RNA FRABASE

Description

More detailed information about this field from each metasource.

A database of 3D RNA fragments within known RNA structures

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

InterRNA

Base interactions in RNA structures

RNA Bricks

RNA structural modules and their interactions

Vir-Mir db

Prediction of viral microRNA candidate hairpins

RNA SSTRAND

RNA SSTRAND contains known secondary structures of any type and organism. The ultimate goal of this database is to incorporate a comprehensive collection of known secondary structures, and to provide ...

5S Ribosomal RNA Database

5S ribosomal RNA is an integral component of the large subunit of all cytoplasmic and most organellar ribosomes. Its small size and association with ribosomal as well as non-ribosomal proteins made it ...

SMMRNA

Small molecule inhibitors of RNA

ncRNAs database

The noncoding RNAs database is a colection of currently available sequence data on RNAs, which do not have protein-coding capacity and have been implicated in regulation of cellular processes. The RNA ...

RNA Characterization of Secondary Structure Motifs

RNA Characterization of Secondary Structure Motifs (RNA CoSSMos) database allows the systematic searching of all catalogued three-dimensional nucleic acid PDB structures that contain secondary structu ...

ITS2

Predicted structures of internal transcribed spacer 2 (ITS2)

RNAJunction: A Database of RNA Junction and Kissing loop Structure

Within this database you will to able to find more than 12,000 extracted three-dimensional junction and kissing loop structures as well as detailed annotations for each.

Voronoia4RNA

Packing of RNA molecules and complexes

RAID

Human RNA-RNA and RNA-protein interactions

The RNA Modification Database (RNAMDB)

The RNA Modification Database contains information pertaining to naturally occurring RNA modifications. The database employs an easy-to-use, searchable interface for obtaining detailed data on the 109 ...

NNDB

Nearest Neighbor parameters for predicting RNA folding

RNAsolo

A repository of cleaned PDB-derived RNA 3D structures.

RNAloops

A database of RNA multiloops.

RNA Modification Database

Naturally modified nucleosides in RNA

Nucleic Acids Database

The Nucleic Acids Database contains information about experimentally-determined nucleic acids and complex assemblies. NDB can be used to perform searches based on annotations relating to sequence, str ...

Nucleic Acid Phylogenetic Profile

NAPP (Nucleic Acids Phylogenetic Profile) enables users to retrieve RNA-rich clusters from any genome in a list of 1000+ sequenced bacterial genomes. RNA-rich clusters can be viewed separately or, alt ...

Greglist

G-quadruplex motifs and potentially G-quadruplex regulated genes

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