Proteomics Reveals Divergence in Expression Profiles and Provides Insights into Proteome Resource Allocation and Evolutionary Roles of Gene Duplication. PMID:26560065
Immunocapture strategies in translational proteomics. PMID:26558424
miR-17-92 fine-tunes MYC expression and function to ensure optimal B cell lymphoma growth. PMID:26555894
On the Relationship of Protein and mRNA Dynamics in Vertebrate Embryonic Development. PMID:26555057
Global Analysis of mRNA, Translation, and Protein Localization: Local Translation Is a Key Regulator of Cell Protrusions. PMID:26555054
Cdc42-dependent actin dynamics controls maturation and secretory activity of dendritic cells. PMID:26553928
Micro-proteomics with iterative data analysis: Proteome analysis in C. elegans at the single worm level. PMID:26552604
Global Reprogramming of Host SUMOylation during Influenza Virus Infection. PMID:26549460
Testing and Validation of Computational Methods for Mass Spectrometry. PMID:26549429
Novel N-terminal and Lysine Methyltransferases That Target Translation Elongation Factor 1A in Yeast and Human. PMID:26545399
PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets. PMID:26545397
Characterization of the porcine synovial fluid proteome and a comparison to the plasma proteome. PMID:26543887
A Pilot Proteogenomic Study with Data Integration Identifies MCT1 and GLUT1 as Prognostic Markers in Lung Adenocarcinoma. PMID:26539827
Myc coordinates transcription and translation to enhance transformation and suppress invasiveness. PMID:26538417
Comprehensive Cross-Linking Mass Spectrometry Reveals Parallel Orientation and Flexible Conformations of Plant HOP2-MND1. PMID:26535604
Identification of Epstein-Barr Virus Replication Proteins in Burkitt's Lymphoma Cells. PMID:26529022
Beyond plant defense: insights on the potential of salicylic and methylsalicylic acid to contain growth of the phytopathogen Botrytis cinerea. PMID:26528317
2016 update of the PRIDE database and its related tools. PMID:26527722
Integration of Ixodes ricinus genome sequencing with transcriptome and proteome annotation of the naïve midgut. PMID:26510422
Proteomic profiling of nuclear fractions from native renal inner medullary collecting duct cells. PMID:26508704
Sperm competition risk drives plasticity in seminal fluid composition. PMID:26507392
Multiplexed, Proteome-Wide Protein Expression Profiling: Yeast Deubiquitylating Enzyme Knockout Strains. PMID:26503604
Myeloma cells can corrupt senescent mesenchymal stromal cells and impair their anti-tumor activity. PMID:26498687
Effects of low temperature on tropical and temperate isolates of marine Synechococcus. PMID:26495993
Proteomics Analysis of Dorsal Striatum Reveals Changes in Synaptosomal Proteins following Methamphetamine Self-Administration in Rats. PMID:26484527
Rosuvastatin Alters the Proteome of High Density Lipoproteins: Generation of alpha-1-antitrypsin Enriched Particles with Anti-inflammatory Properties. PMID:26483418
Tissue matrix arrays for high-throughput screening and systems analysis of cell function. PMID:26480475
Matrix Metalloproteinase 10 Degradomics in Keratinocytes and Epidermal Tissue Identifies Bioactive Substrates With Pleiotropic Functions. PMID:26475864
In-Depth, Label-Free Analysis of the Erythrocyte Cytoplasmic Proteome in Diamond Blackfan Anemia Identifies a Unique Inflammatory Signature. PMID:26474164
Characterization and quantification of proteins secreted by single human embryos prior to implantation. PMID:26471863
Pathology Tissue-quantitative Mass Spectrometry Analysis to Profile Histone Post-translational Modification Patterns in Patient Samples. PMID:26463340
Quantitative phosphoproteomics reveals new roles for the protein phosphatase PP6 in mitotic cells. PMID:26462736
Evidence of Highly Conserved β-Crystallin Disulfidome that Can be Mimicked by In Vitro Oxidation in Age-related Human Cataract and Glutathione Depleted Mouse Lens. PMID:26453637
Secretome profiling of Cryptococcus neoformans reveals regulation of a subset of virulence-associated proteins and potential biomarkers by protein kinase A. PMID:26453029
Exploring the potential of public proteomics data. PMID:26449181
Tumor-selective proteotoxicity of verteporfin inhibits colon cancer progression independently of YAP1. PMID:26443705
Global analysis of lysine acetylation in strawberry leaves. PMID:26442052
Uncovering Hidden Layers of Cell Cycle Regulation through Integrative Multi-omic Analysis. PMID:26439921
A Survey of the Impact of Deyolking on Biological Processes Covered by Shotgun Proteomic Analyses of Zebrafish Embryos. PMID:26439676
Genetically and Phenotypically Distinct Pseudomonas aeruginosa Cystic Fibrosis Isolates Share a Core Proteomic Signature. PMID:26431321
Discovery and Validation of Predictive Biomarkers of Survival for Non-small Cell Lung Cancer Patients Undergoing Radical Radiotherapy: Two Proteins With Predictive Value. PMID:26425690
