Protein Affinity Reagent eXtensible Markup Language
Names
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Protein Affinity Reagent eXtensible Markup Language
metasource: Fairsharing.org
version: FAIRsharing.org: PSI-PAR XML; Protein Affinity Reagent eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.h9g5pe; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
PSI-PAR XML
metasource: Fairsharing.org
version: FAIRsharing.org: PSI-PAR XML; Protein Affinity Reagent eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.h9g5pe; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Names
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Protein Affinity Reagent eXtensible Markup Language
metasource: Fairsharing.orgversion: FAIRsharing.org: PSI-PAR XML; Protein Affinity Reagent eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.h9g5pe; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
PSI-PAR XML
metasource: Fairsharing.orgversion: FAIRsharing.org: PSI-PAR XML; Protein Affinity Reagent eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.h9g5pe; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Names
More detailed information about this field from each metasource.
Protein Affinity Reagent eXtensible Markup Language
metasource: Fairsharing.orgversion: FAIRsharing.org: PSI-PAR XML; Protein Affinity Reagent eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.h9g5pe; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
PSI-PAR XML
metasource: Fairsharing.orgversion: FAIRsharing.org: PSI-PAR XML; Protein Affinity Reagent eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.h9g5pe; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
The work on PSI-PAR was initiated as part of the ProteomeBinders project and carried out by EMBL-EBI and the PSI-MI work group. The Proteomics Standards Initiative (PSI) aims to define community standards for data representation in proteomics to facilitate data comparison, exchange and verification. For detailed information on all PSI activities, please see PSI Home Page. The PSI-PAR format is a standardized means of representing protein affinity reagent data and is designed to facilitate the exchange of information between different databases and/or LIMS systems. PSI-PAR is not a proposed database structure. The PSI-PAR format consists of the PSI-MI XML2.5 schema (originally designed for molecular interactions) and the PSI-PAR controlled vocabulary. In addition, PSI-PAR documentation and examples are available on this web page. The scope of PSI-PAR is PAR and target protein production and characterization.
Description
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The work on PSI-PAR was initiated as part of the ProteomeBinders project and carried out by EMBL-EBI and the PSI-MI work group. The Proteomics Standards Initiative (PSI) aims to define community standards for data representation in proteomics to facilitate data comparison, exchange and verification. For detailed information on all PSI activities, please see PSI Home Page. The PSI-PAR format is a standardized means of representing protein affinity reagent data and is designed to facilitate the exchange of information between different databases and/or LIMS systems. PSI-PAR is not a proposed database structure. The PSI-PAR format consists of the PSI-MI XML2.5 schema (originally designed for molecular interactions) and the PSI-PAR controlled vocabulary. In addition, PSI-PAR documentation and examples are available on this web page. The scope of PSI-PAR is PAR and target protein production and characterization.
metasource: Fairsharing.orgversion: FAIRsharing.org: PSI-PAR XML; Protein Affinity Reagent eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.h9g5pe; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Webpage:
http://www.psidev.info/index.php?q=node/281Webpage
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http://www.psidev.info/index.php?q=node/281
metasource: Fairsharing.orgversion: FAIRsharing.org: PSI-PAR XML; Protein Affinity Reagent eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.h9g5pe; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
A community standard format for the representation of protein affinity reagents
PMID: 19674966
metasource: Fairsharing.org
version: FAIRsharing.org: PSI-PAR XML; Protein Affinity Reagent eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.h9g5pe; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications
More detailed information about this field from each metasource.
A community standard format for the representation of protein affinity reagents
PMID: 19674966
metasource: Fairsharing.org
version: FAIRsharing.org: PSI-PAR XML; Protein Affinity Reagent eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.h9g5pe; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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A community standard format for the representation of protein affinity reagents
PubMed citations: 21.
21 articles citing: A community standard format for the representation of protein affinity reagents
Antibody validation for Western blot: By the user, for the user. PMID:31819006
Antibody validation: a view from the mountains. PMID:30086383
Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions. PMID:29642841
How to avoid pitfalls in antibody use. PMID:26834988
The European antibody network's practical guide to finding and validating suitable antibodies for research. PMID:26418356
A High Through-put Platform for Recombinant Antibodies to Folded Proteins. PMID:26290498
Bioanalytical chemistry of cytokines--a review. PMID:25467452
Analytical validation considerations of multiplex mass-spectrometry-based proteomic platforms for measuring protein biomarkers. PMID:25171765
Proteogenomic convergence for understanding cancer pathways and networks. PMID:24994965
Particle display: a quantitative screening method for generating high-affinity aptamers. PMID:24644057
Proteomics quality and standard: from a regulatory perspective. PMID:24316359
Controlled vocabularies and ontologies in proteomics: overview, principles and practice. PMID:23429179
Interlaboratory studies and initiatives developing standards for proteomics. PMID:23319436
Parallel immunizations of rabbits using the same antigen yield antibodies with similar, but not identical, epitopes. PMID:23284606
High-resolution mapping of linear antibody epitopes using ultrahigh-density peptide microarrays. PMID:22984286
The mzIdentML data standard for mass spectrometry-based proteomics results. PMID:22375074
Generation of monospecific antibodies based on affinity capture of polyclonal antibodies. PMID:21898641
Toponostics of invasive ductal breast carcinoma: combination of spatial protein expression imaging and quantitative proteome signature analysis. PMID:21738817
Mapping protein interactions by combining antibody affinity maturation and mass spectrometry. PMID:21704603
The path to clinical proteomics research: integration of proteomics, genomics, clinical laboratory and regulatory science. PMID:21474978
Minimum information about a protein affinity reagent (MIAPAR). PMID:20622827
Tags:
Tags
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affinity
metasource: Fairsharing.org
version: FAIRsharing.org: PSI-PAR XML; Protein Affinity Reagent eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.h9g5pe; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: PSI-PAR XML; Protein Affinity Reagent eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.h9g5pe; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
reagent
metasource: Fairsharing.org
version: FAIRsharing.org: PSI-PAR XML; Protein Affinity Reagent eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.h9g5pe; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Tags
More detailed information about this field from each metasource.
affinity
metasource: Fairsharing.orgversion: FAIRsharing.org: PSI-PAR XML; Protein Affinity Reagent eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.h9g5pe; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: PSI-PAR XML; Protein Affinity Reagent eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.h9g5pe; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
reagent
metasource: Fairsharing.orgversion: FAIRsharing.org: PSI-PAR XML; Protein Affinity Reagent eXtensible Markup Language; DOI: https://doi.org/10.25504/FAIRsharing.h9g5pe; Last edited: Jan. 8, 2019, 1:27 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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