non-B DB

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non-B DB

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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Non-B DB

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:30.050193

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non-b_db

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:30.050193

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Other names: Non-B DB, non-b_db

non-B DNA forming motifs in mammalian genomes

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Publications

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Non-B DB: a database of predicted non-B DNA-forming motifs in mammalian genomes
PMID: 21097885

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:30.050193

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http://dx.doi.org/10.1093/nar/gks955

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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• Non-B DB: a database of predicted non-B DNA-forming motifs in mammalian genomes PubMed citations: 35.

  35 articles citing: Non-B DB: a database of predicted non-B DNA-forming motifs in mammalian genomes

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  Comprehensive analysis of cancer breakpoints reveals signatures of genetic and epigenetic contribution to cancer genome rearrangements. PMID:33647036

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  Non-B DNA: a major contributor to small- and large-scale variation in nucleotide substitution frequencies across the genome. PMID:33450015

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  Human L1 Transposition Dynamics Unraveled with Functional Data Analysis. PMID:32722770

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  Zscan4 binds nucleosomal microsatellite DNA and protects mouse two-cell embryos from DNA damage. PMID:32219172

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  Unraveling the Regulatory G-Quadruplex Puzzle: Lessons From Genome and Transcriptome-Wide Studies. PMID:31681431

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  Breakpoint junction features of seven DMD deletion mutations. PMID:31645977

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  Oxidative Modification of Guanine in a Potential Z-DNA-Forming Sequence of a Gene Promoter Impacts Gene Expression. PMID:30821442

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  DNA replication and repair kinetics of Alu, LINE-1 and satellite III genomic repetitive elements. PMID:30352618

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  Novel splicing in IGFN1 intron 15 and role of stable G-quadruplex in the regulation of splicing in renal cell carcinoma. PMID:30335789

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  DNA word analysis based on the distribution of the distances between symmetric words. PMID:28389642

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  Permanganate/S1 Nuclease Footprinting Reveals Non-B DNA Structures with Regulatory Potential across a Mammalian Genome. PMID:28237796

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  Recognition of Local DNA Structures by p53 Protein. PMID:28208646

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  p53 Specifically Binds Triplex DNA In Vitro and in Cells. PMID:27907175

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  Integration and Fixation Preferences of Human and Mouse Endogenous Retroviruses Uncovered with Functional Data Analysis. PMID:27309962

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  Intrastrand triplex DNA repeats in bacteria: a source of genomic instability. PMID:26450966

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  Lentivector integration sites in ependymal cells from a model of metachromatic leukodystrophy: non-B DNA as a new factor influencing integration. PMID:25158091

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  Mycobacterium tuberculosis DinG is a structure-specific helicase that unwinds G4 DNA: implications for targeting G4 DNA as a novel therapeutic approach. PMID:25059658

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  Genomic landscape of human, bat, and ex vivo DNA transposon integrations. PMID:24809961

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  DHX9 helicase is involved in preventing genomic instability induced by alternatively structured DNA in human cells. PMID:24049074

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  G-quadruplex structures formed at the HOX11 breakpoint region contribute to its fragility during t(10;14) translocation in T-cell leukemia. PMID:24001773

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  Lighting up left-handed Z-DNA: photoluminescent carbon dots induce DNA B to Z transition and perform DNA logic operations. PMID:23814186

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  Molecular topography of the MED12-deleted region in smooth muscle tumors: a possible link between non-B DNA structures and hypermutability. PMID:23738817

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  Global regulation of promoter melting in naive lymphocytes. PMID:23706737

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  An appraisal of human mitochondrial DNA instability: new insights into the role of non-canonical DNA structures and sequence motifs. PMID:23555828

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  Preferential binding of hot spot mutant p53 proteins to supercoiled DNA in vitro and in cells. PMID:23555710

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  Mutation spectrum of Drosophila CNVs revealed by breakpoint sequencing. PMID:23259534

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  Non-B DB v2.0: a database of predicted non-B DNA-forming motifs and its associated tools. PMID:23125372

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  Comparative analysis of somatic copy-number alterations across different human cancer types reveals two distinct classes of breakpoint hotspots. PMID:22899649

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  Mutant p53 is a transcriptional co-factor that binds to G-rich regulatory regions of active genes and generates transcriptional plasticity. PMID:22894900

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  Triplex DNA-binding proteins are associated with clinical outcomes revealed by proteomic measurements in patients with colorectal cancer. PMID:22682314

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  Searching for non-B DNA-forming motifs using nBMST (non-B DNA motif search tool). PMID:22470144

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  A genome-wide analysis of common fragile sites: what features determine chromosomal instability in the human genome? PMID:22456607

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  Non-B DNA Secondary Structures and Their Resolution by RecQ Helicases. PMID:21977309

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  On the sequence-directed nature of human gene mutation: the role of genomic architecture and the local DNA sequence environment in mediating gene mutations underlying human inherited disease. PMID:21853507

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  The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection. PMID:21177655
• http://dx.doi.org/10.1093/nar/gks955

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More detailed information about this field from each metasource. ×

structure databases

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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nucleic acid structure

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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structure prediction

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:30.050193

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dna

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:30.050193

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dna polymorphism

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:30.050193

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genetic variation

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:30.050193

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structure analysis

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:30.050193

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structure nucleic acid structure structure prediction dna dna polymorphism genetic variation structure analysis