Hypoxia Strongly Affects Mitochondrial Ribosomal Proteins and Translocases, as Shown by Quantitative Proteomics of HeLa Cells. PMID:26421188
Discovery of a Unique Clp Component, ClpF, in Chloroplasts: A Proposed Binary ClpF-ClpS1 Adaptor Complex Functions in Substrate Recognition and Delivery. PMID:26419670
Extracellular vesicles are rapidly purified from human plasma by PRotein Organic Solvent PRecipitation (PROSPR). PMID:26419333
Matrix metalloproteinase-9-dependent mechanisms of reduced contractility and increased stiffness in the aging heart. PMID:26415707
Positive Mode LC-MS/MS Analysis of Chondroitin Sulfate Modified Glycopeptides Derived from Light and Heavy Chains of The Human Inter-α-Trypsin Inhibitor Complex. PMID:26407992
Serum Glycoprotein Biomarker Discovery and Qualification Pipeline Reveals Novel Diagnostic Biomarker Candidates for Esophageal Adenocarcinoma. PMID:26404905
Proteome-wide quantitative multiplexed profiling of protein expression: carbon-source dependency in Saccharomyces cerevisiae. PMID:26399295
A peptide identification-free, genome sequence-independent shotgun proteomics workflow for strain-level bacterial differentiation. PMID:26395646
Proteomic Analyses for the Global S-Nitrosylated Proteins in the Brain Tissues of Different Human Prion Diseases. PMID:26392294
Serum Albumin Domain Structures in Human Blood Serum by Mass Spectrometry and Computational Biology. PMID:26385339
Proteomics of Aggregatibacter actinomycetemcomitans Outer Membrane Vesicles. PMID:26381655
Identification of B6T173 (ZmPrx35) as the prevailing peroxidase in highly insect-resistant maize (Zea mays, p84C3) kernels by activity-directed purification. PMID:26379694
Redefining the Breast Cancer Exosome Proteome by Tandem Mass Tag Quantitative Proteomics and Multivariate Cluster Analysis. PMID:26378940
The Arabidopsis Chloroplast Stromal N-Terminome: Complexities of Amino-Terminal Protein Maturation and Stability. PMID:26371235
Post-transcriptional Mechanisms Contribute Little to Phenotypic Variation in Snake Venoms. PMID:26358130
Phosphorylation of the Scc2 cohesin deposition complex subunit regulates chromosome condensation through cohesin integrity. PMID:26354421
NADH-Cytochrome b5 Reductase 3 Promotes Colonization and Metastasis Formation and Is a Prognostic Marker of Disease-Free and Overall Survival in Estrogen Receptor-Negative Breast Cancer. PMID:26351264
Identification of potential drug targets for tuberous sclerosis complex by synthetic screens combining CRISPR-based knockouts with RNAi. PMID:26350902
Cervicovaginal microbiome dysbiosis is associated with proteome changes related to alterations of the cervicovaginal mucosal barrier. PMID:26349657
Delivery of Alginate Scaffold Releasing Two Trophic Factors for Spinal Cord Injury Repair. PMID:26348665
Mixed effects of suberoylanilide hydroxamic acid (SAHA) on the host transcriptome and proteome and their implications for HIV reactivation from latency. PMID:26343910
Proteomic Analysis of One-carbon Metabolism-related Marker in Liver of Rat Offspring. PMID:26342040
Comparative "-omics" in Mycoplasma pneumoniae Clinical Isolates Reveals Key Virulence Factors. PMID:26335586
Molecular Consequences of Proprotein Convertase 1/3 (PC1/3) Inhibition in Macrophages for Application to Cancer Immunotherapy: A Proteomic Study. PMID:26330543
Qualitative ubiquitome unveils the potential significances of protein lysine ubiquitination in hyphal growth of Aspergillus nidulans. PMID:26328806
The Proteome of Native Adult Müller Glial Cells From Murine Retina. PMID:26324419
α-synuclein assemblies sequester neuronal α3-Na+/K+-ATPase and impair Na+ gradient. PMID:26323479
Data from proteomic characterization of the role of Snail1 in murine mesenchymal stem cells and 3T3-L1 fibroblasts differentiation. PMID:26322327
2-DE proteomics analysis of drought treated seedlings of Quercus ilex supports a root active strategy for metabolic adaptation in response to water shortage. PMID:26322068
Interacting Network of the Gap Junction (GJ) Protein Connexin43 (Cx43) is Modulated by Ischemia and Reperfusion in the Heart. PMID:26316108
Spatial differentiation of gene expression in Aspergillus niger colony grown for sugar beet pulp utilization. PMID:26314379
Machine Learning-based Classification of Diffuse Large B-cell Lymphoma Patients by Their Protein Expression Profiles. PMID:26311899
Mass spectrometry identification of age-associated proteins from the malaria mosquitoes Anopheles gambiae s.s. and Anopheles stephensi. PMID:26306320
Data set for the proteomic inventory and quantitative analysis of chicken eggshell matrix proteins during the primary events of eggshell mineralization and the active growth phase of calcification. PMID:26306314
Comparative analysis of cerebrospinal fluid from the meningo-encephalitic stage of T. b. gambiense and rhodesiense sleeping sickness patients using TMT quantitative proteomics. PMID:26306311
