Tag: nucleic acid structure

Found 22 sources

Source	Match	ReputationScore*
Nucleic Acids Database The Nucleic Acids Database contains information about experimentally-determined nucleic acids and complex assemblies. NDB can be used to perform searches based on annotations relating to sequence, structure and function, and to download, analyze, and ...		100%
ITS2 Predicted structures of internal transcribed spacer 2 (ITS2)		83%
MetalPDB MetalPDB is a resource aimed at conveying the information available on the three-dimensional structures of metal-binding biological macromolecules in a consistent and effective manner. This is achieved through the systematic and automated representat ...		80%
MINAS - A Database of Metal Ions in Nucleic AcidS MINAS contains the exact geometric information on the first and second-shell coordinating ligands of every metal ion present in nucleic acid structures that are deposited in the PDB and NDB. Containing also the sequence information of the binding poc ...		80%
NNDB Nearest Neighbor parameters for predicting RNA folding		80%
RNA Characterization of Secondary Structure Motifs RNA Characterization of Secondary Structure Motifs (RNA CoSSMos) database allows the systematic searching of all catalogued three-dimensional nucleic acid PDB structures that contain secondary structure motifs such as mismatches, (a)symmetric interna ...		76%
RNAJunction: A Database of RNA Junction and Kissing loop Structure Within this database you will to able to find more than 12,000 extracted three-dimensional junction and kissing loop structures as well as detailed annotations for each.		73%
non-B DB non-B DNA forming motifs in mammalian genomes		69%
3DNALandscapes Conformational features of DNA		63%
Big Data Nucleic Acid Simulations Database Atomistic Molecular Dynamics Simulation Trajectories and Analyses of Nucleic Acid Structures. BIGNASim is a complete platform to hold and analyse nucleic acids simulation data, based on two noSQL database engines: Cassandra to hold trajectory data an ...		58%
SMMRNA Small molecule inhibitors of RNA		50%
InterRNA Base interactions in RNA structures		50%
RNA Bricks RNA structural modules and their interactions		50%
Voronoia4RNA Packing of RNA molecules and complexes		50%
RNA FRABASE A database of 3D RNA fragments within known RNA structures		50%
Greglist G-quadruplex motifs and potentially G-quadruplex regulated genes		50%
Vir-Mir db Prediction of viral microRNA candidate hairpins		50%
RNA SSTRAND RNA SSTRAND contains known secondary structures of any type and organism. The ultimate goal of this database is to incorporate a comprehensive collection of known secondary structures, and to provide the scientific community with simple yet powerful ...		50%
GRSDB GRSDB: Ã¢â‚¬ËœGÃ¢â‚¬â„¢-Rich Sequences DataBase contains information on composition and distribution of putative Quadruplex forming 'G'-Rich Sequences (QGRS) in the alternatively processed (alternatively spliced or alternatively polyadenylated) mamma ...		50%
PseudoBase++ PseudoBase is a database containing structural, functional and sequence data related to RNA pseudoknots. It can be reached by its central page at http://pseudobaseplusplus.utep.edu. From here one can retrieve pseudoknot data as well as submit data fo ...		50%
SARS-CoV RNA SSS SARS-CoV RNA SSS DATABASE is a database of the predicted RNA secondary structural sequences of six SARS coronavirus complete genomes which were sequenced and submitted to GenBank by the separate sequencing and research groups from countries and areas ...		50%
NCIR - Non-Canonical Interactions in RNA The known occurrences of non-canonical base-base interactions in RNA are tabulated in the NCIR (http://prion.bchs.uh.edu/bp_type/) database. Currently, there are over 1700 entries including those from the crystal and NMR structures of RNAs published ...		50%

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