DAVID Bioinformatics Resources
Other names: david_bioinformatics_resources
This source may no longer be available. No known URL could be resolved successfully.
The Database for Annotation, Visualization and Integrated Discovery (DAVID) provides a comprehensive set of functional annotation tools for investigators to understand biological meaning behind large list of genes.
Description
More detailed information about this field from each metasource.
The Database for Annotation, Visualization and Integrated Discovery (DAVID) provides a comprehensive set of functional annotation tools for investigators to understand biological meaning behind large list of genes.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:19.923820
Webpage:
http://david.abcc.ncifcrf.gov/home.jspWebpage
More detailed information about this field from each metasource.
http://david.abcc.ncifcrf.gov/home.jsp
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:19.923820
Publications:
Publications
More detailed information about this field from each metasource.
DAVID: Database for Annotation, Visualization, and Integrated Discovery
PMID: 12734009
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:19.923820
DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists
PMID: 17576678
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:19.923820
Publications
More detailed information about this field from each metasource.
DAVID: Database for Annotation, Visualization, and Integrated Discovery
PMID: 12734009
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:19.923820
DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists
PMID: 17576678
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:19.923820
-
DAVID: Database for Annotation, Visualization, and Integrated Discovery
PubMed citations: 4523.
4523 articles citing: DAVID: Database for Annotation, Visualization, and Integrated Discovery
Computational analyses of mechanism of action (MoA): data, methods and integration. PMID:35360890
Identifying Active Substances and the Pharmacological Mechanism of Houttuynia cordata Thunb. in Treating Radiation-Induced Lung Injury Based on Network Pharmacology and Molecular Docking Verification. PMID:35360660
Transcriptional atlas analysis from multiple tissues reveals the expression specificity patterns in beef cattle. PMID:35351103
Liver X receptor-agonist treatment rescues degeneration in a Drosophila model of hereditary spastic paraplegia. PMID:35346366
Eucommia ulmoides Oliver-Tribulus terrestris L. Drug Pair Regulates Ferroptosis by Mediating the Neurovascular-Related Ligand-Receptor Interaction Pathway- A Potential Drug Pair for Treatment Hypertension and Prevention Ischemic Stroke. PMID:35345408
Comprehensive proteomic profiling of plasma and serum phosphatidylserine-positive extracellular vesicles reveals tissue-specific proteins. PMID:35340435
Uncovering the Pharmacological Mechanisms of Gexia-Zhuyu Formula (GXZY) in Treating Liver Cirrhosis by an Integrative Pharmacology Strategy. PMID:35330838
Multi-Omics Characterization of Early- and Adult-Onset Major Depressive Disorder. PMID:35330412
Proteomic Alterations in Follicular Fluid of Human Small Antral Follicles Collected from Polycystic Ovaries-A Pilot Study. PMID:35330141
Gene Expression over Time during Cell Transformation Due to Non-Genotoxic Carcinogen Treatment of Bhas 42 Cells. PMID:35328637
Bioinformatics Analysis and Identification of Potential Genes Associated with Pathogenesis and Prognosis of Gastric Cancer. PMID:35325407
Integrated Analysis of Transcriptomic and Genomic Data Reveals Blood Biomarkers With Diagnostic and Prognostic Potential in Non-small Cell Lung Cancer. PMID:35309509
Establishment of a Combined Diagnostic Model of Abdominal Aortic Aneurysm with Random Forest and Artificial Neural Network. PMID:35299890
Adult mouse fibroblasts retain organ-specific transcriptomic identity. PMID:35293863
Identification of hub genes and pathways in bladder cancer using bioinformatics analysis. PMID:35291419
Identification of autophagy related genes in predicting the prognosis and aiding 5- fluorouracil therapy of colorectal cancer. PMID:35284678
Dishevelled-Associated Activator of Morphogenesis 2 (DAAM2) Predicts the Immuno-Hot Phenotype in Pancreatic Adenocarcinoma. PMID:35281277
Circ_0001174 facilitates osteosarcoma cell proliferation, migration, and invasion by targeting the miR-186-5p/MACC1 axis. PMID:35279159
A pan-cancer analysis of the oncogenic role of Holliday junction recognition protein in human tumors. PMID:35274047
Integrated analysis of differentially expressed genes and a ceRNA network to identify hub lncRNAs and potential drugs for multiple sclerosis. PMID:35273684
Complete Genome Sequence Analysis of Ralstonia solanacearum Strain PeaFJ1 Provides Insights Into Its Strong Virulence in Peanut Plants. PMID:35273586
Centrosomal protein 290 is a novel prognostic indicator that modulates liver cancer cell ferroptosis via the Nrf2 pathway. PMID:35271462
Identification of Candidate lncRNA and Pseudogene Biomarkers Associated with Carbon-Nanotube-Induced Malignant Transformation of Lung Cells and Prediction of Potential Preventive Drugs. PMID:35270630
The transcription factor HLH-26 controls probiotic-mediated protection against intestinal infection through up-regulation of the Wnt/BAR-1 pathway. PMID:35263319
Biological response of adrenal carcinoma and melanoma cells to mitotane treatment. PMID:35261634
Comprehensive Analysis of LncRNA AC010789.1 Delays Androgenic Alopecia Progression by Targeting MicroRNA-21 and the Wnt/β-Catenin Signaling Pathway in Hair Follicle Stem Cells. PMID:35242164
Temporal and spatial cellular and molecular pathological alterations with single-cell resolution in the adult spinal cord after injury. PMID:35232960
Screening the components of Saussurea involucrata for novel targets for the treatment of NSCLC using network pharmacology. PMID:35227278
Clinical Significance of TET2 in Female Cancers. PMID:35223782
Identification of Hub Genes in Pancreatic Ductal Adenocarcinoma Using Bioinformatics Analysis. PMID:35223598
MYC/MAX-Activated LINC00958 Promotes Lung Adenocarcinoma by Oncogenic Transcriptional Reprogramming Through HOXA1 Activation. PMID:35223488
HOXB4 Mis-Regulation Induced by Microcystin-LR and Correlated With Immune Infiltration Is Unfavorable to Colorectal Cancer Prognosis. PMID:35211403
Transgenerational Transcriptomic and DNA Methylome Profiling of Mouse Fetal Testicular Germline and Somatic Cells after Exposure of Pregnant Mothers to Tributyltin, a Potent Obesogen. PMID:35208169
Gene Ontology Groups and Signaling Pathways Regulating the Process of Avian Satellite Cell Differentiation. PMID:35205287
A Pancancer Analysis of the Oncogenic Role of S100 Calcium Binding Protein A7 (S100A7) in Human Tumors. PMID:35205150
Dimensionality Reduction and Louvain Agglomerative Hierarchical Clustering for Cluster-Specified Frequent Biomarker Discovery in Single-Cell Sequencing Data. PMID:35198011
Biomarker Value of miR-221 and miR-222 as Potential Substrates in the Differential Diagnosis of Papillary Thyroid Cancer Based on Data Synthesis and Bioinformatics Approach. PMID:35197926
Evolutionary impacts of purine metabolism genes on mammalian oxidative stress adaptation. PMID:35194983
A hemimetabolous wing development suggests the wing origin from lateral tergum of a wingless ancestor. PMID:35190538
Network Pharmacology Prediction and Molecular Docking-Based Strategy to Discover the Potential Pharmacological Mechanism of Wen-Yu-Jin against Pulmonary Fibrosis in a Mouse Model. PMID:35186103
Gene expression profiling reveals candidate biomarkers and probable molecular mechanisms in chronic stress. PMID:35184642
Multi-omics reveals mitochondrial metabolism proteins susceptible for drug discovery in AML. PMID:35177813
Label-Free Quantitative Proteomics to Explore the Action Mechanism of the Pharmaceutical-Grade Triticum vulgare Extract in Speeding Up Keratinocyte Healing. PMID:35164377
Proteomic Analysis of Protective Effects of Epimedium Flavonoids against Ethanol-Induced Toxicity in Retinoic Acid-Treated SH-SY5Y Cells. PMID:35164291
Clinical Utility of a Unique Genome-Wide DNA Methylation Signature for KMT2A-Related Syndrome. PMID:35163737
Time Series Ovarian Transcriptome Analyses of the Porcine Estrous Cycle Reveals Gene Expression Changes during Steroid Metabolism and Corpus Luteum Development. PMID:35158699
In Silico Studies of Phytoconstituents from Piper longum and Ocimum sanctum as ACE2 and TMRSS2 Inhibitors: Strategies to Combat COVID-19. PMID:35157239
Genetic Parameter Estimation and Genome-Wide Association Study-Based Loci Identification of Milk-Related Traits in Chinese Holstein. PMID:35154251
Single-molecule long-read sequencing reveals the potential impact of posttranscriptional regulation on gene dosage effects on the avian Z chromosome. PMID:35148676
As a prognostic biomarker of clear cell renal cell carcinoma RUFY4 predicts immunotherapy responsiveness in a PDL1-related manner. PMID:35135552
Lentinan Supplementation Protects the Gut-Liver Axis and Prevents Steatohepatitis: The Role of Gut Microbiota Involved. PMID:35127789
PBK/TOPK Inhibitor Suppresses the Progression of Prolactinomas. PMID:35126305
Methylation of PLIN5 is a crucial biomarker and is involved in ovarian cancer development. PMID:35117648
Identification of key protein-coding genes in lung adenocarcinomas based on bioinformatic analysis. PMID:35117040
Down-regulated hsa_circ_0067934 facilitated the progression of gastric cancer by sponging hsa-mir-4705 to downgrade the expression of BMPR1B. PMID:35117027
CDCA1/2/3/5/7/8 as novel prognostic biomarkers and CDCA4/6 as potential targets for gastric cancer. PMID:35116645
Identification of key genes and pathways at the downstream of S100PBP in pancreatic cancer cells by integrated bioinformatical analysis. PMID:35116411
Transcriptome analysis of the effect of a novel human serine protease inhibitor SPINK13 on gene expression in MHCC97-H cells. PMID:35116303
Identification of six hub genes and analysis of their correlation with drug sensitivity in acute myeloid leukemia through bioinformatics. PMID:35116245
An instructive role for Interleukin-7 receptor α in the development of human B-cell precursor leukemia. PMID:35115489
Analysis of the effect of NEKs on the prognosis of patients with non-small-cell lung carcinoma based on bioinformatics. PMID:35105934
Immune Activity and Response Differences of Oncolytic Viral Therapy in Recurrent Glioblastoma: Gene Expression Analyses of a Phase IB Study. PMID:35105718
Chrysin, which targets PLAU, protects PC12 cells from OGD/R-stimulated damage through repressing the NF-κB signaling pathway. PMID:35097165
Identification of four novel hub genes as monitoring biomarkers for colorectal cancer. PMID:35093172
Proteomic profiling of cisplatin-resistant and cisplatin-sensitive germ cell tumour cell lines using quantitative mass spectrometry. PMID:35084545
Identification of key regulators in Sarcoidosis through multidimensional systems biological approach. PMID:35075176
Overexpression of chaperonin containing TCP1 subunit 7 has diagnostic and prognostic value for hepatocellular carcinoma. PMID:35073517
Modular characteristics and the mechanism of Chinese medicine's treatment of gastric cancer: a data mining and pharmacology-based identification. PMID:35071471
The establishment of a hub differential gene model to predict prognosis in stage II and III right- and left-sided colon cancer patients. PMID:35071457
Smell Detection Agent Optimisation Framework and Systems Biology Approach to Detect Dys-Regulated Subnetwork in Cancer Data. PMID:35053185
Key genes associated with prognosis and metastasis of clear cell renal cell carcinoma. PMID:35036081
Promising novel biomarkers and candidate small-molecule drugs for lung adenocarcinoma: Evidence from bioinformatics analysis of high-throughput data. PMID:35028418
Combination of Wnt/β-Catenin Targets S100A4 and DKK1 Improves Prognosis of Human Colorectal Cancer. PMID:35008201
Lipopolysaccharide-Induced Transcriptional Changes in LBP-Deficient Rat and Its Possible Implications for Liver Dysregulation during Sepsis. PMID:35005033
The diagnostic and prognostic significance of small nuclear ribonucleoprotein Sm D1 aberrantly high expression in hepatocellular carcinoma. PMID:34976182
Loss of USP28 and SPINT2 expression promotes cancer cell survival after whole genome doubling. PMID:34962618
Bulk and Single-Cell Profiling of Breast Tumors Identifies TREM-1 as a Dominant Immune Suppressive Marker Associated With Poor Outcomes. PMID:34956864
Somatic DNA demethylation generates tissue-specific methylation states and impacts flowering time. PMID:34954804
A Meta-Analysis of Human Transcriptomics Data in the Context of Peritoneal Dialysis Identifies Novel Receptor-Ligand Interactions as Potential Therapeutic Targets. PMID:34948074
Deepening into Intracellular Signaling Landscape through Integrative Spatial Proteomics and Transcriptomics in a Lymphoma Model. PMID:34944421
Sodium Selenite Enhances Antibiotics Sensitivity of Pseudomonas aeruginosa and Deceases Its Pathogenicity by Inducing Oxidative Stress and Inhibiting Quorum Sensing System. PMID:34942975
Exploring the Potential Targets and Mechanisms of Huang Lian Jie Du Decoction in the Treatment of Coronavirus Disease 2019 Based on Network Pharmacology. PMID:34938107
Methylome inheritance and enhancer dememorization reset an epigenetic gate safeguarding embryonic programs. PMID:34936444
Genome-wide chromosomal association of Upf1 is linked to Pol II transcription in Schizosaccharomyces pombe. PMID:34928380
Cytokine and Nitric Oxide-Dependent Gene Regulation in Islet Endocrine and Nonendocrine Cells. PMID:34927076
Potential Novel Modules and Hub Genes as Prognostic Candidates of Thyroid Cancer by Weighted Gene Co-Expression Network Analysis. PMID:34908870
The Chlamydomonas bZIP transcription factor BLZ8 confers oxidative stress tolerance by inducing the carbon-concentrating mechanism. PMID:34893905
Changes in Methylation across Structural and MicroRNA Genes Relevant for Progression and Metastasis in Colorectal Cancer. PMID:34885060
(20S) Ginsenoside Rh2 Exerts Its Anti-Tumor Effect by Disrupting the HSP90A-Cdc37 System in Human Liver Cancer Cells. PMID:34884975
Exploring the Mechanisms of Arsenic Trioxide (Pishuang) in Hepatocellular Carcinoma Based on Network Pharmacology. PMID:34880920
Combined Metabolomics and Network Toxicology to Explore the Molecular Mechanism of Phytolacca acinose Roxb-Induced Hepatotoxicity in Zebrafish Larvae in Vivo. PMID:34876912
Analysis of miRNA Profiles and the Regulatory Network in Congenital Pulmonary Airway Malformations. PMID:34869091
LIMD2 is a Prognostic and Predictive Marker in Patients With Esophageal Cancer Based on a ceRNA Network Analysis. PMID:34868263
Manganese transport by Streptococcus sanguinis in acidic conditions and its impact on growth in vitro and in vivo. PMID:34862691
Integrative investigation of the TF-miRNA coregulatory network involved in the inhibition of breast cancer cell proliferation by resveratrol. PMID:34856073
Association of Circulating Biomarkers of lnc-IGSF3-1:1, SCOC-AS1, and SLC8A1-AS1 with Salt Sensitivity of Blood Pressure in Chinese Population. PMID:34855149
Whole Blood Expression Pattern of Inflammation and Redox Genes in Mild Alzheimer's Disease. PMID:34848989
Analysis of Differentially Expressed Genes That Aggravate Metabolic Diseases in Depression. PMID:34833079
Identification and Characterization of Downy Mildew-Responsive microRNAs in Indian Vitis vinifera by High-Throughput Sequencing. PMID:34829189
Identification of LIG1 and LIG3 as prognostic biomarkers in breast cancer. PMID:34825062
Expression and Prognostic Role of E2F2 in Hepatocellular Carcinoma. PMID:34824545
Advances in the application of Let-7 microRNAs in the diagnosis, treatment and prognosis of leukemia. PMID:34820000
Hippocampal neurons' cytosolic and membrane-bound ribosomal transcript profiles are differentially regulated by learning and subsequent sleep. PMID:34819370
Evolutionary epigenomic analyses in mammalian early embryos reveal species-specific innovations and conserved principles of imprinting. PMID:34818044
CD153/CD30 signaling promotes age-dependent tertiary lymphoid tissue expansion and kidney injury. PMID:34813503
Genome-wide DNA methylation analysis of pulmonary function in middle and old-aged Chinese monozygotic twins. PMID:34809630
Mechanistic insights into the renoprotective role of curcumin in cisplatin-induced acute kidney injury: network pharmacology analysis and experimental validation. PMID:34802380
The U1 snRNP component RBP45d regulates temperature-responsive flowering in Arabidopsis. PMID:34791475
AZD9291-resistant non-small cell lung cancer cell-derived exosomal lnc-MZT2A-5:1 induces the activation of fibroblasts. PMID:34790799
Identification of aberrantly methylated-differentially expressed genes and potential agents for Ewing sarcoma. PMID:34790763
MGEnrichment: A web application for microglia gene list enrichment analysis. PMID:34788279
Homeoprotein SIX1 compromises antitumor immunity through TGF-β-mediated regulation of collagens. PMID:34782761
MiR-181a Targets RSPO2 and Regulates Bone Morphogenetic Protein - WNT Signaling Crosstalk During Chondrogenic Differentiation of Mesenchymal Stromal Cells. PMID:34778258
Tet1 Regulates Astrocyte Development and Cognition of Mice Through Modulating GluA1. PMID:34778243
Web-based transcriptome analysis determines a sixteen-gene signature and associated drugs on hearing loss patients: A bioinformatics approach. PMID:34758154
The Identified Hub Gene GlcN in Osteoarthritis Progression and Treatment. PMID:34754325
Altered Chromatin States Drive Cryptic Transcription in Aging Mammalian Stem Cells. PMID:34746802
Genome-Wide Association Study of Growth Performance and Immune Response to Newcastle Disease Virus of Indigenous Chicken in Rwanda. PMID:34745207
Single-Cell Analysis Revealed the Role of CD8+ Effector T Cells in Preventing Cardioprotective Macrophage Differentiation in the Early Phase of Heart Failure. PMID:34745139
Comparative methylation and RNA-seq expression analysis in CpG context to identify genes involved in Backfat vs. Liver diversification in Nanchukmacdon Pig. PMID:34743693
A gene toolbox for monitoring autophagy transcription. PMID:34728604
An organoid-based screen for epigenetic inhibitors that stimulate antigen presentation and potentiate T-cell-mediated cytotoxicity. PMID:34725507
Peripheral Blood-Based Gene Expression Studies in Schizophrenia: A Systematic Review. PMID:34721526
An In-Silico, In-Vitro and In-Vivo Combined Approach to Identify NMNATs as Potential Protein Targets of ProEGCG for Treatment of Endometriosis. PMID:34721014
Genome-wide screening of novel RT-qPCR reference genes for study of GLRaV-3 infection in wine grapes and refinement of an RNA isolation protocol for grape berries. PMID:34711253
Integrated bioinformatics analyses of key genes involved in hepatocellular carcinoma immunosuppression. PMID:34691257
Integrative Systems Biology Analysis Elucidates Mastitis Disease Underlying Functional Modules in Dairy Cattle. PMID:34691146
Maternal High-Fat Diet Disturbs the DNA Methylation Profile in the Brown Adipose Tissue of Offspring Mice. PMID:34690924
Hepatocyte-Specific Phgdh-Deficient Mice Culminate in Mild Obesity, Insulin Resistance, and Enhanced Vulnerability to Protein Starvation. PMID:34684470
The Evolution of Clinically Aggressive Triple-Negative Breast Cancer Shows a Large Mutational Diversity and Early Metastasis to Lymph Nodes. PMID:34680239
Brain Cancer Prediction Based on Novel Interpretable Ensemble Gene Selection Algorithm and Classifier. PMID:34679634
Bioinformatics analysis identifies DYNC1I1 as prognosis marker in male patients with liver hepatocellular carcinoma. PMID:34679093
Extracellular calcium alters calcium-sensing receptor network integrating intracellular calcium-signaling and related key pathway. PMID:34663830
Qualitative lysine crotonylome analysis in the ovarian tissue of Harmonia axyridis (Pallas). PMID:34662345
Identification of Gene Signature as Diagnostic and Prognostic Blood Biomarker for Early Hepatocellular Carcinoma Using Integrated Cross-Species Transcriptomic and Network Analyses. PMID:34659334
CD20 positive CD8 T cells are a unique and transcriptionally-distinct subset of T cells with distinct transmigration properties. PMID:34654826
GNG7 and ADCY1 as diagnostic and prognostic biomarkers for pancreatic adenocarcinoma through bioinformatic-based analyses. PMID:34650124
Metabolic Analysis of Potential Key Genes Associated with Systemic Lupus Erythematosus Using Liquid Chromatography-Mass Spectrometry. PMID:34646335
Integrated Profiling Identifies PLOD3 as a Potential Prognostic and Immunotherapy Relevant Biomarker in Colorectal Cancer. PMID:34646265
Integrative Predictive Modeling of Metastasis in Melanoma Cancer Based on MicroRNA, mRNA, and DNA Methylation Data. PMID:34631789
Transcriptome Analysis Identifies Altered Biological Processes and Novel Markers in Human Immunodeficiency Virus-1 Long-Term Non-Progressors. PMID:34623779
METTL3 Is Involved in the Development of Graves' Disease by Inducing SOCS mRNA m6A Modification. PMID:34616359
Identification of LINC00173 in Myasthenia Gravis by Integration Analysis of Aberrantly Methylated- Differentially Expressed Genes and ceRNA Networks. PMID:34603387
Exploration of alcohol use disorder-associated brain miRNA-mRNA regulatory networks. PMID:34601489
The induction of a mesenchymal phenotype by platelet cloaking of cancer cells is a universal phenomenon. PMID:34592589
Identification of potential pathogenic mutations in Chinese children with first branchial cleft anomalies detected by whole-exome sequencing. PMID:34589676
Integration and gene co-expression network analysis of scRNA-seq transcriptomes reveal heterogeneity and key functional genes in human spermatogenesis. PMID:34580317
Identification of Immune Function-Related Subtypes in Cutaneous Melanoma. PMID:34575074
Enhanced Directed Random Walk for the Identification of Breast Cancer Prognostic Markers from Multiclass Expression Data. PMID:34573857
RNA Profiles of the Korat Chicken Breast Muscle with Increased Carnosine Content Produced through Dietary Supplementation with β-Alanine or L-Histidine. PMID:34573562
Identification of Long Non-Coding RNAs Involved in Porcine Fat Deposition Using Two High-Throughput Sequencing Methods. PMID:34573356
Microarray Analysis Revealed Inflammatory Transcriptomic Changes after LSL60101 Treatment in 5XFAD Mice Model. PMID:34573297
Modulation of Cellular MicroRNA by HIV-1 in Burkitt Lymphoma Cells-A Pathway to Promoting Oncogenesis. PMID:34573283
Attenuation of PITPNM1 Signaling Cascade Can Inhibit Breast Cancer Progression. PMID:34572478
The Emerging Plasticizer Alternative DINCH and Its Metabolite MINCH Induce Oxidative Stress and Enhance Inflammatory Responses in Human THP-1 Macrophages. PMID:34572016
Immune Mechanism, Gene Module, and Molecular Subtype Identification of Astragalus Membranaceus in the Treatment of Dilated Cardiomyopathy: An Integrated Bioinformatics Study. PMID:34567206
Identification of a miRNA-mRNA Regulatory Networks in Placental Tissue Associated With Tibetan High Altitude Adaptation. PMID:34567059
MTF1 Is Essential for the Expression of MT1B, MT1F, MT1G, and MT1H Induced by PHMG, but Not CMIT, in the Human Pulmonary Alveolar Epithelial Cells. PMID:34564354
Identification of Key Candidate Genes and Chemical Perturbagens in Diabetic Kidney Disease Using Integrated Bioinformatics Analysis. PMID:34557161
Rapid Evolution of Expression Levels in Hepatocellular Carcinoma. PMID:34552665
Hub Genes and Key Pathways of Intervertebral Disc Degeneration: Bioinformatics Analysis and Validation. PMID:34545328
SRSF protein kinase 1 modulates RAN translation and suppresses CGG repeat toxicity. PMID:34542927
Pan-Cancer Analysis of Atrial-Fibrillation-Related Innate Immunity Gene ANXA4. PMID:34540918
Identification of Key Genes Associated With the Process of Hepatitis B Inflammation and Cancer Transformation by Integrated Bioinformatics Analysis. PMID:34539726
PlantGSAD: a comprehensive gene set annotation database for plant species. PMID:34534340
Enrichment of Phosphorylated Tau (Thr181) and Functionally Interacting Molecules in Chronic Traumatic Encephalopathy Brain-derived Extracellular Vesicles. PMID:34527416
Proteomic Profiling of Extracellular Vesicles Separated from Plasma of Former National Football League Players at Risk for Chronic Traumatic Encephalopathy. PMID:34527415
Integrative Analysis of the Roles of lncRNAs and mRNAs in Itaconate-Mediated Protection Against Liver Ischemia-Reperfusion Injury in Mice. PMID:34526799
Vildagliptin, a dipeptidyl peptidase-4 inhibitor, attenuated endothelial dysfunction through miRNAs in diabetic rats. PMID:34522267
RNA Sequence Profiling Reveals Unique Immune and Metabolic Features of Breast Cancer Brain Metastases. PMID:34513670
Global analysis of lysine acetylation in soybean leaves. PMID:34504199
Air pollution-induced epigenetic changes: disease development and a possible link with hypersensitivity pneumonitis. PMID:34498177
Integrative Analysis of Gene Expression Data by RNA Sequencing for Differential Diagnosis of Acute Leukemia: Potential Application of Machine Learning. PMID:34497767
Screening and Identification of Key Biomarkers of Gastric Cancer: Three Genes Jointly Predict Gastric Cancer. PMID:34485109
INHBA is a novel mediator regulating cellular senescence and immune evasion in colorectal cancer. PMID:34476008
The Alterations and Potential Roles of MCMs in Breast Cancer. PMID:34475953
Amyloid beta acts synergistically as a pro-inflammatory cytokine. PMID:34464705
Heparanase is a novel biomarker for immune infiltration and prognosis in breast cancer. PMID:34461608
Transcriptomic Analyses of the Adenoma-Carcinoma Sequence Identify Hallmarks Associated With the Onset of Colorectal Cancer. PMID:34458146
Identification of differentially expressed genes using microarray analysis and COL6A1 induction of bone metastasis in non-small cell lung cancer. PMID:34457048
An Integrative Systems Biology Approach Identifies Molecular Signatures Associated with Gallbladder Cancer Pathogenesis. PMID:34441816
Predicting Agents That Can Overcome 5-FU Resistance in Colorectal Cancers via Pharmacogenomic Analysis. PMID:34440086
Application of Weighted Gene Coexpression Network Analysis to Identify Key Modules and Hub Genes in Systemic Juvenile Idiopathic Arthritis. PMID:34435051
Prognostic role of DFNA5 in head and neck squamous cell carcinoma revealed by systematic expression analysis. PMID:34433433
Identifying a possible new target for diagnosis and treatment of postmenopausal osteoporosis through bioinformatics and clinical sample analysis. PMID:34430595
Serum proteomics reveals disorder of lipoprotein metabolism in sepsis. PMID:34429344
Interactome analysis of Bag-1 isoforms reveals novel interaction partners in endoplasmic reticulum-associated degradation. PMID:34428256
Immune-associated molecular occurrence and prognosis predictor of hepatocellular carcinoma: an integrated analysis of GEO datasets. PMID:34424809
Haplotype-resolved de novo assembly of the Vero cell line genome. PMID:34417462
Screening differentially expressed genes between endometriosis and ovarian cancer to find new biomarkers for endometriosis. PMID:34409913
High Expression of RhoF Predicts Worse Overall Survival: A Potential Therapeutic Target for non-M3 Acute Myeloid Leukemia. PMID:34405015
Integrated multi-omics analysis of RB-loss identifies widespread cellular programming and synthetic weaknesses. PMID:34404904
Bioinformatics analysis of the transcriptional expression of minichromosome maintenance proteins as potential indicators of survival in patients with cervical cancer. PMID:34404366
Signature of prognostic epithelial-mesenchymal transition related long noncoding RNAs (ERLs) in hepatocellular carcinoma. PMID:34397721
Dynamic Observation of Autophagy and Transcriptome Profiles in a Mouse Model of Bleomycin-Induced Pulmonary Fibrosis. PMID:34395518
Potential genes and pathways associated with heterotopic ossification derived from analyses of gene expression profiles. PMID:34389038
Mapping the genetic architecture of human traits to cell types in the kidney identifies mechanisms of disease and potential treatments. PMID:34385711
Excavating the pathogenic gene of breast cancer based on high throughput data of tumor and somatic reprogramming. PMID:34384323
LncTx: A network-based method to repurpose drugs acting on the survival-related lncRNAs in lung cancer. PMID:34377365
Comparative transcriptome analyses reveal genes associated with SARS-CoV-2 infection of human lung epithelial cells. PMID:34376762
Identification of Potential Prognostic Biomarkers Associated With Cancerometastasis in Skin Cutaneous Melanoma. PMID:34367245
A ubiquitin-like protein encoded by the "noncoding" RNA TINCR promotes keratinocyte proliferation and wound healing. PMID:34351912
RSPH14 regulates the proliferation, cell cycle progression, and apoptosis of non-small cell lung cancer cells. PMID:34351079
Comprehensive investigation of RNA-sequencing dataset reveals the hub genes and molecular mechanisms of coronavirus disease 2019 acute respiratory distress syndrome. PMID:34350693
Construction and Validation of an Immune-Based Prognostic Model for Pancreatic Adenocarcinoma Based on Public Databases. PMID:34335699
Parental methylome reprogramming in human uniparental blastocysts reveals germline memory transition. PMID:34330789
Plasma hsa-mir-19b is a potential LevoDopa therapy marker. PMID:34328686
Identification of the Hub Genes in Alzheimer's Disease. PMID:34326892
Decrypting the role of predicted SARS-CoV-2 miRNAs in COVID-19 pathogenesis: A bioinformatics approach. PMID:34320442
Text mining of gene-phenotype associations reveals new phenotypic profiles of autism-associated genes. PMID:34315992
Bioinformatics analysis of epigenetic and SNP-related molecular markers in systemic lupus erythematosus. PMID:34306371
The Potential Effect of Rhizoma coptidis on Polycystic Ovary Syndrome Based on Network Pharmacology and Molecular Docking. PMID:34306142
Circulating miRNAs in Serum as Biomarkers for Early Diagnosis of Non-small Cell Lung Cancer. PMID:34306018
The Compressed Vocabulary of Microbial Life. PMID:34305827
Single worm transcriptomics identifies a developmental core network of oscillating genes with deep conservation across nematodes. PMID:34301622
Identification of Potential Signatures and Their Functions for Acute Lymphoblastic Leukemia: A Study Based on the Cancer Genome Atlas. PMID:34295352
Comparison of transcriptome between high- and low-marbling fineness in longissimus thoracis muscle of Korean cattle. PMID:34293845
The signal transducer CD24 suppresses the germ cell program and promotes an ectodermal rather than mesodermal cell fate in embryonal carcinomas. PMID:34293822
Environmental responsiveness of flowering time in cassava genotypes and associated transcriptome changes. PMID:34288936
A combined GWAS approach reveals key loci for socially-affected traits in Yorkshire pigs. PMID:34285319
Mutation in FBXO32 causes dilated cardiomyopathy through up-regulation of ER-stress mediated apoptosis. PMID:34272480
Prognostic significance and oncogene function of cathepsin A in hepatocellular carcinoma. PMID:34272452
Action potential-coupled Rho GTPase signaling drives presynaptic plasticity. PMID:34269176
oxLDL-Induced Trained Immunity Is Dependent on Mitochondrial Metabolic Reprogramming. PMID:34267957
Comparative Proteomic Analysis of Polarized Human THP-1 and Mouse RAW264.7 Macrophages. PMID:34267761
KDM4 Orchestrates Epigenomic Remodeling of Senescent Cells and Potentiates the Senescence-Associated Secretory Phenotype. PMID:34263179
Global Screening of LUBAC and OTULIN Interacting Proteins by Human Proteome Microarray. PMID:34262903
Epithelial Splicing Regulatory Protein 1 Is Overexpressed in Breast Cancer and Predicts Poor Prognosis for Breast Cancer Patients. PMID:34262011
Ten-gene signature reveals the significance of clinical prognosis and immuno-correlation of osteosarcoma and study on novel skeleton inhibitors regarding MMP9. PMID:34261456
An Investigation of the Antigastric Cancer Effect in Tumor Microenvironment of Radix Rhei Et Rhizome: A Network Pharmacology Study. PMID:34257692
Identification of Potential Biomarkers From Hepatocellular Carcinoma With MT1 Deletion. PMID:34257549
Identification and Comparative Analysis of Long Non-coding RNAs in High- and Low-Fecundity Goat Ovaries During Estrus. PMID:34249080
Microbiota Modulates Cardiac Transcriptional Responses to Intermittent Hypoxia and Hypercapnia. PMID:34248668
Muscarinic receptor M3 contributes to intestinal stem cell maintenance via EphB/ephrin-B signaling. PMID:34244422
Comprehensive Bioinformatics Analysis of mRNA Expression Profiles and Identification of a miRNA-mRNA Network Associated with the Pathogenesis of Low-Grade Gliomas. PMID:34234557
Castration delays epigenetic aging and feminizes DNA methylation at androgen-regulated loci. PMID:34227937
Aberrantly methylated-differentially genes and pathways among Iranian patients with colorectal cancer. PMID:34217303
Identification of a Seven-lncRNA-mRNA Signature for Recurrence and Prognostic Prediction in Relapsed Acute Lymphoblastic Leukemia Based on WGCNA and LASSO Analyses. PMID:34211824
Aberrant Alternative Splicing in U2af1/Tet2 Double Mutant Mice Contributes to Major Hematological Phenotypes. PMID:34203454
Transcriptome Analyses Provide Insights into the Aggressive Behavior toward Conspecific and Heterospecific in Thitarodes xiaojinensis (Lepidoptera: Hepialidae). PMID:34201917
The glycosyltransferase ST3GAL2 is regulated by miR-615-3p in the intestinal tract of Campylobacter jejuni infected mice. PMID:34183045
Co-expression Network Analysis Reveals Key Genes Related to Ankylosing spondylitis Arthritis Disease: Computational and Experimental Validation. PMID:34179194
A Comprehensive Analysis of the Downregulation of miRNA-1827 and Its Prognostic Significance by Targeting SPTBN2 and BCL2L1 in Ovarian Cancer. PMID:34179092
N6-Methylandenosine-Related lncRNAs in Tumor Microenvironment Are Potential Prognostic Biomarkers in Colon Cancer. PMID:34178697
The Role of Early Growth Response Family Members 1-4 in Prognostic Value of Breast Cancer. PMID:34178038
BAP1/ASXL complex modulation regulates epithelial-mesenchymal transition during trophoblast differentiation and invasion. PMID:34170818
Nuclear ADP-ribosylation drives IFNγ-dependent STAT1α enhancer formation in macrophages. PMID:34168143
CXCL10 potentiates immune checkpoint blockade therapy in homologous recombination-deficient tumors. PMID:34158843
Multilevel systems biology analysis of lung transcriptomics data identifies key miRNAs and potential miRNA target genes for SARS-CoV-2 infection. PMID:34157472
Identification of candidate targets for the diagnosis and treatment of atherosclerosis by bioinformatics analysis. PMID:34150004
Genome Scan for Variable Genes Involved in Environmental Adaptations of Nubian Ibex. PMID:34142199
Comprehensive Search for Novel Circulating miRNAs and Axon Guidance Pathway Proteins Associated with Risk of ESKD in Diabetes. PMID:34140396
Flower Development in Cassava Is Feminized by Cytokinin, While Proliferation Is Stimulated by Anti-Ethylene and Pruning: Transcriptome Responses. PMID:34122486
Global proteomic analyses of human cytotrophoblast differentiation/invasion. PMID:34121116
Characterization of DNA Methylation and Screening of Epigenetic Markers in Polycystic Ovary Syndrome. PMID:34113617
Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19. PMID:34112877
Aging- and Tumor-Mediated Increase in CD8+CD28- T Cells Might Impose a Strong Barrier to Success of Immunotherapy in Glioblastoma. PMID:34103370
Comparative analysis of hypothalamus transcriptome between laying hens with different egg-laying rates. PMID:34102485
A Phase 2 Randomised Clinical Trial Assessing the Tolerability of Two Different Ratios of Medicinal Cannabis in Patients With High Grade Gliomas. PMID:34094937
Bioinformatics Analysis of a Prognostic miRNA Signature and Potential Key Genes in Pancreatic Cancer. PMID:34094925
PredTAD: A machine learning framework that models 3D chromatin organization alterations leading to oncogene dysregulation in breast cancer cell lines. PMID:34093998
Comprehensive evaluation of microRNA-10b in digestive system cancers reveals prognostic implication and signaling pathways associated with tumor progression. PMID:34093806
Transcriptomic analysis of caecal tissue in inbred chicken lines that exhibit heritable differences in resistance to Campylobacter jejuni. PMID:34082718
Construction of a novel mRNA-miRNA-lncRNA network and identification of potential regulatory axis associated with prognosis in colorectal cancer liver metastases. PMID:34081622
Genetic basis of variation in cocaine and methamphetamine consumption in outbred populations of Drosophila melanogaster. PMID:34074789
Genome-Wide Identification of Candidate Genes for Milk Production Traits in Korean Holstein Cattle. PMID:34068321
Persistent proteomic changes in glutamatergic and GABAergic signaling in the amygdala of adolescent rats exposed to chlorpyrifos as juveniles. PMID:34058248
Detection of copy number variants in African goats using whole genome sequence data. PMID:34051743
Gene expression profiles of breast cancer metastasis according to organ site. PMID:34051058
Immunity-longevity tradeoff neurally controlled by GABAergic transcription factor PITX1/UNC-30. PMID:34038721
CPA: a web-based platform for consensus pathway analysis and interactive visualization. PMID:34037798
INPP4B promotes PI3Kα-dependent late endosome formation and Wnt/β-catenin signaling in breast cancer. PMID:34035258
LncRNA HBL1 is required for genome-wide PRC2 occupancy and function in cardiogenesis from human pluripotent stem cells. PMID:34027990
Network-based analysis of key regulatory genes implicated in Type 2 Diabetes Mellitus and Recurrent Miscarriages in Turner Syndrome. PMID:34021221
Phosphatidylcholine mediates the crosstalk between LET-607 and DAF-16 stress response pathways. PMID:34014977
Network Pharmacology-Based Strategy for Elucidating the Molecular Basis Forthe Pharmacologic Effects of Licorice (Glycyrrhiza spp.). PMID:33995004
Extracellular microRNAs: key players to explore the outcomes of in vitro fertilization. PMID:33992122
Identification of upregulated NF-κB inhibitor alpha and IRAK3 targeting lncRNA following intracranial aneurysm rupture-induced subarachnoid hemorrhage. PMID:33990177
The SAM domain-containing protein 1 (SAMD1) acts as a repressive chromatin regulator at unmethylated CpG islands. PMID:33980486
Potential role of chimeric genes in pathway-related gene co-expression modules. PMID:33980272
Prediction and analysis of novel key genes ITGAX, LAPTM5, SERPINE1 in clear cell renal cell carcinoma through bioinformatics analysis. PMID:33976979
Overcoming false-positive gene-category enrichment in the analysis of spatially resolved transcriptomic brain atlas data. PMID:33976144
CXCL1 Clone Evolution Induced by the HDAC Inhibitor Belinostat Might Be a Favorable Prognostic Indicator in Triple-Negative Breast Cancer. PMID:33959656
STAM Prolongs Clear Cell Renal Cell Carcinoma Patients' Survival via Inhibiting Cell Growth and Invasion. PMID:33959493
Screening and identification of LMNB1 and DLGAP5, two key biomarkers in gliomas. PMID:33956061
A Semiautomated Paramagnetic Bead-Based Platform for Isobaric Tag Sample Preparation. PMID:33950666
Bacterial Quality, Prevalence of Pathogens, and Molecular Characterization of Biofilm-Producing Staphylococcus aureus from Korean Dairy Farm Environments. PMID:33946614
CBFB cooperates with p53 to maintain TAp73 expression and suppress breast cancer. PMID:33945523
METTL3 mediates bone marrow mesenchymal stem cell adipogenesis to promote chemoresistance in acute myeloid leukaemia. PMID:33932138
MicroRNA Expression Profile Distinguishes Glioblastoma Stem Cells from Differentiated Tumor Cells. PMID:33916317
Investigation and verification of the clinical significance and perspective of natural killer group 2 member D ligands in colon adenocarcinoma. PMID:33909599
Multi-omics integration strategies for animal epigenetic studies - A review. PMID:33902167
Characterisation of PALB2 tumours through whole-exome and whole-transcriptomic analyses. PMID:33893315
Deep sequencing reveals the genomic characteristics of lung adenocarcinoma presenting as ground-glass nodules (GGNs). PMID:33889506
EVA1B to Evaluate the Tumor Immune Microenvironment and Clinical Prognosis in Glioma. PMID:33889156
Genome-wide association and transcriptome studies identify candidate genes and pathways for feed conversion ratio in pigs. PMID:33888058
Single-cell RNA sequencing of mouse islets exposed to proinflammatory cytokines. PMID:33883217
Developmental Transcriptomics Reveals a Gene Network Driving Mimetic Color Variation in a Bumble Bee. PMID:33881508
Weighted gene co expression network analysis (WGCNA) with key pathways and hub-genes related to micro RNAs in ischemic stroke. PMID:33880887
Transcriptomic alterations in malignant pleural mesothelioma cells in response to long‑term treatment with bullfrog sialic acid‑binding lectin. PMID:33880588
BATF Regulates T Regulatory Cell Functional Specification and Fitness of Triglyceride Metabolism in Restraining Allergic Responses. PMID:33879580
Development of a Prognostic Model for Ovarian Cancer Patients Based on Novel Immune Microenvironment Related Genes. PMID:33869044
An Integrative Pharmacology-Based Strategy to Uncover the Mechanism of Xiong-Pi-Fang in Treating Coronary Heart Disease with Depression. PMID:33867976
Is acupuncture effective in the treatment of COVID-19 related symptoms? Based on bioinformatics/network topology strategy. PMID:33866350
In-depth Site-specific Analysis of N-glycoproteome in Human Cerebrospinal Fluid and Glycosylation Landscape Changes in Alzheimer's Disease. PMID:33862227
Identification and Validation of a Tumor Microenvironment-Related Gene Signature for Prognostic Prediction in Advanced-Stage Non-Small-Cell Lung Cancer. PMID:33860055
Comparison of metastatic castration-resistant prostate cancer in bone with other sites: clinical characteristics, molecular features and immune status. PMID:33859877
Disruption of Circadian Transcriptome in Lung by Acute Sleep Deprivation. PMID:33859677
Integrated Genomic and Transcriptomic Analysis reveals key genes for predicting dual-phenotype Hepatocellular Carcinoma Prognosis. PMID:33854600
Prediction of single-cell mechanisms for disease progression in hypertrophic remodelling by a trans-omics approach. PMID:33854108
Genetic diversity in global chicken breeds in relation to their genetic distances to wild populations. PMID:33853523
Identified a disintegrin and metalloproteinase with thrombospondin motifs 6 serve as a novel gastric cancer prognostic biomarker by bioinformatics analysis. PMID:33851708
A cell-to-patient machine learning transfer approach uncovers novel basal-like breast cancer prognostic markers amongst alternative splice variants. PMID:33845831
Comparison of tear proteomic and neuromediator profiles changes between small incision lenticule extraction (SMILE) and femtosecond laser-assisted in-situ keratomileusis (LASIK). PMID:33842006
Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19. PMID:33821262
Traditional Chinese Medicine (TCM) in the treatment of COVID-19 and other viral infections: Efficacies and mechanisms. PMID:33811957
Signaling Pathways Regulated by Silica Nanoparticles. PMID:33807638
A Streamlined Approach to Pathway Analysis from RNA-Sequencing Data. PMID:33802642
Muscle Enriched Lamin Interacting Protein (Mlip) Binds Chromatin and Is Required for Myoblast Differentiation. PMID:33802236
A Systematic Review of Genomic Regions and Candidate Genes Underlying Behavioral Traits in Farmed Mammals and Their Link with Human Disorders. PMID:33800722
ARRDC3 as a Diagnostic and Prognostic Biomarker for Epithelial Ovarian Cancer Based on Data Mining. PMID:33790626
Stress-induced transcriptional memory accelerates promoter-proximal pause release and decelerates termination over mitotic divisions. PMID:33784494
Identification and Analysis of Potential Key Genes Associated With Hepatocellular Carcinoma Based on Integrated Bioinformatics Methods. PMID:33767726
Distribution of microRNA profiles in pre-clinical and clinical forms of murine and human prion disease. PMID:33767334
Elevated glucose represses lysosomal and mTOR-related genes in renal epithelial cells composed of progenitor CD133+ cells. PMID:33764985
Bi-allelic variants in HOPS complex subunit VPS41 cause cerebellar ataxia and abnormal membrane trafficking. PMID:33764426
ω-3PUFA supplementation ameliorates adipose tissue inflammation and insulin-stimulated glucose disposal in subjects with obesity: a potential role for apolipoprotein E. PMID:33753887
SPAAC-NAD-seq, a sensitive and accurate method to profile NAD+-capped transcripts. PMID:33753511
C3AR1 mRNA as a Potential Therapeutic Target Associates With Clinical Outcomes and Tumor Microenvironment in Osteosarcoma. PMID:33748161
Quantitative proteome profiling stratifies fibroepithelial lesions of the breast. PMID:33747363
Identification of key genes and pathways in scleral extracellular matrix remodeling in glaucoma: Potential therapeutic agents discovered using bioinformatics analysis. PMID:33746571
A network pharmacology-based investigation on the bioactive ingredients and molecular mechanisms of Gelsemium elegans Benth against colorectal cancer. PMID:33743701
Immune microenvironment characterisation and dynamics during anti-HER2-based neoadjuvant treatment in HER2-positive breast cancer. PMID:33742063
Overlapping and non-overlapping roles of the class-I histone deacetylase-1 corepressors LET-418, SIN-3, and SPR-1 in Caenorhabditis elegans embryonic development. PMID:33740234
H3K27ac bookmarking promotes rapid post-mitotic activation of the pluripotent stem cell program without impacting 3D chromatin reorganization. PMID:33730542
Mapping specificity, cleavage entropy, allosteric changes and substrates of blood proteases in a high-throughput screen. PMID:33727531
Global Transcriptomic Analyses Reveal Genes Involved in Conceptus Development During the Implantation Stages in Pigs. PMID:33719331
Single-Cell RNA Sequencing and Quantitative Proteomics Analysis Elucidate Marker Genes and Molecular Mechanisms in Hypoplastic Left Heart Patients With Heart Failure. PMID:33718359
Identification of the hub genes in gastric cancer through weighted gene co-expression network analysis. PMID:33717664
Identification of Core Genes Related to Progression and Prognosis of Hepatocellular Carcinoma and Small-Molecule Drug Predication. PMID:33708237
A plug and play microfluidic platform for standardized sensitive low-input chromatin immunoprecipitation. PMID:33707229
Calcium-binding and coiled-coil domain 2 promotes the proliferation and suppresses apoptosis of prostate cancer cells. PMID:33692836
Changes in protein expression due to metformin treatment and hyperinsulinemia in a human endometrial cancer cell line. PMID:33690729
Integrated Bioinformatics Analysis Exhibits Pivotal Exercise-Induced Genes and Corresponding Pathways in Malignant Melanoma. PMID:33679872
Integrative pan cancer analysis reveals epigenomic variation in cancer type and cell specific chromatin domains. PMID:33658503
Rapid Multiplexed Reduced Representation Bisulfite Sequencing Library Prep (rRRBS). PMID:33654977
Recursive ensemble feature selection provides a robust mRNA expression signature for myalgic encephalomyelitis/chronic fatigue syndrome. PMID:33633136
Identification of UBE2C as hub gene in driving prostate cancer by integrated bioinformatics analysis. PMID:33630978
Global Gene Expression of Cultured Human Dermal Fibroblasts: Focus on Cell Cycle and Proliferation Status in Improving the Condition of Face Skin. PMID:33628110
Identification and Characterisation of Putative Enhancer Elements in Mouse Embryonic Stem Cells. PMID:33623376
Identification of glycolysis related pathways in pancreatic adenocarcinoma and liver hepatocellular carcinoma based on TCGA and GEO datasets. PMID:33607990
Identification of four genes and biological characteristics of esophageal squamous cell carcinoma by integrated bioinformatics analysis. PMID:33602210
Identification of HCG18 and MCM3AP-AS1 That Associate With Bone Metastasis, Poor Prognosis and Increased Abundance of M2 Macrophage Infiltration in Prostate Cancer. PMID:33596783
Characterising cancer-associated fibroblast heterogeneity in non-small cell lung cancer: a systematic review and meta-analysis. PMID:33580106
Age and Tumor Differentiation-Associated Gene Expression Based Analysis of Non-Familial Prostate Cancers. PMID:33575208