Proteomic Evidence for Components of Spider Silk Synthesis from Black Widow Silk Glands and Fibers. PMID:26302244
Proteomic and metabolic traits of grape exocarp to explain different anthocyanin concentrations of the cultivars. PMID:26300900
The Prion Protein Controls Polysialylation of Neural Cell Adhesion Molecule 1 during Cellular Morphogenesis. PMID:26288071
Label-free quantitative phosphoproteomics with novel pairwise abundance normalization reveals synergistic RAS and CIP2A signaling. PMID:26278961
Controlled Measurement and Comparative Analysis of Cellular Components in E. coli Reveals Broad Regulatory Changes in Response to Glucose Starvation. PMID:26275208
Proteomic Profiling of Detergent Resistant Membranes (Lipid Rafts) of Prostasomes. PMID:26272980
The Human Tau Interactome: Binding to the Ribonucleoproteome, and Impaired Binding of the Proline-to-Leucine Mutant at Position 301 (P301L) to Chaperones and the Proteasome. PMID:26269332
ISG15 counteracts Listeria monocytogenes infection. PMID:26259872
Lysine acetyltransfer supports platelet function. PMID:26256950
Integrated Proteomic and Glycoproteomic Analyses of Prostate Cancer Cells Reveal Glycoprotein Alteration in Protein Abundance and Glycosylation. PMID:26256267
Post-Transcriptional Coordination of the Arabidopsis Iron Deficiency Response is Partially Dependent on the E3 Ligases RING DOMAIN LIGASE1 (RGLG1) and RING DOMAIN LIGASE2 (RGLG2). PMID:26253232
Environmental Interactions and Epistasis Are Revealed in the Proteomic Responses to Complex Stimuli. PMID:26247773
Separating myoblast differentiation from muscle cell fusion using IGF-I and the p38 MAP kinase inhibitor SB202190. PMID:26246429
Mistargeted mitochondrial proteins activate a proteostatic response in the cytosol. PMID:26245374
A Systems Level Analysis of Vasopressin-mediated Signaling Networks in Kidney Distal Convoluted Tubule Cells. PMID:26239621
Proteomics analysis reveals differentially activated pathways that operate in peanut gynophores at different developmental stages. PMID:26239120
Type 1 Diabetes Prone NOD Mice Have Diminished Cxcr1 mRNA Expression in Polymorphonuclear Neutrophils and CD4+ T Lymphocytes. PMID:26230114
Proteomic Analysis Reveals Distinct Metabolic Differences Between Granulocyte-Macrophage Colony Stimulating Factor (GM-CSF) and Macrophage Colony Stimulating Factor (M-CSF) Grown Macrophages Derived from Murine Bone Marrow Cells. PMID:26229149
A peptide resource for the analysis of Staphylococcus aureus in host-pathogen interaction studies. PMID:26224020
MStern Blotting-High Throughput Polyvinylidene Fluoride (PVDF) Membrane-Based Proteomic Sample Preparation for 96-Well Plates. PMID:26223766
Myristoylation profiling in human cells and zebrafish. PMID:26217820
Redox proteomic analysis of the gastrocnemius muscle from adult and old mice. PMID:26217813
Quantitative proteome changes in Arabidopsis thaliana suspension-cultured cells in response to plant natriuretic peptides. PMID:26217812
Quantitative proteomics of rat and human pancreatic beta cells. PMID:26217750
Characterization of the gila monster (Heloderma suspectum suspectum) venom proteome. PMID:26217734
Data set for the mass spectrometry based exoproteome analysis of Aspergillus flavus isolates. PMID:26217704
Data set for the proteomic inventory and quantitative analysis of chicken uterine fluid during eggshell biomineralization. PMID:26217689
A biphasic epigenetic switch controls immunoevasion, virulence and niche adaptation in non-typeable Haemophilus influenzae. PMID:26215614
Mining Missing Membrane Proteins by High-pH Reverse-Phase StageTip Fractionation and Multiple Reaction Monitoring Mass Spectrometry. PMID:26202522
Characterization of Regenerative Phenotype of Unrestricted Somatic Stem Cells (USSC) from Human Umbilical Cord Blood (hUCB) by Functional Secretome Analysis. PMID:26183719
p53-Regulated Networks of Protein, mRNA, miRNA, and lncRNA Expression Revealed by Integrated Pulsed Stable Isotope Labeling With Amino Acids in Cell Culture (pSILAC) and Next Generation Sequencing (NGS) Analyses. PMID:26183718
A Pneumococcal Protein Array as a Platform to Discover Serodiagnostic Antigens Against Infection. PMID:26183717
Regulation of microtubule dynamics by DIAPH3 influences amoeboid tumor cell mechanics and sensitivity to taxanes. PMID:26179371
Time- and compartment-resolved proteome profiling of the extracellular niche in lung injury and repair. PMID:26174933
The Goblet Cell Protein Clca1 (Alias mClca3 or Gob-5) Is Not Required for Intestinal Mucus Synthesis, Structure and Barrier Function in Naive or DSS-Challenged Mice. PMID:26162072
Metrics for the Human Proteome Project 2015: Progress on the Human Proteome and Guidelines for High-Confidence Protein Identification. PMID:26155816
