RNAct
Protein–RNA interaction predictions for model organisms with supporting experimental data, enabling a global view of the protein–RNA interactome. RNAct currently covers the human, mouse and yeast genomes and contains a total of 5.87 billion pairwise interactions, reflecting nearly 120 years of computation time on the CRG's high-performance computing cluster. It combines experimentally identified interactions (e.g. from ENCODE) with ab initio predictions, enabling full coverage of the RNA-binding proteome.
Description
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Protein–RNA interaction predictions for model organisms with supporting experimental data, enabling a global view of the protein–RNA interactome. RNAct currently covers the human, mouse and yeast genomes and contains a total of 5.87 billion pairwise interactions, reflecting nearly 120 years of computation time on the CRG's high-performance computing cluster. It combines experimentally identified interactions (e.g. from ENCODE) with ab initio predictions, enabling full coverage of the RNA-binding proteome.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:01.781473
Webpage:
https://rnact.crg.euWebpage
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Licence:
Name: CC-BY-NC-SA-4.0Licence name
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Publications:
Publications
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RNAct: Protein-RNA interaction predictions for model organisms with supporting experimental data
PMID: 30445601
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:01.781473
Publications
More detailed information about this field from each metasource.
RNAct: Protein-RNA interaction predictions for model organisms with supporting experimental data
PMID: 30445601
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:01.781473
-
RNAct: Protein-RNA interaction predictions for model organisms with supporting experimental data
PubMed citations: 16.
16 articles citing: RNAct: Protein-RNA interaction predictions for model organisms with supporting experimental data
Identification of long non-coding RNAs and RNA binding proteins in breast cancer subtypes. PMID:35027621
New lessons on TDP-43 from old N. furzeri killifish. PMID:34939315
Identification of Key Deregulated RNA-Binding Proteins in Pancreatic Cancer by Meta-Analysis and Prediction of Their Role as Modulators of Oncogenesis. PMID:34912796
Roles of Emerging RNA-Binding Activity of cGAS in Innate Antiviral Response. PMID:34899698
Sequence complementarity between human noncoding RNAs and SARS-CoV-2 genes: What are the implications for human health? PMID:34662705
Identification of Autophagy- and Ferroptosis-Related lncRNAs Functioned through Immune-Related Pathways in Head and Neck Squamous Carcinoma. PMID:34440579
catRAPID omics v2.0: going deeper and wider in the prediction of protein-RNA interactions. PMID:34086933
Design and Functional Validation of a Mutant Variant of the LncRNA HOTAIR to Counteract Snail Function in Epithelial-to-Mesenchymal Transition. PMID:33158813
Structural analysis of SARS-CoV-2 genome and predictions of the human interactome. PMID:33068416
Long Non-coding RNA PEBP1P2 Suppresses Proliferative VSMCs Phenotypic Switching and Proliferation in Atherosclerosis. PMID:32916601
Long non-coding RNA-polycomb intimate rendezvous. PMID:32898472
Zooming in on protein-RNA interactions: a multi-level workflow to identify interaction partners. PMID:32820806
HOTAIRM1 regulates neuronal differentiation by modulating NEUROGENIN 2 and the downstream neurogenic cascade. PMID:32661334
Bioinformatics analysis of prognosis-related long non-coding RNAs in invasive breast carcinoma. PMID:32565939
RNAInter in 2020: RNA interactome repository with increased coverage and annotation. PMID:31906603
RNA structure drives interaction with proteins. PMID:31324771
Tags:
Tags
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molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:01.781473
protein interactions
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:01.781473
rna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:01.781473
Tags
More detailed information about this field from each metasource.
molecular interactions, pathways and networks
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:01.781473
protein interactions
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:01.781473
rna
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:01.781473
molecular interactions, pathways and networks protein interaction rna
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