The role of striated muscle Pik3r1 in glucose and protein metabolism following chronic glucocorticoid exposure. PMID:33567340
Microarray Data Mining and Preliminary Bioinformatics Analysis of Hepatitis D Virus-Associated Hepatocellular Carcinoma. PMID:33564675
Integrative Identification of Hub Genes Associated With Immune Cells in Atrial Fibrillation Using Weighted Gene Correlation Network Analysis. PMID:33553270
A Novel mRNA-miRNA Regulatory Sub-Network Associated With Prognosis of Metastatic Clear Cell Renal Cell Carcinoma. PMID:33542901
Enrichment of Neurodegenerative Microglia Signature in Brain-Derived Extracellular Vesicles Isolated from Alzheimer's Disease Mouse Models. PMID:33534581
Identification of novel biomarkers and candidate small-molecule drugs in cutaneous melanoma by comprehensive gene microarrays analysis. PMID:33531976
Identification of key miRNA-gene pairs in gastric cancer through integrated analysis of mRNA and miRNA microarray. PMID:33527022
Exploring the Active Components of Simotang Oral Liquid and Their Potential Mechanism of Action on Gastrointestinal Disorders by Integrating Ultrahigh-Pressure Liquid Chromatography Coupled with Linear Ion Trap-Orbitrap Analysis and Network Pharmacology. PMID:33521474
Genome-Wide Association Study of Maize Aboveground Dry Matter Accumulation at Seedling Stage. PMID:33519889
PDX1LOW MAFALOW β-cells contribute to islet function and insulin release. PMID:33514698
Comprehensive Analysis of ceRNA Regulation Network Involved in the Development of Coronary Artery Disease. PMID:33511207
Construction of a TF-miRNA-gene feed-forward loop network predicts biomarkers and potential drugs for myasthenia gravis. PMID:33510225
Structural similarity-based prediction of host factors associated with SARS-CoV-2 infection and pathogenesis. PMID:33506741
A novel similarity score based on gene ranks to reveal genetic relationships among diseases. PMID:33505797
JAK-STAT Pathway Inhibition Partially Restores Intestinal Homeostasis in Hdac1- and Hdac2-Intestinal Epithelial Cell-Deficient Mice. PMID:33498747
A Systems View of the Heparan Sulfate Interactome. PMID:33494649
Discovery and function exploration of microRNA-155 as a molecular biomarker for early detection of breast cancer. PMID:33475963
Identification of PARP-7 substrates reveals a role for MARylation in microtubule control in ovarian cancer cells. PMID:33475085
HDAC inhibition results in widespread alteration of the histone acetylation landscape and BRD4 targeting to gene bodies. PMID:33472068
Deciphering the miRNA transcriptome of breast muscle from the embryonic to post-hatching periods in chickens. PMID:33468053
Comparison of Growth Performance and Meat Quality Traits of Commercial Cross-Bred Pigs versus the Large Black Pig Breed. PMID:33467586
GATA3 somatic mutations are associated with clinicopathological features and expression profile in TCGA breast cancer patients. PMID:33462316
Smad3 deficiency promotes beta cell proliferation and function in db/db mice via restoring Pax6 expression. PMID:33456576
Exploring the treatment of COVID-19 with Yinqiao powder based on network pharmacology. PMID:33452734
Investigating the role of dachshund b in the development of the pancreatic islet in zebrafish. PMID:33449448
Multiplex gene and phenotype network to characterize shared genetic pathways of epilepsy and autism. PMID:33441621
circRNA expression pattern and ceRNA network in the pathogenesis of aseptic loosening after total hip arthroplasty. PMID:33437212
Quantitative trait loci and transcriptome signatures associated with avian heritable resistance to Campylobacter. PMID:33436657
The Identification of a Novel Fucosidosis-Associated FUCA1 Mutation: A Case of a 5-Year-Old Polish Girl with Two Additional Rare Chromosomal Aberrations and Affected DNA Methylation Patterns. PMID:33435586
A review of computational drug repositioning: strategies, approaches, opportunities, challenges, and directions. PMID:33431024
Microarray expression profile of mRNAs and long noncoding RNAs and the potential role of PFK-1 in infantile hemangioma. PMID:33430906
Proteomic analysis of platelet-rich and platelet-poor plasma. PMID:33426223
RNA-Seq Whole Transcriptome Analysis of Bovine Mammary Epithelial Cells in Response to Intracellular Staphylococcus aureus. PMID:33426011
Prognostic gene expression signatures of breast cancer are lacking a sensible biological meaning. PMID:33420139
MicroRNA‑34a‑5p expression in the plasma and in its extracellular vesicle fractions in subjects with Parkinson's disease: An exploratory study. PMID:33416118
Sparsely-connected autoencoder (SCA) for single cell RNAseq data mining. PMID:33402683
Identification and validation of an immune-related gene signature predictive of overall survival in colon cancer. PMID:33401247
Restoration of type I interferon signaling in intrahepatically primed CD8+ T cells promotes functional differentiation. PMID:33400688
Human Pumilio proteins directly bind the CCR4-NOT deadenylase complex to regulate the transcriptome. PMID:33397688
Identifying Biomarkers to Predict the Progression and Prognosis of Breast Cancer by Weighted Gene Co-expression Network Analysis. PMID:33391348
Global Lysine Acetylation and 2-Hydroxyisobutyrylation Profiling Reveals the Metabolism Conversion Mechanism in Giardia lamblia. PMID:33376196
Development of an immune-related prognostic index associated with osteosarcoma. PMID:33371790
Differential effects of RASA3 mutations on hematopoiesis are profoundly influenced by genetic background and molecular variant. PMID:33370780
The role of the MAD2-TLR4-MyD88 axis in paclitaxel resistance in ovarian cancer. PMID:33370338
m5C RNA Methylation Primarily Affects the ErbB and PI3K-Akt Signaling Pathways in Gastrointestinal Cancer. PMID:33365328
Phosphatase and Tensin Homolog Mutation in Immune Cell Infiltration and Clinicopathological Features of Low-Grade Gliomas. PMID:33363203
miR-21 is upregulated, promoting fibrosis and blocking G2/M in irradiated rat cardiac fibroblasts. PMID:33354435
Ubiquitin-Like Modifier Activating Enzyme 1 as a Novel Diagnostic and Prognostic Indicator That Correlates With Ferroptosis and the Malignant Phenotypes of Liver Cancer Cells. PMID:33344241
Key Modules and Hub Genes Identified by Coexpression Network Analysis for Revealing Novel Biomarkers for Spina Bifida. PMID:33343629
Key pathways in prostate cancer with SPOP mutation identified by bioinformatic analysis. PMID:33336059
Direct and Indirect Regulators of Epithelial-Mesenchymal Transition-Mediated Immunosuppression in Breast Carcinomas. PMID:33328216
Metabolomic and Transcriptomic Analysis of MCF-7 Cells Exposed to 23 Chemicals at Human-Relevant Levels: Estimation of Individual Chemical Contribution to Effects. PMID:33325755
Computational Prediction of Antiangiogenesis Synergistic Mechanisms of Total Saponins of Panax japonicus Against Rheumatoid Arthritis. PMID:33324204
Identification of potential circRNAs and circRNA-miRNA-mRNA regulatory network in the development of diabetic foot ulcers by integrated bioinformatics analysis. PMID:33314661
Extracellular signal-regulated kinase (ERK) pathway control of CD8+ T cell differentiation. PMID:33305809
MiR-218 affects hypertrophic differentiation of human mesenchymal stromal cells during chondrogenesis via targeting RUNX2, MEF2C, and COL10A1. PMID:33303006
Prognostic value of Glypican family genes in early-stage pancreatic ductal adenocarcinoma after pancreaticoduodenectomy and possible mechanisms. PMID:33302876
Characterization of mRNA Profiles of Exosomes from Diverse Forms of M2 Macrophages. PMID:33299857
Identifying Key MicroRNAs Targeted by Narenmandula in a Rodent Nephropathy Model. PMID:33299464
Co-expression network analysis of protein phosphatase 2A (PP2A) genes with stress-responsive genes in Arabidopsis thaliana reveals 13 key regulators. PMID:33293553
Effect of Intrauterine Smoke Exposure on microRNA-15a Expression in Human Lung Development and Subsequent Asthma Risk. PMID:33291534
Fifteen Years of Gene Set Analysis for High-Throughput Genomic Data: A Review of Statistical Approaches and Future Challenges. PMID:33286201
G9a/GLP-sensitivity of H3K9me2 Demarcates Two Types of Genomic Compartments. PMID:33285284
Chronic circadian shift leads to adipose tissue inflammation and fibrosis. PMID:33285245
TTK, CDC25A, and ESPL1 as Prognostic Biomarkers for Endometrial Cancer. PMID:33282948
Differentially Expressed mRNAs and Their Long Noncoding RNA Regulatory Network with Helicobacter pylori-Associated Diseases including Atrophic Gastritis and Gastric Cancer. PMID:33282942
Identifying MMP14 and COL12A1 as a potential combination of prognostic biomarkers in pancreatic ductal adenocarcinoma using integrated bioinformatics analysis. PMID:33282565
miR-224, miR-147b and miR-31 associated with lymph node metastasis and prognosis for lung adenocarcinoma by regulating PRPF4B, WDR82 or NR3C2. PMID:33282547
Tumor-promoting macrophages prevail in malignant ascites of advanced gastric cancer. PMID:33277616
Investigation of the miRNA and mRNA Coexpression Network and Their Prognostic Value in Hepatocellular Carcinoma. PMID:33274225
Response to iron overload in cultured hepatocytes. PMID:33273573
SITC cancer immunotherapy resource document: a compass in the land of biomarker discovery. PMID:33268350
Genome-Wide Analysis of Nubian Ibex Reveals Candidate Positively Selected Genes That Contribute to Its Adaptation to the Desert Environment. PMID:33266380
HAHmiR.DB: a server platform for high-altitude human miRNA-gene coregulatory networks and associated regulatory circuits. PMID:33259604
Manganese Depletion Leads to Multisystem Changes in the Transcriptome of the Opportunistic Pathogen Streptococcus sanguinis. PMID:33250881
Investigating the human protein-host protein interactome of SARS-CoV-2 infection in the small intestine. PMID:33244381
DNA methylation during human adipogenesis and the impact of fructose. PMID:33243154
Polyphyllin VII suppresses cell proliferation, the cell cycle and cell migration in colorectal cancer. PMID:33240431
Identifying a Potential Key Gene, TIMP1, Associated with Liver Metastases of Uveal Melanoma by Weight Gene Co-Expression Network Analysis. PMID:33239893
Site-Specific Phosphorylation of Histone H1.4 Is Associated with Transcription Activation. PMID:33238524
Uncovering the pharmacological mechanism of the effects of the Banxia-Xiakucao Chinese Herb Pair on sleep disorder by a systems pharmacology approach. PMID:33235305
HLH-11 modulates lipid metabolism in response to nutrient availability. PMID:33235199
CD74, a novel predictor for bronchopulmonary dysplasia in preterm infants. PMID:33235138
Identification of Crucial lncRNAs, miRNAs, mRNAs, and Potential Therapeutic Compounds for Polycystic Ovary Syndrome by Bioinformatics Analysis. PMID:33224973
Genomic alterations of whole exome sequencing in esophageal squamous cell carcinoma before and after radiotherapy. PMID:33209427
Global analysis of RNA-binding protein dynamics by comparative and enhanced RNA interactome capture. PMID:33208978
Silencing KIF14 reverses acquired resistance to sorafenib in hepatocellular carcinoma. PMID:33203790
In silico and in vitro studies reveal complement system drives coagulation cascade in SARS-CoV-2 pathogenesis. PMID:33200027
Integrated network pharmacology and molecular docking approaches to reveal the synergistic mechanism of multiple components in Venenum Bufonis for ameliorating heart failure. PMID:33194384
Identification of lncRNA-NR_104160 as a biomarker and construction of a lncRNA-related ceRNA network for essential hypertension. PMID:33194014
Mechanisms of Core Chinese Herbs against Colorectal Cancer: A Study Based on Data Mining and Network Pharmacology. PMID:33193800
Transcriptome Analyses of β-Thalassemia -28(A>G) Mutation Using Isogenic Cell Models Generated by CRISPR/Cas9 and Asymmetric Single-Stranded Oligodeoxynucleotides (assODNs). PMID:33193694
Identification of RNA Transcript Makers Associated With Prognosis of Kidney Renal Clear Cell Carcinoma by a Competing Endogenous RNA Network Analysis. PMID:33193613
Identification of immune-related genes as prognostic factors in bladder cancer. PMID:33184436
ID1 As a Prognostic Biomarker and Promising Drug Target Plays a Pivotal Role in Deterioration of Clear Cell Renal Cell Carcinoma. PMID:33178820
Bioinformatic Analysis Identifies Potential Key Genes in the Pathogenesis of Melanoma. PMID:33178610
Transcriptomics and Prognosis Analysis to Identify Critical Biomarkers in Invasive Breast Carcinoma. PMID:33176622
Interactome analysis of gene expression profiles identifies CDC6 as a potential therapeutic target modified by miR-215-5p in hepatocellular carcinoma. PMID:33173413
Transcriptomic and Epigenetic Preservation of Genetic Sex Identity in Estrogen-feminized Male Chicken Embryonic Gonads. PMID:33170207
Combining bioinformatics techniques to explore the molecular mechanisms involved in pancreatic cancer metastasis and prognosis. PMID:33164330
SOX2 promotes resistance of melanoma with PD-L1 high expression to T-cell-mediated cytotoxicity that can be reversed by SAHA. PMID:33158915
Global gene network exploration based on explainable artificial intelligence approach. PMID:33156825
Argonaut: A Web Platform for Collaborative Multi-omic Data Visualization and Exploration. PMID:33154995
Characterization of transcriptional response of Lactobacillus plantarum under acidic conditions provides insight into bacterial adaptation in fermentative environments. PMID:33154427
Sex-dependent effects of preconception exposure to arsenite on gene transcription in parental germ cells and on transcriptomic profiles and diabetic phenotype of offspring. PMID:33145626
H4K20me3 methyltransferase SUV420H2 shapes the chromatin landscape of pluripotent embryonic stem cells. PMID:33144397
Human Gene Functional Network-Informed Prediction of HIV-1 Host Dependency Factors. PMID:33144314
Integrative Analysis of DNA Methylation Identified 12 Signature Genes Specific to Metastatic ccRCC. PMID:33134164
Lower expression of LINC00092 in lung adenocarcinoma might mean poorer prognosis: A study based on data mining and bioinformatics. PMID:33126385
An Integrative Serum Pharmacology-Based Approach to Study the Anti-Tumor Activity of B. paniculatum Aqueous Bulb Extract on the Human Hepatocellular Carcinoma Cell Line BEL-7404. PMID:33123002
Functional in vivo and in vitro effects of 20q11.21 genetic aberrations on hPSC differentiation. PMID:33122739
Transcriptome Reveals Multi Pigmentation Genes Affecting Dorsoventral Pattern in Avian Body. PMID:33117797
Identification and Validation of Novel Genes in Anaplastic Thyroid Carcinoma via Bioinformatics Analysis. PMID:33116838
Chromatin Looping Shapes KLF5-Dependent Transcriptional Programs in Human Epithelial Cancers. PMID:33115806
Dynamic metabolic reprogramming in dendritic cells: An early response to influenza infection that is essential for effector function. PMID:33104753
Amino Sugars Reshape Interactions between Streptococcus mutans and Streptococcus gordonii. PMID:33097515
Genomic signatures of globally enhanced gene duplicate accumulation in the megadiverse higher Diptera fueling intralocus sexual conflict resolution. PMID:33083121
A Network Pharmacology Technique to Investigate the Synergistic Mechanisms of Salvia miltiorrhiza and Radix puerariae in Treatment of Cardio-Cerebral Vascular Diseases. PMID:33082828
Integrative Analysis of Regulatory Module Reveals Associations of Microgravity with Dysfunctions of Multi-body Systems and Tumorigenesis. PMID:33066530
The Perspective of Diagnostic and Prognostic Values of Lipoxygenases mRNA Expression in Colon Adenocarcinoma. PMID:33061426
Biomarker exploration of microRNA-203 as a promising substrate for predicting poor survival outcome in colorectal cancer. PMID:33059609
A MicroRNA Expression Signature as Prognostic Marker for Oropharyngeal Squamous Cell Carcinoma. PMID:33057626
CRISPR screening of porcine sgRNA library identifies host factors associated with Japanese encephalitis virus replication. PMID:33057066
LncSEA: a platform for long non-coding RNA related sets and enrichment analysis. PMID:33045741
Identification and validation of the prognostic value of immune-related genes in non-small cell lung cancer. PMID:33042464
Intracellular calcium current disorder and disease phenotype in OBSCN mutant iPSC-based cardiomyocytes in arrhythmogenic right ventricular cardiomyopathy. PMID:33042279
A prognostic gene expression signature for oropharyngeal squamous cell carcinoma. PMID:33038770
Machine learning techniques for sequence-based prediction of viral-host interactions between SARS-CoV-2 and human proteins. PMID:33036956
Development and validation of a metastasis-related Gene Signature for predicting the Overall Survival in patients with Pancreatic Ductal Adenocarcinoma. PMID:33033514
Graph-based exploitation of gene ontology using GOxploreR for scrutinizing biological significance. PMID:33028846
Uncovering the protective mechanism of Taohong Siwu decoction against diabetic retinopathy via HIF-1 signaling pathway based on network analysis and experimental validation. PMID:33023593
Identification of a Prognostic Model Based on Immune-Related Genes of Lung Squamous Cell Carcinoma. PMID:33014809
Systematically Exploring the Antitumor Mechanisms of Core Chinese Herbs on Hepatocellular Carcinoma: A Computational Study. PMID:33014099
Comparing the effects of two different strains of mycobacteria, Mycobacterium vaccae NCTC 11659 and M. vaccae ATCC 15483, on stress-resilient behaviors and lipid-immune signaling in rats. PMID:33011306
Prognostic value of immune related genes in lung adenocarcinoma. PMID:32989393
Population Genomics Reveals Incipient Speciation, Introgression, and Adaptation in the African Mona Monkey (Cercopithecus mona). PMID:32986826
Systemic Expression Analysis Reveals Prognostic Significance of WIPI3 in Hepatocellular Carcinoma. PMID:32973867
Existence and possible roles of independent non-CpG methylation in the mammalian brain. PMID:32970817
Identification of potential specific biomarkers and key signaling pathways between osteogenic and adipogenic differentiation of hBMSCs for osteoporosis therapy. PMID:32967719
Identification of hub genes associated with esophageal cancer progression using bioinformatics analysis. PMID:32963620
Transcriptional Expressions of CXCL9/10/12/13 as Prognosis Factors in Breast Cancer. PMID:32963527
Review on the Computational Genome Annotation of Sequences Obtained by Next-Generation Sequencing. PMID:32962098
Coexpression Network Analysis Identifies a Novel Nine-RNA Signature to Improve Prognostic Prediction for Prostate Cancer Patients. PMID:32953881
Systems pharmacology-based approach to investigate the mechanisms of Danggui-Shaoyao-san prescription for treatment of Alzheimer's disease. PMID:32948180
A network pharmacology study on analgesic mechanism of Yuanhu-Baizhi herb pair. PMID:32948176
Overexpression of novel long intergenic non‑coding RNA LINC02454 is associated with a poor prognosis in papillary thyroid cancer. PMID:32945494
The critical role of BAP1 mutation in the prognosis and treatment selection of kidney renal clear cell carcinoma. PMID:32944533
miRTissue ce: extending miRTissue web service with the analysis of ceRNA-ceRNA interactions. PMID:32938402
Identification and verification of three key genes associated with survival and prognosis of COAD patients via integrated bioinformatics analysis. PMID:32936304
Identification of genes and pathways associated with subchondral bone in osteoarthritis via bioinformatic analysis. PMID:32925767
Improving Model Performance on the Stratification of Breast Cancer Patients by Integrating Multiscale Genomic Features. PMID:32908867
Construction of circRNA-Associated ceRNA Network Reveals Novel Biomarkers for Esophageal Cancer. PMID:32908582
Circulation of gut-preactivated naïve CD8+ T cells enhances antitumor immunity in B cell-defective mice. PMID:32907933
Short-Term Mild Temperature-Stress-Induced Alterations in the C. elegans Phosphoproteome. PMID:32899194
Three-dimensional facial-image analysis to predict heterogeneity of the human ageing rate and the impact of lifestyle. PMID:32895578
Identification of Pathways Associated with Placental Adaptation to Maternal Nutrient Restriction in Sheep. PMID:32887397
Essential amino acid supplementation alters the p53 transcriptional response and cytokine gene expression following total knee arthroplasty. PMID:32881622
Integrative genomics analysis of various omics data and networks identify risk genes and variants vulnerable to childhood-onset asthma. PMID:32867763
Tumor Suppressor Role of hsa-miR-193a-3p and -5p in Cutaneous Melanoma. PMID:32867069
Analysis of circulating-microRNA expression in lactating Holstein cows under summer heat stress. PMID:32866172
Comprehensive analysis of a long non-coding RNA-associated competing endogenous RNA network in glioma. PMID:32863896
Integrated Genome-Wide Methylation and Expression Analyses Reveal Key Regulators in Osteosarcoma. PMID:32855654
Proteomic Profiling of Extracellular Vesicles Derived from Cerebrospinal Fluid of Alzheimer's Disease Patients: A Pilot Study. PMID:32854315
A cross-kingdom conserved ER-phagy receptor maintains endoplasmic reticulum homeostasis during stress. PMID:32851973
A Bioinformatics Research on Novel Mechanism of Compound Kushen Injection for Treating Breast Cancer by Network Pharmacology and Molecular Docking Verification. PMID:32849897
Brain Transcriptomics of Wild and Domestic Rabbits Suggests That Changes in Dopamine Signaling and Ciliary Function Contributed to Evolution of Tameness. PMID:32835359
Identification and verification of the prognostic value of the glutathione S-transferase Mu genes in gastric cancer. PMID:32831919
Generation and characterization of keap1a- and keap1b-knockout zebrafish. PMID:32828016
Integrated Phytochemical Analysis Based on UPLC-MS and Network Pharmacology Approaches to Explore the Quality Control Markers for the Quality Assessment of Trifolium pratense L. PMID:32825325
Interactome of miRNAs and transcriptome of human umbilical cord endothelial cells exposed to short-term simulated microgravity. PMID:32821776
Identification of Critical Pathways and Hub Genes in LanCL1-Overexpressed Prostate Cancer Cells. PMID:32821124
Seven immune-related genes prognostic power and correlation with tumor-infiltrating immune cells in hepatocellular carcinoma. PMID:32815653
Age-induced accumulation of methylmalonic acid promotes tumour progression. PMID:32814897
RNA-Seq reveals placental growth factor regulates the human retinal endothelial cell barrier integrity by transforming growth factor (TGF-β) signaling. PMID:32813141
The current landscape of coronavirus-host protein-protein interactions. PMID:32811513
Identification and Validation of an Energy Metabolism-Related lncRNA-mRNA Signature for Lower-Grade Glioma. PMID:32802843
Transcript Profiles of Stria Vascularis in Models of Waardenburg Syndrome. PMID:32802035
miR-16 integrates signal pathways in myofibroblasts: determinant of cell fate necessary for fibrosis resolution. PMID:32801294
Genome-Wide Profiling of Alternative Splicing Signature Reveals Prognostic Predictor for Esophageal Carcinoma. PMID:32793288
Discovery of Selenocysteine as a Potential Nanomedicine Promotes Cartilage Regeneration With Enhanced Immune Response by Text Mining and Biomedical Databases. PMID:32792959
Novel variants in women with premature ovarian function decline identified via whole-exome sequencing. PMID:32789750
MiR-93/miR-375: Diagnostic Potential, Aggressiveness Correlation and Common Target Genes in Prostate Cancer. PMID:32784653
Atonal bHLH transcription factor 1 is an important factor for maintaining the balance of cell proliferation and differentiation in tumorigenesis. PMID:32782577
Investigation of the association between C-X-C motif chemokine receptor subunits and tumor infiltration levels and prognosis in patients with early-stage pancreatic ductal adenocarcinoma. PMID:32774489
Role of CYP4F2 as a novel biomarker regulating malignant phenotypes of liver cancer cells via the Nrf2 signaling axis. PMID:32774486
Network Pharmacology Analysis and Experiments Validation of the Inhibitory Effect of JianPi Fu Recipe on Colorectal Cancer LoVo Cells Metastasis and Growth. PMID:32774415
Identification of Immune-Related Genes Contributing to the Development of Glioblastoma Using Weighted Gene Co-expression Network Analysis. PMID:32765489
AMPK Enhances Transcription of Selected Nrf2 Target Genes via Negative Regulation of Bach1. PMID:32760724
The Dysregulation and Prognostic Analysis of STRIPAK Complex Across Cancers. PMID:32754603
DNA Methylation Clocks and Their Predictive Capacity for Aging Phenotypes and Healthspan. PMID:32743556
Ferroptosis-Related Gene Signature Predicts Glioma Cell Death and Glioma Patient Progression. PMID:32733879
Human Respiratory Syncytial Virus-Induced Immune Signature of Infection Revealed by Transcriptome Analysis of Clinical Pediatric Nasopharyngeal Swab Samples. PMID:32726438
Flubendazole elicits anti-cancer effects via targeting EVA1A-modulated autophagy and apoptosis in Triple-negative Breast Cancer. PMID:32724459
A Network Pharmacology Approach to Investigate the Active Compounds and Mechanisms of Musk for Ischemic Stroke. PMID:32714405
MicroRNA and protein-coding gene expression analysis in idiopathic pulmonary fibrosis yields novel biomarker signatures associated to survival. PMID:32711186
Genes associated with survival of female bovine blastocysts produced in vivo. PMID:32710275
Deciphering the mode of action and position of genetic variants impacting on egg number in broiler breeders. PMID:32709222
Kinase Interaction Network Expands Functional and Disease Roles of Human Kinases. PMID:32707033
Identification of potential molecular mechanisms and small molecule drugs in myocardial ischemia/reperfusion injury. PMID:32696819
Identification of a three-long noncoding RNA prognostic model involved competitive endogenous RNA in kidney renal clear cell carcinoma. PMID:32694941
Identification and validation of novel DNA methylation markers for early diagnosis of lung adenocarcinoma. PMID:32688456
Injection of seminal fluid into the hemocoel of honey bee queens (Apis mellifera) can stimulate post-mating changes. PMID:32686702
Large-scale site-specific mapping of the O-GalNAc glycoproteome. PMID:32681153
Multi-layered proteomic analyses decode compositional and functional effects of cancer mutations on kinase complexes. PMID:32678104
Natural Selection on Exonic SNPs Shapes Allelic Expression Imbalance (AEI) Adaptability in Lung Cancer Progression. PMID:32670357
Identification of candidate biomarkers and pathways associated with psoriasis using bioinformatics analysis. PMID:32669126
Ribosome Recycling by ABCE1 Links Lysosomal Function and Iron Homeostasis to 3' UTR-Directed Regulation and Nonsense-Mediated Decay. PMID:32668236
Circulating MicroRNA Expression Profiles in Patients with Stable and Unstable Angina. PMID:32667489
Identification of Target Genes in Hypertension and Left Ventricular Remodeling. PMID:32664164
A bioinformatics investigation into molecular mechanism of Yinzhihuang granules for treating hepatitis B by network pharmacology and molecular docking verification. PMID:32651427
SLC7A2 serves as a potential biomarker and therapeutic target for ovarian cancer. PMID:32647070
Identification of key genes for esophageal squamous cell carcinoma via integrated bioinformatics analysis and experimental confirmation. PMID:32642240
Bioinformatics analysis of high-throughput data to validate potential novel biomarkers and small molecule drugs for glioblastoma multiforme. PMID:32634050
Transformation of Mature Osteoblasts into Bone Lining Cells and RNA Sequencing-Based Transcriptome Profiling of Mouse Bone during Mechanical Unloading. PMID:32615730
Identification of Key Differentially Expressed Transcription Factors in Glioblastoma. PMID:32612655
Weighted gene co-expression network analysis to define pivotal modules and genes in diabetic heart failure. PMID:32602534
Mechanistic insights on the mode of action of an antiproliferative thiosemicarbazone-nickel complex revealed by an integrated chemogenomic profiling study. PMID:32601343
Identification of four hub genes as promising biomarkers to evaluate the prognosis of ovarian cancer in silico. PMID:32595417
SuccSite: Incorporating Amino Acid Composition and Informative k-spaced Amino Acid Pairs to Identify Protein Succinylation Sites. PMID:32592791
Systematic summarization of the expression profiles and prognostic roles of the dishevelled gene family in hepatocellular carcinoma. PMID:32588988
Proteome Analysis Reveals Syndecan 1 Regulates Porcine Sapelovirus Replication. PMID:32575635
PPARγ: the dominant regulator among PPARs in dry eye lacrimal gland and diabetic lacrimal gland. PMID:32566495
Two Thalamic Regions Screened Using Laser Capture Microdissection with Whole Human Genome Microarray in Schizophrenia Postmortem Samples. PMID:32566292
Chemoresistance-associated alternative splicing signatures in serous ovarian cancer. PMID:32565967
Blood Serum Stimulates p38-Mediated Proliferation and Changes in Global Gene Expression of Adult Human Cardiac Stem Cells. PMID:32560212
Fermentable fiber-induced hepatocellular carcinoma in mice recapitulates gene signatures found in human liver cancer. PMID:32559205
Identification of DEGs and transcription factors involved in H. pylori-associated inflammation and their relevance with gastric cancer. PMID:32547867
Identification of Pannexin 2 as a Novel Marker Correlating with Ferroptosis and Malignant Phenotypes of Prostate Cancer Cells. PMID:32547072
A 5-Gene Stemness Score for Rapid Determination of Risk in Multiple Myeloma. PMID:32547066
Identification of candidate aberrantly methylated and differentially expressed genes in Esophageal squamous cell carcinoma. PMID:32546690
Ribosomal protein S11 influences glioma response to TOP2 poisons. PMID:32528131
The Mutant p53-Driven Secretome Has Oncogenic Functions in Pancreatic Ductal Adenocarcinoma Cells. PMID:32526853
Proteome characteristics of liver tissue from patients with parenteral nutrition-associated liver disease. PMID:32518576
Analysis of Thyroid Hormone Receptor α-Knockout Tadpoles Reveals That the Activation of Cell Cycle Program Is Involved in Thyroid Hormone-Induced Larval Epithelial Cell Death and Adult Intestinal Stem Cell Development During Xenopus tropicalis Metamorphosis. PMID:32515287
Bioinformatic analysis and experimental identification of blood biomarkers for chronic nonunion. PMID:32503597
Systems Genetics for Mechanistic Discovery in Heart Diseases. PMID:32496909
Biomarker roles identification of miR-106 family for predicting the risk and poor survival of colorectal cancer. PMID:32493303
Longitudinal Analysis of Gene Expression Changes During Cervical Carcinogenesis Reveals Potential Therapeutic Targets. PMID:32489245
SCDb: an integrated database of stomach cancer. PMID:32487193
Prevention of age-associated neuronal hyperexcitability with improved learning and attention upon knockout or antagonism of LPAR2. PMID:32468095
Identification of potential crucial genes and molecular mechanisms in glioblastoma multiforme by bioinformatics analysis. PMID:32467990
MyomirDB: A unified database and server platform for muscle atrophy myomiRs, coregulatory networks and regulons. PMID:32451429
Identification of crucial genes correlated with esophageal cancer by integrated high-throughput data analysis. PMID:32443386
Development of a novel prognostic signature for predicting the overall survival of bladder cancer patients. PMID:32441304
MCM2 and NUSAP1 Are Potential Biomarkers for the Diagnosis and Prognosis of Pancreatic Cancer. PMID:32420375
Epigenome-Wide Tobacco-Related Methylation Signature Identification and Their Multilevel Regulatory Network Inference for Lung Adenocarcinoma. PMID:32420331
Comprehensive analysis of competing endogenous RNA network in Wilms tumor based on the TARGET database. PMID:32420153
Identification of a Gene-Related Risk Signature in Melanoma Patients Using Bioinformatic Profiling. PMID:32411243
Prognostic implication and functional exploration for microRNA-20a as a molecular biomarker of gastrointestinal cancer. PMID:32410584
The transcriptional regulator ZNF398 mediates pluripotency and epithelial character downstream of TGF-beta in human PSCs. PMID:32398665
Nine hub genes related to the prognosis of HBV-positive hepatocellular carcinoma identified by protein interaction analysis. PMID:32395522
MicroRNA regulatory pattern in spinal cord ischemia-reperfusion injury. PMID:32394971
Yeast-Based Genetic Interaction Analysis of Human Kinome. PMID:32392905
Systematic Elucidation of the Potential Mechanisms of Core Chinese Materia Medicas in Treating Liver Cancer Based on Network Pharmacology. PMID:32382293
Discovery of genes and proteins possibly regulating mean wool fibre diameter using cDNA microarray and proteomic approaches. PMID:32382132
Expression profiling and analysis of some miRNAs in subcutaneous white adipose tissue during development of obesity. PMID:32366215
Cholesterol Regulates Innate Immunity via Nuclear Hormone Receptor NHR-8. PMID:32361270
Chemical composition and pharmacological mechanism of Qingfei Paidu Decoction and Ma Xing Shi Gan Decoction against Coronavirus Disease 2019 (COVID-19): In silico and experimental study. PMID:32360484
Identification of TP53 mutation associated-immunotype and prediction of survival in patients with hepatocellular carcinoma. PMID:32355765
Screening Circular RNAs Related to Acquired Gefitinib Resistance in Non-small Cell Lung Cancer Cell Lines. PMID:32328186
Bioinformatics Methods for Mass Spectrometry-Based Proteomics Data Analysis. PMID:32326049
Old Mice Have Less Transcriptional Activation But Similar Periosteal Cell Proliferation Compared to Young-Adult Mice in Response to in vivo Mechanical Loading. PMID:32311160
The Autoimmune Protocol Diet Modifies Intestinal RNA Expression in Inflammatory Bowel Disease. PMID:32309803
Identification of key candidate genes and pathways revealing the protective effect of liraglutide on diabetic cardiac muscle by integrated bioinformatics analysis. PMID:32309328
Identification of hub genes in papillary thyroid carcinoma: robust rank aggregation and weighted gene co-expression network analysis. PMID:32299435
A network pharmacology study on the Tripteryguim wilfordii Hook for treatment of Crohn's disease. PMID:32293395
Discovery of novel biomarkers for atherosclerotic aortic aneurysm through proteomics-based assessment of disease progression. PMID:32286426
Weighted gene correlation network analysis reveals novel biomarkers associated with mesenchymal stromal cell differentiation in early phase. PMID:32280568
Tumor-Draining Lymph Secretome En Route to the Regional Lymph Node in Breast Cancer Metastasis. PMID:32273752
Integrative Analysis for the Roles of lncRNAs in the Immune Responses of Mouse PBMC Exposed to Low-Dose Ionizing Radiation. PMID:32269503
SMYD2 suppresses APC2 expression to activate the Wnt/β-catenin pathway and promotes epithelial-mesenchymal transition in colorectal cancer. PMID:32266106
Gene expression responses to anti-tuberculous drugs in a whole blood model. PMID:32264819
Knockout of IRF7 Highlights its Modulator Function of Host Response Against Avian Influenza Virus and the Involvement of MAPK and TOR Signaling Pathways in Chicken. PMID:32252379
RNA-Seq transcriptome profiling in three liver regeneration models in rats: comparative analysis of partial hepatectomy, ALLPS, and PVL. PMID:32251301
Phenotypic Screening of Chemical Libraries Enriched by Molecular Docking to Multiple Targets Selected from Glioblastoma Genomic Data. PMID:32243127
Automated gene data integration with Databio. PMID:32238171
Overexpression of DUSP6 enhances chemotherapy-resistance of ovarian epithelial cancer by regulating the ERK signaling pathway. PMID:32231719
Exploring Alzheimer's Disease Molecular Variability via Calculation of Personalized Transcriptional Signatures. PMID:32225014
Identification of a long non-coding RNA signature for predicting prognosis and biomarkers in lung adenocarcinoma. PMID:32218832
Characterization of the transcriptomes of Atoh1-induced hair cells in the mouse cochlea. PMID:32211215
Understanding of Zaire ebolavirus-human protein interaction for drug repurposing. PMID:32206696
Multi-omics Analysis of Primary Cell Culture Models Reveals Genetic and Epigenetic Basis of Intratumoral Phenotypic Diversity. PMID:32205176
Integrated bioinformatics analysis of the association between apolipoprotein E expression and patient prognosis in papillary thyroid carcinoma. PMID:32194729
Overexpression of miR-206 in osteosarcoma and its associated molecular mechanisms as assessed through TCGA and GEO databases. PMID:32194668
Identification of F5 as a Prognostic Biomarker in Patients with Gastric Cancer. PMID:32190689
Retinal endothelial cell phenotypic modifications during experimental autoimmune uveitis: a transcriptomic approach. PMID:32183784
Genomic Landscape and Mutational Spectrum of ADAMTS Family Genes in Mendelian Disorders Based on Gene Evidence Review for Variant Interpretation. PMID:32183147
Role of the XIST-miR-181a-COL4A1 axis in the development and progression of keratoconus. PMID:32165822
Establishment of a Prognostic Model Using Immune-Related Genes in Patients With Hepatocellular Carcinoma. PMID:32158466
Comparative expression profiles of host circulating miRNAs in response to Trichinella spiralis infection. PMID:32156309
Network Pharmacology Study on the Pharmacological Mechanism of Cinobufotalin Injection against Lung Cancer. PMID:32148531
Identification of hub genes and pathways in adrenocortical carcinoma by integrated bioinformatic analysis. PMID:32147961
Novel myocardial markers GADD45G and NDUFS5 identified by RNA-sequencing predicts left ventricular reverse remodeling in advanced non-ischemic heart failure: a retrospective cohort study. PMID:32138671
Identification of PTPRR and JAG1 as key genes in castration-resistant prostate cancer by integrated bioinformatics methods. PMID:32133801
Deregulation of miR-27a may contribute to canine fibroblast activation after coculture with a mast cell tumour cell line. PMID:32133790
Nuclear actin regulates cell proliferation and migration via inhibition of SRF and TEAD. PMID:32119877
Multiomics Evaluation of Human Fat-Derived Mesenchymal Stem Cells on an Osteobiologic Nanocomposite. PMID:32117598
Maternal Inulin Supplementation Alters Hepatic DNA Methylation Profile and Improves Glucose Metabolism in Offspring Mice. PMID:32116778
Quantitative Comparative Proteomics Reveals Candidate Biomarkers for the Early Prediction of Gestational Diabetes Mellitus: A Preliminary Study. PMID:32111749
Aberrant Expression of a Non-muscle RBFOX2 Isoform Triggers Cardiac Conduction Defects in Myotonic Dystrophy. PMID:32109384
Integrated characterization and validation of the prognostic significance of microRNA-200s in colorectal cancer. PMID:32099529
Identification of Candidate Genes and Therapeutic Agents for Light Chain Amyloidosis Based on Bioinformatics Approach. PMID:32099441
A transcriptional co-expression network-based approach to identify prognostic biomarkers in gastric carcinoma. PMID:32095347
Whole genome sequencing and comparative genomic analysis of oleaginous red yeast Sporobolomyces pararoseus NGR identifies candidate genes for biotechnological potential and ballistospores-shooting. PMID:32093624
19q13 KRAB zinc-finger protein ZNF471 activates MAPK10/JNK3 signaling but is frequently silenced by promoter CpG methylation in esophageal cancer. PMID:32089740
Hsa_circ_0011385 accelerates the progression of thyroid cancer by targeting miR-361-3p. PMID:32082079
Transcriptome analysis reveals the difference between "healthy" and "common" aging and their connection with age-related diseases. PMID:32077223
Potential frameworks to support evaluation of mechanistic data for developmental neurotoxicity outcomes: A symposium report. PMID:32068112
Identification of Hub Genes and Pathways in Gastric Adenocarcinoma Based on Bioinformatics Analysis. PMID:32058995
Functional heterogeneity of lymphocytic patterns in primary melanoma dissected through single-cell multiplexing. PMID:32057296
The Effect of 3'-Hydroxy-3,4,5,4'-Tetramethoxy -stilbene, the Metabolite of the Resveratrol Analogue DMU-212, on the Motility and Proliferation of Ovarian Cancer Cells. PMID:32046103
S1PR1-Associated Molecular Signature Predicts Survival in Patients with Sepsis. PMID:32045395
Local and Systemic Humoral Response to Autologous Lineage-Negative Cells Intrathecal Administration in ALS Patients. PMID:32041109
Dose-Dependent Effects of GLD-2 and GLD-1 on Germline Differentiation and Dedifferentiation in the Absence of PUF-8. PMID:32039211
Statin-induced myopathic changes in primary human muscle cells and reversal by a prostaglandin F2 alpha analogue. PMID:32034223
Epigenetic driver mutations in ARID1A shape cancer immune phenotype and immunotherapy. PMID:32027624
Study on the mechanisms of compound Kushen injection for the treatment of gastric cancer based on network pharmacology. PMID:32020871
Comparative Transcriptome Analysis of Different Dendrobium Species Reveals Active Ingredients-Related Genes and Pathways. PMID:32013237
White matter structure and myelin-related gene expression alterations with experience in adult rats. PMID:32001310
Effect of Bortezomib on Global Gene Expression in PC12-Derived Nerve Cells. PMID:31979371
Construction of a risk score prognosis model based on hepatocellular carcinoma microenvironment. PMID:31969776
Establishment and Characterization of Paired Primary Cultures of Human Pancreatic Cancer Cells and Stellate Cells Derived from the Same Tumor. PMID:31963309
The conserved transcriptional regulator CdnL is required for metabolic homeostasis and morphogenesis in Caulobacter. PMID:31961855
Identification of a Sixteen-gene Prognostic Biomarker for Lung Adenocarcinoma Using a Machine Learning Method. PMID:31956375
Cytochrome P450 family proteins as potential biomarkers for ovarian granulosa cell damage in mice with premature ovarian failure. PMID:31949819
Discovery of microarray-identified genes associated with the progression of cervical intraepithelial neoplasia. PMID:31949653
Molecular Mechanisms of Bortezomib Action: Novel Evidence for the miRNA-mRNA Interaction Involvement. PMID:31948068
Study of the Gastrointestinal Heat Retention Syndrome in Children: From Diagnostic Model to Biological Basis. PMID:31929814
N-glycosylation Site Analysis Reveals Sex-related Differences in Protein N-glycosylation in the Rice Brown Planthopper (Nilaparvata lugens). PMID:31924694
Targeting the non-canonical roles of PCNA modifies and increases the response to targeted anti-cancer therapy. PMID:31921382
A Maternal High-Fat Diet Induces DNA Methylation Changes That Contribute to Glucose Intolerance in Offspring. PMID:31920981
TGF-β orchestrates fibrogenic and developmental EMTs via the RAS effector RREB1. PMID:31915377
Transcriptome analyses identify hub genes and potential mechanisms in adenoid cystic carcinoma. PMID:31914060
Dysfunctional epigenetic aging of the normal colon and colorectal cancer risk. PMID:31900199
Identification of key candidate tumor biomarkers in non-small-cell lung cancer by in silico analysis. PMID:31897214
Identification of differentially expressed genes in the endothelial precursor cells of patients with type 2 diabetes mellitus by bioinformatics analysis. PMID:31897097
Epigenetic reprogramming underlies efficacy of DNA demethylation therapy in osteosarcomas. PMID:31889115
Characterization of a five-microRNA signature as a prognostic biomarker for esophageal squamous cell carcinoma. PMID:31882677
RNA-seq and ChIP-seq as Complementary Approaches for Comprehension of Plant Transcriptional Regulatory Mechanism. PMID:31881735
The regulatory effect of microRNA-21a-3p on the promotion of telocyte angiogenesis mediated by PI3K (p110α)/AKT/mTOR in LPS induced mice ARDS. PMID:31878977
Advancing the Role of Gamma-Tocotrienol as Proteasomes Inhibitor: A Quantitative Proteomic Analysis of MDA-MB-231 Human Breast Cancer Cells. PMID:31877708
Significance of TP53 mutation in bladder cancer disease progression and drug selection. PMID:31871844
Integrative analysis of DNA methylation and gene expression identified cervical cancer-specific diagnostic biomarkers. PMID:31871774
CDK1 and CCNB1 as potential diagnostic markers of rhabdomyosarcoma: validation following bioinformatics analysis. PMID:31870357
Joint Transcriptomic Analysis of Lung Cancer and Other Lung Diseases. PMID:31867044
ERK1 indicates good prognosis and inhibits breast cancer progression by suppressing YAP1 signaling. PMID:31848326
Expression Profile of the Chromosome 14 MicroRNA Cluster (C14MC) Ortholog in Equine Maternal Circulation throughout Pregnancy and Its Potential Implications. PMID:31847075
Epigenomic analysis of gastrulation identifies a unique chromatin state for primed pluripotency. PMID:31844322
BCL2 and hsa-miR-181a-5p are potential biomarkers associated with papillary thyroid cancer based on bioinformatics analysis. PMID:31842912
Systematic expression analysis of WEE family kinases reveals the importance of PKMYT1 in breast carcinogenesis. PMID:31837068
Changes in meta-transcriptome of rumen epimural microbial community and liver transcriptome in young calves with feed induced acidosis. PMID:31831817
T Cells Produce IFN-α in the TREX1 D18N Model of Lupus-like Autoimmunity. PMID:31826941
Long Noncoding RNA LINC00265 Targets EGFR and Promotes Deterioration of Colorectal Cancer: A Comprehensive Study Based on Data Mining and in vitro Validation. PMID:31824175
Identification of Transcriptional Metabolic Dysregulation in Subtypes of Pituitary Adenoma by Integrated Bioinformatics Analysis. PMID:31819570
Suppression of FOXM1 activities and breast cancer growth in vitro and in vivo by a new class of compounds. PMID:31815181
A pilot study comparing the genetic molecular biology of gestational and non-gestational choriocarcinoma. PMID:31814908
Identification of potential pathogenic candidates or diagnostic biomarkers in papillary thyroid carcinoma using expression and methylation profiles. PMID:31814850
Arresting proliferation improves the cell identity of corneal endothelial cells in the New Zealand rabbit. PMID:31814700
Reduced expression of microRNA-139-5p in hepatocellular carcinoma results in a poor outcome: An exploration the roles of microRNA-139-5p in tumorigenesis, advancement and prognosis at the molecular biological level using an integrated meta-analysis and bioinformatic investigation. PMID:31807180
Whole genome sequencing of Entamoeba nuttalli reveals mammalian host-related molecular signatures and a novel octapeptide-repeat surface protein. PMID:31805050
A dual role of dLsd1 in oogenesis: regulating developmental genes and repressing transposons. PMID:31799607
Omics-based Investigation of Diet-induced Obesity Synergized with HBx, Src, and p53 Mutation Accelerating Hepatocarcinogenesis in Zebrafish Model. PMID:31795276
Episo: quantitative estimation of RNA 5-methylcytosine at isoform level by high-throughput sequencing of RNA treated with bisulfite. PMID:31794005
Integrated transcriptomic and epigenetic data analysis identifiesaberrant expression of genes in acute myeloid leukemia with MLL‑AF9 translocation. PMID:31789407
Mutations in KIAA1109, CACNA1C, BSN, AKAP13, CELSR2, and HELZ2 Are Associated With the Prognosis in Endometrial Cancer. PMID:31787999
Systematic construction and validation of an immune prognostic model for lung adenocarcinoma. PMID:31779055
MLLT3 governs human haematopoietic stem-cell self-renewal and engraftment. PMID:31776511
Brassinosteroids Antagonize Jasmonate-Activated Plant Defense Responses through BRI1-EMS-SUPPRESSOR1 (BES1). PMID:31776183
Bioinformatics analysis of hepatic gene expression profiles in type 2 diabetes mellitus. PMID:31772629
Gene Expression Profiles Controlled by the Alternative Splicing Factor Nova2 in Endothelial Cells. PMID:31771184
Identification of the potential biomarkers in patients with glioma: a weighted gene co-expression network analysis. PMID:31761927
Gcn5-Mediated Histone Acetylation Governs Nucleosome Dynamics in Spermiogenesis. PMID:31761669
TS-GOEA: a web tool for tissue-specific gene set enrichment analysis based on gene ontology. PMID:31760951
TFIIIC Binding to Alu Elements Controls Gene Expression via Chromatin Looping and Histone Acetylation. PMID:31759822
Arabidopsis proteome and the mass spectral assay library. PMID:31757973
Spatial organization of endometrial gene expression at the onset of embryo attachment in pigs. PMID:31752681
Establishment of a mouse model for injury-induced scar formation and the accompanying chronic pain: Comprehensive microarray analysis of molecular expressions in fibrosis and hyperalgesia. PMID:31749400