Proteomic profile response of Paracoccidioides lutzii to the antifungal argentilactone. PMID:26150808
Quantification of HER2 by Targeted Mass Spectrometry in Formalin-Fixed Paraffin-Embedded (FFPE) Breast Cancer Tissues. PMID:26149442
Proteomic analysis of integrin-associated complexes from mesenchymal stem cells. PMID:26147903
Label-free Quantitative Proteomics of Mouse Cerebrospinal Fluid Detects β-Site APP Cleaving Enzyme (BACE1) Protease Substrates In Vivo. PMID:26139848
State of the Human Proteome in 2014/2015 As Viewed through PeptideAtlas: Enhancing Accuracy and Coverage through the AtlasProphet. PMID:26139527
Cytological and proteomic analyses of horsetail (Equisetum arvense L.) spore germination. PMID:26136760
iTRAQ-Based Quantitative Proteomic Analysis of the Initiation of Head Regeneration in Planarians. PMID:26131905
Stone-dwelling actinobacteria Blastococcus saxobsidens, Modestobacter marinus and Geodermatophilus obscurus proteogenomes. PMID:26125681
Assessment of a method to characterize antibody selectivity and specificity for use in immunoprecipitation. PMID:26121405
Serum- and Glucocorticoid-Inducible Kinase-1 (SGK-1) Plays a Role in Membrane Trafficking in Caenorhabditis elegans. PMID:26115433
A comprehensive quantitative phosphoproteome analysis of rice in response to bacterial blight. PMID:26112675
Honey Bee Infecting Lake Sinai Viruses. PMID:26110586
Fasting, but Not Aging, Dramatically Alters the Redox Status of Cysteine Residues on Proteins in Drosophila melanogaster. PMID:26095360
New Insight into Microbial Iron Oxidation as Revealed by the Proteomic Profile of an Obligate Iron-Oxidizing Chemolithoautotroph. PMID:26092463
Characterization of the Tyrosine Kinase-Regulated Proteome in Breast Cancer by Combined use of RNA interference (RNAi) and Stable Isotope Labeling with Amino Acids in Cell Culture (SILAC) Quantitative Proteomics. PMID:26089344
Proteomic Identification of Cysteine Cathepsin Substrates Shed from the Surface of Cancer Cells. PMID:26081835
System-wide identification of wild-type SUMO-2 conjugation sites. PMID:26073453
Systems-wide analysis of BCR signalosomes and downstream phosphorylation and ubiquitylation. PMID:26038114
The mzqLibrary--An open source Java library supporting the HUPO-PSI quantitative proteomics standard. PMID:26037908
Proteomic analysis of cellular soluble proteins from human bronchial smooth muscle cells by combining nondenaturing micro 2DE and quantitative LC-MS/MS. 2. Similarity search between protein maps for the analysis of protein complexes. PMID:26031785
Phosphoproteomic Analysis of Cell-Based Resistance to BRAF Inhibitor Therapy in Melanoma. PMID:26029660
Identifying the ionically bound cell wall and intracellular glycoside hydrolases in late growth stage Arabidopsis stems: implications for the genetic engineering of bioenergy crops. PMID:26029221
From raw data to biological discoveries: a computational analysis pipeline for mass spectrometry-based proteomics. PMID:26002791
Neutrophil Extracellular Traps in Ulcerative Colitis: A Proteome Analysis of Intestinal Biopsies. PMID:25993694
A Combined Omics Approach to Generate the Surface Atlas of Human Naive CD4+ T Cells during Early T-Cell Receptor Activation. PMID:25991687
Differential protein expression profiles of cyst fluid from papillary thyroid carcinoma and benign thyroid lesions. PMID:25978681
A repository of assays to quantify 10,000 human proteins by SWATH-MS. PMID:25977788
The 4E-BP Caf20p Mediates Both eIF4E-Dependent and Independent Repression of Translation. PMID:25973932
Proteomic study of different culture medium serum volume fractions on RANKL-dependent RAW264.7 cells differentiating into osteoclasts. PMID:25969670
Cell Surface Proteomics Provides Insight into Stage-Specific Remodeling of the Host-Parasite Interface in Trypanosoma brucei. PMID:25963835
Protein and Peptide Composition of Male Accessory Glands of Apis mellifera Drones Investigated by Mass Spectrometry. PMID:25955586
Current strategies and findings in clinically relevant post-translational modification-specific proteomics. PMID:25955281
Proteomic analysis of cellular soluble proteins from human bronchial smooth muscle cells by combining nondenaturing micro 2DE and quantitative LC-MS/MS. 1. Preparation of more than 4000 native protein maps. PMID:25931155
Label-free quantitative analysis of the casein kinase 2-responsive phosphoproteome of the marine minimal model species Ostreococcus tauri. PMID:25930153
iTRAQ-based quantitative subcellular proteomic analysis of Avibirnavirus-infected cells. PMID:25929241
Effect of Embryo Vitrification on Rabbit Foetal Placenta Proteome during Pregnancy. PMID:25915775
An improved protocol to study the plant cell wall proteome. PMID:25914713
ms-data-core-api: an open-source, metadata-oriented library for computational proteomics. PMID:25910694
The genomes of two key bumblebee species with primitive eusocial organization. PMID:25908251
