Human RNA-RNA and RNA-protein interactions
rna sequence
RBP-Var is a database of functional variants involved in regulation mediated by RNA-binding proteins. Human genome variants can change the RNA structure and affect RNA-protein interactions.
RNA Localization in the cell
Cellinker is a platform of ligand-receptor interactions for intercellular communication analysis.
Coding and non-coding RNA
Naturally modified nucleosides in RNA
Increasing evidence reveals that diverse non-coding RNAs (ncRNAs) play critically important roles in viral infection [1-3]. Viruses can use diverse ncRNAs to manipulate both cellular and viral gene ex ...
A database of 3D RNA fragments within known RNA structures
The Comparative RNA Web (CRW) Site disseminates information about RNA structure and evolution that has been determined using comparative sequence analysis. We present both raw (sequences, structure mo ...
5S ribosomal RNA is an integral component of the large subunit of all cytoplasmic and most organellar ribosomes. Its small size and association with ribosomal as well as non-ribosomal proteins made it ...
Database to integrate epitranscriptome sequencing data for exploring post-transcriptionally modifications of RNAs, as well as their relationships with microRNA binding events, disease-related SNPs and ...
Predicted human protein-protein interactions
CoDNaS-RNA is a database of the Conformational Diversity in the Native State of RNA molecules. Each entry in CoDNaS-RNA is a redundant collection of known structures of the same RNA molecule, which ca ...
RNAcentral is a free, public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of databases representing a broa ...
Database of RNA Editing
RNA structural modules and their interactions
The Rfam database is a collection of RNA families, each represented by multiple sequence alignments, consensus secondary structures and covariance models (CMs). The families in Rfam break down into th ...
The RNA Modification Database contains information pertaining to naturally occurring RNA modifications. The database employs an easy-to-use, searchable interface for obtaining detailed data on the 109 ...
Structures, iNterfaces and Alignments for Protein-Protein Interactions
Group I Intron Sequence and Structure Database
A Rigorously Annotated Database of A-to-I RNA editing