Prediction of crucial epigenetically‑associated, differentially expressed genes by integrated bioinformatics analysis and the identification of S100A9 as a novel biomarker in psoriasis. PMID:31746348
Single-Cell RNA Sequencing of Plant-Associated Bacterial Communities. PMID:31736899
Identification of key biomarkers associated with development and prognosis in patients with ovarian carcinoma: evidence from bioinformatic analysis. PMID:31729978
Transcriptome analysis of miRNA and mRNA in the livers of pigs with highly diverged backfat thickness. PMID:31727987
The assessment of efficient representation of drug features using deep learning for drug repositioning. PMID:31726977
A network-based predictive gene expression signature for recurrence risks in stage II colorectal cancer. PMID:31724326
Identification of the molecular mechanisms associated with acute type A aortic dissection through bioinformatics methods. PMID:31721906
Identification of CD2, CCL5 and CCR5 as potential therapeutic target genes for renal interstitial fibrosis. PMID:31700890
Characterization and Identification of Lysine Succinylation Sites based on Deep Learning Method. PMID:31700141
Generation of human induced pluripotent stem cell-derived cardiomyocytes in 2D monolayer and scalable 3D suspension bioreactor cultures with reduced batch-to-batch variations. PMID:31695764
Identifying the Cellular Interactome of Epstein-Barr Virus Lytic Regulator Zta Reveals Cellular Targets Contributing to Viral Replication. PMID:31694936
An RB-Condensin II Complex Mediates Long-Range Chromosome Interactions and Influences Expression at Divergently Paired Genes. PMID:31685548
GWAS on Imputed Whole-Genome Resequencing From Genotyping-by-Sequencing Data for Farrowing Interval of Different Parities in Pigs. PMID:31681435
Analysis of Transcriptome, Selected Intracellular Signaling Pathways, Proliferation and Apoptosis of LNCaP Cells Exposed to High Leptin Concentrations. PMID:31671654
A transcriptomic study of selenium against liver injury induced by beta-cypermethrin in mice by RNA-seq. PMID:31659573
The Impact of Moyamoya Disease and RNF213 Mutations on the Spectrum of Plasma Protein and MicroRNA. PMID:31658621
Promising Prognosis Marker Candidates on the Status of Epithelial-Mesenchymal Transition and Glioma Stem Cells in Glioblastoma. PMID:31653034
Mitochondrial 3243A > G mutation confers pro-atherogenic and pro-inflammatory properties in MELAS iPS derived endothelial cells. PMID:31641105
Comprehensive analysis of the lncRNA‑associated competing endogenous RNA network in breast cancer. PMID:31638237
Identification of key genes and multiple molecular pathways of metastatic process in prostate cancer. PMID:31637138
HNF1B-mediated repression of SLUG is suppressed by EZH2 in aggressive prostate cancer. PMID:31636385
Identification of biomarker microRNA-mRNA regulatory pairs for predicting the docetaxel resistance in prostate cancer. PMID:31632491
Disruptive mutations in TANC2 define a neurodevelopmental syndrome associated with psychiatric disorders. PMID:31616000
Low Dose Carbon Monoxide Exposure in Idiopathic Pulmonary Fibrosis Produces a CO Signature Comprised of Oxidative Phosphorylation Genes. PMID:31615996
POPDC3 is a potential biomarker for prognosis and radioresistance in patients with head and neck squamous cell carcinoma. PMID:31612055
Systematic Profiling of Alternative mRNA Splicing Signature for Predicting Glioblastoma Prognosis. PMID:31608231
Identification of potential biomarkers and pivotal biological pathways for prostate cancer using bioinformatics analysis methods. PMID:31598425
Comprehensive investigation of the clinical significance and molecular mechanisms of plasmacytoma variant translocation 1 in sarcoma using genome-wide RNA sequencing data. PMID:31598169
Driving Neurogenesis in Neural Stem Cells with High Sensitivity Optogenetics. PMID:31595404
Curcumin-Gene Expression Response in Hormone Dependent and Independent Metastatic Prostate Cancer Cells. PMID:31581661
Disruptive variants of CSDE1 associate with autism and interfere with neuronal development and synaptic transmission. PMID:31579823
Protein microarray analysis of cytokine expression changes in distal stumps after sciatic nerve transection. PMID:31571662
Identification of key genes and microRNAs involved in kidney Wilms tumor by integrated bioinformatics analysis. PMID:31555364
Causes and Consequences of A Glutamine Induced Normoxic HIF1 Activity for the Tumor Metabolism. PMID:31554283
Identification of protein targets for the antidepressant effects of Kai-Xin-San in Chinese medicine using isobaric tags for relative and absolute quantitation. PMID:31552903
Integrated Analysis of Multiple Microarray Studies to Identify Novel Gene Signatures in Non-alcoholic Fatty Liver Disease. PMID:31551930
Transcriptomic analysis reveals new hippocampal gene networks induced by prolactin. PMID:31551509
Distinct Roles for BET Family Members in Estrogen Receptor α Enhancer Function and Gene Regulation in Breast Cancer Cells. PMID:31551256
Computational identification of key genes that may regulate gene expression reprogramming in Alzheimer's patients. PMID:31545826
Microarray‑based analysis of COL11A1 and TWIST1 as important differentially‑expressed pathogenic genes between left and right‑sided colon cancer. PMID:31545476
The four‑microRNA signature identified by bioinformatics analysis predicts the prognosis of nasopharyngeal carcinoma patients. PMID:31545473
The Anti-Apoptotic Effect of ASC-Exosomes in an In Vitro ALS Model and Their Proteomic Analysis. PMID:31540100
Genomic and epigenomic mapping of leptin-responsive neuronal populations involved in body weight regulation. PMID:31535083
Identification and characterization of SEC24D as a susceptibility gene for hepatitis B virus infection. PMID:31530870
Dissection of Pharmacological Mechanism of Chinese Herbal Medicine Yihuo Huatan Formula on Chronic Obstructive Pulmonary Disease: A Systems Pharmacology-Based Study. PMID:31530860
HOXC10 promotes migration and invasion via the WNT-EMT signaling pathway in oral squamous cell carcinoma. PMID:31528218
Estrogen receptors promote NSCLC progression by modulating the membrane receptor signaling network: a systems biology perspective. PMID:31511014
FunDMDeep-m6A: identification and prioritization of functional differential m6A methylation genes. PMID:31510685
ABCD: Alzheimer's disease Biomarkers Comprehensive Database. PMID:31501752
Comparative adipose transcriptome analysis digs out genes related to fat deposition in two pig breeds. PMID:31501489
Proteomic and transcriptional profiling of rat amygdala following social play. PMID:31493430
The Role of MicroRNAs in Early Chondrogenesis of Human Induced Pluripotent Stem Cells (hiPSCs). PMID:31492046
RhoC regulates radioresistance via crosstalk of ROCK2 with the DNA repair machinery in cervical cancer. PMID:31488179
Identification of Potential Biomarkers and Survival Analysis for Head and Neck Squamous Cell Carcinoma Using Bioinformatics Strategy: A Study Based on TCGA and GEO Datasets. PMID:31485443
Maternal Low-Fat Diet Programs the Hepatic Epigenome despite Exposure to an Obesogenic Postnatal Diet. PMID:31484384
Brain somatic mutations in MTOR reveal translational dysregulations underlying intractable focal epilepsy. PMID:31483294
Temporal expression profiling of long noncoding RNA and mRNA in the peripheral blood during porcine development. PMID:31480157
Identification of modules and functional analysis in CRC subtypes by integrated bioinformatics analysis. PMID:31469863
P4HB, a Novel Hypoxia Target Gene Related to Gastric Cancer Invasion and Metastasis. PMID:31467922
Prim-O-glucosylcimifugin enhances the antitumour effect of PD-1 inhibition by targeting myeloid-derived suppressor cells. PMID:31462297
Intrarenal microRNA signature related to the fibrosis process in chronic kidney disease: identification and functional validation of key miRNAs. PMID:31455266
Identification of serum exosomal microRNAs in acute spinal cord injured rats. PMID:31450959
A Coordinated Response at The Transcriptome and Interactome Level is Required to Ensure Uropathogenic Escherichia coli Survival during Bacteremia. PMID:31450662
Arabidopsis DXO1 possesses deNADding and exonuclease activities and its mutation affects defense-related and photosynthetic gene expression. PMID:31449356
Identification of microRNA-181 as a promising biomarker for predicting the poor survival in colorectal cancer. PMID:31448575
An Insight Into the Molecular Mechanism of Berberine Towards Multiple Cancer Types Through Systems Pharmacology. PMID:31447670
Statistical genomics in rare cancer. PMID:31437624
Upregulation of MAPK10, TUBB2B and RASL11B may contribute to the development of neuroblastoma. PMID:31432180
Integral analyses of survival-related long non-coding RNA MIR210HG and its prognostic role in colon cancer. PMID:31423171
Epigenetic silencing of a multifunctional plant stress regulator. PMID:31418686
Application of the High-throughput TAB-Array for the Discovery of Novel 5-Hydroxymethylcytosine Biomarkers in Pancreatic Ductal Adenocarcinoma. PMID:31413874
Gene expression profiling reveals candidate biomarkers and probable molecular mechanism in diabetic peripheral neuropathy. PMID:31413612
Identification of Key Genes and Pathways in Pancreatic Cancer Gene Expression Profile by Integrative Analysis. PMID:31412643
Brain Gene Expression in a Novel Mouse Model of Postpartum Mood Disorder. PMID:31410299
The prognostic value of LINC01296 in pan-cancers and the molecular regulatory mechanism in hepatocellular carcinoma: a comprehensive study based on data mining, bioinformatics, and in vitro validation. PMID:31410029
The genomic landscape of estrogen receptor α binding sites in mouse mammary gland. PMID:31408468
Neurotoxic potential of reactive astrocytes in canine distemper demyelinating leukoencephalitis. PMID:31406213
The Essential Oils and Eucalyptol From Artemisia vulgaris L. Prevent Acetaminophen-Induced Liver Injury by Activating Nrf2-Keap1 and Enhancing APAP Clearance Through Non-Toxic Metabolic Pathway. PMID:31404264
Clinical value of microRNA-198-5p downregulation in lung adenocarcinoma and its potential pathways. PMID:31402959
Computational Assessment of Bacterial Protein Structures Indicates a Selection Against Aggregation. PMID:31398930
Maternal-to-zygotic transition as a potential target for niclosamide during early embryogenesis. PMID:31398420
Identification of significant gene and pathways involved in HBV-related hepatocellular carcinoma by bioinformatics analysis. PMID:31392101
Characterization of cellular transcriptomic signatures induced by different respiratory viruses in human reconstituted airway epithelia. PMID:31391513
Identification of potential core genes in Kawasaki disease using bioinformatics analysis. PMID:31387475
Comparative Analysis of the Liver and Spleen Transcriptomes between Holstein and Yunnan Humped Cattle. PMID:31387199
Identifying miltefosine-resistant key genes in protein-protein interactions network and experimental verification in Iranian Leishmania major. PMID:31385238
Transcriptome profiling of the liver among the prenatal and postnatal stages in chickens. PMID:31376353
Differential gene expression analysis reveals novel genes and pathways in pediatric septic shock patients. PMID:31375728
Differential network analysis and protein-protein interaction study reveals active protein modules in glucocorticoid resistance for infant acute lymphoblastic leukemia. PMID:31370801
Uncovering missed indels by leveraging unmapped reads. PMID:31366961
Patterns of Geographical and Potential Adaptive Divergence in the Genome of the Common Carp (Cyprinus carpio). PMID:31354795
Mammalian Annotation Database for improved annotation and functional classification of Omics datasets from less well-annotated organisms. PMID:31353404
Single-Cell RNA-Sequencing and Metabolomics Analyses Reveal the Contribution of Perivascular Adipose Tissue Stem Cells to Vascular Remodeling. PMID:31340667
Network analysis of hyphae forming proteins in Candida albicans identifies important proteins responsible for pathovirulence in the organism. PMID:31338453
Systems biology and network pharmacology of frailty reveal novel epigenetic targets and mechanisms. PMID:31332237
Insights about multi-targeting and synergistic neuromodulators in Ayurvedic herbs against epilepsy: integrated computational studies on drug-target and protein-protein interaction networks. PMID:31332210
Transcriptome Analysis of Landrace Pig Subcutaneous Preadipocytes during Adipogenic Differentiation. PMID:31331100
Identification of Key Genes and Pathways Involved in the Heterogeneity of Intrinsic Growth Ability Between Neurons After Spinal Cord Injury in Adult Zebrafish. PMID:31325155
Wx: a neural network-based feature selection algorithm for transcriptomic data. PMID:31324856
Comprehensive analysis of a long non-coding RNA-mediated competitive endogenous RNA network in glioblastoma multiforme. PMID:31316603
Investigating the Proteomic Profile of HT-29 Colon Cancer Cells After Lactobacillus kefiri SGL 13 Exposure Using the SWATH Method. PMID:31309410
Stress, novel sex genes, and epigenetic reprogramming orchestrate socially controlled sex change. PMID:31309157
Detection of a novel panel of somatic mutations in plasma cell-free DNA and its diagnostic value in hepatocellular carcinoma. PMID:31303788
Human Trophoblast Differentiation Is Associated With Profound Gene Regulatory and Epigenetic Changes. PMID:31294776
Identification of microRNA-92a and the related combination biomarkers as promising substrates in predicting risk, recurrence and poor survival of colorectal cancer. PMID:31289586
High-content screen in human pluripotent cells identifies miRNA-regulated pathways controlling pluripotency and differentiation. PMID:31287022
Three Biomarkers Predict Gastric Cancer Patients' Susceptibility To Fluorouracil-based Chemotherapy. PMID:31281472
A Novel Genes Signature Associated with the Progression of Polycystic Ovary Syndrome. PMID:31278444
Bioinformatics analysis of differentially expressed genes involved in human developmental chondrogenesis. PMID:31277141
RNA Sequencing of Osteosarcoma Gene Expression Profile Revealed that miR-214-3p Facilitates Osteosarcoma Cell Proliferation via Targeting Ubiquinol-Cytochrome c Reductase Core Protein 1 (UQCRC1). PMID:31276465
Pleiotropic effects of rfa-gene mutations on Escherichia coli envelope properties. PMID:31273247
Maternal and Post-weaning High-Fat Diets Produce Distinct DNA Methylation Patterns in Hepatic Metabolic Pathways within Specific Genomic Contexts. PMID:31262088
Identifying miRNA-mRNA Pairs and Novel miRNAs from Hepatocelluar Carcinoma miRNomes and TCGA Database. PMID:31258761
PPARα gene is a diagnostic and prognostic biomarker in clear cell renal cell carcinoma by integrated bioinformatics analysis. PMID:31258735
Bioinformatics analysis of mRNA and miRNA microarray to identify the key miRNA‑gene pairs in small‑cell lung cancer. PMID:31257520
Lipid-Associated Macrophages Control Metabolic Homeostasis in a Trem2-Dependent Manner. PMID:31257031
SETD1A protects from senescence through regulation of the mitotic gene expression program. PMID:31253781
FXR overexpression alters adipose tissue architecture in mice and limits its storage capacity leading to metabolic derangements. PMID:31253637
Characterization of bidirectional gene pairs in The Cancer Genome Atlas (TCGA) dataset. PMID:31245179
Discovery and characterization of functional modules associated with body weight in broilers. PMID:31235723
Astrocyte-specific transcriptome analysis using the ALDH1L1 bacTRAP mouse reveals novel biomarkers of astrogliosis in response to neurotoxicity. PMID:31222732
Secretion of fibronectin by human pancreatic stellate cells promotes chemoresistance to gemcitabine in pancreatic cancer cells. PMID:31208372
Perturbation of the immune cells and prenatal neurogenesis by the triplication of the Erg gene in mouse models of Down syndrome. PMID:31206867
Screening of differentially expressed genes and identification of NUF2 as a prognostic marker in breast cancer. PMID:31198978
Identification of the iduronate-2-sulfatase proteome in wild-type mouse brain. PMID:31193135
Identification of novel biomarkers and candidate small molecule drugs in non-small-cell lung cancer by integrated microarray analysis. PMID:31190860
Overexpression of NCAPH is upregulated and predicts a poor prognosis in prostate cancer. PMID:31186803
Transcriptomic changes in the prefrontal cortex of rats as a function of age and cognitive engagement. PMID:31185277
Differentially Expressed Gene Screening, Biological Function Enrichment, and Correlation with Prognosis in Non-Small Cell Lung Cancer. PMID:31181055
Bioinformatics analysis of a long non‑coding RNA and mRNA regulation network in rats with middle cerebral artery occlusion based on RNA sequencing. PMID:31180537
Differentially expressed genes between systemic sclerosis and rheumatoid arthritis. PMID:31178673
m6A Regulates Neurogenesis and Neuronal Development by Modulating Histone Methyltransferase Ezh2. PMID:31154015
Inhibition of protein disulfide isomerase in glioblastoma causes marked downregulation of DNA repair and DNA damage response genes. PMID:31149044
DNA methylation profiles are associated with complex regional pain syndrome after traumatic injury. PMID:31145213
Runx2 stimulates neoangiogenesis through the Runt domain in melanoma. PMID:31142788
NAD tagSeq reveals that NAD+-capped RNAs are mostly produced from a large number of protein-coding genes in Arabidopsis. PMID:31142650
Significance of PTEN Mutation in Cellular Process, Prognosis, and Drug Selection in Clear Cell Renal Cell Carcinoma. PMID:31139560
Identification of hub genes and therapeutic drugs in esophageal squamous cell carcinoma based on integrated bioinformatics strategy. PMID:31139019
Expression Profile Analysis Identifies a Novel Five-Gene Signature to Improve Prognosis Prediction of Glioblastoma. PMID:31130992
The R2TP complex regulates paramyxovirus RNA synthesis. PMID:31121004
Robust Transcriptional Response to Heat Shock Impacting Diverse Cellular Processes despite Lack of Heat Shock Factor in Microsporidia. PMID:31118302
Investigation of the clinical significance and prospective molecular mechanisms of cystatin genes in patients with hepatitis B virus‑related hepatocellular carcinoma. PMID:31115549
Macrophage centripetal migration drives spontaneous healing process after spinal cord injury. PMID:31106270
Sphingosine-1-phosphate signalling drives an angiogenic transcriptional programme in diffuse large B cell lymphoma. PMID:31097785
Identification of potential biomarkers for diagnosis of pancreatic and biliary tract cancers by sequencing of serum microRNAs. PMID:31096984
Unbiased Boolean analysis of public gene expression data for cell cycle gene identification. PMID:31091168
Identification of novel biomarkers and small molecule drugs in human colorectal cancer by microarray and bioinformatics analysis. PMID:31087508
Impact of Colon-Specific DNA Methylation-Regulated Gene Modules on Colorectal Cancer Patient Survival. PMID:31083646
Distinct Prognostic Values of Phospholipase C Beta Family Members for Non-Small Cell Lung Carcinoma. PMID:31080817
De novo emergence and potential function of human-specific tandem repeats in brain-related loci. PMID:31069507
Sensory experience remodels genome architecture in neural circuit to drive motor learning. PMID:31068695
Integrative analysis of transcriptome-wide association study data and mRNA expression profiles identified candidate genes and pathways associated with atrial fibrillation. PMID:31065785
DNA methylome of human neonatal umbilical cord: Enrichment of differentially methylated regions compared to umbilical cord blood DNA at transcription factor genes involved in body patterning and effects of maternal folate deficiency or children's sex. PMID:31063509
Tobacco-Related Alterations in Airway Gene Expression are Rapidly Reversed Within Weeks Following Smoking-Cessation. PMID:31061400
Proteomic Profiling of Human Prostate Cancer-associated Fibroblasts (CAF) Reveals LOXL2-dependent Regulation of the Tumor Microenvironment. PMID:31061140
Quantitative Proteomics Identifies DNA Repair as a Novel Biological Function for Hepatocyte Nuclear Factor 4α in Colorectal Cancer Cells. PMID:31060309
Identification of time‑series differentially expressed genes and pathways associated with heart failure post‑myocardial infarction using integrated bioinformatics analysis. PMID:31059043
Uncovering changes in proteomic signature of rat pelvic floor muscles in pregnancy. PMID:31047881
FCRL5+ Memory B Cells Exhibit Robust Recall Responses. PMID:31042472
Identification of RE1-Silencing Transcription Factor as a Promoter of Metastasis in Pancreatic Cancer. PMID:31041193
Identification of DNA-Methylated CpG Islands Associated With Gene Silencing in the Adult Body Tissues of the Ogye Chicken Using RNA-Seq and Reduced Representation Bisulfite Sequencing. PMID:31040866
Histone acetylation promotes long-lasting defense responses and longevity following early life heat stress. PMID:31034475
DNA alteration-based classification of uveal melanoma gives better prognostic stratification than immune infiltration, which has a neutral effect in high-risk group. PMID:31025552
Matrix Metalloproteinase 11 Is a Potential Therapeutic Target in Lung Adenocarcinoma. PMID:31024988
Genome-wide Kdm4 histone demethylase transcriptional regulation in Drosophila. PMID:31020413
Fatty acid-binding protein 1 increases steer fat deposition by facilitating the synthesis and secretion of triacylglycerol in liver. PMID:31009469
TAF5L and TAF6L Maintain Self-Renewal of Embryonic Stem Cells via the MYC Regulatory Network. PMID:31005419
Comparative RNA-seq analysis of the drought-sensitive lentil (Lens culinaris) root and leaf under short- and long-term water deficits. PMID:31001704
Integration of transcriptomic data in a genome-scale metabolic model to investigate the link between obesity and breast cancer. PMID:30999849
Identification of key pathways and genes in nasopharyngeal carcinoma using bioinformatics analysis. PMID:30988824
A four-gene signature for prognosis in breast cancer patients with hypermethylated IL15RA. PMID:30988805
Hypocrellin A-based photodynamic action induces apoptosis in A549 cells through ROS-mediated mitochondrial signaling pathway. PMID:30972277
Urinary miRNA-29a-3p levels are associated with metabolic parameters via regulation of IGF1 in patients with metabolic syndrome. PMID:30972221
Conserved motifs in nuclear genes encoding predicted mitochondrial proteins in Trypanosoma cruzi. PMID:30964924
Gene expression profiles between cystic and solid vestibular schwannoma indicate susceptible molecules and pathways in the cystic formation of vestibular schwannoma. PMID:30953268
Building the drug-GO function network to screen significant candidate drugs for myasthenia gravis. PMID:30947317
Co-regulatory Network of Oncosuppressor miRNAs and Transcription Factors for Pathology of Human Hepatic Cancer Stem Cells (HCSC). PMID:30944375
Co-expression network modeling identifies key long non-coding RNA and mRNA modules in altering molecular phenotype to develop stress-induced depression in rats. PMID:30944317
Identification of the Biomarkers and Pathological Process of Osteoarthritis: Weighted Gene Co-expression Network Analysis. PMID:30941059
Deciphering the Pharmacological Mechanism of the Herb Radix Ophiopogonis in the Treatment of Nasopharyngeal Carcinoma by Integrating iTRAQ-Coupled 2-D LC-MS/MS Analysis and Network Investigation. PMID:30936832
Uterine fluid proteome changes during diapause and resumption of embryo development in roe deer (Capreolus capreolus). PMID:30933930
Insights into the Signal Transduction Pathways of Mouse Lung Type II Cells Revealed by Transcription Factor Profiling in the Transcriptome. PMID:30929409
Hippocampal gene expression patterns linked to late-life physical activity oppose age and AD-related transcriptional decline. PMID:30927700
HDAC1 and HDAC2 independently regulate common and specific intrinsic responses in murine enteroids. PMID:30926862
Integrated analysis of lncRNA and mRNA repertoires in Marek's disease infected spleens identifies genes relevant to resistance. PMID:30922224
Parent of origin genetic effects on methylation in humans are common and influence complex trait variation. PMID:30918249
Dietary Restriction Extends Lifespan through Metabolic Regulation of Innate Immunity. PMID:30905669
Transcriptome analysis of rumen epithelium and meta-transcriptome analysis of rumen epimural microbial community in young calves with feed induced acidosis. PMID:30894588
Identification of Candidate Genes and MicroRNAs for Acute Myocardial Infarction by Weighted Gene Coexpression Network Analysis. PMID:30886860
Development and validation of a TP53-associated immune prognostic model for hepatocellular carcinoma. PMID:30885723
Thrombospondin-2 regulates extracellular matrix production, LOX levels, and cross-linking via downregulation of miR-29. PMID:30876926
Transcriptome profiling analysis reveals that CXCL2 is involved in anlotinib resistance in human lung cancer cells. PMID:30871526
Identification of differentially expressed key genes between glioblastoma and low-grade glioma by bioinformatics analysis. PMID:30867991
circLPAR1 is a novel biomarker of prognosis for muscle-invasive bladder cancer with invasion and metastasis by miR-762. PMID:30867795
Combined analysis and validation for DNA methylation and gene expression profiles associated with prostate cancer. PMID:30867653
A glucagon-like peptide-1 analog, liraglutide, ameliorates endothelial dysfunction through miRNAs to inhibit apoptosis in rats. PMID:30863684
Amorphous silica nanoparticles induce tumorigenesis via regulating ATP5H/SOD1-related oxidative stress, oxidative phosphorylation and EIF4G2/PABPC1-associated translational initiation. PMID:30863671
Identification of key pathways and hub genes in basal-like breast cancer using bioinformatics analysis. PMID:30863098
Variable outcomes of human heart attack recapitulated in genetically diverse mice. PMID:30854227
Dark-colored maple syrup treatment induces S-phase cell cycle arrest via reduced proliferating cell nuclear antigen expression in colorectal cancer cells. PMID:30854045
Comparative Gene Expression Profiles in Parathyroid Adenoma and Normal Parathyroid Tissue. PMID:30832348
Genomic Variations in Susceptibility to Intracranial Aneurysm in the Korean Population. PMID:30823506
Proteomic analysis reveals a protective role of specific macrophage subsets in liver repair. PMID:30814596
Prediction of Drug Positioning for Quan-Du-Zhong Capsules Against Hypertensive Nephropathy Based on the Robustness of Disease Network. PMID:30809144
The promising novel biomarkers and candidate small molecule drugs in kidney renal clear cell carcinoma: Evidence from bioinformatics analysis of high-throughput data. PMID:30793530
RNA-Seq profiling of circular RNAs and potential function of hsa_circ_0002360 in human lung adenocarcinom. PMID:30787976
Pancreatic cancer biomarker detection by two support vector strategies for recursive feature elimination. PMID:30767554
Comparison of the Transcriptomes and Proteomes of Serum Exosomes from Marek's Disease Virus-Vaccinated and Protected and Lymphoma-Bearing Chickens. PMID:30764491
Repurposing of Drugs as Novel Influenza Inhibitors From Clinical Gene Expression Infection Signatures. PMID:30761132
Analysis of the Functional Relevance of Epigenetic Chromatin Marks in the First Intron Associated with Specific Gene Expression Patterns. PMID:30753418
Competitive Endogenous RNA (ceRNA) Regulation Network of lncRNA-miRNA-mRNA in Colorectal Carcinogenesis. PMID:30734239
uPAR isoform 2 forms a dimer and induces severe kidney disease in mice. PMID:30730305
IFN regulatory factor-8 expression in macrophages governs an antimetastatic program. PMID:30728331
Effects of CPAP on the transcriptional signatures in patients with obstructive sleep apnea via coexpression network analysis. PMID:30719767
Conserved Disease Modules Extracted From Multilayer Heterogeneous Disease and Gene Networks for Understanding Disease Mechanisms and Predicting Disease Treatments. PMID:30713550
Gene fingerprint model for literature based detection of the associations among complex diseases: a case study of COPD. PMID:30700303
Induction of desiccation tolerance in desiccation sensitive Citrus limon seeds. PMID:30697936
Transcriptomics analysis of host liver and meta-transcriptome analysis of rumen epimural microbial community in young calves treated with artificial dosing of rumen content from adult donor cow. PMID:30692556
Development and validation of nomograms integrating immune-related genomic signatures with clinicopathologic features to improve prognosis and predictive value of triple-negative breast cancer: A gene expression-based retrospective study. PMID:30677255
ISL1 predicts poor outcomes for patients with gastric cancer and drives tumor progression through binding to the ZEB1 promoter together with SETD7. PMID:30674889
Hypomethylation of STAT1 and HLA-DRB1 is associated with type-I interferon-dependent HLA-DRB1 expression in lupus CD8+ T cells. PMID:30674474
The expression of chondrogenesis-related and arthritis-related genes in human ONFH cartilage with different Ficat stages. PMID:30671313
Unveiling Active Constituents and Potential Targets Related to the Hematinic Effect of Steamed Panax notoginseng Using Network Pharmacology Coupled With Multivariate Data Analyses. PMID:30670967
Identification of potential genes and pathways for response prediction of neoadjuvant chemoradiotherapy in patients with rectal cancer by systemic biological analysis. PMID:30655792
Coexpression modules constructed by weighted gene co-expression network analysis indicate ubiquitin-mediated proteolysis as a potential biomarker of uveal melanoma. PMID:30651788
OCT4 maintains self-renewal and reverses senescence in human hair follicle mesenchymal stem cells through the downregulation of p21 by DNA methyltransferases. PMID:30646941
Network Analyses of Integrated Differentially Expressed Genes in Papillary Thyroid Carcinoma to Identify Characteristic Genes. PMID:30646607
GOTrapper: a tool to navigate through branches of gene ontology hierarchy. PMID:30634902
Commonly Used Pancreatic Stellate Cell Cultures Differ Phenotypically and in Their Interactions with Pancreatic Cancer Cells. PMID:30621293
Epigenetic Alternations of MicroRNAs and DNA Methylation Contribute to Liver Metastasis of Colorectal Cancer. PMID:30604369
A three-gene methylation marker panel for the nodal metastatic risk assessment of muscle-invasive bladder cancer. PMID:30603903
Analysis of dynamic molecular networks for pancreatic ductal adenocarcinoma progression. PMID:30598639
Integrating proteomic and phosphoproteomic data for pathway analysis in breast cancer. PMID:30577793
Smell of Infection: A Novel, Noninvasive Method for Detection of Fish Excretory-Secretory Proteins. PMID:30576144
Cardiac function evaluation for a novel one-step detoxification product of Aconiti Lateralis Radix Praeparata. PMID:30568725
Atypical GATA transcription factor TRPS1 represses gene expression by recruiting CHD4/NuRD(MTA2) and suppresses cell migration and invasion by repressing TP63 expression. PMID:30563971
Identifying mouse developmental essential genes using machine learning. PMID:30563825
MicroRNA-150 down Regulation in Acute Myeloid Leukaemia Patients and Its Prognostic Implication. PMID:30559849
Proteomic Analysis of Zn Depletion/Repletion in the Hormone-Secreting Thyroid Follicular Cell Line FRTL-5. PMID:30558183
Gene Expression Studies for the Development of Particle Therapy. PMID:30555854
Identification of molecular signatures of cystic fibrosis disease status with plasma-based functional genomics. PMID:30540547
Integrated analysis reveals key genes with prognostic value in lung adenocarcinoma. PMID:30538558
Dissecting the Genomic Architecture of Resistance to Eimeria maxima Parasitism in the Chicken. PMID:30534137
Pancreatic-cancer-cell-derived trefoil factor 2 impairs maturation and migration of human monocyte-derived dendritic cells in vitro. PMID:30533259
Transgene-associated human growth hormone expression in pancreatic β-cells impairs identification of sex-based gene expression differences. PMID:30532991
Abnormal DNA Methylation in Thoracic Spinal Cord Tissue Following Transection Injury. PMID:30531681
A Serum-Induced Transcriptome and Serum Cytokine Signature Obtained at Diagnosis Correlates with the Development of Early Pancreatic Ductal Adenocarcinoma Metastasis. PMID:30530849
Practical considerations on performing and analyzing CLIP-seq experiments to identify transcriptomic-wide RNA-protein interactions. PMID:30527764
NF-κB p65 dimerization and DNA-binding is important for inflammatory gene expression. PMID:30526044
Siglec-1 Macrophages and the Contribution of IFN to the Development of Autoimmune Congenital Heart Block. PMID:30518570
Glucose intake hampers PKA-regulated HSP90 chaperone activity. PMID:30516470
Identification of Deregulated Signaling Pathways in Jurkat Cells in Response to a Novel Acylspermidine Analogue-N4-Erucoyl Spermidine. PMID:30515476
Identification of drug repurposing candidates based on a miRNA-mediated drug and pathway network for cardiac hypertrophy and acute myocardial infarction. PMID:30514363
The Genomic Architecture of Fowl Typhoid Resistance in Commercial Layers. PMID:30510562
Prognostic value of sorting nexin 10 weak expression in stomach adenocarcinoma revealed by weighted gene co-expression network analysis. PMID:30487700
Proteomics of Bronchoalveolar Lavage Fluid Reveals a Lung Oxidative Stress Response in Murine Herpesvirus-68 Infection. PMID:30486363
Diagnostic and prognostic values of the mRNA expression of excision repair cross-complementation enzymes in hepatitis B virus-related hepatocellular carcinoma. PMID:30464628
Deep proteome of human nNOS/NOS1-positive versus MOCK SH-SY5Y neuroblastoma cells under full nutrition, serum free starvation and rapamycin treatment. PMID:30456249
A Proteomic Approach for Understanding the Mechanisms of Delayed Corneal Wound Healing in Diabetic Keratopathy Using Diabetic Model Rat. PMID:30453691
Deciphering the evolutionary signatures of pinnipeds using novel genome sequences: The first genomes of Phoca largha, Callorhinus ursinus, and Eumetopias jubatus. PMID:30442995
Transcriptomic changes with increasing algal symbiont reveal the detailed process underlying establishment of coral-algal symbiosis. PMID:30429501
Identification of hub genes with diagnostic values in pancreatic cancer by bioinformatics analyses and supervised learning methods. PMID:30428899
Data set of differentially expressed microRNAs in sanguinarine-treated Caenorhabditis elegans and its F3 progeny. PMID:30426043
Short-lived AUF1 p42-binding mRNAs of RANKL and BCL6 have two distinct instability elements each. PMID:30418981
Prognostic Value of Excision Repair Cross-Complementing mRNA Expression in Gastric Cancer. PMID:30417012
The Overexpression of CD80 and ISG15 Are Associated with the Progression and Metastasis of Breast Cancer by a Meta-Analysis Integrating Three Microarray Datasets. PMID:30411299
Integrated whole genome microarray analysis and immunohistochemical assay identifies COL11A1, GJB2 and CTRL as predictive biomarkers for pancreatic cancer. PMID:30410422
Regulatory sRNAs in Cyanobacteria. PMID:30405542
Exploring Pharmacological Mechanisms of Xuefu Zhuyu Decoction in the Treatment of Traumatic Brain Injury via a Network Pharmacology Approach. PMID:30402137
Ensemble learning for detecting gene-gene interactions in colorectal cancer. PMID:30397551
Impact of Escherichia coli K12 and O18:K1 on human platelets: Differential effects on platelet activation, RNAs and proteins. PMID:30385858
Network pharmacology-based strategy to investigate pharmacological mechanisms of Zuojinwan for treatment of gastritis. PMID:30382864
Zygotic gene activation in the chicken occurs in two waves, the first involving only maternally derived genes. PMID:30375976
Extraction and biomolecular analysis of dermal interstitial fluid collected with hollow microneedles. PMID:30374463
Characterization of kinase gene expression and splicing profile in prostate cancer with RNA-Seq data. PMID:30367578
Genomic and Transcriptomic Basis of Hanseniaspora vineae's Impact on Flavor Diversity and Wine Quality. PMID:30366992
miRNA array analysis of plasma miRNA alterations in rats exposed to a high altitude hypoxic environment. PMID:30365091
Sirtuin 3 attenuates amyloid-β induced neuronal hypometabolism. PMID:30362958
The cellular economy of the Saccharomyces cerevisiae zinc proteome. PMID:30358795
Aberrant splicing in B-cell acute lymphoblastic leukemia. PMID:30357359
Overexpression of Chicken IRF7 Increased Viral Replication and Programmed Cell Death to the Avian Influenza Virus Infection Through TGF-Beta/FoxO Signaling Axis in DF-1. PMID:30356848
Thyroid hormone influences brain gene expression programs and behaviors in later generations by altering germ line epigenetic information. PMID:30356120
Effects of propofol and etomidate anesthesia on cardiovascular miRNA expression: the different profiles? PMID:30352555
Targeting histone methyltransferase G9a inhibits growth and Wnt signaling pathway by epigenetically regulating HP1α and APC2 gene expression in non-small cell lung cancer. PMID:30348169
A new experimental platform facilitates assessment of the transcriptional and chromatin landscapes of aging yeast. PMID:30334737
Absence of Mutation Enrichment for Genes Phylogenetically Conserved in the Olivocerebellar Motor Circuitry in a Cohort of Canadian Essential Tremor Cases. PMID:30315477
De novo Mutations (DNMs) in Autism Spectrum Disorder (ASD): Pathway and Network Analysis. PMID:30298087
Maternal Melatonin Therapy Attenuates Methyl-Donor Diet-Induced Programmed Hypertension in Male Adult Rat Offspring. PMID:30279341
Transcriptomes of cochlear inner and outer hair cells from adult mice. PMID:30277483
Silencing of TGFβ signalling in microglia results in impaired homeostasis. PMID:30275444
Identification of COL1A1 as an invasion‑related gene in malignant astrocytoma. PMID:30272346
Gene expression differences between thyroid carcinoma, thyroid adenoma and normal thyroid tissue. PMID:30272326
Multi-omics integrative analysis with genome-scale metabolic model simulation reveals global cellular adaptation of Aspergillus niger under industrial enzyme production condition. PMID:30258063
Fenretinide targeting of human colon cancer sphere cells through cell cycle regulation and stress-responsive activities. PMID:30250604
Identification of six key miRNAs associated with breast cancer through screening large-scale microarray data. PMID:30250531
Impaired Notch Signaling Leads to a Decrease in p53 Activity and Mitotic Catastrophe in Aged Muscle Stem Cells. PMID:30244867
Suppression of myopathic lamin mutations by muscle-specific activation of AMPK and modulation of downstream signaling. PMID:30239736
SMART Cancer Navigator: A Framework for Implementing ASCO Workshop Recommendations to Enable Precision Cancer Medicine. PMID:30238071
Biomarker identification of thyroid associated ophthalmopathy using microarray data. PMID:30225222
The sbv IMPROVER Systems Toxicology Computational Challenge: Identification of Human and Species-Independent Blood Response Markers as Predictors of Smoking Exposure and Cessation Status. PMID:30221212
Screening of genes associated with inflammatory responses in the endolymphatic sac reveals underlying mechanisms for autoimmune inner ear diseases. PMID:30210597
Urinary proteomics reveals association between pediatric nephrolithiasis and cardiovascular disease. PMID:30209738
Differential Co-expression and Regulatory Network Analysis Uncover the Relapse Factor and Mechanism of T Cell Acute Leukemia. PMID:30195757
Global Long Noncoding RNA and mRNA Expression Changes between Prenatal and Neonatal Lung Tissue in Pigs. PMID:30189656
Identification of key pathways and genes in response to trastuzumab treatment in breast cancer using bioinformatics analysis. PMID:30181805
Transcriptome sequencing reveals key potential long non-coding RNAs related to duration of fertility trait in the uterovaginal junction of egg-laying hens. PMID:30181614
Unravelling subclonal heterogeneity and aggressive disease states in TNBC through single-cell RNA-seq. PMID:30181541
Andrographolide Sulfonate Attenuates Acute Lung Injury by Reducing Expression of Myeloperoxidase and Neutrophil-Derived Proteases in Mice. PMID:30174607
Correcting the Mean-Variance Dependency for Differential Variability Testing Using Single-Cell RNA Sequencing Data. PMID:30172840
Integrated analysis of a competing endogenous RNA network reveals key lncRNAs as potential prognostic biomarkers for human bladder cancer. PMID:30170380
Co-expression Network Analysis of Biomarkers for Adrenocortical Carcinoma. PMID:30158955
Circular RNAs hsa_circ_0032462, hsa_circ_0028173, hsa_circ_0005909 are predicted to promote CADM1 expression by functioning as miRNAs sponge in human osteosarcoma. PMID:30153287
Identification of key genes and pathways using bioinformatics analysis in septic shock children. PMID:30147344
Potential role of LINC00996 in colorectal cancer: a study based on data mining and bioinformatics. PMID:30147336
Integrative epigenomic analysis in differentiated human primary bronchial epithelial cells exposed to cigarette smoke. PMID:30143676
Mutant KLF1 in Adult Anemic Nan Mice Leads to Profound Transcriptome Changes and Disordered Erythropoiesis. PMID:30143664
RAP2 mediates mechanoresponses of the Hippo pathway. PMID:30135582
Comparative Secretome Analyses of Primary Murine White and Brown Adipocytes Reveal Novel Adipokines. PMID:30135203
Transcriptional response of honey bee (Apis mellifera) to differential nutritional status and Nosema infection. PMID:30134827
Identification of protein complexes associated with myocardial infarction using a bioinformatics approach. PMID:30132549
Bioinformatics analyses of significant genes, related pathways and candidate prognostic biomarkers in glioblastoma. PMID:30132538
Super-enhancers maintain renin-expressing cell identity and memory to preserve multi-system homeostasis. PMID:30130256
Comprehensive analysis of the whole coding and non-coding RNA transcriptome expression profiles and construction of the circRNA-lncRNA co-regulated ceRNA network in laryngeal squamous cell carcinoma. PMID:30128795
Epigenetic regulation of the circadian gene Per1 contributes to age-related changes in hippocampal memory. PMID:30127461
Malignant canine mammary epithelial cells shed exosomes containing differentially expressed microRNA that regulate oncogenic networks. PMID:30126376
A novel gene-diet pair modulates C. elegans aging. PMID:30125273
Analysis of the miRNA and mRNA involved in osteogenesis of adipose-derived mesenchymal stem cells. PMID:30116362
Identification of H4K20me3- and H3K4me3-associated RNAs using CARIP-Seq expands the transcriptional and epigenetic networks of embryonic stem cells. PMID:30115682
Identification of target genes in cardiomyopathy with fibrosis and cardiac remodeling. PMID:30115125
Identification of key genes and pathways for esophageal squamous cell carcinoma by bioinformatics analysis. PMID:30112053
Tetraspanin family identified as the central genes detected in gastric cancer using bioinformatics analysis. PMID:30106120
Analysis of differentially expressed genes among human hair follicle-derived iPSCs, induced hepatocyte-like cells, and primary hepatocytes. PMID:30092828
Analysis of diet-induced differential methylation, expression, and interactions of lncRNA and protein-coding genes in mouse liver. PMID:30069000
Comparative transcriptomics reveals specific responding genes associated with atherosclerosis in rabbit and mouse models. PMID:30067832
Messenger RNA Sequencing and Pathway Analysis Provide Novel Insights Into the Susceptibility to Salmonella enteritidis Infection in Chickens. PMID:30061915
In vivo identification of Bmp2-correlation networks during fracture healing by means of a limb-specific conditional inactivation of Bmp2. PMID:30048819
Determination of system level alterations in host transcriptome due to Zika virus (ZIKV) Infection in retinal pigment epithelium. PMID:30046058
Association Analysis between Body Mass Index and Genomic DNA Methylation across 15 Major Cancer Types. PMID:30026852
Distinct Diagnostic and Prognostic Values of Minichromosome Maintenance Gene Expression in Patients with Hepatocellular Carcinoma. PMID:30026832
Inhibiting the integrated stress response pathway prevents aberrant chondrocyte differentiation thereby alleviating chondrodysplasia. PMID:30024379
Bioinformatics approach reveals the key role of C‑X‑C motif chemokine receptor 2 in endometriosis development. PMID:30015967
Comprehensive analysis of gene expression profiles provides insight into the pathogenesis of Crohn's disease. PMID:30015893
Candidate gene and mechanism investigations in congenital obstructive nephropathy based on bioinformatics analysis. PMID:30015886
Candidate genes and microRNAs for glioma pathogenesis and prognosis based on gene expression profiles. PMID:30015885
Hub genes and key pathways of non-small lung cancer identified using bioinformatics. PMID:30008938
Identification of Schizosaccharomyces pombe in the guts of healthy individuals and patients with colorectal cancer: preliminary evidence from a gut microbiome secretome study. PMID:30008808
Identification of hub genes and potential molecular mechanisms in gastric cancer by integrated bioinformatics analysis. PMID:30002985
Plasma proteomic signature of age in healthy humans. PMID:29992704
A vascular endothelial growth factor receptor gene variant is associated with susceptibility to acute respiratory distress syndrome. PMID:29987654
A diet defined by its content of bovine milk exosomes and their RNA cargos has moderate effects on gene expression, amino acid profiles and grip strength in skeletal muscle in C57BL/6 mice. PMID:29986306
Poly(ADP-ribosyl)ation associated changes in CTCF-chromatin binding and gene expression in breast cells. PMID:29981477
Expression and network analysis of YBX1 interactors for identification of new drug targets in lung adenocarcinoma. PMID:29973960
A novel gene-expression-signature-based model for prediction of response to Tripterysium glycosides tablet for rheumatoid arthritis patients. PMID:29973208
Placental H3K27me3 establishes female resilience to prenatal insults. PMID:29967448
Cell-type-specific brain methylomes profiled via ultralow-input microfluidics. PMID:29963329
Analysis of the complex interaction of CDR1as-miRNA-protein and detection of its novel role in melanoma. PMID:29963195
Identification of a noncoding RNA‑mediated gene pair‑based regulatory module in Alzheimer's disease. PMID:29956760
A Possible Mechanism: Vildagliptin Prevents Aortic Dysfunction through Paraoxonase and Angiopoietin-Like 3. PMID:29951533
In silico approach in reveal traditional medicine plants pharmacological material basis. PMID:29946351
Stable STIM1 Knockdown in Self-Renewing Human Neural Precursors Promotes Premature Neural Differentiation. PMID:29942250
Key Genes and Pathways Associated With Inner Ear Malformation in SOX10 p.R109W Mutation Pigs. PMID:29922125
Identification of hub genes with prognostic values in gastric cancer by bioinformatics analysis. PMID:29921304
Transcriptome alteration in Phytophthora infestans in response to phenazine-1-carboxylic acid production by Pseudomonas fluorescens strain LBUM223. PMID:29914352
Leukemia cell-derived microvesicles induce T cell exhaustion via miRNA delivery. PMID:29900066
Detecting the Population Structure and Scanning for Signatures of Selection in Horses (Equus caballus) From Whole-Genome Sequencing Data. PMID:29899660
Cell type-specific analysis of transcriptome changes in the porcine endometrium on Day 12 of pregnancy. PMID:29898663
Integrated analysis of long noncoding RNA and mRNA expression profile in children with obesity by microarray analysis. PMID:29884798
TAM 2.0: tool for MicroRNA set analysis. PMID:29878154
Integrative Analysis of Hippocampus Gene Expression Profiles Identifies Network Alterations in Aging and Alzheimer's Disease. PMID:29875655
Comprehending a Killer: The Akt/mTOR Signaling Pathways Are Temporally High-Jacked by the Highly Pathogenic 1918 Influenza Virus. PMID:29866590
Systems Pharmacology Dissection of Traditional Chinese Medicine Wen-Dan Decoction for Treatment of Cardiovascular Diseases. PMID:29861771
Somatic mutations in early onset luminal breast cancer. PMID:29854292
Identification of key genes in rheumatoid arthritis and osteoarthritis based on bioinformatics analysis. PMID:29851858