Introducing the PRIDE Archive RESTful web services. PMID:25904633
Combined Proteomics and Transcriptomics Identifies Carboxypeptidase B1 and Nuclear Factor κB (NF-κB) Associated Proteins as Putative Biomarkers of Metastasis in Low Grade Breast Cancer. PMID:25903579
A Double-Barrel Liquid Chromatography-Tandem Mass Spectrometry (LC-MS/MS) System to Quantify 96 Interactomes per Day. PMID:25887394
Proteomics of methyl jasmonate induced defense response in maize leaves against Asian corn borer. PMID:25885025
Improved protease digestion conditions for membrane protein detection. PMID:25884272
Representation of selected-reaction monitoring data in the mzQuantML data standard. PMID:25884107
The central nervous system transcriptome of the weakly electric brown ghost knifefish (Apteronotus leptorhynchus): de novo assembly, annotation, and proteomics validation. PMID:25879418
Faustovirus, an asfarvirus-related new lineage of giant viruses infecting amoebae. PMID:25878099
A protein deep sequencing evaluation of metastatic melanoma tissues. PMID:25874936
Quantitative Proteomics of Human Fibroblasts with I1061T Mutation in Niemann-Pick C1 (NPC1) Protein Provides Insights into the Disease Pathogenesis. PMID:25873482
A large-scale proteogenomics study of apicomplexan pathogens-Toxoplasma gondii and Neospora caninum. PMID:25867681
Comparative proteome analysis of multi-layer cocoon of the silkworm, Bombyx mori. PMID:25860555
Multidimensional proteomics for cell biology. PMID:25857810
A Phosphoproteomic Comparison of B-RAFV600E and MKK1/2 Inhibitors in Melanoma Cells. PMID:25850435
Online Peptide fractionation using a multiphasic microfluidic liquid chromatography chip improves reproducibility and detection limits for quantitation in discovery and targeted proteomics. PMID:25850434
Growth Cone Localization of the mRNA Encoding the Chromatin Regulator HMGN5 Modulates Neurite Outgrowth. PMID:25825524
Multifunctional reagents for quantitative proteome-wide analysis of protein modification in human cells and dynamic profiling of protein lipidation during vertebrate development. PMID:25807930
No evidence of enemy release in pathogen and microbial communities of common wasps (Vespula vulgaris) in their native and introduced range. PMID:25798856
Mo-CBP3, an antifungal chitin-binding protein from Moringa oleifera seeds, is a member of the 2S albumin family. PMID:25789746
Identification of a biomarker in cerebrospinal fluid for neuronopathic forms of Gaucher disease. PMID:25775479
Phosphate Limitation Induces Drastic Physiological Changes, Virulence-Related Gene Expression, and Secondary Metabolite Production in Pseudovibrio sp. Strain FO-BEG1. PMID:25769826
Modulation of cell metabolic pathways and oxidative stress signaling contribute to acquired melphalan resistance in multiple myeloma cells. PMID:25769101
Feasibility of protein turnover studies in prototroph Saccharomyces cerevisiae strains. PMID:25767917
A search for protein biomarkers links olfactory signal transduction to social immunity. PMID:25757461
Histone Deacetylase Inhibitors (HDACi) Cause the Selective Depletion of Bromodomain Containing Proteins (BCPs). PMID:25755299
Large-Scale Targeted Proteomics Using Internal Standard Triggered-Parallel Reaction Monitoring (IS-PRM). PMID:25755295
Acetylation site specificities of lysine deacetylase inhibitors in human cells. PMID:25751058
Analysis of the Candida albicans Phosphoproteome. PMID:25750214
Quantitative proteomics analysis of the Arg/N-end rule pathway of targeted degradation in Arabidopsis roots. PMID:25728785
Development of data representation standards by the human proteome organization proteomics standards initiative. PMID:25726569
Proteomic analysis of the soybean symbiosome identifies new symbiotic proteins. PMID:25724908
SUMOylation and PARylation cooperate to recruit and stabilize SLX4 at DNA damage sites. PMID:25722289
Quantitative phosphoproteomics reveals pathways for coordination of cell growth and division by the conserved fission yeast kinase pom1. PMID:25720772
Proteomic identification of early salicylate- and flg22-responsive redox-sensitive proteins in Arabidopsis. PMID:25720653
DYn-2 Based Identification of Arabidopsis Sulfenomes. PMID:25693797
Visualization of proteomics data using R and bioconductor. PMID:25690415
Proteomic analyses uncover a new function and mode of action for mouse homolog of Diaphanous 2 (mDia2). PMID:25682332
Quantitative proteomic analysis reveals a simple strategy of global resource allocation in bacteria. PMID:25678603
Defining the phospho-adhesome through the phosphoproteomic analysis of integrin signalling. PMID:25677187
Building high-quality assay libraries for targeted analysis of SWATH MS data. PMID:25675208
A metaproteomics approach to elucidate host and pathogen protein expression during catheter-associated urinary tract infections (CAUTIs). PMID:25673765
The functional interactome of PYHIN immune regulators reveals IFIX is a sensor of viral DNA. PMID:25665578
Sample preparation for phosphoproteomic analysis of circadian time series in Arabidopsis thaliana. PMID:25662467
Quantification of extracellular matrix proteins from a rat lung scaffold to provide a molecular readout for tissue engineering. PMID:25660013
Identification of synaptosomal proteins binding to monomeric and oligomeric α-synuclein. PMID:25659148
Version 4.0 of PaxDb: Protein abundance data, integrated across model organisms, tissues, and cell-lines. PMID:25656970
Integrating transcriptomics and proteomics to show that tanshinone IIA suppresses cell growth by blocking glucose metabolism in gastric cancer cells. PMID:25652794
Quantitative variability of 342 plasma proteins in a human twin population. PMID:25652787
FOXP1 potentiates Wnt/β-catenin signaling in diffuse large B cell lymphoma. PMID:25650440
Total proteome analysis identifies migration defects as a major pathogenetic factor in immunoglobulin heavy chain variable region (IGHV)-unmutated chronic lymphocytic leukemia. PMID:25645933
Quantitative proteomic analysis of Burkholderia pseudomallei Bsa type III secretion system effectors using hypersecreting mutants. PMID:25635268
Trans-Proteomic Pipeline, a standardized data processing pipeline for large-scale reproducible proteomics informatics. PMID:25631240
BDNF stimulation of protein synthesis in cortical neurons requires the MAP kinase-interacting kinase MNK1. PMID:25609615
Identification of protein complexes that bind to histone H3 combinatorial modifications using super-SILAC and weighted correlation network analysis. PMID:25605797
DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics. PMID:25599550
Cytoplasmic TAF2-TAF8-TAF10 complex provides evidence for nuclear holo-TFIID assembly from preformed submodules. PMID:25586196
PeptideShaker enables reanalysis of MS-derived proteomics data sets. PMID:25574629
Rb and FZR1/Cdh1 determine CDK4/6-cyclin D requirement in C. elegans and human cancer cells. PMID:25562820
Deciphering preferential interactions within supramolecular protein complexes: the proteasome case. PMID:25561571
An enhanced in vivo stable isotope labeling by amino acids in cell culture (SILAC) model for quantification of drug metabolism enzymes. PMID:25561501
Proteomics analysis of rough endoplasmic reticulum in pancreatic beta cells. PMID:25546123
A public repository for mass spectrometry imaging data. PMID:25542566
A THEMIS:SHP1 complex promotes T-cell survival. PMID:25535246
Yeast PP4 interacts with ATR homolog Ddc2-Mec1 and regulates checkpoint signaling. PMID:25533186
Proteomics of muscle chronological ageing in post-menopausal women. PMID:25532418
Microtubule-dependent modulation of adhesion complex composition. PMID:25526367
Sirtuin 4 is a lipoamidase regulating pyruvate dehydrogenase complex activity. PMID:25525879
The composition of the gut microbiota shapes the colon mucus barrier. PMID:25525071
Spaceflight induces specific alterations in the proteomes of Arabidopsis. PMID:25517942
A comparative multidimensional LC-MS proteomic analysis reveals mechanisms for furan aldehyde detoxification in Thermoanaerobacter pseudethanolicus 39E. PMID:25506391
Plant natriuretic peptides induce proteins diagnostic for an adaptive response to stress. PMID:25505478
A proteomic analysis reveals that Snail regulates the expression of the nuclear orphan receptor Nuclear Receptor Subfamily 2 Group F Member 6 (Nr2f6) and interleukin 17 (IL-17) to inhibit adipocyte differentiation. PMID:25505127
An Insight into the proteome of Crithidia fasciculata choanomastigotes as a comparative approach to axenic growth, peanut lectin agglutination and differentiation of Leishmania spp. promastigotes. PMID:25503511
Phosphoproteomic analyses reveal novel cross-modulation mechanisms between two signaling pathways in yeast. PMID:25492886
CRISPR-Cas9-based knockout of the prion protein and its effect on the proteome. PMID:25490046
Computational phosphoproteomics: from identification to localization. PMID:25475148
Tomato nuclear proteome reveals the involvement of specific E2 ubiquitin-conjugating enzymes in fruit ripening. PMID:25464976
Preprocessing significantly improves the peptide/protein identification sensitivity of high-resolution isobarically labeled tandem mass spectrometry data. PMID:25435543
The UCSC Genome Browser database: 2015 update. PMID:25428374
Comparative phosphoproteomic analysis of mammalian glomeruli reveals conserved podocin C-terminal phosphorylation as a determinant of slit diaphragm complex architecture. PMID:25420462
Identification of rare alternative splicing events in MS/MS data reveals a significant fraction of alternative translation initiation sites. PMID:25405079