Alternative splicing events implicated in carcinogenesis and prognosis of colorectal cancer. PMID:29805701
Screening therapeutic targets of ribavirin in hepatocellular carcinoma. PMID:29805683
Exploration of the molecular mechanisms of cervical cancer based on mRNA expression profiles and predicted microRNA interactions. PMID:29805632
Identification of potential pathogenic biomarkers in clear cell renal cell carcinoma. PMID:29805586
Systemic bioinformatics analysis of skeletal muscle gene expression profiles of sepsis. PMID:29805480
ATG5 overexpression is neuroprotective and attenuates cytoskeletal and vesicle-trafficking alterations in axotomized motoneurons. PMID:29799519
Sertoli cell-specific ablation of miR-17-92 cluster significantly alters whole testis transcriptome without apparent phenotypic effects. PMID:29795630
Reconstruction of the diapsid ancestral genome permits chromosome evolution tracing in avian and non-avian dinosaurs. PMID:29784931
Hyaluronic Acid Influence on Normal and Osteoarthritic Tissue-Engineered Cartilage. PMID:29783732
Modulation of transcriptional activity in brain lower grade glioma by alternative splicing. PMID:29780667
A map of the PGC-1α- and NT-PGC-1α-regulated transcriptional network in brown adipose tissue. PMID:29777200
Comprehensive and integrative analysis identifies microRNA-106 as a novel non-invasive biomarker for detection of gastric cancer. PMID:29764446
Ouroboros resembling competitive endogenous loop (ORCEL) in circular RNAs revealed through transcriptome sequencing dataset analysis. PMID:29764361
Identification of potential crucial genes and construction of microRNA-mRNA negative regulatory networks in osteosarcoma. PMID:29760609
Comprehensive analysis of a long noncoding RNA-associated competing endogenous RNA network in colorectal cancer. PMID:29760555
The novel 19q13 KRAB zinc-finger tumour suppressor ZNF382 is frequently methylated in oesophageal squamous cell carcinoma and antagonises Wnt/β-catenin signalling. PMID:29760376
Comparison of Hepatic NRF2 and Aryl Hydrocarbon Receptor Binding in 2,3,7,8-Tetrachlorodibenzo-p-dioxin-Treated Mice Demonstrates NRF2-Independent PKM2 Induction. PMID:29752288
Genome‑wide DNA methylation profiling in a rat model with vascular dementia. PMID:29749552
A gene interaction network‑based method to measure the common and heterogeneous mechanisms of gynecological cancer. PMID:29749503
KDM5B decommissions the H3K4 methylation landscape of self-renewal genes during trophoblast stem cell differentiation. PMID:29748167
Identification of novel drug targets for diamond-blackfan anemia based on RPS19 gene mutation using protein-protein interaction network. PMID:29745857
Gene expression profiles and pathway enrichment analysis of human osteosarcoma cells exposed to sorafenib. PMID:29744300
Diverse reprogramming codes for neuronal identity. PMID:29743677
Chemical proteomic profiling of protein N-homocysteinylation with a thioester probe. PMID:29732068
Alpha-linolenic acid and linoleic acid differentially regulate the skeletal muscle secretome of obese Zucker rats. PMID:29727591
Splicing Factor RBM20 Regulates Transcriptional Network of Titin Associated and Calcium Handling Genes in The Heart. PMID:29725258
Identification of Biomarkers Associated With Pathological Stage and Prognosis of Clear Cell Renal Cell Carcinoma by Co-expression Network Analysis. PMID:29720944
Identification of key gene modules for human osteosarcoma by co-expression analysis. PMID:29720180
Prognostic significance of microsatellite instability‑associated pathways and genes in gastric cancer. PMID:29717769
Metabolic systems analysis of LPS induced endothelial dysfunction applied to sepsis patient stratification. PMID:29717213
Credentialing Individual Samples for Proteogenomic Analysis. PMID:29716986
Identification of four differentially methylated genes as prognostic signatures for stage I lung adenocarcinoma. PMID:29713243
Identification of potential prognostic microRNA biomarkers for predicting survival in patients with hepatocellular carcinoma. PMID:29713196
Sauchinone controls hepatic cholesterol homeostasis by the negative regulation of PCSK9 transcriptional network. PMID:29712938
Galactic Cosmic Radiation Induces Persistent Epigenome Alterations Relevant to Human Lung Cancer. PMID:29712937
Bayesian nonparametric discovery of isoforms and individual specific quantification. PMID:29703885
Histone H4 acetylation regulates behavioral inter-individual variability in zebrafish. PMID:29695303
Comparative proteomic analyses of human adipose extracellular matrices decellularized using alternative procedures. PMID:29693792
Synergistic co-regulation and competition by a SOX9-GLI-FOXA phasic transcriptional network coordinate chondrocyte differentiation transitions. PMID:29659575
Combined bioinformatics analysis reveals gene expression and DNA methylation patterns in osteoarthritis. PMID:29658578
Evaluation of Animal Models by Comparison with Human Late-Onset Alzheimer's Disease. PMID:29656362
Independent prognostic genes and mechanism investigation for colon cancer. PMID:29653552
UXT is required for spermatogenesis in mice. PMID:29649254
Transcriptome Profile in Unilateral Adrenalectomy-Induced Compensatory Adrenal Growth in the Rat. PMID:29642441
Calorie restriction is the most reasonable anti-ageing intervention: a meta-analysis of survival curves. PMID:29636552
Identification of Novel Response and Predictive Biomarkers to Hsp90 Inhibitors Through Proteomic Profiling of Patient-derived Prostate Tumor Explants. PMID:29632047
Identification of Prognostic Biomarkers by Combined mRNA and miRNA Expression Microarray Analysis in Pancreatic Cancer. PMID:29631214
Involvement of dysregulated coding and long non‑coding RNAs in the pathogenesis of strabismus. PMID:29620205
STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers. PMID:29616079
Transcriptomic analysis reveals inflammatory and metabolic pathways that are regulated by renal perfusion pressure in the outer medulla of Dahl-S rats. PMID:29602296
Reprogramming of the estrogen responsive transcriptome contributes to tamoxifen-dependent protection against tumorigenesis in the p53 null mammary epithelial cells. PMID:29590203
Interpretation of biological experiments changes with evolution of the Gene Ontology and its annotations. PMID:29572502
Long non-coding RNAs RP5-821D11.7, APCDD1L-AS1 and RP11-277P12.9 were associated with the prognosis of lung squamous cell carcinoma. PMID:29568882
The Potential Protective Effect of Curcumin on Amyloid-β-42 Induced Cytotoxicity in HT-22 Cells. PMID:29568765
Impaired Mitochondrial Energetics Characterize Poor Early Recovery of Muscle Mass Following Hind Limb Unloading in Old Mice. PMID:29562317
Genome-Wide Identification and Characterization of Long Non-Coding RNA in Wheat Roots in Response to Ca2+ Channel Blocker. PMID:29559983
Identification of key genes and pathways in human clear cell renal cell carcinoma (ccRCC) by co-expression analysis. PMID:29559845
Gastric cancer biomarkers; A systems biology approach. PMID:29556568
Exploring the Mechanism of Dangguiliuhuang Decoction Against Hepatic Fibrosis by Network Pharmacology and Experimental Validation. PMID:29556199
Mitochondrial-related consequences of heat stress exposure during bovine oocyte maturation persist in early embryo development. PMID:29553057
Prognostic value of alcohol dehydrogenase mRNA expression in gastric cancer. PMID:29552190
Exploring the Molecular Mechanism of Thoracic Aortic Aneurysm via Bioinformatics Analysis. PMID:29538353
Thyroid follicular adenomas and carcinomas: molecular profiling provides evidence for a continuous evolution. PMID:29535811
Hepatitis C virus core impacts expression of miR122 and miR204 involved in carcinogenic progression via regulation of TGFBRAP1 and HOTTIP expression. PMID:29535540
Identification of key differentially expressed genes associated with non‑small cell lung cancer by bioinformatics analyses. PMID:29532892
Identification of key genes of papillary thyroid cancer using integrated bioinformatics analysis. PMID:29520684
Extracellular vesicle RNAs reflect placenta dysfunction and are a biomarker source for preterm labour. PMID:29516617
Anticancer activity of biogenerated silver nanoparticles: an integrated proteomic investigation. PMID:29515763
Identification of genes and pathways associated with MDR in MCF-7/MDR breast cancer cells by RNA-seq analysis. PMID:29512753
Identification of key genes and long non‑coding RNAs in celecoxib‑treated lung squamous cell carcinoma cell line by RNA‑sequencing. PMID:29512696
A standardized fold change method for microarray differential expression analysis used to reveal genes involved in acute rejection in murine allograft models. PMID:29511625
JAK/STAT3 regulated global gene expression dynamics during late-stage reprogramming process. PMID:29510661
The Coordinated Activities of nAChR and Wnt Signaling Regulate Intestinal Stem Cell Function in Mice. PMID:29510587
Vitamin C alters the amount of specific endoplasmic reticulum associated proteins involved in lipid metabolism in the liver of mice synthesizing a nonfunctional Werner syndrome (Wrn) mutant protein. PMID:29494634
It is time to apply biclustering: a comprehensive review of biclustering applications in biological and biomedical data. PMID:29490019
Elementary screening of lymph node metastatic-related genes in gastric cancer based on the co-expression network of messenger RNA, microRNA and long non-coding RNA. PMID:29489999
The Histone Variant MacroH2A Blocks Cellular Reprogramming by Inhibiting Mesenchymal-to-Epithelial Transition. PMID:29483300
Thermopriming triggers splicing memory in Arabidopsis. PMID:29474581
Identification of Three Rheumatoid Arthritis Disease Subtypes by Machine Learning Integration of Synovial Histologic Features and RNA Sequencing Data. PMID:29468833
Characterization and metabolic synthetic lethal testing in a new model of SDH-loss familial pheochromocytoma and paraganglioma. PMID:29464059
Effects of a wide range of dietary forage-to-concentrate ratios on nutrient utilization and hepatic transcriptional profiles in limit-fed Holstein heifers. PMID:29454312
Circulating miRNA Profiles Associated With Hyperglycemia in Patients With Type 1 Diabetes. PMID:29453204
The Mechanisms of Bushen-Yizhi Formula as a Therapeutic Agent against Alzheimer's Disease. PMID:29449587
Liraglutide protects cardiac function in diabetic rats through the PPARα pathway. PMID:29440457
α-Tocopherol succinate enhances pterostilbene anti-tumor activity in human breast cancer cells in vivo and in vitro. PMID:29435127
Screening of FOXD3 targets in lung cancer via bioinformatics analysis. PMID:29435060
Bioinformatics identification of dysregulated microRNAs in triple negative breast cancer based on microRNA expression profiling. PMID:29435032
Bioinformatical analysis of gene expression signatures of different glioma subtypes. PMID:29435008
Identification of common key genes in breast, lung and prostate cancer and exploration of their heterogeneous expression. PMID:29434863
GSHR, a Web-Based Platform Provides Gene Set-Level Analyses of Hormone Responses in Arabidopsis. PMID:29416546
RNA-seq transcriptomic analysis of adult zebrafish inner ear hair cells. PMID:29406519
BMI1 regulates androgen receptor in prostate cancer independently of the polycomb repressive complex 1. PMID:29402932
Construction of a Transcriptome-Driven Network at the Early Stage of Infection with Influenza A H1N1 in Human Lung Alveolar Epithelial Cells. PMID:29401570
Rbfox Splicing Factors Promote Neuronal Maturation and Axon Initial Segment Assembly. PMID:29398366
Cell death mechanisms of the anti-cancer drug etoposide on human cardiomyocytes isolated from pluripotent stem cells. PMID:29397400
RNentropy: an entropy-based tool for the detection of significant variation of gene expression across multiple RNA-Seq experiments. PMID:29390085
Gene Expression Analysis Reveals Novel Shared Gene Signatures and Candidate Molecular Mechanisms between Pemphigus and Systemic Lupus Erythematosus in CD4+ T Cells. PMID:29387060
Biomarkers identification for acute myocardial infarction detection via weighted gene co-expression network analysis. PMID:29381915
The Effect of Mammary Extracellular Matrix in Controlling Oral and Mammary Cancer Cells. PMID:29373893
Revealing the action mechanisms of dexamethasone on the birth weight of infant using RNA-sequencing data of trophoblast cells. PMID:29369181
N-glycome of the Lysosomal Glycocalyx is Altered in Niemann-Pick Type C Disease (NPC) Model Cells. PMID:29367433
The Identification of Key Genes and Pathways in Glioma by Bioinformatics Analysis. PMID:29362722
Widespread modulation of gene expression by copy number variation in skeletal muscle. PMID:29362391
Use of DAVID algorithms for clustering custom annotated gene lists in a non-model organism, rainbow trout. PMID:29361978
Population-based dose-response analysis of liver transcriptional response to trichloroethylene in mouse. PMID:29353386
T lymphocytes facilitate brain metastasis of breast cancer by inducing Guanylate-Binding Protein 1 expression. PMID:29350274
Identifying Novel Signaling Pathways: An Exercise Scientists Guide to Phosphoproteomics. PMID:29346157
Atherosclerosis is exacerbated by chitinase-3-like-1 in amyloid precursor protein transgenic mice. PMID:29344304
The GPR120 agonist TUG-891 promotes metabolic health by stimulating mitochondrial respiration in brown fat. PMID:29343498
Immune-Related Transcriptional Responses to Parasitic Infection in a Naturally Inbred Fish: Roles of Genotype and Individual Variation. PMID:29340582
Analysis of serum microRNA expression in male workers with occupational noise-induced hearing loss. PMID:29340520
Learning-dependent chromatin remodeling highlights noncoding regulatory regions linked to autism. PMID:29339533
Zinc transporter Slc39a8 is essential for cardiac ventricular compaction. PMID:29337306
Gene and MicroRNA Perturbations of Cellular Response to Pemetrexed Implicate Biological Networks and Enable Imputation of Response in Lung Adenocarcinoma. PMID:29335598
Investigation into the underlying molecular mechanisms of hypertensive nephrosclerosis using bioinformatics analyses. PMID:29328390
Integrated sequencing of exome and mRNA of large-sized single cells. PMID:29321653
Quantitative Analysis of Cellular Proteome Alterations in CDV-Infected Mink Lung Epithelial Cells. PMID:29312244
Boolean network modeling in systems pharmacology. PMID:29307099
Dengue virus causes changes of MicroRNA-genes regulatory network revealing potential targets for antiviral drugs. PMID:29301573
Maternal chromium restriction induces insulin resistance in adult mice offspring through miRNA. PMID:29286159
Identification of key miRNA-gene pairs in chronic lymphocytic leukemia through integrated analysis of mRNA and miRNA microarray. PMID:29285196
Transcriptome signature identifies distinct cervical pathways induced in lipopolysaccharide-mediated preterm birth. PMID:29281003
A next generation sequencing based approach to identify extracellular vesicle mediated mRNA transfers between cells. PMID:29273013
Nup98 recruits the Wdr82-Set1A/COMPASS complex to promoters to regulate H3K4 trimethylation in hematopoietic progenitor cells. PMID:29269482
Identification of differential protein-coding gene expressions in early phase lung adenocarcinoma. PMID:29266838
Pathogenic landscape of idiopathic male infertility: new insight towards its regulatory networks. PMID:29263816
Twenty‑four signature genes predict the prognosis of oral squamous cell carcinoma with high accuracy and repeatability. PMID:29257303
Serum microRNA array analysis identifies miR-140-3p, miR-33b-3p and miR-671-3p as potential osteoarthritis biomarkers involved in metabolic processes. PMID:29255496
Transcriptomic pathway analysis of urokinase receptor silenced breast cancer cells: a microarray study. PMID:29254187
Co-expression Network Approach Reveals Functional Similarities among Diseases Affecting Human Skeletal Muscle. PMID:29249983
Orthogonality and Burdens of Heterologous AND Gate Gene Circuits in E. coli. PMID:29240998
Selection for long and short sleep duration in Drosophila melanogaster reveals the complex genetic network underlying natural variation in sleep. PMID:29240764
Novel linear motif filtering protocol reveals the role of the LC8 dynein light chain in the Hippo pathway. PMID:29240760
Identification of Key Genes and Pathways in Tongue Squamous Cell Carcinoma Using Bioinformatics Analysis. PMID:29240723
Discovery and Mechanistic Elucidation of a Class of Protein Disulfide Isomerase Inhibitors for the Treatment of Glioblastoma. PMID:29235250
Genome-Wide Association Study of Piglet Uniformity and Farrowing Interval. PMID:29234349
A Microarray Study of Carpet-Shell Clam (Ruditapes decussatus) Shows Common and Organ-Specific Growth-Related Gene Expression Differences in Gills and Digestive Gland. PMID:29234285
E2F/DP Prevents Cell-Cycle Progression in Endocycling Fat Body Cells by Suppressing dATM Expression. PMID:29233476
AP-2α and AP-2β cooperatively orchestrate homeobox gene expression during branchial arch patterning. PMID:29229773
Prenatal Exposure to Bisphenol A Disrupts Naturally Occurring Bimodal DNA Methylation at Proximal Promoter of fggy, an Obesity-Relevant Gene Encoding a Carbohydrate Kinase, in Gonadal White Adipose Tissues of CD-1 Mice. PMID:29220483
In-Cardiome: integrated knowledgebase for coronary artery disease enabling translational research. PMID:29220465
ciaR impacts biofilm formation by regulating an arginine biosynthesis pathway in Streptococcus sanguinis SK36. PMID:29215019
A novel correlation between ATP5A1 gene expression and progression of human clear cell renal cell carcinoma identified by co‑expression analysis. PMID:29207195
OCDD: an obesity and co-morbid disease database. PMID:29201145
Identification of Key Genes in Colorectal Cancer Regulated by miR-34a. PMID:29197895
Shotgun label-free proteomic analysis for identification of proteins in HaCaT human skin keratinocytes regulated by the administration of collagen from soft-shelled turtle. PMID:29193735
Differential prioritization of therapies to subtypes of triple negative breast cancer using a systems medicine method. PMID:29190967
Computational systems biology approaches for Parkinson's disease. PMID:29185073
First gene-ontology enrichment analysis based on bacterial coregenome variants: insights into adaptations of Salmonella serovars to mammalian- and avian-hosts. PMID:29183286
In silico-based screen synergistic drug combinations from herb medicines: a case using Cistanche tubulosa. PMID:29180652
Evidence of high-altitude adaptation in the glyptosternoid fish, Creteuchiloglanis macropterus from the Nujiang River obtained through transcriptome analysis. PMID:29169322
Integrative analysis of novel hypomethylation and gene expression signatures in glioblastomas. PMID:29163774
Exploration of the mechanism of colorectal cancer metastasis using microarray analysis. PMID:29163694
In vitro characterization of CD133lo cancer stem cells in Retinoblastoma Y79 cell line. PMID:29162051
Co-expression network analysis identified six hub genes in association with progression and prognosis in human clear cell renal cell carcinoma (ccRCC). PMID:29159069
A 16-gene signature predicting prognosis of patients with oral tongue squamous cell carcinoma. PMID:29158988
A Comparative Proteome Profile of Female Mouse Gonads Suggests a Tight Link between the Electron Transport Chain and Meiosis Initiation. PMID:29158290
Identification of potential tissue-specific cancer biomarkers and development of cancer versus normal genomic classifiers. PMID:29156751
Comparative transcriptomics of 5 high-altitude vertebrates and their low-altitude relatives. PMID:29149296
Knockdown of SIRT1 Suppresses Bladder Cancer Cell Proliferation and Migration and Induces Cell Cycle Arrest and Antioxidant Response through FOXO3a-Mediated Pathways. PMID:29147649
RNA-Sequencing of Drosophila melanogaster Head Tissue on High-Sugar and High-Fat Diets. PMID:29141990
Integrative microRNA and mRNA deep-sequencing expression profiling in endemic Burkitt lymphoma. PMID:29132323
sPAGM: inferring subpathway activity by integrating gene and miRNA expression-robust functional signature identification for melanoma prognoses. PMID:29127397
Deep sequencing and comprehensive expression analysis identifies several molecules potentially related to human poorly differentiated hepatocellular carcinoma. PMID:29123978
Impact of hormonal modulation at proestrus on ovarian responses and uterine gene expression of suckled anestrous beef cows. PMID:29118976
Histone methyltransferase G9a is a key regulator of the starvation-induced behaviors in Drosophila melanogaster. PMID:29116191
Gene expression profiles and protein‑protein interaction networks during tongue carcinogenesis in the tumor microenvironment. PMID:29115421
Identification of potential therapeutic targets for gliomas by bioinformatics analysis. PMID:29113156
Biomarker MicroRNAs for Diagnosis of Oral Squamous Cell Carcinoma Identified Based on Gene Expression Data and MicroRNA-mRNA Network Analysis. PMID:29098014
Antidepressant Mechanism Research of Acupuncture: Insights from a Genome-Wide Transcriptome Analysis of Frontal Cortex in Rats with Chronic Restraint Stress. PMID:29098013
PI3K and Inhibitor of Apoptosis Proteins Modulate Gentamicin- Induced Hair Cell Death in the Zebrafish Lateral Line. PMID:29093665
Identification of lncRNAs involved in biological regulation in early age-related macular degeneration. PMID:29089757
Identification of microRNA differentially expressed in three subtypes of non-small cell lung cancer and in silico functional analysis. PMID:29088807
Relevance of iPSC-derived human PGC-like cells at the surface of embryoid bodies to prechemotaxis migrating PGCs. PMID:29087313
Prognostic genes of breast cancer revealed by gene co-expression network analysis. PMID:29085450
Glycosylation-related gene expression in HT29-MTX-E12 cells upon infection by Helicobacter pylori. PMID:29085225
High rate of translocation-based gene birth on the Drosophila Y chromosome. PMID:29078298
Bivalent complexes of PRC1 with orthologs of BRD4 and MOZ/MORF target developmental genes in Drosophila. PMID:29070704
Screening and identification of critical transcription factors involved in the protection of cardiomyocytes against hydrogen peroxide-induced damage by Yixin-shu. PMID:29066842
Automated deconvolution of structured mixtures from heterogeneous tumor genomic data. PMID:29059177
Overexpression of COL3A1 confers a poor prognosis in human bladder cancer identified by co-expression analysis. PMID:29050298
SCPortalen: human and mouse single-cell centric database. PMID:29045713
Therapeutic potential of Bifidobacterium breve strain A1 for preventing cognitive impairment in Alzheimer's disease. PMID:29044140
Dynamic and Modularized MicroRNA Regulation and Its Implication in Human Cancers. PMID:29042600
Lactobacillus gasseri attenuates allergic airway inflammation through PPARγ activation in dendritic cells. PMID:29032406
Low-Grade Dysplastic Nodules Revealed as the Tipping Point during Multistep Hepatocarcinogenesis by Dynamic Network Biomarkers. PMID:29027943
Genome methylation and regulatory functions for hypoxic adaptation in Tibetan chicken embryos. PMID:29018624
Global transcriptome‑wide analysis of the function of GDDR in acute gastric lesions. PMID:28990076
Bioinformatics analysis of gene expression data for the identification of critical genes in breast invasive carcinoma. PMID:28990063
Circular RNA expression profiles and features in human tissues: a study using RNA-seq data. PMID:28984197
Autophagy-related gene expression is an independent prognostic indicator of glioma. PMID:28977840
Transcriptome analysis of genes involved in defense against alkaline stress in roots of wild jujube (Ziziphus acidojujuba). PMID:28976994
Altered global gene expression profiles in human gastrointestinal epithelial Caco2 cells exposed to nanosilver. PMID:28959546
Differential protein-coding gene and long noncoding RNA expression in smoking-related lung squamous cell carcinoma. PMID:28949095
Network analysis based on TCGA reveals hub genes in colon cancer. PMID:28947883
Network-based analysis of the molecular mechanisms of multiple myeloma and monoclonal gammopathy of undetermined significance. PMID:28943924
The highly expressed COL4A1 genes contributes to the proliferation and migration of the invasive ductal carcinomas. PMID:28938546
The non-canonical poly(A) polymerase FAM46C acts as an onco-suppressor in multiple myeloma. PMID:28931820
RNA-seq analysis of the kidneys of broiler chickens fed diets containing different concentrations of calcium. PMID:28924246
Effects of deoxynivalenol- and zearalenone-contaminated feed on the gene expression profiles in the kidneys of piglets. PMID:28920417
Phosphoproteomics reveals that glycogen synthase kinase-3 phosphorylates multiple splicing factors and is associated with alternative splicing. PMID:28916722
Large-scale cross-species chemogenomic platform proposes a new drug discovery strategy of veterinary drug from herbal medicines. PMID:28915268
Bioinformatics method identifies potential biomarkers of dilated cardiomyopathy in a human induced pluripotent stem cell-derived cardiomyocyte model. PMID:28912841
MCbiclust: a novel algorithm to discover large-scale functionally related gene sets from massive transcriptomics data collections. PMID:28911113
Induced Pluripotent Stem Cells: Advances in the Quest for Genetic Stability during Reprogramming Process. PMID:28902128
Screening candidate microRNA-mRNA regulatory pairs for predicting the response to chemoradiotherapy in rectal cancer by a bioinformatics approach. PMID:28900297
Canonical and non-canonical JAK/STAT transcriptional targets may be involved in distinct and overlapping cellular processes. PMID:28893190
MicroRNA-223 and microRNA-21 in peripheral blood B cells associated with progression of primary biliary cholangitis patients. PMID:28886078
Genomic characterization of chromosome translocations in patients with T/myeloid mixed-phenotype acute leukemia. PMID:28882084
Global transcriptional regulatory network for Escherichia coli robustly connects gene expression to transcription factor activities. PMID:28874552
Conditional deletion of ELL2 induces murine prostate intraepithelial neoplasia. PMID:28870994
Bi-directional and shared epigenomic signatures following proton and 56Fe irradiation. PMID:28860502
Neuroblastoma patient-derived xenograft cells cultured in stem-cell promoting medium retain tumorigenic and metastatic capacities but differentiate in serum. PMID:28860499
TSS-Seq analysis of low pH-induced gene expression in intercalated cells in the renal collecting duct. PMID:28859164
Main active constituent identification in Guanxinjing capsule, a traditional Chinese medicine, for the treatment of coronary heart disease complicated with depression. PMID:28858293
Time-series expression profile analysis of fracture healing in young and old mice. PMID:28849124
Investigating the mechanisms of papillary thyroid carcinoma using transcriptome analysis. PMID:28849102
Single nucleotide polymorphisms at miR-146a/196a2 and their primary ovarian insufficiency-related target gene regulation in granulosa cells. PMID:28841705
A network pharmacology-based strategy deciphers the underlying molecular mechanisms of Qixuehe Capsule in the treatment of menstrual disorders. PMID:28835770
Bioinformatics analysis of gene expression profiling for identification of potential key genes among ischemic stroke. PMID:28834871
Ancestry as a potential modifier of gene expression in breast tumors from Colombian women. PMID:28832682
A New Network-Based Strategy for Predicting the Potential miRNA-mRNA Interactions in Tumorigenesis. PMID:28831388
Protein microarray analysis identifies key cytokines associated with malignant middle cerebral artery infarction. PMID:28828208
MicroRNA expression analysis in endometriotic serum treated mesenchymal stem cells. PMID:28828000
Transcriptional dysregulation of Interferome in experimental and human Multiple Sclerosis. PMID:28827704
Differential alternative splicing coupled to nonsense-mediated decay of mRNA ensures dietary restriction-induced longevity. PMID:28824175
Deoxynivalenol- and zearalenone-contaminated feeds alter gene expression profiles in the livers of piglets. PMID:28823120
Silencing of HJURP induces dysregulation of cell cycle and ROS metabolism in bladder cancer cells via PPARγ-SIRT1 feedback loop. PMID:28819432
Titanium biomaterials with complex surfaces induced aberrant peripheral circadian rhythms in bone marrow mesenchymal stromal cells. PMID:28817668
The genomic architecture of mastitis resistance in dairy sheep. PMID:28814268
Aberrantly methylated-differentially expressed genes and pathways in colorectal cancer. PMID:28794688
Identification of the anticancer effects of a novel proteasome inhibitor, ixazomib, on colorectal cancer using a combined method of microarray and bioinformatics analysis. PMID:28790851
Effect of SMYD3 on the microRNA expression profile of MCF-7 breast cancer cells. PMID:28789418
Potential therapeutic targets and small molecular drugs for pediatric B-precursor acute lymphoblastic leukemia treatment based on microarray data. PMID:28789378
Time-series analysis in imatinib-resistant chronic myeloid leukemia K562-cells under different drug treatments. PMID:28786057
Analysis of biological functional networks during sciatic nerve repair and regeneration. PMID:28780753
The interplay of matrix metalloproteinase-8, transforming growth factor-β1 and vascular endothelial growth factor-C cooperatively contributes to the aggressiveness of oral tongue squamous cell carcinoma. PMID:28772283
T2DiACoD: A Gene Atlas of Type 2 Diabetes Mellitus Associated Complex Disorders. PMID:28761062
High-depth, high-accuracy microsatellite genotyping enables precision lung cancer risk classification. PMID:28759038
Transcriptome profiling of monocytes from XLA patients revealed the innate immune function dysregulation due to the BTK gene expression deficiency. PMID:28754963
Gene Expression Profiling of Advanced Penile Squamous Cell Carcinoma Receiving Cisplatin-based Chemotherapy Improves Prognostication and Identifies Potential Therapeutic Targets. PMID:28753783
AIM1 is an actin-binding protein that suppresses cell migration and micrometastatic dissemination. PMID:28747635
Virus and dsRNA-triggered transcriptional responses reveal key components of honey bee antiviral defense. PMID:28743868
Screening of the prognostic targets for breast cancer based co-expression modules analysis. PMID:28731166
Investigation of the molecular mechanisms underlying myotonic dystrophy types 1 and 2 cataracts using microRNA‑target gene networks. PMID:28731161
Exploration of the molecular mechanism of prostate cancer based on mRNA and miRNA expression profiles. PMID:28721073
MHC class II expression and potential antigen-presenting cells in the retina during experimental autoimmune uveitis. PMID:28720143
Circular RNA Profiling and Bioinformatic Modeling Identify Its Regulatory Role in Hepatic Steatosis. PMID:28717649
Systematic analysis of gene expression patterns associated with postmortem interval in human tissues. PMID:28710439
Associations between gene expression profiles of invasive breast cancer and Breast Imaging Reporting and Data System MRI lexicon. PMID:28706887
NRF2 deficiency replicates transcriptomic changes in Alzheimer's patients and worsens APP and TAU pathology. PMID:28704727
Diagnostic MicroRNA Biomarker Discovery for Non-Small-Cell Lung Cancer Adenocarcinoma by Integrative Bioinformatics Analysis. PMID:28698868
Modeling cancer driver events in vitro using barrier bypass-clonal expansion assays and massively parallel sequencing. PMID:28692054
Fish Oil Feeding Modulates the Expression of Hepatic MicroRNAs in a Western-Style Diet-Induced Nonalcoholic Fatty Liver Disease Rat Model. PMID:28691019
Transcriptome predictors of coral survival and growth in a highly variable environment. PMID:28690808
Interspecies NASH disease activity whole-genome profiling identifies a fibrogenic role of PPARα-regulated dermatopontin. PMID:28679947
Changes of Protein Turnover in Aging Caenorhabditis elegans. PMID:28679685
EWS-FLI1 perturbs MRTFB/YAP-1/TEAD target gene regulation inhibiting cytoskeletal autoregulatory feedback in Ewing sarcoma. PMID:28671673
Interactome analysis of gene expression profiles of cervical cancer reveals dysregulated mitotic gene clusters. PMID:28670392
Maternal chromium restriction modulates miRNA profiles related to lipid metabolism disorder in mice offspring. PMID:28669221
Oviductal transcriptional profiling of a bovine fertility model by next-generation sequencing. PMID:28664146
Comparative proteome analysis between C . briggsae embryos and larvae reveals a role of chromatin modification proteins in embryonic cell division. PMID:28655887
The Emerging Role of Zfp217 in Adipogenesis. PMID:28653987
Uterine responses to early pre-attachment embryos in the domestic dog and comparisons with other domestic animal species. PMID:28651344
Biological mechanisms discriminating growth rate and adult body weight phenotypes in two Chinese indigenous chicken breeds. PMID:28633640
Sequence analysis of chromosome 1 revealed different selection patterns between Chinese wild mice and laboratory strains. PMID:28631230
An Integrative Developmental Genomics and Systems Biology Approach to Identify an In Vivo Sox Trio-Mediated Gene Regulatory Network in Murine Embryos. PMID:28630873
Interaction of reactive astrocytes with type I collagen induces astrocytic scar formation through the integrin-N-cadherin pathway after spinal cord injury. PMID:28628111
Genetics of alcohol consumption in Drosophila melanogaster. PMID:28627812
Cardiac fibroblast transcriptome analyses support a role for interferogenic, profibrotic, and inflammatory genes in anti-SSA/Ro-associated congenital heart block. PMID:28626076
A hormonal cue promotes timely follicle cell migration by modulating transcription profiles. PMID:28610887
Effects of Radix Astragali and Its Split Components on Gene Expression Profiles Related to Water Metabolism in Rats with the Dampness Stagnancy due to Spleen Deficiency Syndrome. PMID:28607573
G9A performs important roles in the progression of breast cancer through upregulating its targets. PMID:28599414
Precision medicine for hepatocelluar carcinoma using molecular pattern diagnostics: results from a preclinical pilot study. PMID:28594404
Microarray profiling of long non-coding RNAs associated with idiopathic pulmonary arterial hypertension. PMID:28587327
Prognosis genes in gastric adenocarcinoma identified by cross talk genes in disease‑related pathways. PMID:28586067
Identification and functional analysis of the risk microRNAs associated with cerebral low-grade glioma prognosis. PMID:28586047
Error-prone DNA polymerase and oxidative stress increase the incidences of A to G mutations in tumors. PMID:28582771
Estrogen Receptor-β Modulation of the ERα-p53 Loop Regulating Gene Expression, Proliferation, and Apoptosis in Breast Cancer. PMID:28577282
Major hnRNP proteins act as general TDP-43 functional modifiers both in Drosophila and human neuronal cells. PMID:28575377
Comparative analysis of genes frequently regulated by drugs based on connectivity map transcriptome data. PMID:28575118
Downregulation of TRPM7 suppressed migration and invasion by regulating epithelial-mesenchymal transition in prostate cancer cells. PMID:28573641
Clinical and genomic responses to ultra-short course chemotherapy in spinal tuberculosis. PMID:28565753
Effects of genistein supplementation on genome‑wide DNA methylation and gene expression in patients with localized prostate cancer. PMID:28560383
Data for the generation of RNA spatiotemporal distributions and interpretation of Chk1 and SLBP protein depletion phenotypes during Drosophila embryogenesis. PMID:28560279
Krüppel-like factors compete for promoters and enhancers to fine-tune transcription. PMID:28541545
Combinatory Evaluation of Transcriptome and Metabolome Profiles of Low Temperature-induced Resistant Ascites Syndrome in Broiler Chickens. PMID:28539642
Identifying miRNA-mRNA regulation network of chronic pancreatitis based on the significant functional expression. PMID:28538367
Clinical Value and Prospective Pathway Signaling of MicroRNA-375 in Lung Adenocarcinoma: A Study Based on the Cancer Genome Atlas (TCGA), Gene Expression Omnibus (GEO) and Bioinformatics Analysis. PMID:28533502
Characterization of Cytosine Methylation and the DNA Methyltransferases of Toxoplasma gondii. PMID:28529454
CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer. PMID:28526714
Embryonic AP1 Transcription Factor Deficiency Causes a Collodion Baby-Like Phenotype. PMID:28526300
Candidate miRNAs and pathogenesis investigation for hepatocellular carcinoma based on bioinformatics analysis. PMID:28521446
Silencing TAK1 alters gene expression signatures in bladder cancer cells. PMID:28521404
Bioinformatic Analysis for Profiling Drug-induced Chromatin Modification Landscapes in Mouse Brain Using ChlP-seq Data. PMID:28516124
Application of a systems approach to study developmental gene regulation. PMID:28510076
Associating transcriptional modules with colon cancer survival through weighted gene co-expression network analysis. PMID:28486948
IGF2 mRNA binding protein 3 (IMP3) mediated regulation of transcriptome and translatome in glioma cells. PMID:28485999
STRIP2 Is Indispensable for the Onset of Embryonic Stem Cell Differentiation. PMID:28480311
Resolving stem and progenitor cells in the adult mouse incisor through gene co-expression analysis. PMID:28475038
Screening of Tumor Suppressor Genes in Metastatic Colorectal Cancer. PMID:28473981
Methods, Tools and Current Perspectives in Proteogenomics. PMID:28456751
Hyper-phosphorylation of Sequestosome-1 Distinguishes Resistance to Cisplatin in Patient Derived High Grade Serous Ovarian Cancer Cells. PMID:28455291
Identification of Key Genes Affecting Results of Hyperthermia in Osteosarcoma Based on Integrative ChIP-Seq/TargetScan Analysis. PMID:28453502
The Stearoyl-CoA Desaturase-1 (Desat1) in Drosophila cooperated with Myc to Induce Autophagy and Growth, a Potential New Link to Tumor Survival. PMID:28452935
Cell diversity and network dynamics in photosensitive human brain organoids. PMID:28445462
Identification of key genes associated with Schmid-type metaphyseal chondrodysplasia based on microarray data. PMID:28440393
Whole genome sequence association and ancestry-informed polygenic profile of EEG alpha in a Native American population. PMID:28436151
Disease biomarker identification from gene network modules for metastasized breast cancer. PMID:28432361
Comparative analysis of gene expression profiles for several migrating cell types identifies cell migration regulators. PMID:28428068
The effects of DLEU1 gene expression in Burkitt lymphoma (BL): potential mechanism of chemoimmunotherapy resistance in BL. PMID:28427156
SIRT7-dependent deacetylation of CDK9 activates RNA polymerase II transcription. PMID:28426094
iTRAQ-based quantitative proteomic analysis of Yamanaka factors reprogrammed breast cancer cells. PMID:28423718
Comparative Genomics of Glossina palpalis gambiensis and G. morsitans morsitans to Reveal Gene Orthologs Involved in Infection by Trypanosoma brucei gambiense. PMID:28421044
Exploring the molecular pathogenesis and biomarkers of high risk oral premalignant lesions on the basis of long noncoding RNA expression profiling by serial analysis of gene expression. PMID:28418939
5-methylcytosine promotes mRNA export - NSUN2 as the methyltransferase and ALYREF as an m5C reader. PMID:28418038
Clinical Value of miR-101-3p and Biological Analysis of its Prospective Targets in Breast Cancer: A Study Based on The Cancer Genome Atlas (TCGA) and Bioinformatics. PMID:28416776
Interaction of Epstein-Barr virus genes with human gastric carcinoma transcriptome. PMID:28415594
Identification of miRNA biomarkers of pneumonia using RNA-sequencing and bioinformatics analysis. PMID:28413462
Nucleosome repositioning during differentiation of a human myeloid leukemia cell line. PMID:28406749
Transcriptomic responses of the liver and adipose tissues to altered carbohydrate-fat ratio in diet: an isoenergetic study in young rats. PMID:28405243
ORIO (Online Resource for Integrative Omics): a web-based platform for rapid integration of next generation sequencing data. PMID:28402545
H3K4 demethylase KDM5B regulates global dynamics of transcription elongation and alternative splicing in embryonic stem cells. PMID:28402433
Human and Epstein-Barr Virus miRNA Profiling as Predictive Biomarkers for Endemic Burkitt Lymphoma. PMID:28400759
Toxicity of nano- and ionic silver to embryonic stem cells: a comparative toxicogenomic study. PMID:28399865
Bioinformatics analysis of gene expression alterations in microRNA‑122 knockout mice with hepatocellular carcinoma. PMID:28393247
Microarray‑based screening of differentially expressed genes in glucocorticoid‑induced avascular necrosis. PMID:28393228
Metallothionein 1G promotes the differentiation of HT-29 human colorectal cancer cells. PMID:28393194
Theoretical and Biological Evaluation of the Link between Low Exercise Capacity and Disease Risk. PMID:28389512
Omics Approaches to Identify Potential Biomarkers of Inflammatory Diseases in the Focal Adhesion Complex. PMID:28373027
Combinatorial Ranking of Gene Sets to Predict Disease Relapse: The Retinoic Acid Pathway in Early Prostate Cancer. PMID:28361034
Genome-wide gene expression profiling of tongue squamous cell carcinoma by RNA-seq. PMID:28357642
Proteome dynamics during postnatal mouse corpus callosum development. PMID:28349996
Dysregulation of MS risk genes and pathways at distinct stages of disease. PMID:28349074
Molecular Evidence for Differential Long-term Outcomes of Early Life Severe Acute Malnutrition. PMID:28330812
Recurrent rewiring and emergence of RNA regulatory networks. PMID:28320951
The effect of maternal chromium status on lipid metabolism in female elderly mice offspring and involved molecular mechanism. PMID:28320771
NaviGO: interactive tool for visualization and functional similarity and coherence analysis with gene ontology. PMID:28320317
The histone demethylase KDM3A, and its downstream target MCAM, promote Ewing Sarcoma cell migration and metastasis. PMID:28319067
Immunoproteomic identification and characterization of Ni2+-regulated proteins implicates Ni2+ in the induction of monocyte cell death. PMID:28300831
TFE3 regulates whole-body energy metabolism in cooperation with TFEB. PMID:28283651
Identification and characterization of differentially expressed miRNAs in subcutaneous adipose between Wagyu and Holstein cattle. PMID:28272430
Robust stratification of breast cancer subtypes using differential patterns of transcript isoform expression. PMID:28263985
Identification of prognostic genes in kidney renal clear cell carcinoma by RNA‑seq data analysis. PMID:28260099
Bioinformatics analysis on the differentiation of bone mesenchymal stem cells into osteoblasts and adipocytes. PMID:28260060
Microarray analysis of embryo-derived bovine pluripotent cells: The vulnerable state of bovine embryonic stem cells. PMID:28257460
SMYD5 regulates H4K20me3-marked heterochromatin to safeguard ES cell self-renewal and prevent spurious differentiation. PMID:28250819
Intrinsic Subtypes and Gene Expression Profiles in Primary and Metastatic Breast Cancer. PMID:28249905
Nuclear Compartmentalization Contributes to Stage-Specific Gene Expression Control in Trypanosoma cruzi. PMID:28243589
Analysis of gene expression changes associated with human carcinoma-associated fibroblasts in non-small cell lung carcinoma. PMID:28231844
Overexpression of hsa-miR-939 follows by NGFR down-regulation and apoptosis reduction. PMID:28229962
Distal CpG islands can serve as alternative promoters to transcribe genes with silenced proximal promoters. PMID:28223400
Circadian deep sequencing reveals stress-response genes that adopt robust rhythmic expression during aging. PMID:28221375
Human enterovirus 71 protein interaction network prompts antiviral drug repositioning. PMID:28220872
Genome-wide characterization of lncRNAs in acute myeloid leukemia. PMID:28203711
Effect of myeloid differentiation primary response gene 88 on expression profiles of genes during the development and progression of Helicobacter-induced gastric cancer. PMID:28201999
TAZ contributes to pulmonary fibrosis by activating profibrotic functions of lung fibroblasts. PMID:28195168
Control of immune ligands by members of a cytomegalovirus gene expansion suppresses natural killer cell activation. PMID:28186488
Var2GO: a web-based tool for gene variants selection. PMID:28185576
An Atlas of annotations of Hydra vulgaris transcriptome. PMID:28185543
Promiscuous DNA-binding of a mutant zinc finger protein corrupts the transcriptome and diminishes cell viability. PMID:28180284
Actinidia chinensis Planch root extract inhibits cholesterol metabolism in hepatocellular carcinoma through upregulation of PCSK9. PMID:28178673
Genome-scale analysis identifies GJB2 and ERO1LB as prognosis markers in patients with pancreatic cancer. PMID:28177904
The human RHOX gene cluster: target genes and functional analysis of gene variants in infertile men. PMID:28171660
Identification of four potential predicting miRNA biomarkers for multiple myeloma from published datasets. PMID:28168095
Dense genotyping of immune-related loci implicates host responses to microbial exposure in Behçet's disease susceptibility. PMID:28166214
Expression profiling of colorectal cancer cells reveals inhibition of DNA replication licensing by extracellular calcium. PMID:28161520
Activated Platelets Induce Endothelial Cell Activation via an Interleukin-1β Pathway in Systemic Lupus Erythematosus. PMID:28153882
Tdp-43 cryptic exons are highly variable between cell types. PMID:28153034
Genes2GO: A web application for querying gene sets for specific GO terms. PMID:28149059
Blockade to pathological remodeling of infarcted heart tissue using a porcupine antagonist. PMID:28143939
Impact of Neutron Exposure on Global Gene Expression in a Human Peripheral Blood Model. PMID:28140791
Therapeutic properties of Scutellaria baicalensis in db/db mice evaluated using Connectivity Map and network pharmacology. PMID:28139721
Identification of Entry Factors Involved in Hepatitis C Virus Infection Based on Host-Mimicking Short Linear Motifs. PMID:28129350
Identification of the molecular mechanisms underlying dilated cardiomyopathy via bioinformatic analysis of gene expression profiles. PMID:28123501
Identification of potential therapeutic targets for colorectal cancer by bioinformatics analysis. PMID:28105216
Functional analysis of keratinocyte and fibroblast gene expression in skin and keloid scar tissue based on deviation analysis of dynamic capabilities. PMID:28101157
Identification of biomarkers of intrahepatic cholangiocarcinoma via integrated analysis of mRNA and miRNA microarray data. PMID:28098904
Systematic analysis of microarray datasets to identify Parkinson's disease‑associated pathways and genes. PMID:28098893
TORC1-dependent sumoylation of Rpc82 promotes RNA polymerase III assembly and activity. PMID:28096404
Drosophila Genotype Influences Commensal Bacterial Levels. PMID:28095502
Expression profiling elucidates a molecular gene signature for pulmonary hypertension in sarcoidosis. PMID:28090288
Cecal MicroRNAome response to Salmonella enterica serovar Enteritidis infection in White Leghorn Layer. PMID:28086873
RNAi reveals proteins for metabolism and protein processing associated with Langat virus infection in Ixodes scapularis (black-legged tick) ISE6 cells. PMID:28086865
Identification of Key Transcription Factors Associated with Lung Squamous Cell Carcinoma. PMID:28081052
Systemically identifying and prioritizing risk lncRNAs through integration of pan-cancer phenotype associations. PMID:28076842
Construction of an miRNA-regulated drug-pathway network reveals drug repurposing candidates for myasthenia gravis. PMID:28075449
Novel blood-based microRNA biomarker panel for early diagnosis of chronic pancreatitis. PMID:28074846
Drug Response Prediction as a Link Prediction Problem. PMID:28067293
Positioning of Tacrolimus for the Treatment of Diabetic Nephropathy Based on Computational Network Analysis. PMID:28060893
Genome-Wide DNA Methylation Patterns Analysis of Noncoding RNAs in Temporal Lobe Epilepsy Patients. PMID:28058582
Network pharmacology-based identification of key pharmacological pathways of Yin-Huang-Qing-Fei capsule acting on chronic bronchitis. PMID:28053519
Myoblast replication is reduced in the IUGR fetus despite maintained proliferative capacity in vitro. PMID:28053000