A previously uncharacterized, nonphotosynthetic member of the Chromatiaceae is the primary CO2-fixing constituent in a self-regenerating biocathode. PMID:25398855
Hepatic proteome analysis of Atlantic salmon (Salmo salar) after exposure to environmental concentrations of human pharmaceuticals. PMID:25394398
PIP4kγ is a substrate for mTORC1 that maintains basal mTORC1 signaling during starvation. PMID:25372051
Sustained mitogen-activated protein kinase activation reprograms defense metabolism and phosphoprotein profile in Arabidopsis thaliana. PMID:25368622
Quantitative phosphoproteomic analysis of IL-33-mediated signaling. PMID:25367039
Accurate protein complex retrieval by affinity enrichment mass spectrometry (AE-MS) rather than affinity purification mass spectrometry (AP-MS). PMID:25363814
Proteogenomics: concepts, applications and computational strategies. PMID:25357241
Proteomics of skin proteins in psoriasis: from discovery and verification in a mouse model to confirmation in humans. PMID:25351201
Identifying novel biomarkers through data mining-a realistic scenario? PMID:25347964
Rsp5/Nedd4 is the main ubiquitin ligase that targets cytosolic misfolded proteins following heat stress. PMID:25344756
Exploring the human plasma proteome for humoral mediators of remote ischemic preconditioning--a word of caution. PMID:25333471
Substrate trapping proteomics reveals targets of the βTrCP2/FBXW11 ubiquitin ligase. PMID:25332235
The Hsp90-dependent proteome is conserved and enriched for hub proteins with high levels of protein-protein connectivity. PMID:25316598
Refined phosphopeptide enrichment by phosphate additive and the analysis of human brain phosphoproteome. PMID:25307156
The peptide microarray "ChloroPhos1.0" identifies new phosphorylation targets of plastid casein kinase II (pCKII) in Arabidopsis thaliana. PMID:25295873
Proteomic profiles in acute respiratory distress syndrome differentiates survivors from non-survivors. PMID:25290099
Utilising proteomic approaches to understand oncogenic human herpesviruses (Review). PMID:25279171
Analysis of differential expression patterns of mRNA and protein during cold-acclimation and de-acclimation in Arabidopsis. PMID:25277243
Transcriptome-wide characterization of the eIF4A signature highlights plasticity in translation regulation. PMID:25273840
Label-free LC-MSe in tissue and serum reveals protein networks underlying differences between benign and malignant serous ovarian tumors. PMID:25265318
Species identification of archaeological skin objects from Danish bogs: comparison between mass spectrometry-based peptide sequencing and microscopy-based methods. PMID:25260035
SNW1 enables sister chromatid cohesion by mediating the splicing of sororin and APC2 pre-mRNAs. PMID:25257309
A transcriptional regulator Sll0794 regulates tolerance to biofuel ethanol in photosynthetic Synechocystis sp. PCC 6803. PMID:25239498
Identification of long-lived proteins retained in cells undergoing repeated asymmetric divisions. PMID:25228775
Uncovering global SUMOylation signaling networks in a site-specific manner. PMID:25218447
Differential cysteine labeling and global label-free proteomics reveals an altered metabolic state in skeletal muscle aging. PMID:25181601
A pipeline for determining protein-protein interactions and proximities in the cellular milieu. PMID:25172955
A normative study of the synovial fluid proteome from healthy porcine knee joints. PMID:25160569
Making proteomics data accessible and reusable: current state of proteomics databases and repositories. PMID:25158685
Systematic evaluation of quantotypic peptides for targeted analysis of the human kinome. PMID:25152083
A highly efficient tumor-infiltrating MDSC differentiation system for discovery of anti-neoplastic targets, which circumvents the need for tumor establishment in mice. PMID:25151659
Comparative proteome analysis reveals conserved and specific adaptation patterns of Staphylococcus aureus after internalization by different types of human non-professional phagocytic host cells. PMID:25136337
Proteomic analysis of the Plasmodium male gamete reveals the key role for glycolysis in flagellar motility. PMID:25124718
Label-free protein quantification for plant Golgi protein localization and abundance. PMID:25122472
The bromodomain of Gcn5 regulates site specificity of lysine acetylation on histone H3. PMID:25106422
A PWWP domain-containing protein targets the NuA3 acetyltransferase complex via histone H3 lysine 36 trimethylation to coordinate transcriptional elongation at coding regions. PMID:25104842
Environmental enrichment alters protein expression as well as the proteomic response to cocaine in rat nucleus accumbens. PMID:25100957
Proteomic analysis of human vitreous humor. PMID:25097467
Sumoylation controls host anti-bacterial response to the gut invasive pathogen Shigella flexneri. PMID:25097252