Tocotrienols induce endoplasmic reticulum stress and apoptosis in cervical cancer cells. PMID:28031751
Single-Cell-Based Analysis Highlights a Surge in Cell-to-Cell Molecular Variability Preceding Irreversible Commitment in a Differentiation Process. PMID:28027290
Prediction of key genes and miRNAs responsible for loss of muscle force in patients during an acute exacerbation of chronic obstructive pulmonary disease. PMID:28025995
Conditionally reprogrammed normal and primary tumor prostate epithelial cells: a novel patient-derived cell model for studies of human prostate cancer. PMID:28009986
Gene expression differences in Longissimus muscle of Nelore steers genetically divergent for residual feed intake. PMID:28004777
Detecting Positive Selection of Korean Native Goat Populations Using Next-Generation Sequencing. PMID:27989103
Co-expression analysis and identification of fecundity-related long non-coding RNAs in sheep ovaries. PMID:27982099
Interactomic analysis of REST/NRSF and implications of its functional links with the transcription suppressor TRIM28 during neuronal differentiation. PMID:27976729
Comparative analysis of hepatocellular carcinoma and cirrhosis gene expression profiles. PMID:27959423
Gene markers of fracture healing in early stage and the regulatory mechanism during the process using microarray analysis. PMID:27956081
Network analysis of human post-mortem microarrays reveals novel genes, microRNAs, and mechanistic scenarios of potential importance in fighting huntington's disease. PMID:27924190
Comparative Transcriptomic and Epigenomic Analyses Reveal New Regulators of Murine Brown Adipogenesis. PMID:27923061
Age-related changes in the gene expression profile of antigen-specific mouse CD8+ T cells can be partially reversed by blockade of the BTLA/CD160 pathways during vaccination. PMID:27922818
Theobromine Upregulates Osteogenesis by Human Mesenchymal Stem Cells In Vitro and Accelerates Bone Development in Rats. PMID:27913821
Comparative analysis of TCDD-induced AhR-mediated gene expression in human, mouse and rat primary B cells. PMID:27913140
Immunoglobulin superfamily genes are novel prognostic biomarkers for breast cancer. PMID:27911271
A PAM50-Based Chemoendocrine Score for Hormone Receptor-Positive Breast Cancer with an Intermediate Risk of Relapse. PMID:27903675
A SILAC-Based Method for Quantitative Proteomic Analysis of Intestinal Organoids. PMID:27901089
Microarray analysis of differentially-expressed genes and linker genes associated with the molecular mechanism of colorectal cancer. PMID:27899990
Analysis of the molecular mechanism of osteosarcoma using a bioinformatics approach. PMID:27899966
Transcriptome sequencing of the choroid plexus in schizophrenia. PMID:27898074
Diet-Microbiota Interactions Mediate Global Epigenetic Programming in Multiple Host Tissues. PMID:27889451
Insights into the human mesenchymal stromal/stem cell identity through integrative transcriptomic profiling. PMID:27871224
Most of the tight positional conservation of transcription factor binding sites near the transcription start site reflects their co-localization within regulatory modules. PMID:27871221
Pericyte MyD88 and IRAK4 control inflammatory and fibrotic responses to tissue injury. PMID:27869651
Carcinogenic effects of oil dispersants: A KEGG pathway-based RNA-seq study of human airway epithelial cells. PMID:27866042
The molecular basis of breast cancer pathological phenotypes. PMID:27861902
A Cell Type-Specific Expression Signature Predicts Haploinsufficient Autism-Susceptibility Genes. PMID:27860035
Immunosenescence-Related Transcriptomic and Immunologic Changes in Older Individuals Following Influenza Vaccination. PMID:27853459
Differential expression of TGF-β superfamily members and role of Smad1/5/9-signalling in chondral versus endochondral chondrocyte differentiation. PMID:27848974
Macrophage Ontogeny Underlies Differences in Tumor-Specific Education in Brain Malignancies. PMID:27840052
Systematic Analysis of Protein Interaction Network Associated with Azoospermia. PMID:27834916
Systemic inoculation of Escherichia coli causes emergency myelopoiesis in zebrafish larval caudal hematopoietic tissue. PMID:27833150
The bronchial epithelial cell bacterial microbiome and host response in patients infected with human immunodeficiency virus. PMID:27829448
Potential molecular characteristics in situ in response to repetitive UVB irradiation. PMID:27829444
Genome-Wide Detection of Selective Signatures in Chicken through High Density SNPs. PMID:27820849
Low expression levels of putative HPV encoded microRNAs in cervical samples. PMID:27818894
Injury-induced ctgfa directs glial bridging and spinal cord regeneration in zebrafish. PMID:27811277
Genetic and hormonal control of hepatic steatosis in female and male mice. PMID:27811231
Liver p53 is stabilized upon starvation and required for amino acid catabolism and gluconeogenesis. PMID:27811061
A YY1-dependent increase in aerobic metabolism is indispensable for intestinal organogenesis. PMID:27802136
Correlation of B7-H3 with androgen receptor, immune pathways and poor outcome in prostate cancer: an expression-based analysis. PMID:27801901
Expression of myogenes in longissimus dorsi muscle during prenatal development in commercial and local Piau pigs. PMID:27801482
Telomere shortening and metabolic compromise underlie dystrophic cardiomyopathy. PMID:27799523
Network-based expression analysis reveals key genes related to glucocorticoid resistance in infant acute lymphoblastic leukemia. PMID:27798768
Identification and Expression Profiling of miRNAome in Goat longissimus dorsi Muscle from Prenatal Stages to a Neonatal Stage. PMID:27798673
Cell Cycle M-Phase Genes Are Highly Upregulated in Anaplastic Thyroid Carcinoma. PMID:27796151
Maternal Chromium Restriction Leads to Glucose Metabolism Imbalance in Mice Offspring through Insulin Signaling and Wnt Signaling Pathways. PMID:27782077
A Transcriptomic Signature of Mouse Liver Progenitor Cells. PMID:27777588
Prenatal hyperbaric normoxia treatment improves healthspan and regulates chitin metabolic genes in Drosophila melanogaster. PMID:27777382
Quantitative extracellular matrix proteomics to study mammary and liver tissue microenvironments. PMID:27771439
Behavioral and molecular studies of quantitative differences in hygienic behavior in honeybees. PMID:27769283
Differentially expressed circulating LncRNAs and mRNA identified by microarray analysis in obese patients. PMID:27767123
IGSA: Individual Gene Sets Analysis, including Enrichment and Clustering. PMID:27764138
SYVN1, NEDD8, and FBXO2 Proteins Regulate ΔF508 Cystic Fibrosis Transmembrane Conductance Regulator (CFTR) Ubiquitin-mediated Proteasomal Degradation. PMID:27756846
Integrating network, sequence and functional features using machine learning approaches towards identification of novel Alzheimer genes. PMID:27756223
Epigenetics in Schizophrenia: A Pilot Study of Global DNA Methylation in Different Brain Regions Associated with Higher Cognitive Functions. PMID:27746755
Proteomic analysis of mucopolysaccharidosis I mouse brain with two-dimensional polyacrylamide gel electrophoresis. PMID:27742266
Rare deleterious mutations are associated with disease in bipolar disorder families. PMID:27725659
CCAR2 Is Required for Proliferation and Tumor Maintenance in Human Squamous Cell Carcinoma. PMID:27725203
Patient survival and tumor characteristics associated with CHEK2:p.I157T - findings from the Breast Cancer Association Consortium. PMID:27716369
Improved pose and affinity predictions using different protocols tailored on the basis of data availability. PMID:27714493
Feature Subset Selection for Cancer Classification Using Weight Local Modularity. PMID:27703256
Mechanistic evaluation and transcriptional signature of a glutathione S-transferase omega 1 inhibitor. PMID:27703239
Identification of genes involved in Epstein-Barr virus-associated nasopharyngeal carcinoma. PMID:27698802
Chromosomal rearrangements and protein globularity changes in Mycobacterium tuberculosis isolates from cerebrospinal fluid. PMID:27688977
Genome-wide association studies of immune, disease and production traits in indigenous chicken ecotypes. PMID:27687164
Decreased TRPM7 inhibits activities and induces apoptosis of bladder cancer cells via ERK1/2 pathway. PMID:27662662
Blood RNA expression profiles undergo major changes during the seventh decade. PMID:27655681
Combined Analysis of ChIP Sequencing and Gene Expression Dataset in Breast Cancer. PMID:27654269
A mouse model of alcoholic liver fibrosis-associated acute kidney injury identifies key molecular pathways. PMID:27641628
Comprehensive genomic characterization of five canine lymphoid tumor cell lines. PMID:27639374
v-Src Oncogene Induces Trop2 Proteolytic Activation via Cyclin D1. PMID:27634768
Lrrc75b is a novel negative regulator of C2C12 myogenic differentiation. PMID:27633041
FOXO/DAF-16 Activation Slows Down Turnover of the Majority of Proteins in C. elegans. PMID:27626670
LINC00520 is induced by Src, STAT3, and PI3K and plays a functional role in breast cancer. PMID:27626181
Evaluation of Different Normalization and Analysis Procedures for Illumina Gene Expression Microarray Data Involving Small Changes. PMID:27605185
MuSK is a BMP co-receptor that shapes BMP responses and calcium signaling in muscle cells. PMID:27601729
Transcriptome Analysis of Porphyrin-Accumulated and X-Ray-Irradiated Cell Cultures under Limited Proliferation and Non-Lethal Conditions. PMID:27600211
Small-Molecule Inhibition of Rho/MKL/SRF Transcription in Prostate Cancer Cells: Modulation of Cell Cycle, ER Stress, and Metastasis Gene Networks. PMID:27600078
Co-expression network analysis of Down's syndrome based on microarray data. PMID:27588071
Mammalian Brain Development is Accompanied by a Dramatic Increase in Bipolar DNA Methylation. PMID:27585862
Identification of key pathways and genes in colorectal cancer using bioinformatics analysis. PMID:27581154
Integrin-α10 Dependency Identifies RAC and RICTOR as Therapeutic Targets in High-Grade Myxofibrosarcoma. PMID:27577794
Identification of hub genes and regulatory factors of glioblastoma multiforme subgroups by RNA-seq data analysis. PMID:27572852
Long noncoding RNA linc00598 regulates CCND2 transcription and modulates the G1 checkpoint. PMID:27572135
Whole blood transcriptional profiling comparison between different milk yield of Chinese Holstein cows using RNA-seq data. PMID:27557137
Coordinated regulation of hepatic and adipose tissue transcriptomes by the oral administration of an amino acid mixture simulating the larval saliva of Vespa species. PMID:27551322
Foxn1 regulates key target genes essential for T cell development in postnatal thymic epithelial cells. PMID:27548434
Aging Shapes the Population-Mean and -Dispersion of Gene Expression in Human Brains. PMID:27536236
Niclosamide As a Potential Nonsteroidal Therapy for Endometriosis That Preserves Reproductive Function in an Experimental Mouse Model. PMID:27535961
Systematic analysis of the regulatory functions of microRNAs in chicken hepatic lipid metabolism. PMID:27535581
Integrated analysis of omics data using microRNA-target mRNA network and PPI network reveals regulation of Gnai1 function in the spinal cord of Ews/Ewsr1 KO mice. PMID:27534535
Carbonic anhydrase enzymes regulate mast cell-mediated inflammation. PMID:27526715
Vascular smooth muscle cell contractile protein expression is increased through protein kinase G-dependent and -independent pathways by glucose-6-phosphate dehydrogenase inhibition and deficiency. PMID:27521420
Effects of Maternal Chromium Restriction on the Long-Term Programming in MAPK Signaling Pathway of Lipid Metabolism in Mice. PMID:27517955
Circadian Oscillation of the Lettuce Transcriptome under Constant Light and Light-Dark Conditions. PMID:27512400
Transcriptional Profiling of Cultured, Embryonic Epicardial Cells Identifies Novel Genes and Signaling Pathways Regulated by TGFβR3 In Vitro. PMID:27505173
The Value of a Novel Panel of Cervical Cancer Biomarkers for Triage of HPV Positive Patients and for Detecting Disease Progression. PMID:27497597
The genome-wide role of HSF-1 in the regulation of gene expression in Caenorhabditis elegans. PMID:27496166
Prediction of scaffold proteins based on protein interaction and domain architectures. PMID:27490120
A small molecule inhibitor of mutant IDH2 rescues cardiomyopathy in a D-2-hydroxyglutaric aciduria type II mouse model. PMID:27469509
Identification of aldolase A as a potential diagnostic biomarker for colorectal cancer based on proteomic analysis using formalin-fixed paraffin-embedded tissue. PMID:27468721
Genome-Wide Prediction and Analysis of 3D-Domain Swapped Proteins in the Human Genome from Sequence Information. PMID:27467780
Context Specific and Differential Gene Co-expression Networks via Bayesian Biclustering. PMID:27467526
Endothelial-Specific EphA4 Negatively Regulates Native Pial Collateral Formation and Re-Perfusion following Hindlimb Ischemia. PMID:27467069
Aliskiren Administration during Early Postnatal Life Sex-Specifically Alleviates Hypertension Programmed by Maternal High Fructose Consumption. PMID:27462279
Genome-wide genetic variation discovery in Chinese Taihu pig breeds using next generation sequencing. PMID:27461929
Transcriptome analysis of paired primary colorectal carcinoma and liver metastases reveals fusion transcripts and similar gene expression profiles in primary carcinoma and liver metastases. PMID:27461012
Genome-wide analysis of DNA methylation in hepatoblastoma tissues. PMID:27446465
Microdialysis Sampling from Wound Fluids Enables Quantitative Assessment of Cytokines, Proteins, and Metabolites Reveals Bone Defect-Specific Molecular Profiles. PMID:27441377
Differential effect of mild and severe pulmonary embolism on the rat lung transcriptome. PMID:27435598
Application of network construction to estimate functional changes to insulin receptor substrates 1 and 2 in Huh7 cells following infection with the hepatitis C virus. PMID:27432476
Chromatin remodeling inactivates activity genes and regulates neural coding. PMID:27418512
Vectors as Epidemiological Sentinels: Patterns of Within-Tick Borrelia burgdorferi Diversity. PMID:27414806
The differential expression of alternatively polyadenylated transcripts is a common stress-induced response mechanism that modulates mammalian mRNA expression in a quantitative and qualitative fashion. PMID:27407180
Genetic and epigenetic methylation defects and implication of the ERMN gene in autism spectrum disorders. PMID:27404287
Epigenetic Plasticity Drives Adipogenic and Osteogenic Differentiation of Marrow-derived Mesenchymal Stem Cells. PMID:27402842
The Pleiotropic Antibacterial Mechanisms of Ursolic Acid against Methicillin-Resistant Staphylococcus aureus (MRSA). PMID:27399657
Ancestral vinclozolin exposure alters the epigenetic transgenerational inheritance of sperm small noncoding RNAs. PMID:27390623
Transcriptome Analysis on Monocytes from Patients with Neovascular Age-Related Macular Degeneration. PMID:27374485
Nucleolin interacts with influenza A nucleoprotein and contributes to viral ribonucleoprotein complexes nuclear trafficking and efficient influenza viral replication. PMID:27373907
Evolutionary and Topological Properties of Genes and Community Structures in Human Gene Regulatory Networks. PMID:27359334
A new strategy for exploring the hierarchical structure of cancers by adaptively partitioning functional modules from gene expression network. PMID:27349736
5-azacytidine induces transcriptome changes in Escherichia coli via DNA methylation-dependent and DNA methylation-independent mechanisms. PMID:27349222
Investigation of potential molecular biomarkers and small molecule drugs for hepatocellular carcinoma transformed from cirrhosis. PMID:27347171
Identification of genes associated with renal cell carcinoma using gene expression profiling analysis. PMID:27347102
Network motif-based method for identifying coronary artery disease. PMID:27347046
Acute cellular rejection elicits distinct microRNA signatures in airway epithelium of lung transplant patients. PMID:27340694
Gene Expression Differences in Peripheral Blood of Parkinson's Disease Patients with Distinct Progression Profiles. PMID:27322389
Functional Genomic Analyses Identify Pathways Dysregulated in Animal Model of Autism. PMID:27321591
Identification of CD20, ECM, and ITGA as Biomarkers for Osteosarcoma by Integrating Transcriptome Analysis. PMID:27314445
Identification of key genes in glioblastoma-associated stromal cells using bioinformatics analysis. PMID:27313730
The landscape of accessible chromatin in mammalian preimplantation embryos. PMID:27309802
Calcineurin complex isolated from T-cell acute lymphoblastic leukemia (T-ALL) cells identifies new signaling pathways including mTOR/AKT/S6K whose inhibition synergize with calcineurin inhibition to promote T-ALL cell death. PMID:27304189
Functional genomics analyses of RNA-binding proteins reveal the splicing regulator SNRPB as an oncogenic candidate in glioblastoma. PMID:27287018
Differential co-expression analysis of venous thromboembolism based on gene expression profile data. PMID:27284300
A restricted period for formation of outer subventricular zone defined by Cdh1 and Trnp1 levels. PMID:27264089
Common integration sites of published datasets identified using a graph-based framework. PMID:27257471
Identification of Changes in Gene expression of rats after Sensory and Motor Nerves Injury. PMID:27253193
Reactive oxygen species-associated molecular signature predicts survival in patients with sepsis. PMID:27252846
Key genes and pathways predicted in papillary thyroid carcinoma based on bioinformatics analysis. PMID:27250077
WDR76 Co-Localizes with Heterochromatin Related Proteins and Rapidly Responds to DNA Damage. PMID:27248496
Hypothalamic Proteomic Analysis Reveals Dysregulation of Glutamate Balance and Energy Metabolism in a Mouse Model of Chronic Mild Stress-Induced Depression. PMID:27230881
Microarray data on altered transcriptional program of Phgdh-deficient mouse embryonic fibroblasts caused by ʟ-serine depletion. PMID:27222860
Design of pathway preferential estrogens that provide beneficial metabolic and vascular effects without stimulating reproductive tissues. PMID:27221711
Genomic Landscape of Colorectal Mucosa and Adenomas. PMID:27221540
Screening of biomarkers for prediction of response to and prognosis after chemotherapy for breast cancers. PMID:27217777
Altered gene expression in the lower respiratory tract of Car6 (-/-) mice. PMID:27209317
Leveraging Comparative Genomics to Identify and Functionally Characterize Genes Associated with Sperm Phenotypes in Python bivittatus (Burmese Python). PMID:27200191
The tumor microenvironment underlies acquired resistance to CSF-1R inhibition in gliomas. PMID:27199435
Evolution of a transcriptional regulator from a transmembrane nucleoporin. PMID:27198230
Immunogenic Subtypes of Breast Cancer Delineated by Gene Classifiers of Immune Responsiveness. PMID:27197066
SPATIAL: A System-level PAThway Impact AnaLysis approach. PMID:27193997
Practical aspects of NGS-based pathways analysis for personalized cancer science and medicine. PMID:27191992
Integrated and Functional Genomics Analysis Validates the Relevance of the Nuclear Variant ErbB380kDa in Prostate Cancer Progression. PMID:27191720
microRNAs in the Same Clusters Evolve to Coordinately Regulate Functionally Related Genes. PMID:27189568
SOX7 co-regulates Wnt/β-catenin signaling with Axin-2: both expressed at low levels in breast cancer. PMID:27188720
Gene expression during the first 28 days of axolotl limb regeneration I: Experimental design and global analysis of gene expression. PMID:27168937
Calcineurin Orchestrates Lateral Transfer of Aspergillus fumigatus during Macrophage Cell Death. PMID:27163634
DNA Microarray Analysis in Screening Features of Genes Involved in Spinal Cord Injury. PMID:27160807
Functional significance of the discordance between transcriptional profile and left ventricular structure/function during reverse remodeling. PMID:27158672
Oncomirs miRNA-221/222 and Tumor Suppressors miRNA-199a/195 Are Crucial miRNAs in Liver Cancer: A Systematic Analysis. PMID:27156077
Large-scale rewiring of innate immunity circuitry and microRNA regulation during initial rice blast infection. PMID:27150822
KeyPathwayMinerWeb: online multi-omics network enrichment. PMID:27150809
Cross-tissue Analysis of Gene and Protein Expression in Normal and Cancer Tissues. PMID:27142790
Enrichr: a comprehensive gene set enrichment analysis web server 2016 update. PMID:27141961
Associations between joint effusion in the knee and gene expression levels in the circulation: a meta-analysis. PMID:27134727
Efficient Record Linkage Algorithms Using Complete Linkage Clustering. PMID:27124604
Construction and analysis of protein-protein interaction networks based on proteomics data of prostate cancer. PMID:27121963
An examination of the regulatory mechanism of Pxdn mutation-induced eye disorders using microarray analysis. PMID:27121343
MiR-210 promotes sensory hair cell formation in the organ of corti. PMID:27121005
ISL1 and JMJD3 synergistically control cardiac differentiation of embryonic stem cells. PMID:27105846
PCBP1/HNRNP E1 Protects Chromosomal Integrity by Translational Regulation of CDC27. PMID:27102006
Candidate genes and pathogenesis investigation for sepsis-related acute respiratory distress syndrome based on gene expression profile. PMID:27090785
Isoform switching and exon skipping induced by the DNA methylation inhibitor 5-Aza-2'-deoxycytidine. PMID:27090213
Human Epithelial Cells Discriminate between Commensal and Pathogenic Interactions with Candida albicans. PMID:27088599
Epigenetic Profiling of H3K4Me3 Reveals Herbal Medicine Jinfukang-Induced Epigenetic Alteration Is Involved in Anti-Lung Cancer Activity. PMID:27087825
Induction of Macrophage Function in Human THP-1 Cells Is Associated with Rewiring of MAPK Signaling and Activation of MAP3K7 (TAK1) Protein Kinase. PMID:27066479
Bioinformatics analysis of differentially expressed proteins in prostate cancer based on proteomics data. PMID:27051295
Molecular crosstalk between tumour and brain parenchyma instructs histopathological features in glioblastoma. PMID:27049916
Evidence for embryonic stem-like signature and epithelial-mesenchymal transition features in the spheroid cells derived from lung adenocarcinoma. PMID:27048287
Association of MicroRNA-196a2 Variant with Response to Short-Acting β2-Agonist in COPD: An Egyptian Pilot Study. PMID:27043015
A chromatin modifier integrates insulin/IGF-1 signalling and dietary restriction to regulate longevity. PMID:27039057
Using biological networks to integrate, visualize and analyze genomics data. PMID:27036106
A Thermodynamic-Based Interpretation of Protein Expression Heterogeneity in Different Glioblastoma Multiforme Tumors Identifies Tumor-Specific Unbalanced Processes. PMID:27035264
Mutations in SMG9, Encoding an Essential Component of Nonsense-Mediated Decay Machinery, Cause a Multiple Congenital Anomaly Syndrome in Humans and Mice. PMID:27018474
Mycobacterium bovis BCG Interferes with miR-3619-5p Control of Cathepsin S in the Process of Autophagy. PMID:27014637
DNA Damage Response Is Involved in the Developmental Toxicity of Mebendazole in Zebrafish Retina. PMID:27014071
Adipose tissue RNASeq reveals novel gene-nutrient interactions following n-3 PUFA supplementation and evoked inflammation in humans. PMID:27012629
Using PSEA-Quant for Protein Set Enrichment Analysis of Quantitative Mass Spectrometry-Based Proteomics. PMID:27010334
Experimental Neuromyelitis Optica Induces a Type I Interferon Signature in the Spinal Cord. PMID:26990978
Genome-wide Long Non-coding RNA Analysis Identified Circulating LncRNAs as Novel Non-invasive Diagnostic Biomarkers for Gynecological Disease. PMID:26987697
GeneAnalytics: An Integrative Gene Set Analysis Tool for Next Generation Sequencing, RNAseq and Microarray Data. PMID:26983021
Endometrial transcriptional profiling of a bovine fertility model by Next-Generation Sequencing. PMID:26981354
Pancreatic cancer cell-derived IGFBP-3 contributes to muscle wasting. PMID:26975989
Long Non-coding RNA in Neurons: New Players in Early Response to BDNF Stimulation. PMID:26973456
hTERT promotes cell adhesion and migration independent of telomerase activity. PMID:26971878
Age-related changes in the transcriptome of antibody-secreting cells. PMID:26967249
Gene expression variability in mammalian embryonic stem cells using single cell RNA-seq data. PMID:26951854
Spermatogenesis Drives Rapid Gene Creation and Masculinization of the X Chromosome in Stalk-Eyed Flies (Diopsidae). PMID:26951781
Identification of biological targets of therapeutic intervention for clear cell renal cell carcinoma based on bioinformatics approach. PMID:26941587
Proteomics of Urinary Vesicles Links Plakins and Complement to Polycystic Kidney Disease. PMID:26940098
Integrated microRNA‑gene analysis of coronary artery disease based on miRNA and gene expression profiles. PMID:26936111
Meta-Analysis of Transcriptional Responses to Mastitis-Causing Escherichia coli. PMID:26933871
Generation and characterization of rat liver stem cell lines and their engraftment in a rat model of liver failure. PMID:26915950
GOsummaries: an R Package for Visual Functional Annotation of Experimental Data. PMID:26913188
IκBα mediates prostate cancer cell death induced by combinatorial targeting of the androgen receptor. PMID:26907477
Skeletal muscle transcriptional profiles in two Italian beef breeds, Chianina and Maremmana, reveal breed specific variation. PMID:26896938
Pathway of PPAR-gamma coactivators in thermogenesis: a pivotal traditional Chinese medicine-associated target for individualized treatment of rheumatoid arthritis. PMID:26895106
Sevoflurane exerts a more marked influence compared with propofol on gene expression in patients undergoing coronary artery bypass graft surgery. PMID:26893629
Cinacalcet inhibits neuroblastoma tumor growth and upregulates cancer-testis antigens. PMID:26893368
Transcriptomic Profiling of Extracellular RNAs Present in Cerebrospinal Fluid Identifies Differentially Expressed Transcripts in Parkinson's Disease. PMID:26889637
Serum microRNA microarray analysis identifies miR-4429 and miR-4689 are potential diagnostic biomarkers for biliary atresia. PMID:26879603
Transcriptional profiling of cortical versus cancellous bone from mechanically-loaded murine tibiae reveals differential gene expression. PMID:26876048
Meta-Analysis of Tumor Stem-Like Breast Cancer Cells Using Gene Set and Network Analysis. PMID:26870956
Identification of potential therapeutic targets for papillary thyroid carcinoma by bioinformatics analysis. PMID:26870166
Identification of Molecular Targets for Predicting Colon Adenocarcinoma. PMID:26868022
Low Dose Iron Treatments Induce a DNA Damage Response in Human Endothelial Cells within Minutes. PMID:26866805
Prediction of Genes Related to Positive Selection Using Whole-Genome Resequencing in Three Commercial Pig Breeds. PMID:26865845
Transcriptional response of porcine skeletal muscle to feeding a linseed-enriched diet to growing pigs. PMID:26862397
Endogenous dendritic cells from the tumor microenvironment support T-ALL growth via IGF1R activation. PMID:26862168
Dynamic changes in the gene expression profile during rat oral carcinogenesis induced by 4-nitroquinoline 1-oxide. PMID:26860129
Analysis of differentially expressed proteins in Yersinia enterocolitica-infected HeLa cells. PMID:26854600
Mood stabilizing drugs regulate transcription of immune, neuronal and metabolic pathway genes in Drosophila. PMID:26852229
MicroRNAs as early toxicity signatures of doxorubicin in human-induced pluripotent stem cell-derived cardiomyocytes. PMID:26842497
Discovering All Transcriptome Single-Nucleotide Polymorphisms and Scanning for Selection Signatures in Ducks (Anas platyrhynchos). PMID:26819540
SOHSite: incorporating evolutionary information and physicochemical properties to identify protein S-sulfenylation sites. PMID:26819243
A Bayesian approach for estimating allele-specific expression from RNA-Seq data with diploid genomes. PMID:26818838
Focal exposure of limited lung volumes to high-dose irradiation down-regulated organ development-related functions and up-regulated the immune response in mouse pulmonary tissues. PMID:26818610
Medoidshift clustering applied to genomic bulk tumor data. PMID:26817708
Megakaryocytic Maturation in Response to Shear Flow Is Mediated by the Activator Protein 1 (AP-1) Transcription Factor via Mitogen-activated Protein Kinase (MAPK) Mechanotransduction. PMID:26814129
Generation of 2,000 breast cancer metabolic landscapes reveals a poor prognosis group with active serotonin production. PMID:26813959
Systems-Pharmacology Dissection of Traditional Chinese Medicine Compound Saffron Formula Reveals Multi-scale Treatment Strategy for Cardiovascular Diseases. PMID:26813334
Dysregulated expression of microRNAs and mRNAs in myocardial infarction. PMID:26807177
Targeting Mitogen-Activated Protein Kinase Signaling in Mouse Models of Cardiomyopathy Caused by Lamin A/C Gene Mutations. PMID:26795484
High risk of development of renal cell tumor in end-stage kidney disease: the role of microenvironment. PMID:26790439
Genome-wide methylation profiling identifies novel methylated genes in neuroblastoma tumors. PMID:26786290
Identification of novel noncoding transcripts in telomerase-negative yeast using RNA-seq. PMID:26786024
Network Topology Analysis of Post-Mortem Brain Microarrays Identifies More Alzheimer's Related Genes and MicroRNAs and Points to Novel Routes for Fighting with the Disease. PMID:26784894
Analysis of differentially expressed genes based on microarray data of glioma. PMID:26770324
A six-microRNA set as prognostic indicators for bile duct cancer. PMID:26770318
Mapping the O-Mannose Glycoproteome in Saccharomyces cerevisiae. PMID:26764011
Reconstruction of temporal activity of microRNAs from gene expression data in breast cancer cell line. PMID:26763900
An essential role for UTX in resolution and activation of bivalent promoters. PMID:26762983
Mitochondrial iron chelation ameliorates cigarette smoke-induced bronchitis and emphysema in mice. PMID:26752519
Transcriptome Analysis of Honeybee (Apis Mellifera) Haploid and Diploid Embryos Reveals Early Zygotic Transcription during Cleavage. PMID:26751956
Identification of novel gene and pathway targets for human epilepsy treatment. PMID:26742644
RYR2, PTDSS1 and AREG genes are implicated in a Lebanese population-based study of copy number variation in autism. PMID:26742492
A patient with a novel homozygous missense mutation in FTO and concomitant nonsense mutation in CETP. PMID:26740239
Identification of potential therapeutic targets for lung cancer by bioinformatics analysis. PMID:26739332
Differential Occurrence of Interactions and Interaction Domains in Proteins Containing Homopolymeric Amino Acid Repeats. PMID:26734058
Transcriptome Analysis of Pig In Vivo, In Vitro-Fertilized, and Nuclear Transfer Blastocyst-Stage Embryos Treated with Histone Deacetylase Inhibitors Postfusion and Activation Reveals Changes in the Lysosomal Pathway. PMID:26731590
miRNA signature identification of retinoblastoma and the correlations between differentially expressed miRNAs during retinoblastoma progression. PMID:26730174
Transfection of Sertoli cells with androgen receptor alters gene expression without androgen stimulation. PMID:26715186
LYN, a Key Gene From Bioinformatics Analysis, Contributes to Development and Progression of Esophageal Adenocarcinoma. PMID:26708841
Chronic binge alcohol administration dysregulates global regulatory gene networks associated with skeletal muscle wasting in simian immunodeficiency virus-infected macaques. PMID:26699868
Size of the Ovulatory Follicle Dictates Spatial Differences in the Oviductal Transcriptome in Cattle. PMID:26699362
Maternal Melatonin Therapy Rescues Prenatal Dexamethasone and Postnatal High-Fat Diet Induced Programmed Hypertension in Male Rat Offspring. PMID:26696906
Bioinformatics identification of potentially involved microRNAs in Tibetan with gastric cancer based on microRNA profiling. PMID:26692821
The impact of oil spill to lung health--Insights from an RNA-seq study of human airway epithelial cells. PMID:26692141
Network-assisted analysis of primary Sjögren's syndrome GWAS data in Han Chinese. PMID:26686423
Response and survival of breast cancer intrinsic subtypes following multi-agent neoadjuvant chemotherapy. PMID:26684470
Expression Profiling after Prolonged Experimental Febrile Seizures in Mice Suggests Structural Remodeling in the Hippocampus. PMID:26684451
MicroRNA-708-5p acts as a therapeutic agent against metastatic lung cancer. PMID:26678031
Autophagic degradation of aquaporin-2 is an early event in hypokalemia-induced nephrogenic diabetes insipidus. PMID:26674602
Inferring the progression of multifocal liver cancer from spatial and temporal genomic heterogeneity. PMID:26672766
Chronic acidosis in the tumour microenvironment selects for overexpression of LAMP2 in the plasma membrane. PMID:26658462
Embryonic attenuated Wnt/β-catenin signaling defines niche location and long-term stem cell fate in hair follicle. PMID:26653852
Identification of Genes Associated with Smad3-dependent Renal Injury by RNA-seq-based Transcriptome Analysis. PMID:26648110
Identifying molecular subtypes in human colon cancer using gene expression and DNA methylation microarray data. PMID:26647925
The impact of genetic variation and cigarette smoke on DNA methylation in current and former smokers from the COPDGene study. PMID:26646902
Integration Analysis of Three Omics Data Using Penalized Regression Methods: An Application to Bladder Cancer. PMID:26646822
Genetic architecture of early pre-inflammatory stage transcription signatures of autoimmune diabetes in the pancreatic lymph nodes of the NOD mouse reveals significant gene enrichment on chromosomes 6 and 7. PMID:26629415
Screening of Target Genes and Regulatory Function of miRNAs as Prognostic Indicators for Prostate Cancer. PMID:26628405
CardioGenBase: A Literature Based Multi-Omics Database for Major Cardiovascular Diseases. PMID:26624015
Quantitative phosphoproteomic analysis of early seed development in rice (Oryza sativa L.). PMID:26613898
Differential network analysis reveals dysfunctional regulatory networks in gastric carcinogenesis. PMID:26609471
Advanced Applications of RNA Sequencing and Challenges. PMID:26609224
Molecular diagnosis: Implications for ophthalmology. PMID:26608807
Functional Cross-Talking between Differentially Expressed and Alternatively Spliced Genes in Human Liver Cancer Cells Treated with Berberine. PMID:26606055
Endochondral Growth Defect and Deployment of Transient Chondrocyte Behaviors Underlie Osteoarthritis Onset in a Natural Murine Model. PMID:26605758
Gene expression profiles and protein-protein interaction network analysis in AIDS patients with HIV-associated encephalitis and dementia. PMID:26604827
Novel prognostic genes of diffuse large B-cell lymphoma revealed by survival analysis of gene expression data. PMID:26604798
Constellation Map: Downstream visualization and interpretation of gene set enrichment results. PMID:26594333
A comparison of human and mouse gene co-expression networks reveals conservation and divergence at the tissue, pathway and disease levels. PMID:26589719
CpG island erosion, polycomb occupancy and sequence motif enrichment at bivalent promoters in mammalian embryonic stem cells. PMID:26582124
Analysis of Stage-Specific Gene Expression Profiles in the Uterine Endometrium during Pregnancy in Pigs. PMID:26580069
Recurrent internal tandem duplications of BCOR in clear cell sarcoma of the kidney. PMID:26573325
miR-34a screened by miRNA profiling negatively regulates Wnt/β-catenin signaling pathway in Aflatoxin B1 induced hepatotoxicity. PMID:26567713
Diet and endocrine effects on behavioral maturation-related gene expression in the pars intercerebralis of the honey bee brain. PMID:26567353
Graph-based unsupervised feature selection and multiview clustering for microarray data. PMID:26564977
Comprehensive Transcriptome Analysis of Six Catfish Species from an Altitude Gradient Reveals Adaptive Evolution in Tibetan Fishes. PMID:26564948
From System-Wide Differential Gene Expression to Perturbed Regulatory Factors: A Combinatorial Approach. PMID:26562430
Noncoding RNA in the transcriptional landscape of human neural progenitor cell differentiation. PMID:26557050
Screening feature genes of lung carcinoma with DNA microarray analysis. PMID:26550126
Comprehensive Screening of Gene Function and Networks by DNA Microarray Analysis in Japanese Patients with Idiopathic Portal Hypertension. PMID:26549939
Transdifferentiation of periodontal ligament-derived stem cells into retinal ganglion-like cells and its microRNA signature. PMID:26549845
Genome-wide endogenous DAF-16/FOXO recruitment dynamics during lowered insulin signalling in C. elegans. PMID:26539642
Identification of genomic biomarkers for anthracycline-induced cardiotoxicity in human iPSC-derived cardiomyocytes: an in vitro repeated exposure toxicity approach for safety assessment. PMID:26537877
Acyl-CoA synthetase-4, a new regulator of mTOR and a potential therapeutic target for enhanced estrogen receptor function in receptor-positive and -negative breast cancer. PMID:26536660
Mycoplasma Infection Alters Cancer Stem Cell Properties in Vitro. PMID:26514153
Blood transcriptomics of drug-naïve sporadic Parkinson's disease patients. PMID:26510930
A survey of computational tools for downstream analysis of proteomic and other omic datasets. PMID:26510531
Gene expression profiling of brakeless mutant Drosophila embryos. PMID:26509186
Genome-wide identification of microRNAs regulating cholesterol and triglyceride homeostasis. PMID:26501192
Five miRNAs Considered as Molecular Targets for Predicting Esophageal Cancer. PMID:26498375
Genome-wide DNA methylome variation in two genetically distinct chicken lines using MethylC-seq. PMID:26497311
Copy number variations in the genome of the Qatari population. PMID:26490036
Integrated Analysis Reveals together miR-182, miR-200c and miR-221 Can Help in the Diagnosis of Prostate Cancer. PMID:26484677
Gene expression profiling can predict the fate of HeLa cells exposed to X-ray irradiation with or without protoporphyrin accumulation. PMID:26484254
Gene expression profiling by high throughput sequencing to determine signatures for the bovine receptive uterus at early gestation. PMID:26484233
Technical data of the transcriptomic analysis performed on tsetse fly symbionts, Sodalis glossinidius and Wigglesworthia glossinidia, harbored, respectively by non-infected, Trypanosoma brucei gambiense infected and self-cured Glossina palpalis gambiensis tsetse flies. PMID:26484198
Transcriptional profiling of the postnatal brain of the Ts1Cje mouse model of Down syndrome. PMID:26484118
Cyclosporin A induced toxicity in mouse liver slices is only slightly aggravated by Fxr-deficiency and co-occurs with upregulation of pro-inflammatory genes and downregulation of genes involved in mitochondrial functions. PMID:26482353
Understanding the molecular aspects of oriental obesity pattern differentiation using DNA microarray. PMID:26482123
Comparative proteomic analysis of plasma from bipolar depression and depressive disorder: identification of proteins associated with immune regulatory. PMID:26475628
Gene expression profiling of the human natural killer cell response to Fc receptor activation: unique enhancement in the presence of interleukin-12. PMID:26470881
New Perspectives for the Rescue of Cognitive Disability in Down Syndrome. PMID:26468184
Recurrent Glioblastomas Reveal Molecular Subtypes Associated with Mechanistic Implications of Drug-Resistance. PMID:26466313
Kelch Domain of Gigaxonin Interacts with Intermediate Filament Proteins Affected in Giant Axonal Neuropathy. PMID:26460568
Evidence for Adaptation to the Tibetan Plateau Inferred from Tibetan Loach Transcriptomes. PMID:26454018
Transcriptome profile of liver at different physiological stages reveals potential mode for lipid metabolism in laying hens. PMID:26452545
Association between in vivo bone formation and ex vivo migratory capacity of human bone marrow stromal cells. PMID:26450135
Kinase Identification with Supervised Laplacian Regularized Least Squares. PMID:26448296
PTTG1 expression is associated with hyperproliferative disease and poor prognosis in multiple myeloma. PMID:26445238
Monocyte enhancers are highly altered in systemic lupus erythematosus. PMID:26442457
Targeting downstream transcription factors and epigenetic modifications following Toll-like receptor 7/8 ligation to forestall tissue injury in anti-Ro60 associated heart block. PMID:26432597
SILAC-based quantification of changes in protein tyrosine phosphorylation induced by Interleukin-2 (IL-2) and IL-15 in T-lymphocytes. PMID:26425665
The DNA damage response induces inflammation and senescence by inhibiting autophagy of GATA4. PMID:26404840
Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci. PMID:26402605
Isolated Rat Epididymal Basal Cells Share Common Properties with Adult Stem Cells. PMID:26400399
Nitric oxide as a regulator of B. anthracis pathogenicity. PMID:26388860
Adaptation of Lactococcus lactis to high growth temperature leads to a dramatic increase in acidification rate. PMID:26388459
Reconstruction of novel transcription factor regulons through inference of their binding sites. PMID:26388177
Helveticoside is a biologically active component of the seed extract of Descurainia sophia and induces reciprocal gene regulation in A549 human lung cancer cells. PMID:26384484
Gene function analysis in osteosarcoma based on microarray gene expression profiling. PMID:26379830
Meta-Analysis of Microarray Data of Rainbow Trout Fry Gonad Differentiation Modulated by Ethynylestradiol. PMID:26379055
Identification of candidate gonadal sex differentiation genes in the chicken embryo using RNA-seq. PMID:26377738
Transcriptional profiling of differentially vulnerable motor neurons at pre-symptomatic stage in the Smn (2b/-) mouse model of spinal muscular atrophy. PMID:26374403
Social Regulation of Gene Expression in Threespine Sticklebacks. PMID:26367311
A new approach for investigating venom function applied to venom calreticulin in a parasitoid wasp. PMID:26359852
Multiple sources of bias confound functional enrichment analysis of global -omics data. PMID:26346307
Sympatric speciation revealed by genome-wide divergence in the blind mole rat Spalax. PMID:26340990
Meta-Analysis of Large-Scale Toxicogenomic Data Finds Neuronal Regeneration Related Protein and Cathepsin D to Be Novel Biomarkers of Drug-Induced Toxicity. PMID:26335687
Virus-encoded microRNA contributes to the molecular profile of EBV-positive Burkitt lymphomas. PMID:26325594
Profiling of promoter occupancy by the SND1 transcriptional coactivator identifies downstream glycerolipid metabolic genes involved in TNFα response in human hepatoma cells. PMID:26323317
Aging-Dependent Demethylation of Regulatory Elements Correlates with Chromatin State and Improved β Cell Function. PMID:26321660
miR-9-5p suppresses pro-fibrogenic transformation of fibroblasts and prevents organ fibrosis by targeting NOX4 and TGFBR2. PMID:26315535
The exosome controls alternative splicing by mediating the gene expression and assembly of the spliceosome complex. PMID:26306464
Genome-wide errant targeting by Hairy. PMID:26305409
Bifidobacteria grown on human milk oligosaccharides downregulate the expression of inflammation-related genes in Caco-2 cells. PMID:26303932
Whole-transcriptome analysis of flow-sorted cervical cancer samples reveals that B cell expressed TCL1A is correlated with improved survival. PMID:26299617
A whole genomic scan to detect selection signatures between Berkshire and Korean native pig breeds. PMID:26290712
Comparative two-dimensional polyacrylamide gel electrophoresis of the salivary proteome of children with autism spectrum disorder. PMID:26290361
MVDA: a multi-view genomic data integration methodology. PMID:26283178
Potential anti-cancer effect of curcumin in human lung squamous cell carcinoma. PMID:26273408
Unique Toll-Like Receptor 4 Activation by NAMPT/PBEF Induces NFκB Signaling and Inflammatory Lung Injury. PMID:26272519
Integrated analysis of miRNA/mRNA network in placenta identifies key factors associated with labor onset of Large White and Qingping sows. PMID:26272496
Circulating microRNAs as Potential Biomarkers of Endothelial Dysfunction in Obese Children. PMID:26270249
Identifying miRNA/mRNA negative regulation pairs in colorectal cancer. PMID:26269151
Five miRNAs considered as molecular targets for predicting neuroglioma. PMID:26269115
A simplicial complex-based approach to unmixing tumor progression data. PMID:26264682
SPINK1 promotes colorectal cancer progression by downregulating Metallothioneins expression. PMID:26258891
Fibrinogen production is enhanced in an in-vitro model of non-alcoholic fatty liver disease: an isolated risk factor for cardiovascular events? PMID:26256740
An epigenomic role of Fe65 in the cellular response to DNA damage. PMID:26255939
Systems toxicology identifies mechanistic impacts of 2-amino-4,6-dinitrotoluene (2A-DNT) exposure in Northern Bobwhite. PMID:26251320
Mechanism of Cisplatin-Induced Cytotoxicity Is Correlated to Impaired Metabolism Due to Mitochondrial ROS Generation. PMID:26247588
In-depth analysis of the critical genes and pathways in colorectal cancer. PMID:26239303
A comparative analysis of host responses to avian influenza infection in ducks and chickens highlights a role for the interferon-induced transmembrane proteins in viral resistance. PMID:26238195
mRIN for direct assessment of genome-wide and gene-specific mRNA integrity from large-scale RNA-sequencing data. PMID:26234653
Gene expression profiling of ovarian carcinomas and prognostic analysis of outcome. PMID:26228058
Biological processes and pathway changes in isoflurane-induced anesthesia revealed by bioinformatics analysis of gene expression profiles. PMID:26223573
Transcriptomic changes in mouse embryonic stem cells exposed to thalidomide during spontaneous differentiation. PMID:26217789
Deletion of low molecular weight protein tyrosine phosphatase (Acp1) protects against stress-induced cardiomyopathy. PMID:26213100
Global Proteomic Analysis of Functional Compartments in Immature Avian Follicles Using Laser Microdissection Coupled to LC-MS/MS. PMID:26211554
A mutation profile for top-k patient search exploiting Gene-Ontology and orthogonal non-negative matrix factorization. PMID:26209432
The homeobox gene DLX4 regulates erythro-megakaryocytic differentiation by stimulating IL-1β and NF-κB signaling. PMID:26208636
KnowEnG: a knowledge engine for genomics. PMID:26205246
Combined serial analysis of gene expression and transcription factor binding site prediction identifies novel-candidate-target genes of Nr2e1 in neocortex development. PMID:26204903
How data analysis affects power, reproducibility and biological insight of RNA-seq studies in complex datasets. PMID:26202970
Quantitative Proteomics Reveals the Essential Roles of Stromal Interaction Molecule 1 (STIM1) in the Testicular Cord Formation in Mouse Testis. PMID:26199344
Peripheral challenge with a viral mimic upregulates expression of the complement genes in the hippocampus. PMID:26198930
A draft network of ligand-receptor-mediated multicellular signalling in human. PMID:26198319
The Orphan Nuclear Receptor TLX Is an Enhancer of STAT1-Mediated Transcription and Immunity to Toxoplasma gondii. PMID:26196739
Lipid-mediated regulation of SKN-1/Nrf in response to germ cell absence. PMID:26196144
Adaptation of a Bioinformatics Microarray Analysis Workflow for a Toxicogenomic Study in Rainbow Trout. PMID:26186543
Functional Analysis of Chicken IRF7 in Response to dsRNA Analog Poly(I:C) by Integrating Overexpression and Knockdown. PMID:26186542
FOXG1-Dependent Dysregulation of GABA/Glutamate Neuron Differentiation in Autism Spectrum Disorders. PMID:26186191
Identification of a mitochondrial defect gene signature reveals NUPR1 as a key regulator of liver cancer progression. PMID:26173068
Extracts from presumed "reduced harm" cigarettes induce equivalent or greater toxicity in antigen-presenting cells. PMID:26169828
Orbital pseudotumor can be a localized form of granulomatosis with polyangiitis as revealed by gene expression profiling. PMID:26163757
Integrative proteomics to understand the transmission mechanism of Barley yellow dwarf virus-GPV by its insect vector Rhopalosiphum padi. PMID:26161807
Genome-wide burden of deleterious coding variants increased in schizophrenia. PMID:26158538
Alterations of a Cellular Cholesterol Metabolism Network Are a Molecular Feature of Obesity-Related Type 2 Diabetes and Cardiovascular Disease. PMID:26153245
Lung Transcriptomics during Protective Ventilatory Support in Sepsis-Induced Acute Lung Injury. PMID:26147972
Comparing Two Intestinal Porcine Epithelial Cell Lines (IPECs): Morphological Differentiation, Function and Metabolism. PMID:26147118
Time-course gene profiling and networks in demethylated retinoblastoma cell line. PMID:26143641
Microarray profiling of long non-coding RNA (lncRNA) associated with hypertrophic cardiomyopathy. PMID:26141701
Combined Metabolomics and Proteomics Analysis of Major Depression in an Animal Model: Perturbed Energy Metabolism in the Chronic Mild Stressed Rat Cerebellum. PMID:26134254
Immunological Response to Single Pathogen Challenge with Agents of the Bovine Respiratory Disease Complex: An RNA-Sequence Analysis of the Bronchial Lymph Node Transcriptome. PMID:26121276
Heat-shock factor 2 is a suppressor of prostate cancer invasion. PMID:26119944
ATF4 licenses C/EBPβ activity in human mesenchymal stem cells primed for adipogenesis. PMID:26111340
Vitamin B12 modulates the transcriptome of the skin microbiota in acne pathogenesis. PMID:26109103
Divergence of dim-light vision among bats (order: Chiroptera) as estimated by molecular and electrophysiological methods. PMID:26100095
Network-based survival-associated module biomarker and its crosstalk with cell death genes in ovarian cancer. PMID:26099452
Differential activation of immune/inflammatory response-related co-expression modules in the hippocampus across the major psychiatric disorders. PMID:26077692
PAGER: constructing PAGs and new PAG-PAG relationships for network biology. PMID:26072489
Genomic characteristics of miscarriage copy number variants. PMID:26071097
Disruption of Mitochondrion-To-Nucleus Interaction in Deceased Cloned Piglets. PMID:26067091
Lysosome and Cytoskeleton Pathways Are Robustly Enriched in the Blood of Septic Patients: A Meta-Analysis of Transcriptomic Data. PMID:26063982
Ribosome profiling reveals translation control as a key mechanism generating differential gene expression in Trypanosoma cruzi. PMID:26054634
A Search for Parent-of-Origin Effects on Honey Bee Gene Expression. PMID:26048562
Memory acquisition and retrieval impact different epigenetic processes that regulate gene expression. PMID:26040834
Integrative network-based approach identifies key genetic elements in breast invasive carcinoma. PMID:26040466
A new mib allele with a chromosomal deletion covering foxc1a exhibits anterior somite specification defect. PMID:26039894
Epigenetic and oncogenic regulation of SLC16A7 (MCT2) results in protein over-expression, impacting on signalling and cellular phenotypes in prostate cancer. PMID:26035357
Transcription factor p63 bookmarks and regulates dynamic enhancers during epidermal differentiation. PMID:26034101
A fluorescent bimolecular complementation screen reveals MAF1, RNF7 and SETD3 as PCNA-associated proteins in human cells. PMID:26030842
Prmt5 is a regulator of muscle stem cell expansion in adult mice. PMID:26028225
Variation analysis of transcriptome changes reveals cochlear genes and their associated functions in cochlear susceptibility to acoustic overstimulation. PMID:26024952
Molecular insight into thiopurine resistance: transcriptomic signature in lymphoblastoid cell lines. PMID:26015807
Retinoblastoma protein promotes oxidative phosphorylation through upregulation of glycolytic genes in oncogene-induced senescent cells. PMID:26009982
Temporal gene expression profiling of the rat knee joint capsule during immobilization-induced joint contractures. PMID:26006773
From raw data to biological discoveries: a computational analysis pipeline for mass spectrometry-based proteomics. PMID:26002791
Position-specific binding of FUS to nascent RNA regulates mRNA length. PMID:25995189
Identification of targets for rational pharmacological therapy in childhood craniopharyngioma. PMID:25990246
The autism-associated gene chromodomain helicase DNA-binding protein 8 (CHD8) regulates noncoding RNAs and autism-related genes. PMID:25989142
A systematic investigation based on microRNA-mediated gene regulatory network reveals that dysregulation of microRNA-19a/Cyclin D1 axis confers an oncogenic potential and a worse prognosis in human hepatocellular carcinoma. PMID:25985117
Differential expression and alternative splicing of cell cycle genes in imatinib-treated K562 cells. PMID:25983000
DNA methylation changes in the placenta are associated with fetal manganese exposure. PMID:25982381
DNA methylation temporal profiling following peripheral versus central nervous system axotomy. PMID:25977793
Effects of valproic acid and dexamethasone administration on early bio-markers and gene expression profile in acute kidney ischemia-reperfusion injury in the rat. PMID:25970334
Genome-wide gene expression analysis for target genes to differentiate patients with intestinal tuberculosis and Crohn's disease and discriminative value of FOXP3 mRNA expression. PMID:25969456
Improving the Understanding of Pathogenesis of Human Papillomavirus 16 via Mapping Protein-Protein Interaction Network. PMID:25961044
RNA-Seq versus oligonucleotide array assessment of dose-dependent TCDD-elicited hepatic gene expression in mice. PMID:25958198
Identification of transcriptional factors and key genes in primary osteoporosis by DNA microarray. PMID:25957414
Transcriptional changes associated with resistance to inhibitors of epidermal growth factor receptor revealed using metaanalysis. PMID:25948104
Host Response to the Lung Microbiome in Chronic Obstructive Pulmonary Disease. PMID:25945594
Construction and Analysis of the Cell Surface's Protein Network for Human Sperm-Egg Interaction. PMID:25937952
Deciphering the pharmacological mechanism of the Chinese formula huanglian-jie-du decoction in the treatment of ischemic stroke using a systems biology-based strategy. PMID:25937634
Dysregulated mechanisms underlying Duchenne muscular dystrophy from co-expression network preservation analysis. PMID:25935398
Comprehensive analysis of glycolytic enzymes as therapeutic targets in the treatment of glioblastoma. PMID:25932951
Wilms' tumor gene 1 regulates p63 and promotes cell proliferation in squamous cell carcinoma of the head and neck. PMID:25929687
Destabilization of pluripotency in the absence of Mad2l2. PMID:25928475
Transcriptional profiling of PRKG2-null growth plate identifies putative down-stream targets of PRKG2. PMID:25924610
A machine learning heuristic to identify biologically relevant and minimal biomarker panels from omics data. PMID:25923811
Argonaute 2 Binds Directly to tRNA Genes and Promotes Gene Repression in cis. PMID:25918241
Parameter optimization for constructing competing endogenous RNA regulatory network in glioblastoma multiforme and other cancers. PMID:25917195
Discrete domains of gene expression in germinal layers distinguish the development of gyrencephaly. PMID:25916825
Inferring data-specific micro-RNA function through the joint ranking of micro-RNA and pathways from matched micro-RNA and gene expression data. PMID:25910695
Identification of MicroRNAs and their Targets Associated with Embryo Abortion during Chrysanthemum Cross Breeding via High-Throughput Sequencing. PMID:25909659
Comparative proteomic analyses demonstrate enhanced interferon and STAT-1 activation in reovirus T3D-infected HeLa cells. PMID:25905045
Ataxin-2 regulates RGS8 translation in a new BAC-SCA2 transgenic mouse model. PMID:25902068
Evolving transcriptomic fingerprint based on genome-wide data as prognostic tools in prostate cancer. PMID:25900404
Transcriptomic profiles of aging in purified human immune cells. PMID:25898983
Interactions between horizontally acquired genes create a fitness cost in Pseudomonas aeruginosa. PMID:25897488
Global liver gene expression differences in Nelore steers with divergent residual feed intake phenotypes. PMID:25887532
Extraction of relations between genes and diseases from text and large-scale data analysis: implications for translational research. PMID:25886734
Exploring the genetic signature of body size in Yucatan miniature pig. PMID:25885114
Human non-small cell lung cancer expresses putative cancer stem cell markers and exhibits the transcriptomic profile of multipotent cells. PMID:25881239
Parallel Gene Expression Changes in Sarcoidosis Involving the Lacrimal Gland, Orbital Tissue, or Blood. PMID:25880323
Vaccinia Virus Infection Requires Maturation of Macropinosomes. PMID:25869659
Discover the molecular biomarker associated with cell death and extracellular matrix module in ovarian cancer. PMID:25861644
Effective population size, extended linkage disequilibrium and signatures of selection in the rare dog breed lundehund. PMID:25860808
Characterization of the kidney transcriptome of the long-haired mouse Abrothrix hirta (Rodentia, Sigmodontinae) and comparison with that of the olive mouse A. olivacea. PMID:25860131
Controlled induction of DNA double-strand breaks in the mouse liver induces features of tissue ageing. PMID:25858675
Transcriptomic profiling of linolenic acid-responsive genes in ROS signaling from RNA-seq data in Arabidopsis. PMID:25852698
MPTP's pathway of toxicity indicates central role of transcription factor SP1. PMID:25851821
The transcriptome signature of the receptive bovine uterus determined at early gestation. PMID:25849079
A survey of current trends in computational drug repositioning. PMID:25832646
MicroRNA profiling of CD3+ CD56+ cytokine-induced killer cells. PMID:25826780
Whole-genome association analysis of treatment response in obsessive-compulsive disorder. PMID:25824302
An integrated analysis of the effects of microRNA and mRNA on esophageal squamous cell carcinoma. PMID:25823933
Uncovering pharmacological mechanisms of Wu-tou decoction acting on rheumatoid arthritis through systems approaches: drug-target prediction, network analysis and experimental validation. PMID:25820382
Direct involvement of retinoblastoma family proteins in DNA repair by non-homologous end-joining. PMID:25818292
Evidence that MHC I-E dampens thyroid autoantibodies and prevents spreading to a second thyroid autoantigen in I-A(k) NOD mice. PMID:25811933
Functional genomic analysis identifies indoxyl sulfate as a major, poorly dialyzable uremic toxin in end-stage renal disease. PMID:25811877
ABCG2 localizes to the nucleus and modulates CDH1 expression in lung cancer cells. PMID:25810011
Stromal transcriptional profiles reveal hierarchies of anatomical site, serum response and disease and identify disease specific pathways. PMID:25807374
Constraints, independence, and evolution of thermal plasticity: probing genetic architecture of long- and short-term thermal acclimation. PMID:25805817
Personal genomes, quantitative dynamic omics and personalized medicine. PMID:25798291
Adoption of clinical decision support in multimorbidity: a systematic review. PMID:25785897
Network-based proteomic approaches reveal the neurodegenerative, neuroprotective and pain-related mechanisms involved after retrograde axonal damage. PMID:25784190
Microbial forensics: predicting phenotypic characteristics and environmental conditions from large-scale gene expression profiles. PMID:25774498
Mitochondrial and nuclear accumulation of the transcription factor ATFS-1 promotes OXPHOS recovery during the UPR(mt). PMID:25773600
Time-restricted feeding attenuates age-related cardiac decline in Drosophila. PMID:25766238
Selective coregulator function and restriction of steroid receptor chromatin occupancy by Hic-5. PMID:25763609
A search for protein biomarkers links olfactory signal transduction to social immunity. PMID:25757461
Network-based approach to identify prognostic biomarkers for estrogen receptor-positive breast cancer treatment with tamoxifen. PMID:25756514
Scoring Large-Scale Affinity Purification Mass Spectrometry Datasets with MiST. PMID:25754993
Genome-Wide Analysis of ChREBP Binding Sites on Male Mouse Liver and White Adipose Chromatin. PMID:25751637
The relative vertex clustering value--a new criterion for the fast discovery of functional modules in protein interaction networks. PMID:25734691
Mutations in early follicular lymphoma progenitors are associated with suppressed antigen presentation. PMID:25713363
Synergistic and antagonistic interplay between myostatin gene expression and physical activity levels on gene expression patterns in triceps Brachii muscles of C57/BL6 mice. PMID:25710176
CD14 and complement crosstalk and largely mediate the transcriptional response to Escherichia coli in human whole blood as revealed by DNA microarray. PMID:25706641
Detecting key genes regulated by miRNAs in dysfunctional crosstalk pathway of myasthenia gravis. PMID:25705681
Zic2 is an enhancer-binding factor required for embryonic stem cell specification. PMID:25699711
Structural and biochemical changes underlying a keratoderma-like phenotype in mice lacking suprabasal AP1 transcription factor function. PMID:25695600
Screening for characteristic microRNAs between pre-invasive and invasive stages of cervical cancer. PMID:25695263
Bovine milk proteome in the first 9 days: protein interactions in maturation of the immune and digestive system of the newborn. PMID:25693162
Gene expression-based classifications of fibroadenomas and phyllodes tumours of the breast. PMID:25687451
The amniotic fluid transcriptome as a guide to understanding fetal disease. PMID:25680981
Defining the phospho-adhesome through the phosphoproteomic analysis of integrin signalling. PMID:25677187
Expression profiling of preadipocyte microRNAs by deep sequencing on chicken lines divergently selected for abdominal fatness. PMID:25675096
Quantification of extracellular matrix proteins from a rat lung scaffold to provide a molecular readout for tissue engineering. PMID:25660013
mRNA expression profiles in circulating tumor cells of metastatic colorectal cancer patients. PMID:25655581
Deficiency of Capicua disrupts bile acid homeostasis. PMID:25653040
BACA: bubble chArt to compare annotations. PMID:25652236
Integrative genomics and transcriptomics analysis of human embryonic and induced pluripotent stem cells. PMID:25649046
Methylated microRNA genes of the developing murine palate. PMID:25642850
The role of DNA insertions in phenotypic differentiation between humans and other primates. PMID:25635043
Genome-wide detection and characterization of positive selection in Korean Native Black Pig from Jeju Island. PMID:25634476
Identification of the differentially expressed genes associated with familial combined hyperlipidemia using bioinformatics analysis. PMID:25625967
NOB1 is essential for the survival of RKO colorectal cancer cells. PMID:25624720
Highly constrained intergenic Drosophila ultraconserved elements are candidate ncRNAs. PMID:25618141
Effects of an 11-nm DMSA-coated iron nanoparticle on the gene expression profile of two human cell lines, THP-1 and HepG2. PMID:25595381
Cigarette smoking hinders human periodontal ligament-derived stem cell proliferation, migration and differentiation potentials. PMID:25591783
Epigenome-wide analysis of piRNAs in gene-specific DNA methylation. PMID:25590657
Regulation of monocyte/macrophage polarisation by extracellular RNA. PMID:25589344
Sex-related gene expression profiles in the adrenal cortex in the mature rat: microarray analysis with emphasis on genes involved in steroidogenesis. PMID:25572386
Resistin-Like Molecule α in Allergen-Induced Pulmonary Vascular Remodeling. PMID:25569618
Myeloid decidual dendritic cells and immunoregulation of pregnancy: defective responsiveness to Coxiella burnetii and Brucella abortus. PMID:25566514
Application of quantitative trait locus mapping and transcriptomics to studies of the senescence-accelerated phenotype in rats. PMID:25563673
EvoTol: a protein-sequence based evolutionary intolerance framework for disease-gene prioritization. PMID:25550428
Human PrimPol is a highly error-prone polymerase regulated by single-stranded DNA binding proteins. PMID:25550423
Transcriptome analysis of Enterococcus faecalis during mammalian infection shows cells undergo adaptation and exist in a stringent response state. PMID:25545155
Comprehensive transcriptome analysis reveals accelerated genic evolution in a Tibet fish, Gymnodiptychus pachycheilus. PMID:25543049
Aberrant expression of long noncoding RNAs in chronic thromboembolic pulmonary hypertension. PMID:25522749
Complex-based analysis of dysregulated cellular processes in cancer. PMID:25521701
Dauer-independent insulin/IGF-1-signalling implicates collagen remodelling in longevity. PMID:25517099
Identification of skin-expressed genes possibly associated with wool growth regulation of Aohan fine wool sheep. PMID:25511509
Transcriptomic signatures of peroxisome proliferator-activated receptor α (PPARα) in different mouse liver models identify novel aspects of its biology. PMID:25511156
Hepatic farnesoid X-receptor isoforms α2 and α4 differentially modulate bile salt and lipoprotein metabolism in mice. PMID:25506828
Cell-type specific transcriptomic profiling to dissect mechanisms of differential dendritogenesis. PMID:25506553
Dexmedetomidine preconditioning ameliorates kidney ischemia-reperfusion injury. PMID:25505591
Identification of nuclear hormone receptor pathways causing insulin resistance by transcriptional and epigenomic analysis. PMID:25503565
Kinome-wide screening of HER2+ breast cancer cells for molecules that mediate cell proliferation or sensitize cells to trastuzumab therapy. PMID:25500906
Immunology of bats and their viruses: challenges and opportunities. PMID:25494448
Natural Variation in Fish Transcriptomes: Comparative Analysis of the Fathead Minnow (Pimephales promelas) and Zebrafish (Danio rerio). PMID:25493933
Inactivation of the budding yeast cohesin loader Scc2 alters gene expression both globally and in response to a single DNA double strand break. PMID:25483075
Mapping genetic contributions to cardiac pathology induced by Beta-adrenergic stimulation in mice. PMID:25480693
Comparative transcriptome analysis reveals early pregnancy-specific genes expressed in peripheral blood of pregnant sows. PMID:25479131
Comparison of Metabolic Network between Muscle and Intramuscular Adipose Tissues in Hanwoo Beef Cattle Using a Systems Biology Approach. PMID:25478565
Epigenome-guided analysis of the transcriptome of plaque macrophages during atherosclerosis regression reveals activation of the Wnt signaling pathway. PMID:25474352
Patterns of gene expression associated with recovery and injury in heat-stressed rats. PMID:25471284
Integrative analysis of young genes, positively selected genes and lncRNAs in the development of Drosophila melanogaster. PMID:25470998
Early transcriptional changes in the reef-building coral Acropora aspera in response to thermal and nutrient stress. PMID:25467196
Stage-specific signaling pathways during murine testis development and spermatogenesis: A pathway-based analysis to quantify developmental dynamics. PMID:25463528
The novel small leucine-rich protein chondroadherin-like (CHADL) is expressed in cartilage and modulates chondrocyte differentiation. PMID:25451920
Transcriptome organization for chronic alcohol abuse in human brain. PMID:25450227
Alzheimer's disease is associated with altered expression of genes involved in immune response and mitochondrial processes in astrocytes. PMID:25448601
De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets. PMID:25442502
Gene expression microarray analysis of the sciatic nerve of mice with diabetic neuropathy. PMID:25435094
Expression profiling of circulating tumor cells in metastatic breast cancer. PMID:25432738
Comprehensive analysis of microRNA-regulated protein interaction network reveals the tumor suppressive role of microRNA-149 in human hepatocellular carcinoma via targeting AKT-mTOR pathway. PMID:25424347
Proteomics-Based Identification of Differentially Abundant Proteins from Human Keratinocytes Exposed to Arsenic Trioxide. PMID:25419056
Interferon regulatory factor 1 marks activated genes and can induce target gene expression in systemic lupus erythematosus. PMID:25418955
Ets homologous factor regulates pathways controlling response to injury in airway epithelial cells. PMID:25414352
Kismet positively regulates glutamate receptor localization and synaptic transmission at the Drosophila neuromuscular junction. PMID:25412171
A comprehensive analysis of candidate genes and pathways in pancreatic cancer. PMID:25409614
Epigenetic and in vivo comparison of diverse MSC sources reveals an endochondral signature for human hematopoietic niche formation. PMID:25406351
Computational surprisal analysis speeds-up genomic characterization of cancer processes. PMID:25405334
Age-related variations in the methylome associated with gene expression in human monocytes and T cells. PMID:25404168
miR-125b can enhance skin tumor initiation and promote malignant progression by repressing differentiation and prolonging cell survival. PMID:25403182
Acute targeting of general transcription factor IIB restricts cardiac hypertrophy via selective inhibition of gene transcription. PMID:25398966
Genome-wide microarray expression and genomic alterations by array-CGH analysis in neuroblastoma stem-like cells. PMID:25392930
Learning dysregulated pathways in cancers from differential variability analysis. PMID:25392694
Noise exposure immediately activates cochlear mitogen-activated protein kinase signaling. PMID:25387536
Calcifying vascular smooth muscle cells and osteoblasts: independent cell types exhibiting extracellular matrix and biomineralization-related mimicries. PMID:25380738
Proteomic analysis of human plasma in chronic rheumatic mitral stenosis reveals proteins involved in the complement and coagulation cascade. PMID:25379033
Docetaxel-loaded solid lipid nanoparticles suppress breast cancer cells growth with reduced myelosuppression toxicity. PMID:25378924
The Arabidopsis Mediator CDK8 module genes CCT (MED12) and GCT (MED13) are global regulators of developmental phase transitions. PMID:25377553
The Vibrio cholerae Cpx envelope stress response senses and mediates adaptation to low iron. PMID:25368298
Molecular profiling and computational network analysis of TAZ-mediated mammary tumorigenesis identifies actionable therapeutic targets. PMID:25361000
Mating system variation drives rapid evolution of the female transcriptome in Drosophila pseudoobscura. PMID:25360260
Pathogenesis analysis of pituitary adenoma based on gene expression profiling. PMID:25360166
COE loss-of-function analysis reveals a genetic program underlying maintenance and regeneration of the nervous system in planarians. PMID:25356635
Establishment of a proteome profile and identification of molecular markers for mouse spermatogonial stem cells. PMID:25352495
Expression analysis of the estrogen receptor target genes in renal cell carcinoma. PMID:25351113
Proteins associated with pancreatic cancer survival in patients with resectable pancreatic ductal adenocarcinoma. PMID:25347153
Quantitative proteomics of the human skin secretome reveal a reduction in immune defense mediators in ectodermal dysplasia patients. PMID:25347115
Short Gel, Long Gradient Liquid Chromatography Tandem Mass Spectrometry to Discover Urinary Biomarkers of Chronic Pancreatitis. PMID:25346780
Expression profile of Caenorhabditis elegans mutant for the Werner syndrome gene ortholog reveals the impact of vitamin C on development to increase life span. PMID:25346348
Understanding disease mechanisms with models of signaling pathway activities. PMID:25344409
Co-expression analysis of differentially expressed genes in hepatitis C virus-induced hepatocellular carcinoma. PMID:25339452
Changes in renal medulla gene expression in a pre-clinical model of post cardiopulmonary bypass acute kidney injury. PMID:25331815
Whole proteome analysis of mouse lymph nodes in cutaneous anthrax. PMID:25329596
A genome-wide scan for selection signatures in Yorkshire and Landrace pigs based on sequencing data. PMID:25327778
Identification of potential genomic biomarkers for Sjögren's syndrome using data pooling of gene expression microarrays. PMID:25327574
Transcriptomic portrait of human Mesenchymal Stromal/Stem Cells isolated from bone marrow and placenta. PMID:25326687
Blood-based gene-expression biomarkers of post-traumatic stress disorder among deployed marines: A pilot study. PMID:25311155
Disruption of microRNA-21 by TALEN leads to diminished cell transformation and increased expression of cell-environment interaction genes. PMID:25304376
Divergence of RNA localization between rat and mouse neurons reveals the potential for rapid brain evolution. PMID:25301173
Benzo pyrene-induced DNA adducts and gene expression profiles in target and non-target organs for carcinogenesis in mice. PMID:25297811
A bayesian integrative model for genetical genomics with spatially informed variable selection. PMID:25288877
Molecular mechanism underlying the impact of vitamin D on disease activity of MS. PMID:25285313
A Proteomic Study of Human Merkel Cell Carcinoma. PMID:25284964
H3K4me1 marks DNA regions hypomethylated during aging in human stem and differentiated cells. PMID:25271306
Integrated omic analysis of oropharyngeal carcinomas reveals human papillomavirus (HPV)-dependent regulation of the activator protein 1 (AP-1) pathway. PMID:25271301
In-depth quantitative proteomic analysis of de novo protein synthesis induced by brain-derived neurotrophic factor. PMID:25271054
Differential microRNA expression following infection with a mouse-adapted, highly virulent avian H5N2 virus. PMID:25266911
Comparative iron oxide nanoparticle cellular dosimetry and response in mice by the inhalation and liquid cell culture exposure routes. PMID:25266609
Dopamine signaling leads to loss of Polycomb repression and aberrant gene activation in experimental parkinsonism. PMID:25254549
The over-expression of aquaporin-1 alters erythroid gene expression in human erythroleukemia K562 cells. PMID:25252847
Proteomic study reveals a functional network of cancer markers in the G1-Stage of the breast cancer cell cycle. PMID:25252636
Genetic and epigenetic changes in chromosomally stable and unstable progeny of irradiated cells. PMID:25251398
Nova1 is a master regulator of alternative splicing in pancreatic beta cells. PMID:25249621
Endometrial gene expression reveals compromised progesterone signaling in women refractory to embryo implantation. PMID:25248672
Identification of copy number variations in Qinchuan cattle using BovineHD Genotyping Beadchip array. PMID:25248638
Transcriptomic characterization of C57BL/6 mouse embryonic stem cell differentiation and its modulation by developmental toxicants. PMID:25247782
Correlation between DNA methylation and gene expression in the brains of patients with bipolar disorder and schizophrenia. PMID:25243493
IsomiR expression profiles in human lymphoblastoid cell lines exhibit population and gender dependencies. PMID:25229428
Profiling human protein degradome delineates cellular responses to proteasomal inhibition and reveals a feedback mechanism in regulating proteasome homeostasis. PMID:25223703
The clinicopathological and gene expression patterns associated with ulceration of primary melanoma. PMID:25220403
The influence of mtDNA deletion on lung cancer cells under the conditions of hypoxia and irradiation. PMID:25218334
The forkhead transcription factor FOXM1 promotes endocrine resistance and invasiveness in estrogen receptor-positive breast cancer by expansion of stem-like cancer cells. PMID:25213081
LCK: a new biomarker candidate for the early diagnosis of acute myocardial infarction. PMID:25209966
Gene expression profiles on predicting protein interaction network and exploring of new treatments for lung cancer. PMID:25205123
Lipid droplet protein LID-1 mediates ATGL-1-dependent lipolysis during fasting in Caenorhabditis elegans. PMID:25202121
Liver transcriptome analysis in gilthead sea bream upon exposure to low temperature. PMID:25194679
Systematic transcriptome analysis of the zebrafish model of diamond-blackfan anemia induced by RPS24 deficiency. PMID:25189322
Differential transcriptional effects of EGFR inhibitors. PMID:25184905
Identifying candidate genes for discrimination of ulcerative colitis and Crohn's disease. PMID:25182475
Predictive urinary biomarkers for steroid-resistant and steroid-sensitive focal segmental glomerulosclerosis using high resolution mass spectrometry and multivariate statistical analysis. PMID:25182141
Copy number deletion has little impact on gene expression levels in racehorses. PMID:25178379
Synovial phenotypes in rheumatoid arthritis correlate with response to biologic therapeutics. PMID:25167216
The genomic architecture of population divergence between subspecies of the European rabbit. PMID:25166595
A phase I study of the first-in-class antimitochondrial metabolism agent, CPI-613, in patients with advanced hematologic malignancies. PMID:25165100
Identification of molecular sub-networks associated with cell survival in a chronically SIVmac-infected human CD4+ T cell line. PMID:25163480
LincRNA-p21 regulates neointima formation, vascular smooth muscle cell proliferation, apoptosis, and atherosclerosis by enhancing p53 activity. PMID:25156994
Somatic intronic microsatellite loci differentiate glioblastoma from lower-grade gliomas. PMID:25153720
Asymmetric mRNA localization contributes to fidelity and sensitivity of spatially localized systems. PMID:25150862
Differential network analyses of Alzheimer's disease identify early events in Alzheimer's disease pathology. PMID:25147748
Dynamic modularity of host protein interaction networks in Salmonella Typhi infection. PMID:25144185
ATF3 and extracellular matrix-related genes associated with the process of chronic obstructive pulmonary. PMID:25119290
SILAC-based proteomic profiling of the human MDA-MB-231 metastatic breast cancer cell line in response to the two antitumoral lactoferrin isoforms: the secreted lactoferrin and the intracellular delta-lactoferrin. PMID:25116916
Global transcriptome profiling of genes that are differentially regulated during differentiation of mouse embryonic neural stem cells into astrocytes. PMID:25104607
Proteomic alteration of PK-15 cells after infection by porcine circovirus type 2. PMID:25103791
Argonaute CLIP-Seq reveals miRNA targetome diversity across tissue types. PMID:25103560
A network-based approach to dissect the cilia/centrosome complex interactome. PMID:25102769
Predicting response and survival in chemotherapy-treated triple-negative breast cancer. PMID:25101563
High quality RNA in semen and sperm: isolation, analysis and potential application in clinical testing. PMID:25088949
Transcriptional profiling of Arabidopsis root hairs and pollen defines an apical cell growth signature. PMID:25080170
TRIM24 links glucose metabolism with transformation of human mammary epithelial cells. PMID:25065590
A Smad3 and TTF-1/NKX2-1 complex regulates Smad4-independent gene expression. PMID:25060702
Functional transcriptome analysis of the postnatal brain of the Ts1Cje mouse model for Down syndrome reveals global disruption of interferon-related molecular networks. PMID:25052193
Microarray Analysis of Gene Expression in the Uterine Endometrium during the Implantation Period in Pigs. PMID:25049669
biDCG: a new method for discovering global features of DNA microarray data via an iterative re-clustering procedure. PMID:25047553
Lhx1 maintains synchrony among circadian oscillator neurons of the SCN. PMID:25035422
Diet-dependent gene expression in honey bees: honey vs. sucrose or high fructose corn syrup. PMID:25034029
Urinary prognostic biomarkers in patients with focal segmental glomerulosclerosis. PMID:25032130
A system-level model for the microbial regulatory genome. PMID:25028489
Copy number variations and genetic admixtures in three Xinjiang ethnic minority groups. PMID:25026903
Network-based analysis identifies epigenetic biomarkers of esophageal squamous cell carcinoma progression. PMID:25015989
Fam40b is required for lineage commitment of murine embryonic stem cells. PMID:25010986
Comparative transcriptomic analysis to identify differentially expressed genes in fat tissue of adult Berkshire and Jeju Native Pig using RNA-seq. PMID:25008993
Differential effects of selective frankincense (Ru Xiang) essential oil versus non-selective sandalwood (Tan Xiang) essential oil on cultured bladder cancer cells: a microarray and bioinformatics study. PMID:25006348
Gene expression of peripheral blood cells reveals pathways downstream of glucocorticoid receptor antagonism and nab-paclitaxel treatment. PMID:25000515
Loss of Cdh1 and Trp53 in the uterus induces chronic inflammation with modification of tumor microenvironment. PMID:24998851
Generation of a foveomacular transcriptome. PMID:24991187
Human immunodeficiency virus Tat associates with a specific set of cellular RNAs. PMID:24990269
Human endogenous retrovirus-K(II) envelope induction protects neurons during HIV/AIDS. PMID:24988390
CGG repeats in RNA modulate expression of TDP-43 in mouse and fly models of fragile X tremor ataxia syndrome. PMID:24986919
Integrative analysis of independent transcriptome data for rare diseases. PMID:24981076
Multiple comparison procedures for neuroimaging genomewide association studies. PMID:24963012
Biochemical and bioinformatic methods for elucidating the role of RNA-protein interactions in posttranscriptional regulation. PMID:24951655
Selecting biologically informative genes in co-expression networks with a centrality score. PMID:24947308
Discovery of new glomerular disease-relevant genes by translational profiling of podocytes in vivo. PMID:24940801
Liver transcriptome analysis of Atlantic cod (Gadus morhua) exposed to PCB 153 indicates effects on cell cycle regulation and lipid metabolism. PMID:24939016
Selective activity of the histone deacetylase inhibitor AR-42 against leukemia stem cells: a novel potential strategy in acute myelogenous leukemia. PMID:24934933
Investigation of pathogenic genes in peri-implantitis from implant clustering failure patients: a whole-exome sequencing pilot study. PMID:24921256
Human cytomegalovirus modulates monocyte-mediated innate immune responses during short-term experimental latency in vitro. PMID:24920803
Identification and bioinformatics analysis of microRNAs associated with stress and immune response in serum of heat-stressed and normal Holstein cows. PMID:24917036
Intracellular bacteria interfere with dendritic cell functions: role of the type I interferon pathway. PMID:24915541
Integrated microRNA-mRNA analysis of coronary artery disease. PMID:24913032
Berberine moderates glucose metabolism through the GnRH-GLP-1 and MAPK pathways in the intestine. PMID:24912407
Pathway and network analysis in proteomics. PMID:24911777
Characterization of the kidney transcriptome of the South American olive mouse Abrothrix olivacea. PMID:24909751
MiningABs: mining associated biomarkers across multi-connected gene expression datasets. PMID:24909518
Cell cycle-dependent regulation of the RNA-binding protein Staufen1. PMID:24906885
Identification of overexpressed genes in Sodalis glossinidius inhabiting trypanosome-infected self-cured tsetse flies. PMID:24904565
A systematic review of microRNA expression profiling studies in human gastric cancer. PMID:24902858
Molecular aspects of adipoepithelial transdifferentiation in mouse mammary gland. PMID:24898182
The combination of transcriptomics and informatics identifies pathways targeted by miR-204 during neurogenesis and axon guidance. PMID:24895435
GO2MSIG, an automated GO based multi-species gene set generator for gene set enrichment analysis. PMID:24884810
Hypoxia alters MicroRNA expression in rat cortical pericytes. PMID:24883265
ChIP-Enrich: gene set enrichment testing for ChIP-seq data. PMID:24878920
Cyclin D activates the Rb tumor suppressor by mono-phosphorylation. PMID:24876129
Finding novel molecular connections between developmental processes and disease. PMID:24874013
Integrated proteomics identified up-regulated focal adhesion-mediated proteins in human squamous cell carcinoma in an orthotopic murine model. PMID:24858105
Comparison of the gene expression profiles of human fetal cortical astrocytes with pluripotent stem cell derived neural stem cells identifies human astrocyte markers and signaling pathways and transcription factors active in human astrocytes. PMID:24848099
Differential expression of genes and proteins associated with wool follicle cycling. PMID:24847760
The translational landscape of the splicing factor SRSF1 and its role in mitosis. PMID:24842991
Transduction motif analysis of gastric cancer based on a human signaling network. PMID:24838641
Systemic inflammatory response to smoking in chronic obstructive pulmonary disease: evidence of a gender effect. PMID:24830457
Comparison of reprogramming genes in induced pluripotent stem cells and nuclear transfer cloned embryos. PMID:24828831
Quantitative proteomic profiling reveals differentially regulated proteins in cystic fibrosis cells. PMID:24818864
Integration of molecular profiling and chemical imaging to elucidate fibroblast-microenvironment impact on cancer cell phenotype and endocrine resistance in breast cancer. PMID:24816718
Genome-wide DNA methylation analysis in dermal fibroblasts from patients with diffuse and limited systemic sclerosis reveals common and subset-specific DNA methylation aberrancies. PMID:24812288
The SLE transcriptome exhibits evidence of chronic endotoxin exposure and has widespread dysregulation of non-coding and coding RNAs. PMID:24796678
The novel diagnostic biomarkers for focal segmental glomerulosclerosis. PMID:24790760
Developmental transcriptome analysis of human erythropoiesis. PMID:24781209
Transcriptome profiling of the cancer and normal tissues from gastric cancer patients by deep sequencing. PMID:24777338
Gestational diabetes mellitus alters apoptotic and inflammatory gene expression of trophobasts from human term placenta. PMID:24768206
Optic nerve crush induces spatial and temporal gene expression patterns in retina and optic nerve of BALB/cJ mice. PMID:24767545
The transcription factor Gata6 links tissue macrophage phenotype and proliferative renewal. PMID:24762537
Molecular mechanisms of hypoxic responses via unique roles of Ras1, Cdc24 and Ptp3 in a human fungal pathogen Cryptococcus neoformans. PMID:24762475
Principles and methods of integrative genomic analyses in cancer. PMID:24759209
Essential functional modules for pathogenic and defensive mechanisms in Candida albicans infections. PMID:24757665
The ETS family member GABPα modulates androgen receptor signalling and mediates an aggressive phenotype in prostate cancer. PMID:24753418
Mouse SCNT ESCs have lower somatic mutation load than syngeneic iPSCs. PMID:24749065
Semantic Modeling for SNPs Associated with Ethnic Disparities in HapMap Samples. PMID:24748859
Interactions among mitochondrial proteins altered in glioblastoma. PMID:24728830
Genes influenced by the non-muscle isoform of Myosin light chain kinase impact human cancer prognosis. PMID:24714365
Upregulation of MMP12 and its activity by UVA1 in human skin: potential implications for photoaging. PMID:24714202
Stringent homology-based prediction of H. sapiens-M. tuberculosis H37Rv protein-protein interactions. PMID:24708540
Uncoupling reproduction from metabolism extends chronological lifespan in yeast. PMID:24706810
Conditional genetic interactions of RTT107, SLX4, and HRQ1 reveal dynamic networks upon DNA damage in S. cerevisiae. PMID:24700328
Studying the system-level involvement of microRNAs in Parkinson's disease. PMID:24690883
DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns. PMID:24690455
A network view on Parkinson's disease. PMID:24688734
The Andean adaptive toolkit to counteract high altitude maladaptation: genome-wide and phenotypic analysis of the Collas. PMID:24686296
DNA methylation subgroups and the CpG island methylator phenotype in gastric cancer: a comprehensive profiling approach. PMID:24674026
Early life perfluorooctanesulphonic acid (PFOS) exposure impairs zebrafish organogenesis. PMID:24667235
Hippocampal HDAC4 contributes to postnatal fluoxetine-evoked depression-like behavior. PMID:24663010
Analysis of protein-protein interaction network and functional modules on primary osteoporosis. PMID:24656062
Resources for functional genomics studies in Drosophila melanogaster. PMID:24653003
Long non-coding RNA and alternative splicing modulations in Parkinson's leukocytes identified by RNA sequencing. PMID:24651478
Deep sequencing-based identification of small regulatory RNAs in Synechocystis sp. PCC 6803. PMID:24647397
Integrated analysis of DNA methylation and RNA transcriptome during in vitro differentiation of human pluripotent stem cells into retinal pigment epithelial cells. PMID:24638073
Proteomics reveal energy metabolism and mitogen-activated protein kinase signal transduction perturbation in human Borna disease virus Hu-H1-infected oligodendroglial cells. PMID:24637096
Comprehensive analysis of gene expression in human retina and supporting tissues. PMID:24634144
Integration of gene expression data with network-based analysis to identify signaling and metabolic pathways regulated during the development of osteoarthritis. PMID:24630964
A method for predicting protein-protein interaction types. PMID:24625764
High-frequency stimulation of the subthalamic nucleus counteracts cortical expression of major histocompatibility complex genes in a rat model of Parkinson's disease. PMID:24621597
Shotgun MS proteomic analysis of bronchoalveolar lavage fluid in normal subjects. PMID:24616423
A comprehensive analysis of microProteins reveals their potentially widespread mechanism of transcriptional regulation. PMID:24616380
Mutations in USP9X are associated with X-linked intellectual disability and disrupt neuronal cell migration and growth. PMID:24607389
Genome-wide identification of AR-regulated genes translated in Sertoli cells in vivo using the RiboTag approach. PMID:24606126
Expression analysis of genes and pathways associated with liver metastases of the uveal melanoma. PMID:24597767
Regulation of Drosophila eye development by the transcription factor Sine oculis. PMID:24586968
Meta-analysis of pathway enrichment: combining independent and dependent omics data sets. PMID:24586671
Genome-wide DNA methylation patterns in naive CD4+ T cells from patients with primary Sjögren's syndrome. PMID:24574234
Characterizing the genetic basis of methylome diversity in histologically normal human lung tissue. PMID:24572595
Dysferlin mediates the cytoprotective effects of TRAF2 following myocardial ischemia reperfusion injury. PMID:24572254
Stringent DDI-based prediction of H. sapiens-M. tuberculosis H37Rv protein-protein interactions. PMID:24564941
Gene expression analysis of induced pluripotent stem cells from aneuploid chromosomal syndromes. PMID:24564826
A systems biology-based investigation into the therapeutic effects of Gansui Banxia Tang on reversing the imbalanced network of hepatocellular carcinoma. PMID:24561634
Peripheral nerve morphogenesis induced by scaffold micropatterning. PMID:24559639
Complete dosage compensation and sex-biased gene expression in the moth Manduca sexta. PMID:24558255
Network analysis of neurodegenerative disease highlights a role of Toll-like receptor signaling. PMID:24551850
Cell surface proteomics analysis indicates a neural lineage bias of rat bone marrow mesenchymal stromal cells. PMID:24551847
Unique features of the transcriptional response to model aneuploidy in human cells. PMID:24548329
A system-level pathway-phenotype association analysis using synthetic feature random forest. PMID:24535726
Discovery of consensus gene signature and intermodular connectivity defining self-renewal of human embryonic stem cells. PMID:24519983
Growth factor priming differentially modulates components of the extracellular matrix proteome in chondrocytes and synovium-derived stem cells. PMID:24516581
Protein signatures of oxidative stress response in a patient specific cell line model for autism. PMID:24512814
Selective nuclear export of specific classes of mRNA from mammalian nuclei is promoted by GANP. PMID:24510098
DFLAT: functional annotation for human development. PMID:24507166
Differential induction of TLR3-dependent innate immune signaling by closely related parasite species. PMID:24505488
Abnormal gene expression and gene fusion in lung adenocarcinoma with high-throughput RNA sequencing. PMID:24503571
c-Myc-dependent transcriptional regulation of cell cycle and nucleosomal histones during oligodendrocyte differentiation. PMID:24502923
Genomic changes under rapid evolution: selection for parasitoid resistance. PMID:24500162
Investigating the different mechanisms of genotoxic and non-genotoxic carcinogens by a gene set analysis. PMID:24497971
UTX and MLL4 coordinately regulate transcriptional programs for cell proliferation and invasiveness in breast cancer cells. PMID:24491801
Model steatogenic compounds (amiodarone, valproic acid, and tetracycline) alter lipid metabolism by different mechanisms in mouse liver slices. PMID:24489787
PRMT5 is required for human embryonic stem cell proliferation but not pluripotency. PMID:24477620
Induction of polyploidy by nuclear fusion mechanism upon decreased expression of the nuclear envelope protein LAP2β in the human osteosarcoma cell line U2OS. PMID:24472424
Identifying and mapping cell-type-specific chromatin programming of gene expression. PMID:24469817
Construction of pancreatic cancer double-factor regulatory network based on chip data on the transcriptional level. PMID:24469724
Protection genes in nucleus accumbens shell affect vulnerability to nicotine self-administration across isogenic strains of adolescent rat. PMID:24465966
Genome-wide analysis of long noncoding RNA (lncRNA) expression in hepatoblastoma tissues. PMID:24465615
Review of biological network data and its applications. PMID:24465231
Pathway-based analysis of the hidden genetic heterogeneities in cancers. PMID:24462714
Impact of intramammary treatment on gene expression profiles in bovine Escherichia coli mastitis. PMID:24454893
Regulation of synaptic nlg-1/neuroligin abundance by the skn-1/Nrf stress response pathway protects against oxidative stress. PMID:24453991
Genes related to mitochondrial functions, protein degradation, and chromatin folding are differentially expressed in lymphomonocytes of Rett syndrome patients. PMID:24453408
E2F1 coregulates cell cycle genes and chromatin components during the transition of oligodendrocyte progenitors from proliferation to differentiation. PMID:24453336
Cell type-specific expression analysis to identify putative cellular mechanisms for neurogenetic disorders. PMID:24453331
Gene expression profiling of mesenteric lymph nodes from sheep with natural scrapie. PMID:24450868
Somatic deletions implicated in functional diversity of brain cells of individuals with schizophrenia and unaffected controls. PMID:24448323
ISAAC - InterSpecies Analysing Application using Containers. PMID:24428905
Alterations in lung gene expression in streptozotocin-induced diabetic rats. PMID:24423257
MicroRNAs Implicated in Dysregulation of Gene Expression Following Human Lung Transplantation. PMID:24416715
The prolyl isomerase pin1 regulates mRNA levels of genes with short half-lives by targeting specific RNA binding proteins. PMID:24416409
Sho-saiko-to, a traditional herbal medicine, regulates gene expression and biological function by way of microRNAs in primary mouse hepatocytes. PMID:24410935
Differentially expressed microRNAs in the serum of cervical squamous cell carcinoma patients before and after surgery. PMID:24405714
IL-17A mediates a selective gene expression profile in asthmatic human airway smooth muscle cells. PMID:24393021
Identification of GRB2 and GAB1 coexpression as an unfavorable prognostic factor for hepatocellular carcinoma by a combination of expression profile and network analysis. PMID:24391994
Identification of metastasis-associated genes in colorectal cancer through an integrated genomic and transcriptomic analysis. PMID:24385689
Genomic analyses across six cancer types identify basal-like breast cancer as a unique molecular entity. PMID:24384914
Pivotal role of IL-6 in the hyperinflammatory responses to subacute ozone in adiponectin-deficient mice. PMID:24381131
Lymphoid enhancer binding factor-1 (LEF1) expression as a prognostic factor in adult acute promyelocytic leukemia. PMID:24378360
Transcriptome analysis of primary monocytes from HIV-positive patients with differential responses to antiretroviral therapy. PMID:24370116
Extensive differences in gene expression between symbiotic and aposymbiotic cnidarians. PMID:24368779