Proteomic analysis of the human cyclin-dependent kinase family reveals a novel CDK5 complex involved in cell growth and migration. PMID:25096995
A standardized framing for reporting protein identifications in mzIdentML 1.2. PMID:25092112
The LKB1-salt-inducible kinase pathway functions as a key gluconeogenic suppressor in the liver. PMID:25088745
Identification of candidate substrates for the Golgi Tul1 E3 ligase using quantitative diGly proteomics in yeast. PMID:25078903
Quantitative proteomic analysis reveals posttranslational responses to aneuploidy in yeast. PMID:25073701
Hippocampal extracellular matrix levels and stochasticity in synaptic protein expression increase with age and are associated with age-dependent cognitive decline. PMID:25044018
Colonization state influences the hemocyte proteome in a beneficial squid-Vibrio symbiosis. PMID:25038065
Quantitative proteomic analysis reveals metabolic alterations, calcium dysregulation, and increased expression of extracellular matrix proteins in laminin α2 chain-deficient muscle. PMID:24994560
The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience. PMID:24980485
Deep proteomics of the Xenopus laevis egg using an mRNA-derived reference database. PMID:24954049
Genome-wide identification and functional analysis of Apobec-1-mediated C-to-U RNA editing in mouse small intestine and liver. PMID:24946870
Using PeptideAtlas, SRMAtlas, and PASSEL: Comprehensive Resources for Discovery and Targeted Proteomics. PMID:24939129
Interactions of proteins with biogenic iron oxyhydroxides and a new culturing technique to increase biomass yields of neutrophilic, iron-oxidizing bacteria. PMID:24910632
Mass-spectrometry-based draft of the human proteome. PMID:24870543
Proteomic identification of monoclonal antibodies from serum. PMID:24684310
State of the human proteome in 2013 as viewed through PeptideAtlas: comparing the kidney, urine, and plasma proteomes for the biology- and disease-driven Human Proteome Project. PMID:24261998
How to submit MS proteomics data to ProteomeXchange via the PRIDE database PubMed citations: 22.

22 articles citing: How to submit MS proteomics data to ProteomeXchange via the PRIDE database

Sucrose nonfermenting-1-related protein kinase 1 regulates sheath-to-panicle transport of nonstructural carbohydrates during rice grain filling. PMID:35294032
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences. PMID:34723319
STAT3 contributes to cisplatin resistance, modulating EMT markers, and the mTOR signaling in lung adenocarcinoma. PMID:34543857
Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases. PMID:33589928
Mitochondrial peptide BRAWNIN is essential for vertebrate respiratory complex III assembly. PMID:32161263
Toward a Consensus on Applying Quantitative Liquid Chromatography-Tandem Mass Spectrometry Proteomics in Translational Pharmacology Research: A White Paper. PMID:31175671
Proteometabolomics of Melphalan Resistance in Multiple Myeloma. PMID:31127562
Genomes of trombidid mites reveal novel predicted allergens and laterally transferred genes associated with secondary metabolism. PMID:30445460
The PRIDE database and related tools and resources in 2019: improving support for quantification data. PMID:30395289
The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics. PMID:28515314
Comprehensive proteomic characterization of stem cell-derived extracellular matrices. PMID:28327460
A Golden Age for Working with Public Proteomics Data. PMID:28118949
Detection of Missing Proteins Using the PRIDE Database as a Source of Mass Spectrometry Evidence. PMID:27581094
Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets. PMID:27493588
Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1. PMID:27490519
Current state of the art for enhancing urine biomarker discovery. PMID:27232439
Stage-specific Proteomes from Onchocerca ochengi, Sister Species of the Human River Blindness Parasite, Uncover Adaptations to a Nodular Lifestyle. PMID:27226403
2016 update of the PRIDE database and its related tools. PMID:26527722
Introducing the PRIDE Archive RESTful web services. PMID:25904633
Shared resources, shared costs--leveraging biocuration resources. PMID:25776020
A public repository for mass spectrometry imaging data. PMID:25542566
Making proteomics data accessible and reusable: current state of proteomics databases and repositories. PMID:25158685

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metasource: Fairsharing.org
version: FAIRsharing.org: PRIDE XML Format; PRIDE XML Format; DOI: https://doi.org/10.25504/FAIRsharing.975659; Last edited: Feb. 6, 2020, 1:21 p.m.; Last accessed: Jan 03 2022 7:10 p.m.

protein expression profiling
metasource: Fairsharing.org
version: FAIRsharing.org: PRIDE XML Format; PRIDE XML Format; DOI: https://doi.org/10.25504/FAIRsharing.975659; Last edited: Feb. 6, 2020, 1:21 p.m.; Last accessed: Jan 03 2022 7:10 p.m.

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