PIWI proteins and PIWI-interacting RNAs function in Hydra somatic stem cells. PMID:24367095
Discovery of novel disease-specific and membrane-associated candidate markers in a mouse model of multiple sclerosis. PMID:24361864
In serum veritas-in serum sanitas? Cell non-autonomous aging compromises differentiation and survival of mesenchymal stromal cells via the oxidative stress pathway. PMID:24357801
Transcriptional profiling of hilar nodes from pigs after experimental infection with Actinobacillus pleuropneumoniae. PMID:24351863
Mechanistic phenotypes: an aggregative phenotyping strategy to identify disease mechanisms using GWAS data. PMID:24349080
The atypical mechanosensitive microRNA-712 derived from pre-ribosomal RNA induces endothelial inflammation and atherosclerosis. PMID:24346612
Integrating human omics data to prioritize candidate genes. PMID:24344781
The early phase transcriptome of bovine monocyte-derived macrophages infected with Staphylococcus aureus in vitro. PMID:24341851
A flexible statistical model for alignment of label-free proteomics data--incorporating ion mobility and product ion information. PMID:24341404
Urinary prognostic biomarkers and classification of IgA nephropathy by high resolution mass spectrometry coupled with liquid chromatography. PMID:24339887
A genome-wide association study identifies major loci affecting the immune response against infectious bronchitis virus in chicken. PMID:24333371
Thymic stromal lymphopoietin-mediated extramedullary hematopoiesis promotes allergic inflammation. PMID:24332033
Computational prediction of human salivary proteins from blood circulation and application to diagnostic biomarker identification. PMID:24324552
The ALS/FTLD-related RNA-binding proteins TDP-43 and FUS have common downstream RNA targets in cortical neurons. PMID:24319651
FUT11 as a potential biomarker of clear cell renal cell carcinoma progression based on meta-analysis of gene expression data. PMID:24318988
Phylogeny, functional annotation, and protein interaction network analyses of the Xenopus tropicalis basic helix-loop-helix transcription factors. PMID:24312906
Comprehensive analysis of gene expression profiles of the beet armyworm Spodoptera exigua larvae challenged with Bacillus thuringiensis Vip3Aa toxin. PMID:24312604
Novel insights into embryonic stem cell self-renewal revealed through comparative human and mouse systems biology networks. PMID:24307629
Screening preeclamptic cord plasma for proteins associated with decreased breast cancer susceptibility. PMID:24296084
Specification of functional cranial placode derivatives from human pluripotent stem cells. PMID:24290755
Natural variation in the histone demethylase, KDM4C, influences expression levels of specific genes including those that affect cell growth. PMID:24285722
A transcriptomic approach to elucidate the physiological significance of human cytochrome P450 2S1 in bronchial epithelial cells. PMID:24279958
HOXC9 directly regulates distinct sets of genes to coordinate diverse cellular processes during neuronal differentiation. PMID:24274069
Integrating GWASs and human protein interaction networks identifies a gene subnetwork underlying alcohol dependence. PMID:24268660
MultiFacTV: module detection from higher-order time series biological data. PMID:24268038
An efficient method for mining cross-timepoint gene regulation sequential patterns from time course gene expression datasets. PMID:24267918
Common mechanisms underlying refractive error identified in functional analysis of gene lists from genome-wide association study results in 2 European British cohorts. PMID:24264139
Decoding a signature-based model of transcription cofactor recruitment dictated by cardinal cis-regulatory elements in proximal promoter regions. PMID:24244184
Molecular sub-group-specific immunophenotypic changes are associated with outcome in recurrent posterior fossa ependymoma. PMID:24240813
Machine-based morphologic analysis of glioblastoma using whole-slide pathology images uncovers clinically relevant molecular correlates. PMID:24236209
Stress susceptibility-specific phenotype associated with different hippocampal transcriptomic responses to chronic tricyclic antidepressant treatment in mice. PMID:24225037
Cisplatin associated with LY294002 increases cytotoxicity and induces changes in transcript profiles of glioblastoma cells. PMID:24218165
MicroRNA expression signature for Satb2-induced osteogenic differentiation in bone marrow stromal cells. PMID:24218084
Metabolomic Dynamic Analysis of Hypoxia in MDA-MB-231 and the Comparison with Inferred Metabolites from Transcriptomics Data. PMID:24216987
The human placental sexome differs between trophoblast epithelium and villous vessel endothelium. PMID:24205377
Proteomic changes during B cell maturation: 2D-DIGE approach. PMID:24205016
Extension of life span by impaired glucose metabolism in Caenorhabditis elegans is accompanied by structural rearrangements of the transcriptomic network. PMID:24204961
Genome-wide promoter methylome of small renal masses. PMID:24204800
Gene expression of sternohyoid and diaphragm muscles in type 2 diabetic rats. PMID:24199937
Identification of differentially coexpressed genes in gonadotrope tumors and normal pituitary using bioinformatics methods. PMID:24198235
Metabolite and transcriptome analysis during fasting suggest a role for the p53-Ddit4 axis in major metabolic tissues. PMID:24191950
25-Hydroxycholesterol activates the integrated stress response to reprogram transcription and translation in macrophages. PMID:24189069
Stress-induced changes in gene interactions in human cells. PMID:24170811
Gene expression profiling by mRNA sequencing reveals increased expression of immune/inflammation-related genes in the hippocampus of individuals with schizophrenia. PMID:24169640
Elucidating novel hepatitis C virus-host interactions using combined mass spectrometry and functional genomics approaches. PMID:24169621
Significant modulation of the hepatic proteome induced by exposure to low temperature in Xenopus laevis. PMID:24167716
Comparing the gene expression profile of stromal cells from human cord blood and bone marrow: lack of the typical "bone" signature in cord blood cells. PMID:24163699
Characterization of cell lines derived from breast cancers and normal mammary tissues for the study of the intrinsic molecular subtypes. PMID:24162158
Efficient sequential and parallel algorithms for record linkage. PMID:24154837
Differential L1 regulation in pluripotent stem cells of humans and apes. PMID:24153179
SHANK3 overexpression causes manic-like behaviour with unique pharmacogenetic properties. PMID:24153177
A component of the mir-17-92 polycistronic oncomir promotes oncogene-dependent apoptosis. PMID:24137534
Gene signatures related to B-cell proliferation predict influenza vaccine-induced antibody response. PMID:24136404
Genome-wide methylation profiling of ADPKD identified epigenetically regulated genes associated with renal cyst development. PMID:24129831
Significant overexpression of DVL1 in Taiwanese colorectal cancer patients with liver metastasis. PMID:24129181
p21 suppresses inflammation and tumorigenesis on pRB-deficient stratified epithelia. PMID:24121270
Comparison of cellular and transcriptional responses to 1,25-dihydroxyvitamin d3 and glucocorticoids in peripheral blood mononuclear cells. PMID:24116131
Identification of cell cycle-regulated genes periodically expressed in U2OS cells and their regulation by FOXM1 and E2F transcription factors. PMID:24109597
CDKN2B expression in adipose tissue of familial combined hyperlipidemia patients. PMID:24103848
Extended self-renewal and accelerated reprogramming in the absence of Kdm5b. PMID:24100015
Collaborative regulation of development but independent control of metabolism by two epidermis-specific transcription factors in Caenorhabditis elegans. PMID:24097988
The molecular diversity of Luminal A breast tumors. PMID:24096568
AQP9 expression in glioblastoma multiforme tumors is limited to a small population of astrocytic cells and CD15(+)/CalB(+) leukocytes. PMID:24086629
Transgenic 6F tomatoes act on the small intestine to prevent systemic inflammation and dyslipidemia caused by Western diet and intestinally derived lysophosphatidic acid. PMID:24085744
Intronic non-CG DNA hydroxymethylation and alternative mRNA splicing in honey bees. PMID:24079845
Metastasis tumor-associated protein 2 enhances metastatic behavior and is associated with poor outcomes in estrogen receptor-negative breast cancer. PMID:24077732
Network-based inference framework for identifying cancer genes from gene expression data. PMID:24073403
The genome-wide early temporal response of Saccharomyces cerevisiae to oxidative stress induced by cumene hydroperoxide. PMID:24073228
Transcriptional profiling of human monocytes identifies the inhibitory receptor CD300a as regulator of transendothelial migration. PMID:24058511
Dynamics of the Saccharomyces cerevisiae transcriptome during bread dough fermentation. PMID:24056467
Acute prenatal exposure to a moderate dose of valproic acid increases social behavior and alters gene expression in rats. PMID:24055786
Genetic mapping with multiple levels of phenotypic information reveals determinants of lymphocyte glucocorticoid sensitivity. PMID:24055111
Serum-free culture success of glial tumors is related to specific molecular profiles and expression of extracellular matrix-associated gene modules. PMID:24046260
Visual search of neuropil-enriched RNAs from brain in situ hybridization data through the image analysis pipeline hippo-ATESC. PMID:24040258
HDAC1 and HDAC2 restrain the intestinal inflammatory response by regulating intestinal epithelial cell differentiation. PMID:24040068
E2F2 and CREB cooperatively regulate transcriptional activity of cell cycle genes. PMID:24038359
PainNetworks: a web-based resource for the visualisation of pain-related genes in the context of their network associations. PMID:24036287
Wood chemistry analysis and expression profiling of a poplar clone expressing a tyrosine-rich peptide. PMID:24013761
A genome-wide analysis of open chromatin in human epididymis epithelial cells reveals candidate regulatory elements for genes coordinating epididymal function. PMID:24006278
Integrated gene network analysis and text mining revealing PIK3R1 regulated by miR-127 in human bladder cancer. PMID:24004856
New levels of transcriptome complexity at upper thermal limits in wild Drosophila revealed by exon expression analysis. PMID:24002645
Reduced insulin/insulin-like growth factor-1 signaling and dietary restriction inhibit translation but preserve muscle mass in Caenorhabditis elegans. PMID:24002365
Sost and its paralog Sostdc1 coordinate digit number in a Gli3-dependent manner. PMID:23994639
Mesenchymal differentiation mediated by NF-κB promotes radiation resistance in glioblastoma. PMID:23993863
Mesenchymal stem cells from human umbilical cord express preferentially secreted factors related to neuroprotection, neurogenesis, and angiogenesis. PMID:23991127
Bovine mammary gene expression profiling during the onset of lactation. PMID:23990904
Proteomic and systems biology analysis of the monocyte response to Coxiella burnetii infection. PMID:23990884
Mechanisms Underlying the Antiproliferative and Prodifferentiative Effects of Psoralen on Adult Neural Stem Cells via DNA Microarray. PMID:23983781
Dissection of the human multipotent adult progenitor cell secretome by proteomic analysis. PMID:23981727
Transcriptional profiling of Neisseria meningitidis interacting with human epithelial cells in a long-term in vitro colonization model. PMID:23980104
Research resource: progesterone receptor targetome underlying mammary gland branching morphogenesis. PMID:23979845
Cytoplasmic polyadenylation is a major mRNA regulator during oogenesis and egg activation in Drosophila. PMID:23978535
Functional genomic analyses of two morphologically distinct classes of Drosophila sensory neurons: post-mitotic roles of transcription factors in dendritic patterning. PMID:23977298
Genome-scale expression and transcription factor binding profiles reveal therapeutic targets in transgenic ERG myeloid leukemia. PMID:23974202
Impact of hospital variables on case mix index as a marker of disease severity. PMID:23965045
Loss of phosphatase and tensin homolog (PTEN) induces leptin-mediated leptin gene expression: feed-forward loop operating in the lung. PMID:23963458
Transcriptional response to stress in the dynamic chromatin environment of cycling and mitotic cells. PMID:23959860
A synthetic TLR3 ligand mitigates profibrotic fibroblast responses by inducing autocrine IFN signaling. PMID:23956427
Analysis of the cartilage proteome from three different mouse models of genetic skeletal diseases reveals common and discrete disease signatures. PMID:23951406
Mitigating effects of L-selenomethionine on low-dose iron ion radiation-induced changes in gene expression associated with cellular stress. PMID:23946774
Genomics of a metamorphic timing QTL: met1 maps to a unique genomic position and regulates morph and species-specific patterns of brain transcription. PMID:23946331
HMGA1 promotes metastatic processes in basal-like breast cancer regulating EMT and stemness. PMID:23945276
Post-transcriptional regulation of myotube elongation and myogenesis by Hoi Polloi. PMID:23942517
PKIS: computational identification of protein kinases for experimentally discovered protein phosphorylation sites. PMID:23941207
Prioritizing disease candidate proteins in cardiomyopathy-specific protein-protein interaction networks based on "guilt by association" analysis. PMID:23940716
Effects of fertility on gene expression and function of the bovine endometrium. PMID:23940519
Oncogenic ETS fusions deregulate E2F3 target genes in Ewing sarcoma and prostate cancer. PMID:23940108
Integrative mechanisms of oriented neuronal migration in the developing brain. PMID:23937349
Biphasic functional regulation in hippocampus of rat with chronic cerebral hypoperfusion induced by permanent occlusion of bilateral common carotid artery. PMID:23936146
Gene Expression Profile of the A549 Human Non-Small Cell Lung Carcinoma Cell Line following Treatment with the Seeds of Descurainia sophia, a Potential Anticancer Drug. PMID:23935669
Systems biology of Ewing sarcoma: a network model of EWS-FLI1 effect on proliferation and apoptosis. PMID:23935076
The Profile of Human Sperm Proteome; A Mini-review. PMID:23926502
FUS-regulated region- and cell-type-specific transcriptome is associated with cell selectivity in ALS/FTLD. PMID:23925123
Partial restoration of macrophage alteration from diet-induced obesity in response to Porphyromonas gingivalis infection. PMID:23922979
Candidate transcriptomic sources of inbreeding depression in Drosophila melanogaster. PMID:23922905
Reverse differentiation as a gene filtering tool in genome expression profiling of adipogenesis for fat marker gene selection and their analysis. PMID:23922792
Transcriptomic analysis of insulin-sensitive tissues from anti-diabetic drug treated ZDF rats, a T2DM animal model. PMID:23922760
Co-culture of human bone marrow stromal cells with endothelial cells alters gene expression profiles. PMID:23918270
Label-free mass spectrometry proteome quantification of human embryonic kidney cells following 24 hours of sialic acid overproduction. PMID:23915316
Bioinformatics and Gene Network Analyses of the Swine Mammary Gland Transcriptome during Late Gestation. PMID:23908586
Early growth response 3 (Egr-3) is induced by transforming growth factor-β and regulates fibrogenic responses. PMID:23906810
Insulin/IGF-1 controls epidermal morphogenesis via regulation of FoxO-mediated p63 inhibition. PMID:23906066
Methylomics of gene expression in human monocytes. PMID:23900078
Microarray characterization of gene expression changes in blood during acute ethanol exposure. PMID:23883607
Integrative genomic analysis of the human immune response to influenza vaccination. PMID:23878721
Brain-derived neurotrophic factor signaling rewrites the glucocorticoid transcriptome via glucocorticoid receptor phosphorylation. PMID:23878391
Sequential waves of gene expression in patients with clinically defined dengue illnesses reveal subtle disease phases and predict disease severity. PMID:23875036
A systems-genetics approach and data mining tool to assist in the discovery of genes underlying complex traits in Oryza sativa. PMID:23874666
Gene set signature of reversal reaction type I in leprosy patients. PMID:23874223
Mining differential top-k co-expression patterns from time course comparative gene expression datasets. PMID:23870110
FGFR2 signaling underlies p63 oncogenic function in squamous cell carcinoma. PMID:23867503
Deep brain stimulation modulates nonsense-mediated RNA decay in Parkinson's patients leukocytes. PMID:23865419
Toxicogenomic evaluation of long-term hepatic effects of TCDD in immature, ovariectomized C57BL/6 mice. PMID:23864506
EVI1 oncoprotein interacts with a large and complex network of proteins and integrates signals through protein phosphorylation. PMID:23858473
A decision theory paradigm for evaluating identifier mapping and filtering methods using data integration. PMID:23855655
The interactomes of influenza virus NS1 and NS2 proteins identify new host factors and provide insights for ADAR1 playing a supportive role in virus replication. PMID:23853584
Exploring signatures of positive selection in pigmentation candidate genes in populations of East Asian ancestry. PMID:23848512
ER stress-mediated apoptosis induced by celastrol in cancer cells and important role of glycogen synthase kinase-3β in the signal network. PMID:23846217
Coexpression analysis of large cancer datasets provides insight into the cellular phenotypes of the tumour microenvironment. PMID:23845084
Non-trisomic homeobox gene expression during craniofacial development in the Ts65Dn mouse model of Down syndrome. PMID:23843306
Male-specific region of the bovine Y chromosome is gene rich with a high transcriptomic activity in testis development. PMID:23842086
Gene expression profiles of metabolic aggressiveness and tumor recurrence in benign meningioma. PMID:23840654
Infection with a Virulent Strain of Wolbachia Disrupts Genome Wide-Patterns of Cytosine Methylation in the Mosquito Aedes aegypti. PMID:23840485
Validation of microarray data in human lymphoblasts shows a role of the ubiquitin-proteasome system and NF-kB in the pathogenesis of Down syndrome. PMID:23830204
Transcriptome analysis of porcine M. semimembranosus divergent in intramuscular fat as a consequence of dietary protein restriction. PMID:23829541
Multifunctional double-negative T cells in sooty mangabeys mediate T-helper functions irrespective of SIV infection. PMID:23825945
Integrative analysis of congenital muscular torticollis: from gene expression to clinical significance. PMID:23819832
Smchd1 regulates a subset of autosomal genes subject to monoallelic expression in addition to being critical for X inactivation. PMID:23819640
Nuclear entrapment and extracellular depletion of PCOLCE is associated with muscle degeneration in oculopharyngeal muscular dystrophy. PMID:23815790
Global gene expression analysis of term amniotic fluid cell-free fetal RNA. PMID:23812459
Comparative Transcriptome Analysis of Adipose Tissues Reveals that ECM-Receptor Interaction Is Involved in the Depot-Specific Adipogenesis in Cattle. PMID:23805208
Progressive morphological changes and impaired retinal function associated with temporal regulation of gene expression after retinal ischemia/reperfusion injury in mice. PMID:23800383
HeLa cell response proteome alterations induced by mammalian reovirus T3D infection. PMID:23799967
STAT3 promotes motor neuron differentiation by collaborating with motor neuron-specific LIM complex. PMID:23798382
Analysis of disease-associated objects at the Rat Genome Database. PMID:23794737
LGR5 is a proneural factor and is regulated by OLIG2 in glioma stem-like cells. PMID:23793848
Family-wide investigation of PDZ domain-mediated protein-protein interactions implicates β-catenin in maintaining the integrity of tight junctions. PMID:23790492
Whole-genome sequencing identifies recurrent mutations in hepatocellular carcinoma. PMID:23788652
Impaired transcriptional response of the murine heart to cigarette smoke in the setting of high fat diet and obesity. PMID:23786483
Prediabetic changes in gene expression induced by aspartame and monosodium glutamate in Trans fat-fed C57Bl/6 J mice. PMID:23783067
Microarray gene expression profiling of neural tissues in bovine spastic paresis. PMID:23782433
Activin A suppresses osteoblast mineralization capacity by altering extracellular matrix (ECM) composition and impairing matrix vesicle (MV) production. PMID:23781072
Assessment of gene expression in peripheral blood using RNAseq before and after weight restoration in anorexia nervosa. PMID:23778302
Genome-wide expression profiling and functional characterization of SCA28 lymphoblastoid cell lines reveal impairment in cell growth and activation of apoptotic pathways. PMID:23777634
Distinct microRNAs expression profile in primary biliary cirrhosis and evaluation of miR 505-3p and miR197-3p as novel biomarkers. PMID:23776611
CDK-mediated activation of the SCF(FBXO) (28) ubiquitin ligase promotes MYC-driven transcription and tumourigenesis and predicts poor survival in breast cancer. PMID:23776131
Integrative genomics of gene and metabolic regulation by estrogen receptors α and β, and their coregulators. PMID:23774759
A genome-wide screen of CREB occupancy identifies the RhoA inhibitors Par6C and Rnd3 as regulators of BDNF-induced synaptogenesis. PMID:23762244
Detection of selective sweeps in cattle using genome-wide SNP data. PMID:23758707
Influence of a short-term iron-deficient diet on hepatic gene expression profiles in rats. PMID:23755274
Expression differences between African American and Caucasian prostate cancer tissue reveals that stroma is the site of aggressive changes. PMID:23754304
Tissue inhibitor of metalloproteinases-3 moderates the proinflammatory status of macrophages. PMID:23742180
Maximizing capture of gene co-expression relationships through pre-clustering of input expression samples: an Arabidopsis case study. PMID:23738693
Glucocorticoid-dependent hippocampal transcriptome in male rats: pathway-specific alterations with aging. PMID:23736296
Network-based multiple sclerosis pathway analysis with GWAS data from 15,000 cases and 30,000 controls. PMID:23731539
Microarray analysis of microRNA expression in peripheral blood mononuclear cells of critically ill patients with influenza A (H1N1). PMID:23731466
Global gene expression profiling of individual human oocytes and embryos demonstrates heterogeneity in early development. PMID:23717564
Transcriptome profiling of mice testes following low dose irradiation. PMID:23714422
Dual Pten/Tp53 suppression promotes sarcoma progression by activating Notch signaling. PMID:23708211
An aberrant transcription factor network essential for Wnt signaling and stem cell maintenance in glioblastoma. PMID:23707066
Transcriptional profiling of swine lung tissue after experimental infection with Actinobacillus pleuropneumoniae. PMID:23698783
Random forest fishing: a novel approach to identifying organic group of risk factors in genome-wide association studies. PMID:23695277
A systems biology-based investigation into the pharmacological mechanisms of wu tou tang acting on rheumatoid arthritis by integrating network analysis. PMID:23690848
Expression and functional pathway analysis of nuclear receptor NR2F2 in ovarian cancer. PMID:23690307
Prediction of clustered RNA-binding protein motif sites in the mammalian genome. PMID:23685613
Molecular signatures in skin associated with clinical improvement during mycophenolate treatment in systemic sclerosis. PMID:23677167
The WASH complex, an endosomal Arp2/3 activator, interacts with the Hermansky-Pudlak syndrome complex BLOC-1 and its cargo phosphatidylinositol-4-kinase type IIα. PMID:23676666
Reduce manual curation by combining gene predictions from multiple annotation engines, a case study of start codon prediction. PMID:23675487
Identification of circulating microRNAs in HNF1A-MODY carriers. PMID:23674172
Draft genome sequence of the Tibetan antelope. PMID:23673643
Differential distribution of the Ca (2+) regulator Pcp4 in the branchial arches is regulated by Hoxa2. PMID:23671666
A multi-platform draft de novo genome assembly and comparative analysis for the Scarlet Macaw (Ara macao). PMID:23667475
Graphite Web: Web tool for gene set analysis exploiting pathway topology. PMID:23666626
A bi-Poisson model for clustering gene expression profiles by RNA-seq. PMID:23665510
Genome-wide association study of antibody response to Newcastle disease virus in chicken. PMID:23663563
Proteomic characterization of inbreeding-related cold sensitivity in Drosophila melanogaster. PMID:23658762
Age-specific signatures of glioblastoma at the genomic, genetic, and epigenetic levels. PMID:23658659
Rat retinal transcriptome: effects of aging and AMD-like retinopathy. PMID:23656783
Genetic variability in the rat Aplec C-type lectin gene cluster regulates lymphocyte trafficking and motor neuron survival after traumatic nerve root injury. PMID:23656637
NF-E2 p45 is important for establishing normal function of platelets. PMID:23648484
Textrous!: extracting semantic textual meaning from gene sets. PMID:23646135
RNA profiles of porcine embryos during genome activation reveal complex metabolic switch sensitive to in vitro conditions. PMID:23637850
miRNA biogenesis enzyme Drosha is required for vascular smooth muscle cell survival. PMID:23637774
Alterations in gene expression in Caenorhabditis elegans associated with organophosphate pesticide intoxication and recovery. PMID:23631360
Lipids as tumoricidal components of human α-lactalbumin made lethal to tumor cells (HAMLET): unique and shared effects on signaling and death. PMID:23629662
Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding. PMID:23622248
Genome-wide analysis reveals downregulation of miR-379/miR-656 cluster in human cancers. PMID:23618224
DNA methylation and transcriptional noise. PMID:23618007
Genome-wide association study of sleep in Drosophila melanogaster. PMID:23617951
Genome-wide analysis of immune system genes by expressed sequence Tag profiling. PMID:23616578
A high-content, high-throughput siRNA screen identifies cyclin D2 as a potent regulator of muscle progenitor cell fusion and a target to enhance muscle regeneration. PMID:23612904
Divergent protein motifs direct elongation factor P-mediated translational regulation in Salmonella enterica and Escherichia coli. PMID:23611909
Regulation of IRS1/Akt insulin signaling by microRNA-128a during myogenesis. PMID:23606743
TFEB controls cellular lipid metabolism through a starvation-induced autoregulatory loop. PMID:23604321
The histone H3.3K27M mutation in pediatric glioma reprograms H3K27 methylation and gene expression. PMID:23603901
Striatal molecular signature of subchronic subthalamic nucleus high frequency stimulation in parkinsonian rat. PMID:23593219
Discovery of cellular proteins required for the early steps of HCV infection using integrative genomics. PMID:23593195
Focused examination of the intestinal epithelium reveals transcriptional signatures consistent with disturbances in enterocyte maturation and differentiation during the course of SIV infection. PMID:23593167
A strategy to capture and characterize the synaptic transcriptome. PMID:23589870
Peeling back the evolutionary layers of molecular mechanisms responsive to exercise-stress in the skeletal muscle of the racing horse. PMID:23580538
A randomised controlled phase II trial of pre-operative celecoxib treatment reveals anti-tumour transcriptional response in primary breast cancer. PMID:23566419
The Escherichia coli Cpx envelope stress response regulates genes of diverse function that impact antibiotic resistance and membrane integrity. PMID:23564175
Spatial transcriptional profile of the chick and mouse endocardial cushions identify novel regulators of endocardial EMT in vitro. PMID:23557753
Endometrial receptivity: a revisit to functional genomics studies on human endometrium and creation of HGEx-ERdb. PMID:23555582
The conserved SKN-1/Nrf2 stress response pathway regulates synaptic function in Caenorhabditis elegans. PMID:23555279
The N and C termini of ZO-1 are surrounded by distinct proteins and functional protein networks. PMID:23553632
Overexpressing the CCL2 chemokine in an epithelial ovarian cancer cell line results in latency of in vivo tumourigenicity. PMID:23552840
Extensive circadian and light regulation of the transcriptome in the malaria mosquito Anopheles gambiae. PMID:23552056
Transcriptome Profiling Following Neuronal and Glial Expression of ALS-Linked SOD1 in Drosophila. PMID:23550139
SH3 interactome conserves general function over specific form. PMID:23549480
Accelerated gene evolution through replication-transcription conflicts. PMID:23538833
Changes in transcriptome of native nasal epithelium expressing F508del-CFTR and intersecting data from comparable studies. PMID:23537407
Comparative GO: a web application for comparative gene ontology and gene ontology-based gene selection in bacteria. PMID:23536820
Th-MYCN mice with caspase-8 deficiency develop advanced neuroblastoma with bone marrow metastasis. PMID:23536557
The α crystallin domain of small heat shock protein b8 (Hspb8) acts as survival and differentiation factor in adult hippocampal neurogenesis. PMID:23536091
RNA sequencing reveals sexually dimorphic gene expression before gonadal differentiation in chicken and allows comprehensive annotation of the W-chromosome. PMID:23531366
Pharmacogenomic predictors of citalopram treatment outcome in major depressive disorder. PMID:23530732
Differential network analysis in human cancer research. PMID:23530503
The neuron-specific chromatin regulatory subunit BAF53b is necessary for synaptic plasticity and memory. PMID:23525042
The TGR5 gene is expressed in human subcutaneous adipose tissue and is associated with obesity, weight loss and resting metabolic rate. PMID:23523790
Identifying natural substrates for dipeptidyl peptidases 8 and 9 using terminal amine isotopic labeling of substrates (TAILS) reveals in vivo roles in cellular homeostasis and energy metabolism. PMID:23519473
Muscle ring finger 1 and muscle ring finger 2 are necessary but functionally redundant during developmental cardiac growth and regulate E2F1-mediated gene expression in vivo. PMID:23512667
PQBP1, a factor linked to intellectual disability, affects alternative splicing associated with neurite outgrowth. PMID:23512658
Dynamic regulation of epigenomic landscapes during hematopoiesis. PMID:23510235
Embryonic mammary signature subsets are activated in Brca1-/- and basal-like breast cancers. PMID:23506684
Transcriptome analysis of proximal tubular cells (HK-2) exposed to urines of type 1 diabetes patients at risk of early progressive renal function decline. PMID:23505438
Cumulus and granulosa cell markers of oocyte and embryo quality. PMID:23498999
Neurodevelopmental alcohol exposure elicits long-term changes to gene expression that alter distinct molecular pathways dependent on timing of exposure. PMID:23497526
Empirical Bayes estimation of posterior probabilities of enrichment: a comparative study of five estimators of the local false discovery rate. PMID:23497228
The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels. PMID:23496936
Sequential binary gene ratio tests define a novel molecular diagnostic strategy for malignant pleural mesothelioma. PMID:23493352
Maximal information component analysis: a novel non-linear network analysis method. PMID:23487572
Genomic analysis of the ecdysone steroid signal at metamorphosis onset using ecdysoneless and EcRnullDrosophila melanogaster mutants. PMID:23482860
Coordinate changes in histone modifications, mRNA levels, and metabolite profiles in clonal INS-1 832/13 β-cells accompany functional adaptations to lipotoxicity. PMID:23476019
Analysis of endoscopic pancreatic function test (ePFT)-collected pancreatic fluid proteins precipitated via ultracentrifugation. PMID:23474565
A dynamic bronchial airway gene expression signature of chronic obstructive pulmonary disease and lung function impairment. PMID:23471465
Tracking recent adaptive evolution in microbial species using TimeZone. PMID:23471110
Gene expression profile analysis of type 2 diabetic mouse liver. PMID:23469233
Cell-type-specific predictive network yields novel insights into mouse embryonic stem cell self-renewal and cell fate. PMID:23468881
Hepatocyte nuclear factor 4 alpha and farnesoid X receptor co-regulates gene transcription in mouse livers on a genome-wide scale. PMID:23462932
Differential effects of drug interventions and dietary lifestyle in developing type 2 diabetes and complications: a systems biology analysis in LDLr-/- mice. PMID:23457508
Autophagy and cellular senescence mediated by Sox2 suppress malignancy of cancer cells. PMID:23451179
DNA methylation dynamics in blood after hematopoietic cell transplant. PMID:23451113
HDAC inhibitors induce tumor-cell-selective pro-apoptotic transcriptional responses. PMID:23449455
Enriching the gene set analysis of genome-wide data by incorporating directionality of gene expression and combining statistical hypotheses and methods. PMID:23444143
Neuron-Enriched Gene Expression Patterns are Regionally Anti-Correlated with Oligodendrocyte-Enriched Patterns in the Adult Mouse and Human Brain. PMID:23440889
Gene Expression Profiling Reveals Regulation of ERK Phosphorylation by Androgen-Induced Tumor Suppressor U19/EAF2 in the Mouse Prostate. PMID:23440596
Translational profiling of hypocretin neurons identifies candidate molecules for sleep regulation. PMID:23431030
Characterization of the rat developmental liver transcriptome. PMID:23429212
Depletion of FOXP3+ regulatory T cells promotes hypercholesterolemia and atherosclerosis. PMID:23426179
Transcriptomic profiling of human peritumoral neocortex tissues revealed genes possibly involved in tumor-induced epilepsy. PMID:23418513
Concise review: new paradigms for Down syndrome research using induced pluripotent stem cells: tackling complex human genetic disease. PMID:23413375
The disruption of Celf6, a gene identified by translational profiling of serotonergic neurons, results in autism-related behaviors. PMID:23407934
N-glycoproteome of E14.Tg2a mouse embryonic stem cells. PMID:23405203
Molecular characterization of basal-like and non-basal-like triple-negative breast cancer. PMID:23404817
CD8(+) lymphocytes suppress human immunodeficiency virus 1 replication by secreting type I interferons. PMID:23402527
Identification of human plasma proteins associated with the cell wall of the pathogenic fungus Paracoccidioides brasiliensis. PMID:23398536
Highly conserved elements discovered in vertebrates are present in non-syntenic loci of tunicates, act as enhancers and can be transcribed during development. PMID:23393190
Profiling and metaanalysis of epidermal keratinocytes responses to epidermal growth factor. PMID:23391100
Characterization of transcriptional changes in ERG rearrangement-positive prostate cancer identifies the regulation of metabolic sensors such as neuropeptide Y. PMID:23390522
Next-generation sequencing of small RNAs from HIV-infected cells identifies phased microrna expression patterns and candidate novel microRNAs differentially expressed upon infection. PMID:23386435
Network-based analysis of multivariate gene expression data. PMID:23385535
Differences in X-chromosome transcriptional activity and cholesterol metabolism between placentae from swine breeds from Asian and Western origins. PMID:23383161
Copy number variations in alternative splicing gene networks impact lifespan. PMID:23382853
Pediatric rhabdoid tumors of kidney and brain show many differences in gene expression but share dysregulation of cell cycle and epigenetic effector genes. PMID:23382118
Proline: the distribution, frequency, positioning, and common functional roles of proline and polyproline sequences in the human proteome. PMID:23372670
Genome-wide prediction and analysis of human tissue-selective genes using microarray expression data. PMID:23369200
Release of severe acute respiratory syndrome coronavirus nuclear import block enhances host transcription in human lung cells. PMID:23365422
NOVA-dependent regulation of cryptic NMD exons controls synaptic protein levels after seizure. PMID:23359859
MeCP2 modulates gene expression pathways in astrocytes. PMID:23351786
Gene Expression Profile Changes After Short-activating RNA-mediated Induction of Endogenous Pluripotency Factors in Human Mesenchymal Stem Cells. PMID:23344177
Evolutionary conservation of the polyproline II conformation surrounding intrinsically disordered phosphorylation sites. PMID:23341186
An analysis and validation pipeline for large-scale RNAi-based screens. PMID:23326633
Integrative proteomic and transcriptomic analyses reveal multiple post-transcriptional regulatory mechanisms of mouse spermatogenesis. PMID:23325766
Escherichia coli- and Staphylococcus aureus-induced mastitis differentially modulate transcriptional responses in neighbouring uninfected bovine mammary gland quarters. PMID:23324411
Adaptive changes in the neuronal proteome: mitochondrial energy production, endoplasmic reticulum stress, and ribosomal dysfunction in the cellular response to metabolic stress. PMID:23321784
Influenza-induced inflammation drives pneumococcal otitis media. PMID:23319557
Systems-level analysis of genome-wide association data. PMID:23316444
Pathogen induced changes in the protein profile of human tears from Fusarium keratitis patients. PMID:23308132
A Myc-microRNA network promotes exit from quiescence by suppressing the interferon response and cell-cycle arrest genes. PMID:23303785
Anticancer agent shikonin is an incompetent inducer of cancer drug resistance. PMID:23300986
Germinal centre protein HGAL promotes lymphoid hyperplasia and amyloidosis via BCR-mediated Syk activation. PMID:23299888
Effects on gene expression in rat liver after administration of RXR agonists: UAB30, 4-methyl-UAB30, and Targretin (Bexarotene). PMID:23292798
Analysis of gene expression profiling in meningioma: deregulated signaling pathways associated with meningioma and EGFL6 overexpression in benign meningioma tissue and serum. PMID:23285163
Functional comparison of chronological and in vitro aging: differential role of the cytoskeleton and mitochondria in mesenchymal stromal cells. PMID:23285157
Pathway correlation profile of gene-gene co-expression for identifying pathway perturbation. PMID:23284898
Micro-scale genomic DNA copy number aberrations as another means of mutagenesis in breast cancer. PMID:23284754
Changes in eutopic endometrial gene expression during the progression of experimental endometriosis in the baboon, Papio anubis. PMID:23284138
Basal splicing factors regulate the stability of mature mRNAs in trypanosomes. PMID:23283975
Cliques for the identification of gene signatures for colorectal cancer across population. PMID:23282040
Computational gene network analysis reveals TNF-induced angiogenesis. PMID:23281897
Different patterns of Epstein-Barr virus latency in endemic Burkitt lymphoma (BL) lead to distinct variants within the BL-associated gene expression signature. PMID:23269792
Comparison of whole-genome DNA methylation patterns in whole blood, saliva, and lymphoblastoid cell lines. PMID:23269419
Gene-expression signatures differ between different clinical forms of familial hemophagocytic lymphohistiocytosis. PMID:23264592
Matrix metalloproteinase-7 coordinates airway epithelial injury response and differentiation of ciliated cells. PMID:23258229
Ontogeny of erythroid gene expression. PMID:23243273
Structural, genetic, and functional signatures of disordered neuro-immunological development in autism spectrum disorder. PMID:23239965
The trithorax group protein Ash2l is essential for pluripotency and maintaining open chromatin in embryonic stem cells. PMID:23239880
Comparison of TCDD-elicited genome-wide hepatic gene expression in Sprague-Dawley rats and C57BL/6 mice. PMID:23238561
Ablation of the cardiac-specific gene leucine-rich repeat containing 10 (Lrrc10) results in dilated cardiomyopathy. PMID:23236519
Architecture for interoperable software in biology. PMID:23235920
Cortical Auditory Deafferentation Induces Long-Term Plasticity in the Inferior Colliculus of Adult Rats: Microarray and qPCR Analysis. PMID:23233834
Characteristics and predictive value of blood transcriptome signature in males with autism spectrum disorders. PMID:23227143
FoxO6 regulates memory consolidation and synaptic function. PMID:23222102
Identifying grade/stage-related active modules in human co-regulatory networks: a case study for breast cancer. PMID:23215806
Centrosome loss or amplification does not dramatically perturb global gene expression in Drosophila. PMID:23213376
MicroRNA 218 acts as a tumor suppressor by targeting multiple cancer phenotype-associated genes in medulloblastoma. PMID:23212916
Transcriptional profiling of the bladder in urogenital schistosomiasis reveals pathways of inflammatory fibrosis and urothelial compromise. PMID:23209855
The molecular profiles of neural stem cell niche in the adult subventricular zone. PMID:23209762
Nuclear RNA sequencing of the mouse erythroid cell transcriptome. PMID:23209567
Comparative proteomic analysis of the ATP-sensitive K+ channel complex in different tissue types. PMID:23197389
RNA targets and specificity of Staufen, a double-stranded RNA-binding protein in Caenorhabditis elegans. PMID:23195953
Application of an integrative computational framework in trancriptomic data of atherosclerotic mice suggests numerous molecular players. PMID:23193398
The histone H3K27 methylation mark regulates intestinal epithelial cell density-dependent proliferation and the inflammatory response. PMID:23192652
Transcriptome analysis in patients with progressive coronary artery disease: identification of differential gene expression in peripheral blood. PMID:23188564
Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2. PMID:23185045
Reverse engineering a mouse embryonic stem cell-specific transcriptional network reveals a new modulator of neuronal differentiation. PMID:23180766
Noncanonical microRNAs and endogenous siRNAs in normal and psoriatic human skin. PMID:23175445
An antibody microarray analysis of serum cytokines in neurodegenerative Parkinsonian syndromes. PMID:23173604
Building a statistical model for predicting cancer genes. PMID:23166609
Proteomics-based methods for discovery, quantification, and validation of protein-protein interactions. PMID:23157382
Proteomic snapshot of breast cancer cell cycle: G1/S transition point. PMID:23152136
The impact of cell source, culture methodology, culture location, and individual donors on gene expression profiles of bone marrow-derived and adipose-derived stromal cells. PMID:23145933
A novel tumor suppressor network in squamous malignancies. PMID:23145321
Novel SNP Discovery in African Buffalo, Syncerus caffer, using high-throughput Sequencing. PMID:23144973
DNA hypomethylation affects cancer-related biological functions and genes relevant in neuroblastoma pathogenesis. PMID:23144874
Integrative analysis reveals relationships of genetic and epigenetic alterations in osteosarcoma. PMID:23144859
Elongation factor 1 alpha1 and genes associated with Usher syndromes are downstream targets of GBX2. PMID:23144817
Prediction of C. elegans longevity genes by human and worm longevity networks. PMID:23144747
Unravelling the enigma of selective vulnerability in neurodegeneration: motor neurons resistant to degeneration in ALS show distinct gene expression characteristics and decreased susceptibility to excitotoxicity. PMID:23143228
iBAG: integrative Bayesian analysis of high-dimensional multiplatform genomics data. PMID:23142963
Genome-wide scan for bats and dolphin to detect their genetic basis for new locomotive styles. PMID:23139738
Novel loci associated with PR interval in a genome-wide association study of 10 African American cohorts. PMID:23139255
miR-10b*, a master inhibitor of the cell cycle, is down-regulated in human breast tumours. PMID:23125021
Systems-level approaches reveal conservation of trans-regulated genes in the rat and genetic determinants of blood pressure in humans. PMID:23118132
An EST dataset for Metasequoia glyptostroboides buds: the first EST resource for molecular genomics studies in Metasequoia. PMID:23117391
mRNA expression in papillary and anaplastic thyroid carcinoma: molecular anatomy of a killing switch. PMID:23115614
Noncanonical microRNAs and endogenous siRNAs in lytic infection of murine gammaherpesvirus. PMID:23110115
Genomic basis of aging and life-history evolution in Drosophila melanogaster. PMID:23106705
Identification of estrogen responsive genes using esophageal squamous cell carcinoma (ESCC) as a model. PMID:23101584
Differential Ly-6C expression identifies the recruited macrophage phenotype, which orchestrates the regression of murine liver fibrosis. PMID:23100531
CLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex. PMID:23085716
Transcriptional responses to loss of RNase H2 in Saccharomyces cerevisiae. PMID:23079308
Fluoxetine prevents development of an early stress-related molecular signature in the rat infralimbic medial prefrontal cortex. Implications for depression? PMID:23075086
A novel regulatory factor recruits the nucleosome remodeling complex to wingless integrated (Wnt) signaling gene promoters in mouse embryonic stem cells. PMID:23074223
Effects of immunostimulation on social behavior, chemical communication and genome-wide gene expression in honey bee workers (Apis mellifera). PMID:23072398
Glycoproteomics enabled by tagging sialic acid- or galactose-terminated glycans. PMID:23070960
The limitations of simple gene set enrichment analysis assuming gene independence. PMID:23070592
Transcriptomic analysis of postmortem brain identifies dysregulated splicing events in novel candidate genes for schizophrenia. PMID:23062752
Transient scrotal hyperthermia induces lipid droplet accumulation and reveals a different ADFP expression pattern between the testes and liver in mice. PMID:23056214
Prioritising risk pathways of complex human diseases based on functional profiling. PMID:23047740
Cholesterol accumulation regulates expression of macrophage proteins implicated in proteolysis and complement activation. PMID:23042816
Alkylation sensitivity screens reveal a conserved cross-species functionome. PMID:23038810
LRpath analysis reveals common pathways dysregulated via DNA methylation across cancer types. PMID:23033966
Differential gene and microRNA expression between etoposide resistant and etoposide sensitive MCF7 breast cancer cell lines. PMID:23028896
Multi-edge gene set networks reveal novel insights into global relationships between biological themes. PMID:23028852
Proteomic and systems biology analysis of monocytes exposed to securinine, a GABA(A) receptor antagonist and immune adjuvant. PMID:23028424
Enhancing the prioritization of disease-causing genes through tissue specific protein interaction networks. PMID:23028288
Non-Biased Enrichment Does Not Improve Quantitative Proteomic Delineation of Reovirus T3D-Infected HeLa Cell Protein Alterations. PMID:23024642
Systems-pharmacology dissection of a drug synergy in imatinib-resistant CML. PMID:23023260
Quantitative biomedical annotation using medical subject heading over-representation profiles (MeSHOPs). PMID:23017167
Plasma proteomics shows an elevation of the anti-inflammatory protein APOA-IV in chronic equine laminitis. PMID:23016951
Factors regulated by interferon gamma and hypoxia-inducible factor 1A contribute to responses that protect mice from Coccidioides immitis infection. PMID:23006927
Early life stage trimethyltin exposure induces ADP-ribosylation factor expression and perturbs the vascular system in zebrafish. PMID:23000284
Transcriptome-wide analysis of exosome targets. PMID:23000172
A noncoding, regulatory mutation implicates HCFC1 in nonsyndromic intellectual disability. PMID:23000143
Three distinct patterns of histone H3Y41 phosphorylation mark active genes. PMID:22999934
Controlled reoxygenation cardiopulmonary bypass is associated with reduced transcriptomic changes in cyanotic tetralogy of Fallot patients undergoing surgery. PMID:22991208
Peripheral blood gene expression as a novel genomic biomarker in complicated sarcoidosis. PMID:22984568
The effect of long term calorie restriction on in vivo hepatic proteostatis: a novel combination of dynamic and quantitative proteomics. PMID:22984287
The cytokines interleukin 27 and interferon-γ promote distinct Treg cell populations required to limit infection-induced pathology. PMID:22981537
Transcriptional signatures as a disease-specific and predictive inflammatory biomarker for type 1 diabetes. PMID:22972474
Hepatic differentiation and maturation of human embryonic stem cells cultured in a perfused three-dimensional bioreactor. PMID:22970843
Diversity and complexity in chromatin recognition by TFII-I transcription factors in pluripotent embryonic stem cells and embryonic tissues. PMID:22970219
AbsIDconvert: an absolute approach for converting genetic identifiers at different granularities. PMID:22967011
ReLiance: a machine learning and literature-based prioritization of receptor--ligand pairings. PMID:22962483
EnrichNet: network-based gene set enrichment analysis. PMID:22962466
Wnt5a potentiates TGF-β signaling to promote colonic crypt regeneration after tissue injury. PMID:22956684
Analysis of the transcriptomes downstream of Eyeless and the Hedgehog, Decapentaplegic and Notch signaling pathways in Drosophila melanogaster. PMID:22952997
Identification of thalidomide-specific transcriptomics and proteomics signatures during differentiation of human embryonic stem cells. PMID:22952932
miRNA regulation of gene expression: a predictive bioinformatics analysis in the postnatally developing monkey hippocampus. PMID:22952683
Alpha 1-antitrypsin reduces inflammation and enhances mouse pancreatic islet transplant survival. PMID:22949661
Effects of heat shock protein 72 (Hsp72) on evolution of astrocyte activation following stroke in the mouse. PMID:22940431
Role of aldo-keto reductases and other doxorubicin pharmacokinetic genes in doxorubicin resistance, DNA binding, and subcellular localization. PMID:22938713
A gene expression signature of emphysema-related lung destruction and its reversal by the tripeptide GHK. PMID:22937864
The B-MYB transcriptional network guides cell cycle progression and fate decisions to sustain self-renewal and the identity of pluripotent stem cells. PMID:22936984
Measuring the maturity of the fast-spiking interneuron transcriptional program in autism, schizophrenia, and bipolar disorder. PMID:22936973
Genomic analysis of sleep deprivation reveals translational regulation in the hippocampus. PMID:22930738
Transcriptional profiling identifies genes induced by hepatocyte-derived extracellular matrix in metastatic human colorectal cancer cell lines. PMID:22930170
RBF binding to both canonical E2F targets and noncanonical targets depends on functional dE2F/dDP complexes. PMID:22927638
Divergent whole-genome methylation maps of human and chimpanzee brains reveal epigenetic basis of human regulatory evolution. PMID:22922032
Prediction of gene network models in limb muscle precursors. PMID:22917675
Blood-based gene expression signatures of infants and toddlers with autism. PMID:22917206
Transcriptional programs controlling perinatal lung maturation. PMID:22916088
Phosphoproteome of human glioblastoma initiating cells reveals novel signaling regulators encoded by the transcriptome. PMID:22912867
Mig-6 plays a critical role in the regulation of cholesterol homeostasis and bile acid synthesis. PMID:22912762
Inhibition of AKT with the orally active allosteric AKT inhibitor, MK-2206, sensitizes endometrial cancer cells to progestin. PMID:22911820
Identification of cell surface targets through meta-analysis of microarray data. PMID:22904683
MicroRNAs miR-30b, miR-30d, and miR-494 regulate human endometrial receptivity. PMID:22902743
Genome-wide distribution of 5-formylcytosine in embryonic stem cells is associated with transcription and depends on thymine DNA glycosylase. PMID:22902005
Network biology of tumor stem-like cells identified a regulatory role of CBX5 in lung cancer. PMID:22900142
Medulla oblongata transcriptome changes during presymptomatic natural scrapie and their association with prion-related lesions. PMID:22897917
Nonpathogenic Lactobacillus rhamnosus activates the inflammasome and antiviral responses in human macrophages. PMID:22895087
Adipose genes down-regulated during experimental endotoxemia are also suppressed in obesity. PMID:22893715
A metabolic prosurvival role for PML in breast cancer. PMID:22886304
Exon level transcriptomic profiling of HIV-1-infected CD4(+) T cells reveals virus-induced genes and host environment favorable for viral replication. PMID:22876188
KAP1 regulates gene networks controlling T-cell development and responsiveness. PMID:22872677
Expression changes in the stroma of prostate cancer predict subsequent relapse. PMID:22870216
Mice lacking the β2 adrenergic receptor have a unique genetic profile before and after focal brain ischaemia. PMID:22867428
Detection of biomarkers for hepatocellular carcinoma using a hybrid univariate gene selection methods. PMID:22867264
Prion protein and Shadoo are involved in overlapping embryonic pathways and trophoblastic development. PMID:22860039
Annexin A2 silencing induces G2 arrest of non-small cell lung cancer cells through p53-dependent and -independent mechanisms. PMID:22859294
A microRNA network regulates expression and biosynthesis of wild-type and DeltaF508 mutant cystic fibrosis transmembrane conductance regulator. PMID:22853952
IKAROS deletions dictate a unique gene expression signature in patients with adult B-cell acute lymphoblastic leukemia. PMID:22848414
Global expression profiling of globose basal cells and neurogenic progression within the olfactory epithelium. PMID:22847514
Rapid turnover of long noncoding RNAs and the evolution of gene expression. PMID:22844254
An integrated regulatory network reveals pervasive cross-regulation among transcription and splicing factors. PMID:22844237
Discovering the hidden sub-network component in a ranked list of genes or proteins derived from genomic experiments. PMID:22844098
Association between SNPs and gene expression in multiple regions of the human brain. PMID:22832957
Genetic regulation of Nrxn1 [corrected] expression: an integrative cross-species analysis of schizophrenia candidate genes. PMID:22832527
Position-dependent FUS-RNA interactions regulate alternative splicing events and transcriptions. PMID:22829983
Cre-mediated stress affects sirtuin expression levels, peroxisome biogenesis and metabolism, antioxidant and proinflammatory signaling pathways. PMID:22829911
A gene expression signature distinguishes normal tissues of sporadic and radiation-induced papillary thyroid carcinomas. PMID:22828612
Burkholderia pseudomallei transcriptional adaptation in macrophages. PMID:22823543
Brain transcriptome variation among behaviorally distinct strains of zebrafish (Danio rerio). PMID:22817472
Genome-wide microarray comparison reveals downstream genes of Pax6 in the developing mouse cerebellum. PMID:22817342
Twist1 transcriptional targets in the developing atrio-ventricular canal of the mouse. PMID:22815831
Beyond comparing means: the usefulness of analyzing interindividual variation in gene expression for identifying genes associated with cancer development. PMID:22809348
Dynamic changes in Ezh2 gene occupancy underlie its involvement in neural stem cell self-renewal and differentiation towards oligodendrocytes. PMID:22808153
Using rule-based machine learning for candidate disease gene prioritization and sample classification of cancer gene expression data. PMID:22808075
Role of MXD3 in proliferation of DAOY human medulloblastoma cells. PMID:22808009
The atypical E2F family member E2F7 couples the p53 and RB pathways during cellular senescence. PMID:22802529
Increased immune gene expression and immune cell infiltration in high-grade astrocytoma distinguish long-term from short-term survivors. PMID:22802421
Temporal profiling and pulsed SILAC labeling identify novel secreted proteins during ex vivo osteoblast differentiation of human stromal stem cells. PMID:22801418
Dysregulation of uterine signaling pathways in progesterone receptor-Cre knockout of dicer. PMID:22798293
Convergent molecular evolution of genomic cores in Salmonella enterica and Escherichia coli. PMID:22797756
An unbiased approach to identify genes involved in development in a turtle with temperature-dependent sex determination. PMID:22793670
Effect of irradiation on cell transcriptome and proteome of rat submandibular salivary glands. PMID:22792391
Stromal galectin-1 expression is associated with long-term survival in resectable pancreatic ductal adenocarcinoma. PMID:22785208
Exploring molecular links between lymph node invasion and cancer prognosis in human breast cancer. PMID:22784575
Abnormal p38α mitogen-activated protein kinase signaling in dilated cardiomyopathy caused by lamin A/C gene mutation. PMID:22773734
CD28 costimulation regulates genome-wide effects on alternative splicing. PMID:22768209
γ-H2AX kinetics as a novel approach to high content screening for small molecule radiosensitizers. PMID:22768044
High-throughput transcriptomic and RNAi analysis identifies AIM1, ERGIC1, TMED3 and TPX2 as potential drug targets in prostate cancer. PMID:22761906
A systematic comparison of genome-scale clustering algorithms. PMID:22759431
Novel neurodevelopmental information revealed in amniotic fluid supernatant transcripts from fetuses with trisomies 18 and 21. PMID:22752091
Distinct and overlapping gene regulatory networks in BMP- and HDAC-controlled cell fate determination in the embryonic forebrain. PMID:22748179
Genomic signatures for predicting survival and adjuvant chemotherapy benefit in patients with non-small-cell lung cancer. PMID:22748043
Efficient algorithms for fast integration on large data sets from multiple sources. PMID:22741525
Live-cell monitoring of periodic gene expression in synchronous human cells identifies Forkhead genes involved in cell cycle control. PMID:22740631
Host response signature to Staphylococcus aureus alpha-hemolysin implicates pulmonary Th17 response. PMID:22733574
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3. PMID:22728672
Integrated analysis of microRNA expression and mRNA transcriptome in lungs of avian influenza virus infected broilers. PMID:22726614
Intra- and inter-individual variance of gene expression in clinical studies. PMID:22723873
SIRT7 links H3K18 deacetylation to maintenance of oncogenic transformation. PMID:22722849
Gene-expression changes caused by inbreeding protect against inbreeding depression in Drosophila. PMID:22714404
Clinical and molecular characteristics of congenital glioblastoma. PMID:22711608
Global Approaches to the Role of miRNAs in Drug-Induced Changes in Gene Expression. PMID:22707957
Pediatric brainstem gangliogliomas show overexpression of neuropeptide prepronociceptin (PNOC) by microarray and immunohistochemistry. PMID:22706982
Comprehensive characterization of mesenchymal stem cells from human placenta and fetal membrane and their response to osteoactivin stimulation. PMID:22701494
Sertoli-cell-specific knockout of connexin 43 leads to multiple alterations in testicular gene expression in prepubertal mice. PMID:22699423
Transcriptome analysis of amoeboid and ramified microglia isolated from the corpus callosum of rat brain. PMID:22697290
Response of primary human airway epithelial cells to influenza infection: a quantitative proteomic study. PMID:22694362
Proteomic analysis of extracellular matrix from the hepatic stellate cell line LX-2 identifies CYR61 and Wnt-5a as novel constituents of fibrotic liver. PMID:22694338
The database of chromosome imbalance regions and genes resided in lung cancer from Asian and Caucasian identified by array-comparative genomic hybridization. PMID:22691236
Probing the Xenopus laevis inner ear transcriptome for biological function. PMID:22676585
High accuracy mutation detection in leukemia on a selected panel of cancer genes. PMID:22675565
An interferon-related signature in the transcriptional core response of human macrophages to Mycobacterium tuberculosis infection. PMID:22675550
Transcriptomic characterization of temperature stress responses in larval zebrafish. PMID:22666345
mrhl RNA, a long noncoding RNA, negatively regulates Wnt signaling through its protein partner Ddx5/p68 in mouse spermatogonial cells. PMID:22665494
Oligonucleotide microarray analysis of dietary-induced hyperlipidemia gene expression profiles in miniature pigs. PMID:22662175
Circadian rhythm-dependent alterations of gene expression in Drosophila brain lacking fragile X mental retardation protein. PMID:22655085
Down-regulation of NF-κB transcriptional activity in HIV-associated kidney disease by BRD4 inhibition. PMID:22645123
NF-κB2 mutation targets survival, proliferation and differentiation pathways in the pathogenesis of plasma cell tumors. PMID:22642622
PDX1 regulation of FABP1 and novel target genes in human intestinal epithelial Caco-2 cells. PMID:22640736
Expression profiling reveals novel hypoxic biomarkers in peripheral blood of adult mice exposed to chronic hypoxia. PMID:22629407
Systems biology approach to identify gene network signatures for colorectal cancer. PMID:22629282
Silencing of enzymes involved in ceramide biosynthesis causes distinct global alterations of lipid homeostasis and gene expression. PMID:22628619
Involvement of microRNA lethal-7a in the regulation of embryo implantation in mice. PMID:22623977
Inhibition of serine palmitoyltransferase delays the onset of radiation-induced pulmonary fibrosis through the negative regulation of sphingosine kinase-1 expression. PMID:22615416
H3K4 demethylation by Jarid1a and Jarid1b contributes to retinoblastoma-mediated gene silencing during cellular senescence. PMID:22615382
Coordinated dysregulation of mRNAs and microRNAs in the rat medial prefrontal cortex following a history of alcohol dependence. PMID:22614244
The Grainyhead transcription factor Grhl3/Get1 suppresses miR-21 expression and tumorigenesis in skin: modulation of the miR-21 target MSH2 by RNA-binding protein DND1. PMID:22614019
Mapping of lamin A- and progerin-interacting genome regions. PMID:22610065
De-novo transcriptome sequencing of a normalized cDNA pool from influenza infected ferrets. PMID:22606336
Sex-specific modulation of gene expression networks in murine hypothalamus. PMID:22593731
In silico functional profiling of individual prostate cancer tumors: many genes, few functions. PMID:22593245
Tissue-selective regulation of androgen-responsive genes. PMID:22591338
ELK1 uses different DNA binding modes to regulate functionally distinct classes of target genes. PMID:22589737
Cardiopulmonary dysfunction in the Osteogenesis imperfecta mouse model Aga2 and human patients are caused by bone-independent mechanisms. PMID:22589248
Obesity and airway responsiveness: role of TNFR2. PMID:22584291
Identification of novel NRF2-regulated genes by ChIP-Seq: influence on retinoid X receptor alpha. PMID:22581777
Morphine produces immunosuppressive effects in nonhuman primates at the proteomic and cellular levels. PMID:22580588
Discovery of novel glucose-regulated proteins in isolated human pancreatic islets using LC-MS/MS-based proteomics. PMID:22578083
Oncogenic Kras expression in postmitotic neurons leads to S100A8-S100A9 protein overexpression and gliosis. PMID:22577135
Differential modulation of the oligodendrocyte transcriptome by sonic hedgehog and bone morphogenetic protein 4 via opposing effects on histone acetylation. PMID:22573687
Genome-wide analysis of p63 binding sites identifies AP-2 factors as co-regulators of epidermal differentiation. PMID:22573176
Integrated Analysis Reveals hsa-miR-142 as a Representative of a Lymphocyte-Specific Gene Expression and Methylation Signature. PMID:22570537
Quantitative proteomic analysis of mitochondrial proteins reveals prosurvival mechanisms in the perpetuation of radiation-induced genomic instability. PMID:22569412
Augmented annotation and orthologue analysis for Oryctolagus cuniculus: Better Bunny. PMID:22568790
Reproducible isolation of lymph node stromal cells reveals site-dependent differences in fibroblastic reticular cells. PMID:22566825
Transcriptome analysis of a long-lived natural Drosophila variant: a prominent role of stress- and reproduction-genes in lifespan extension. PMID:22559237
Linking proteins to signaling pathways for experiment design and evaluation. PMID:22558382
Exploring the transcriptome of ciliated cells using in silico dissection of human tissues. PMID:22558177
Experimental verification of a predicted intronic microRNA in human NGFR gene with a potential pro-apoptotic function. PMID:22558167
Elephant transcriptome provides insights into the evolution of eutherian placentation. PMID:22546564
DAVID-WS: a stateful web service to facilitate gene/protein list analysis. PMID:22543366
Characterization of the transcriptome profiles related to globin gene switching during in vitro erythroid maturation. PMID:22537182
Single-cell analysis of population context advances RNAi screening at multiple levels. PMID:22531119
Gene expression changes in C57BL/6J and DBA/2J mice following prenatal alcohol exposure. PMID:22530671
A systems biology approach to characterize the regulatory networks leading to trabectedin resistance in an in vitro model of myxoid liposarcoma. PMID:22523595
Focused examination of the intestinal lamina propria yields greater molecular insight into mechanisms underlying SIV induced immune dysfunction. PMID:22511950
An unbiased assessment of the role of imprinted genes in an intergenerational model of developmental programming. PMID:22511876
Human adipose tissue macrophages display activation of cancer-related pathways. PMID:22511784
Gene regulation of intestinal porcine epithelial cells IPEC-J2 is dependent on the site of deoxynivalenol toxicological action. PMID:22506013
Global alteration in gene expression profiles of deciduas from women with idiopathic recurrent pregnancy loss. PMID:22505054
MOfinder: a novel algorithm for detecting overlapping modules from protein-protein interaction network. PMID:22500072
Identification of targets of c-Src tyrosine kinase by chemical complementation and phosphoproteomics. PMID:22499769
A new approach for the joint analysis of multiple ChIP-seq libraries with application to histone modification. PMID:22499701
Genome-wide association analysis for feed efficiency in Angus cattle. PMID:22497295
Systematic identification of spontaneous preterm birth-associated RNA transcripts in maternal plasma. PMID:22496790
Gene expression analysis of Drosophilaa Manf mutants reveals perturbations in membrane traffic and major metabolic changes. PMID:22494833
Genistein cooperates with the histone deacetylase inhibitor vorinostat to induce cell death in prostate cancer cells. PMID:22494660
Systems analysis of inflammatory bowel disease based on comprehensive gene information. PMID:22480395
Autotaxin and its product lysophosphatidic acid suppress brown adipose differentiation and promote diet-induced obesity in mice. PMID:22474126
HDL proteome in hemodialysis patients: a quantitative nanoflow liquid chromatography-tandem mass spectrometry approach. PMID:22470525
Comparison of muscle transcriptome between pigs with divergent meat quality phenotypes identifies genes related to muscle metabolism and structure. PMID:22470472
PTRF/cavin-1 and MIF proteins are identified as non-small cell lung cancer biomarkers by label-free proteomics. PMID:22461895
KAP1 regulates gene networks controlling mouse B-lymphoid cell differentiation and function. PMID:22452978
Transcriptome landscape of the human placenta. PMID:22448651
Advanced bone formation in mice with a dominant-negative mutation in the thyroid hormone receptor β gene due to activation of Wnt/β-catenin protein signaling. PMID:22442145
Early activation of the inflammatory response in the liver of brain-dead non-human primates. PMID:22440934
Downregulation of HuR as a new mechanism of doxorubicin resistance in breast cancer cells. PMID:22436134
Attenuating effect of Fufang Xueshuantong Capsule on kidney function in diabetic nephropathy model. PMID:22434410
Loss of mitochondrial protease OMA1 alters processing of the GTPase OPA1 and causes obesity and defective thermogenesis in mice. PMID:22433842
Genetic toxicology and toxicogenomic analysis of three cigarette smoke condensates in vitro reveals few differences among full-flavor, blonde, and light products. PMID:22431010
Functional roles for redox genes in ethanol sensitivity in Drosophila. PMID:22430022
Ex vivo expansion of cord blood progenitors impairs their short-term and long-term repopulating activity associated with transcriptional dysregulation of signalling networks. PMID:22429797
Cellular phenotype-dependent and -independent effects of vitamin C on the renewal and gene expression of mouse embryonic fibroblasts. PMID:22427916
Knockdown of SF-1 and RNF31 affects components of steroidogenesis, TGFβ, and Wnt/β-catenin signaling in adrenocortical carcinoma cells. PMID:22427816
Cell-surface proteomics identifies lineage-specific markers of embryo-derived stem cells. PMID:22424930
Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb. PMID:22421546
An update on the strategies in multicomponent activity monitoring within the phytopharmaceutical field. PMID:22417247
Clonal architecture of secondary acute myeloid leukemia. PMID:22417201
The human pancreatic islet transcriptome: expression of candidate genes for type 1 diabetes and the impact of pro-inflammatory cytokines. PMID:22412385
Microtubule stability, Golgi organization, and transport flux require dystonin-a2-MAP1B interaction. PMID:22412020
Quantitative proteomic profiling identifies protein correlates to EGFR kinase inhibition. PMID:22411897
Gene expression profiling of peripheral blood mononuclear cells in the setting of peripheral arterial disease. PMID:22409835
Overactivation of hedgehog signaling alters development of the ovarian vasculature in mice. PMID:22402963
Degenerate T-cell recognition of peptides on MHC molecules creates large holes in the T-cell repertoire. PMID:22396638
The MuvB complex sequentially recruits B-Myb and FoxM1 to promote mitotic gene expression. PMID:22391450
Integrative genomic analysis reveals extended germline homozygosity with lung cancer risk in the PLCO cohort. PMID:22384118
A role for nonsense-mediated mRNA decay in plants: pathogen responses are induced in Arabidopsis thaliana NMD mutants. PMID:22384098
3T3 cell lines stably expressing Pax6 or Pax6(5a)--a new tool used for identification of common and isoform specific target genes. PMID:22384097
Functional complexity of the axonal growth cone: a proteomic analysis. PMID:22384089
Penetrance of biallelic SMARCAL1 mutations is associated with environmental and genetic disturbances of gene expression. PMID:22378147
Construction and analysis of the protein-protein interaction networks for schizophrenia, bipolar disorder, and major depression. PMID:22373040
Transcriptomic profiles of peripheral white blood cells in type II diabetes and racial differences in expression profiles. PMID:22369568
Improving ChIP-seq peak-calling for functional co-regulator binding by integrating multiple sources of biological information. PMID:22369349
Protease-associated cellular networks in malaria parasite Plasmodium falciparum. PMID:22369208
A robust tool for discriminative analysis and feature selection in paired samples impacts the identification of the genes essential for reprogramming lung tissue to adenocarcinoma. PMID:22369099
Biologicals and fetal cell therapy for wound and scar management. PMID:22363853
CUGBP1 and MBNL1 preferentially bind to 3' UTRs and facilitate mRNA decay. PMID:22355723
Time-dependent transcriptional profiling links gene expression to mitogen-activated protein kinase kinase 4 (MKK4)-mediated suppression of omental metastatic colonization. PMID:22350525
Mixing of honeybees with different genotypes affects individual worker behavior and transcription of genes in the neuronal substrate. PMID:22348118
The transcriptional response of Caenorhabditis elegans to Ivermectin exposure identifies novel genes involved in the response to reduced food intake. PMID:22348077
Unraveling the global microRNAome responses to ionizing radiation in human embryonic stem cells. PMID:22347422
ANAP: an integrated knowledge base for Arabidopsis protein interaction network analysis. PMID:22345505
TAK1 inhibition promotes apoptosis in KRAS-dependent colon cancers. PMID:22341439
Gene expression profiling of primary male breast cancers reveals two unique subgroups and identifies N-acetyltransferase-1 (NAT1) as a novel prognostic biomarker. PMID:22333393
Direct recruitment of polycomb repressive complex 1 to chromatin by core binding transcription factors. PMID:22325351
RYBP-PRC1 complexes mediate H2A ubiquitylation at polycomb target sites independently of PRC2 and H3K27me3. PMID:22325148
Forkhead box N4 (Foxn4) activates Dll4-Notch signaling to suppress photoreceptor cell fates of early retinal progenitors. PMID:22323600
The gene expression analysis of blood reveals S100A11 and AQP9 as potential biomarkers of infective endocarditis. PMID:22319637
The cortical and striatal gene expression profile of 100 hz electroacupuncture treatment in 6-hydroxydopamine-induced Parkinson's disease model. PMID:22319547
CUX1 transcription factor is required for optimal ATM/ATR-mediated responses to DNA damage. PMID:22319212
Interleukin-1β modulates smooth muscle cell phenotype to a distinct inflammatory state relative to PDGF-DD via NF-κB-dependent mechanisms. PMID:22318995
DNA methylation signatures in development and aging of the human prefrontal cortex. PMID:22305529
Genome-Wide Identification and Quantification of cis- and trans-Regulated Genes Responding to Marek's Disease Virus Infection via Analysis of Allele-Specific Expression. PMID:22303407
Genome-wide identification of palmitate-regulated immediate early genes and target genes in pancreatic beta-cells reveals a central role of NF-κB. PMID:22302392
Conservation and divergence of chemical defense system in the tunicate Oikopleura dioica revealed by genome wide response to two xenobiotics. PMID:22300585
Identification of candidate biomarkers for early detection of human lung squamous cell cancer by quantitative proteomics. PMID:22298307
Genetic mapping of habitual substance use, obesity-related traits, responses to mental and physical stress, and heart rate and blood pressure measurements reveals shared genes that are overrepresented in the neural synapse. PMID:22297481
Genome-wide analysis of hepatic LRH-1 reveals a promoter binding preference and suggests a role in regulating genes of lipid metabolism in concert with FXR. PMID:22296850
A comparative study of gene-expression data of basal cell carcinoma and melanoma reveals new insights about the two cancers. PMID:22295108
Genome-wide landscape of liver X receptor chromatin binding and gene regulation in human macrophages. PMID:22292898
Microarray analysis of HIV resistant female sex workers reveal a gene expression signature pattern reminiscent of a lowered immune activation state. PMID:22291902
DNA methylation and gene expression changes in monozygotic twins discordant for psoriasis: identification of epigenetically dysregulated genes. PMID:22291603
Evolution and function of CAG/polyglutamine repeats in protein-protein interaction networks. PMID:22287626
MicroRNA alterations in Barrett's esophagus, esophageal adenocarcinoma, and esophageal adenocarcinoma cell lines following cranberry extract treatment: Insights for chemoprevention. PMID:22279419
Implications for health and disease in the genetic signature of the Ashkenazi Jewish population. PMID:22277159
Effects of oestrogen on microRNA expression in hormone-responsive breast cancer cells. PMID:22274890
Comparing statistical methods for constructing large scale gene networks. PMID:22272232
Surface functionalities of gold nanoparticles impact embryonic gene expression responses. PMID:22263968
Early alterations of the immune transcriptome in cultured progenitor cells from obese African-American women. PMID:22262158
Suppression of cancer stemness p21-regulating mRNA and microRNA signatures in recurrent ovarian cancer patient samples. PMID:22260314
Proteomic analysis of eccrine sweat: implications for the discovery of schizophrenia biomarker proteins. PMID:22256890
Generation of human vascular smooth muscle subtypes provides insight into embryological origin-dependent disease susceptibility. PMID:22252507
Postmortem cardiac tissue maintains gene expression profile even after late harvesting. PMID:22251372
Interspecies comparison of human and murine scleroderma reveals IL-13 and CCL2 as disease subset-specific targets. PMID:22245215
Proteomic analysis (GeLC-MS/MS) of ePFT-collected pancreatic fluid in chronic pancreatitis. PMID:22243521
Impact of collection and storage of lung tumor tissue on whole genome expression profiling. PMID:22240448
Progesterone inhibits uterine gland development in the neonatal mouse uterus. PMID:22238285
AP-1 transcription factors, mucin-type molecules and MMPs regulate the IL-11 mediated invasiveness of JEG-3 and HTR-8/SVneo trophoblastic cells. PMID:22235337
Protein kinase C (PKC)ζ-mediated Gαq stimulation of ERK5 protein pathway in cardiomyocytes and cardiac fibroblasts. PMID:22232556
RNA profiling and chromatin immunoprecipitation-sequencing reveal that PTF1a stabilizes pancreas progenitor identity via the control of MNX1/HLXB9 and a network of other transcription factors. PMID:22232429
Mass spectrometry-based proteomics: qualitative identification to activity-based protein profiling. PMID:22231900
Sources of variance in baseline gene expression in the rodent liver. PMID:22230429
Comprehensive gene expression profiling in the prefrontal cortex links immune activation and neutrophil infiltration to antinociception. PMID:22219268
Quantifying the white blood cell transcriptome as an accessible window to the multiorgan transcriptome. PMID:22219206
A decade of 3C technologies: insights into nuclear organization. PMID:22215806
Lipid metabolic pathways as lung cancer therapeutic targets: a computational study. PMID:22211244
The renal transcriptome of db/db mice identifies putative urinary biomarker proteins in patients with type 2 diabetes: a pilot study. PMID:22205226
Comparative analysis of nuclear transfer embryo-derived mouse embryonic stem cells. Part II: gene regulation. PMID:22204593
Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells. PMID:22196727
Single cell analysis facilitates staging of Blimp1-dependent primordial germ cells derived from mouse embryonic stem cells. PMID:22194959
GenSensor Suite: A Web-Based Tool for the Analysis of Gene and Protein Interactions, Pathways, and Regulation. PMID:22194743
The human phosphotyrosine signaling network: evolution and hotspots of hijacking in cancer. PMID:22194470
Proteomic analysis of endothelial cold-adaptation. PMID:22192797
The transcriptional coactivator TAZ regulates mesenchymal differentiation in malignant glioma. PMID:22190458
Molecular links between cellular senescence, longevity and age-related diseases - a systems biology perspective. PMID:22184282
Global transcriptomic and proteomic responses of Dehalococcoides ethenogenes strain 195 to fixed nitrogen limitation. PMID:22179257
Regulatory coordination of clustered microRNAs based on microRNA-transcription factor regulatory network. PMID:22176772
Genetic architecture of gene expression in ovine skeletal muscle. PMID:22171619
A genome-wide analysis of open chromatin in human tracheal epithelial cells reveals novel candidate regulatory elements for lung function. PMID:22169360
Gene expression profiling of embryonic human neural stem cells and dopaminergic neurons from adult human substantia nigra. PMID:22163301
Recurrent mutations in the U2AF1 splicing factor in myelodysplastic syndromes. PMID:22158538
Inter-ethnic differences in lymphocyte sensitivity to glucocorticoids reflect variation in transcriptional response. PMID:22158329
Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer. PMID:22156296
Histone deacetylase 3 is an epigenomic brake in macrophage alternative activation. PMID:22156208
GenomeRunner: automating genome exploration. PMID:22155868
An integrative functional genomics approach for discovering biomarkers in schizophrenia. PMID:22155586
Fenfluramine-induced gene dysregulation in human pulmonary artery smooth muscle and endothelial cells. PMID:22140631
Identification of prognostic genes for recurrent risk prediction in triple negative breast cancer patients in Taiwan. PMID:22140552
TRAF6 and IRF7 control HIV replication in macrophages. PMID:22140520
Replication and virus-induced transcriptome of HAdV-5 in normal host cells versus cancer cells--differences of relevance for adenoviral oncolysis. PMID:22140489
Genome-wide copy number variation study associates metabotropic glutamate receptor gene networks with attention deficit hyperactivity disorder. PMID:22138692
Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data. PMID:22135418
INS(GFP/w) human embryonic stem cells facilitate isolation of in vitro derived insulin-producing cells. PMID:22120512
Deep sequencing of MYC DNA-binding sites in Burkitt lymphoma. PMID:22102868
Gene expression profile change and associated physiological and pathological effects in mouse liver induced by fasting and refeeding. PMID:22096593
Intermittent hypoxia activates temporally coordinated transcriptional programs in visceral adipose tissue. PMID:22086141
Effects of genome-wide copy number variation on expression in mammalian cells. PMID:22085887
Genome-wide analysis of gene expression during Xenopus tropicalis tadpole tail regeneration. PMID:22085734
Sequentially acting Sox transcription factors in neural lineage development. PMID:22085726
Global assessment of genomic variation in cattle by genome resequencing and high-throughput genotyping. PMID:22082336
GeneWeaver: a web-based system for integrative functional genomics. PMID:22080549
Sex-dimorphism in cardiac nutrigenomics: effect of trans fat and/or monosodium glutamate consumption. PMID:22078008
RNA sequencing reveals differential expression of mitochondrial and oxidation reduction genes in the long-lived naked mole-rat when compared to mice. PMID:22073188
Over-expression of DSCAM and COL6A2 cooperatively generates congenital heart defects. PMID:22072978
Molecular phenotype of monocytes at the maternal-fetal interface. PMID:22071058
Global expression analysis identified a preferentially nerve growth factor-induced transcriptional program regulated by sustained mitogen-activated protein kinase/extracellular signal-regulated kinase (ERK) and AP-1 protein activation during PC12 cell differentiation. PMID:22065583
Widespread polymorphism in the positions of stop codons in Drosophila melanogaster. PMID:22051795
Identification of common and cell type specific LXXLL motif EcR cofactors using a bioinformatics refined candidate RNAi screen in Drosophila melanogaster cell lines. PMID:22050674
Temporal blastemal cell gene expression analysis in the kidney reveals new Wnt and related signaling pathway genes to be essential for Wilms' tumor onset. PMID:22048167
An integrated transcriptomic and meta-analysis of hepatoma cells reveals factors that influence susceptibility to HCV infection. PMID:22046242
Necdin, a negative growth regulator, is a novel STAT3 target gene down-regulated in human cancer. PMID:22046235
In vivo topoisomerase I inhibition attenuates the expression of hypoxia-inducible factor 1α target genes and decreases tumor angiogenesis. PMID:22033674
Mechanisms of stable lipid loss in a social insect. PMID:22031746
Novel proteomic tools reveal essential roles of SRP and importance of proper membrane protein biogenesis. PMID:22030350
Differential expression of extracellular matrix-mediated pathways in single-suture craniosynostosis. PMID:22028906
The leukemia-specific fusion gene ETV6/RUNX1 perturbs distinct key biological functions primarily by gene repression. PMID:22028862
Temporal coordination of gene networks by Zelda in the early Drosophila embryo. PMID:22028675
Large-scale discovery of ERK2 substrates identifies ERK-mediated transcriptional regulation by ETV3. PMID:22028470
Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling. PMID:22028469
Strain-dependent host transcriptional responses to Toxoplasma infection are largely conserved in mammalian and avian hosts. PMID:22022607
Pattern specification and immune response transcriptional signatures of pericardial and subcutaneous adipose tissue. PMID:22022522
attract: A method for identifying core pathways that define cellular phenotypes. PMID:22022396
Joint binding of OTX2 and MYC in promotor regions is associated with high gene expression in medulloblastoma. PMID:22016811
Proteomic analysis of formalin-fixed paraffin-embedded pancreatic tissue using liquid chromatography tandem mass spectrometry. PMID:22015969
ATXN1 protein family and CIC regulate extracellular matrix remodeling and lung alveolarization. PMID:22014525
Comparison of three quantitative phosphoproteomic strategies to study receptor tyrosine kinase signaling. PMID:22013880
Gene expression profiling of placentae from women with early- and late-onset pre-eclampsia: down-regulation of the angiogenesis-related genes ACVRL1 and EGFL7 in early-onset disease. PMID:22013081
Searching ChIP-seq genomic islands for combinatorial regulatory codes in mouse embryonic stem cells. PMID:22011333
Overexpression of S100B, TM4SF4, and OLFM4 genes is correlated with liver metastasis in Taiwanese colorectal cancer patients. PMID:22011044
Comparison of static immersion and intravenous injection systems for exposure of zebrafish embryos to the natural pathogen Edwardsiella tarda. PMID:22003892
Meta-analysis and genome-wide interpretation of genetic susceptibility to drug addiction. PMID:21999673
Cortical gene expression in spinal cord injury and repair: insight into the functional complexity of the neural regeneration program. PMID:21994489
Molecular perturbations restrict potential for liver repopulation of hepatocytes isolated from non-heart-beating donor rats. PMID:21993967
Identifying cancer biomarkers by network-constrained support vector machines. PMID:21992556
Notch1 mediates uterine stromal differentiation and is critical for complete decidualization in the mouse. PMID:21990372
Targets of the tumor suppressor miR-200 in regulation of the epithelial-mesenchymal transition in cancer. PMID:21987723
Genome-wide mapping of Sox6 binding sites in skeletal muscle reveals both direct and indirect regulation of muscle terminal differentiation by Sox6. PMID:21985497
Microproteomic analysis of 10,000 laser captured microdissected breast tumor cells using short-range sodium dodecyl sulfate-polyacrylamide gel electrophoresis and porous layer open tubular liquid chromatography tandem mass spectrometry. PMID:21982995
Aging enhances the production of reactive oxygen species and bactericidal activity in peritoneal macrophages by upregulating classical activation pathways. PMID:21981794
The effects of mitochondrial genotype on hypoxic survival and gene expression in a hybrid population of the killifish, Fundulus heteroclitus. PMID:21980951
Gene ontology analysis of the centrosome proteomes of Drosophila and human. PMID:21980565
HIF-1 and SKN-1 coordinate the transcriptional response to hydrogen sulfide in Caenorhabditis elegans. PMID:21980473
Novel amplifications in pediatric medulloblastoma identified by genome-wide copy number profiling. PMID:21979893
Comparative analysis of the human hepatic and adipose tissue transcriptomes during LPS-induced inflammation leads to the identification of differential biological pathways and candidate biomarkers. PMID:21978410
The genomic response to courtship song stimulation in female Drosophila melanogaster. PMID:21976688
RNA-Seq analysis in MeV. PMID:21976420
Similarities and differences in peripheral blood gene-expression signatures of individuals with schizophrenia and their first-degree biological relatives. PMID:21972136
Microarray analysis reveals age-related differences in gene expression during the development of osteoarthritis in mice. PMID:21972019
A comprehensive expression profile of microRNAs in porcine pituitary. PMID:21969866
Proteomic analysis of a rat pancreatic stellate cell line using liquid chromatography tandem mass spectrometry (LC-MS/MS). PMID:21968429
Expression profiling of vulvar carcinoma: clues for deranged extracellular matrix remodeling and effects on multiple signaling pathways combined with discrete patient subsets. PMID:21966547
High-throughput analysis of promoter occupancy reveals new targets for Arx, a gene mutated in mental retardation and interneuronopathies. PMID:21966449
Myc, Aurora Kinase A, and mutant p53(R172H) co-operate in a mouse model of metastatic skin carcinoma. PMID:21963848
Trachealess (Trh) regulates all tracheal genes during Drosophila embryogenesis. PMID:21963537
Deciphering c-MYC-regulated genes in two distinct tissues. PMID:21961992
Proteomic analysis of sera from common variable immunodeficiency patients undergoing replacement intravenous immunoglobulin therapy. PMID:21960740
Genome-wide examination of the transcriptional response to ecdysteroids 20-hydroxyecdysone and ponasterone A in Drosophila melanogaster. PMID:21958154
Highly accurate and high-resolution function prediction of RNA binding proteins by fold recognition and binding affinity prediction. PMID:21955494
Gene expression profile in mesenchymal stem cells derived from dental tissues and bone marrow. PMID:21954424
Gain-of-function mutant p53 but not p53 deletion promotes head and neck cancer progression in response to oncogenic K-ras. PMID:21952947
Discovering biological connections between experimental conditions based on common patterns of differential gene expression. PMID:21951600
CD140a identifies a population of highly myelinogenic, migration-competent and efficiently engrafting human oligodendrocyte progenitor cells. PMID:21947029
High expression of BMP pathway genes distinguishes a subset of atypical teratoid/rhabdoid tumors associated with shorter survival. PMID:21946044
Post-fasting olfactory, transcriptional, and feeding responses in Drosophila. PMID:21945372
Differential gene expression profiling of human bone marrow-derived mesenchymal stem cells during adipogenic development. PMID:21943323
Decreased expression of B cell related genes in leukocytes of women with Parkinson's disease. PMID:21943286
Large-scale phosphotyrosine proteomic profiling of rat renal collecting duct epithelium reveals predominance of proteins involved in cell polarity determination. PMID:21940666
A quantitative spatial proteomics analysis of proteome turnover in human cells. PMID:21937730
Proteomic interrogation of human chromatin. PMID:21935452
Genes and pathways affected by CAG-repeat RNA-based toxicity in Drosophila. PMID:21933837
Dissecting inflammatory complications in critically injured patients by within-patient gene expression changes: a longitudinal clinical genomics study. PMID:21931541
SigReannot-mart: a query environment for expression microarray probe re-annotations. PMID:21930501
Gene expression profiling at early organogenesis reveals both common and diverse mechanisms in foregut patterning. PMID:21924257
In Silico discovery of transcription factors as potential diagnostic biomarkers of ovarian cancer. PMID:21923952
Using blood gene signatures for assessing effects of exposure to perfluoroalkyl acids (PFAAs) in humans: the NOWAC postgenome study. PMID:21915359
Disease gene interaction pathways: a potential framework for how disease genes associate by disease-risk modules. PMID:21915342
A network-based approach to prioritize results from genome-wide association studies. PMID:21915301
Conservation of Salmonella infection mechanisms in plants and animals. PMID:21915285
FoxO3A promotes metabolic adaptation to hypoxia by antagonizing Myc function. PMID:21915097
A physical interaction network of dengue virus and human proteins. PMID:21911577
Circadian cycles are the dominant transcriptional rhythm in the intertidal mussel Mytilus californianus. PMID:21911390
A promoter DNA demethylation landscape of human hematopoietic differentiation. PMID:21911366
Deep brain stimulation induces rapidly reversible transcript changes in Parkinson's leucocytes. PMID:21910823
The evolutionarily conserved longevity determinants HCF-1 and SIR-2.1/SIRT1 collaborate to regulate DAF-16/FOXO. PMID:21909281
Alterations in the Aedes aegypti transcriptome during infection with West Nile, dengue and yellow fever viruses. PMID:21909258
A systems biology approach identifies molecular networks defining skeletal muscle abnormalities in chronic obstructive pulmonary disease. PMID:21909251
Inactivation of a single copy of Crebbp selectively alters pre-mRNA processing in mouse hematopoietic stem cells. PMID:21901164
Patterns of gene expression in Drosophila InsP3 receptor mutant larvae reveal a role for InsP3 signaling in carbohydrate and energy metabolism. PMID:21901161
Towards a system level understanding of non-model organisms sampled from the environment: a network biology approach. PMID:21901081
Genomic analysis reveals a novel nuclear factor-κB (NF-κB)-binding site in Alu-repetitive elements. PMID:21896491
Polymicrobial periodontal pathogen transcriptomes in calvarial bone and soft tissue. PMID:21896157
Expression profiling and pathway analysis of Krüppel-like factor 4 in mouse embryonic fibroblasts. PMID:21892412
Mindbomb 1, an E3 ubiquitin ligase, forms a complex with RYK to activate Wnt/β-catenin signaling. PMID:21875946
Insertion sites in engrafted cells cluster within a limited repertoire of genomic areas after gammaretroviral vector gene therapy. PMID:21862999
Gene expression analysis of the embryonic subplate. PMID:21862448
Genome-wide mapping of Myc binding and gene regulation in serum-stimulated fibroblasts. PMID:21860422
Cistrome: an integrative platform for transcriptional regulation studies. PMID:21859476
Genomic analysis of parent-of-origin allelic expression in Arabidopsis thaliana seeds. PMID:21858209
Transcriptional profiling of human liver identifies sex-biased genes associated with polygenic dyslipidemia and coronary artery disease. PMID:21858147
Transcriptomic analysis brings new insight into the biological role of the prion protein during mouse embryogenesis. PMID:21858045
Differential effects of prenatal stress in 5-Htt deficient mice: towards molecular mechanisms of gene × environment interactions. PMID:21857948
Voluntary wheel running reverses age-induced changes in hippocampal gene expression. PMID:21857943
Oxidative stress induced carbonylation in human plasma. PMID:21856457
Hypothesis-driven candidate genes for schizophrenia compared to genome-wide association results. PMID:21854684
Non-additive hepatic gene expression elicited by 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) and 2,2',4,4',5,5'-hexachlorobiphenyl (PCB153) co-treatment in C57BL/6 mice. PMID:21851831
Molecular characterization of transcriptome-wide interactions between highly pathogenic porcine reproductive and respiratory syndrome virus and porcine alveolar macrophages in vivo. PMID:21850204
Histological and transcriptome-wide level characteristics of fetal myofiber hyperplasia during the second half of gestation in Texel and Ujumqin sheep. PMID:21838923
Proteomic analysis of an immortalized mouse pancreatic stellate cell line identifies differentially-expressed proteins in activated vs nonproliferating cell states. PMID:21838295
Gene expression profiling in human high-grade astrocytomas. PMID:21836821
Paraoxonase-2 modulates stress response of endothelial cells to oxidized phospholipids and a bacterial quorum-sensing molecule. PMID:21836061
Transcriptome analysis of embryonic mammary cells reveals insights into mammary lineage establishment. PMID:21834968
Modulation of androgen receptor signaling in hormonal therapy-resistant prostate cancer cell lines. PMID:21829708
Transcriptome analysis of epithelial and stromal contributions to mammogenesis in three week prepartum cows. PMID:21829467
Whole genome expression array profiling highlights differences in mucosal defense genes in Barrett's esophagus and esophageal adenocarcinoma. PMID:21829465
The collagen chaperone HSP47 is a new interactor of APP that affects the levels of extracellular beta-amyloid peptides. PMID:21829458
Reciprocal transcriptional regulation of metabolic and signaling pathways correlates with disease severity in heart failure. PMID:21828333
Comparison of human glomerulus proteomic profiles obtained from low quantities of samples by different mass spectrometry with the comprehensive database. PMID:21827715
Lung gene expression in a rhesus allergic asthma model correlates with physiologic parameters of disease and exhibits common and distinct pathways with human asthma and a mouse asthma model. PMID:21819959
Association between genetic subgroups of pancreatic ductal adenocarcinoma defined by high density 500 K SNP-arrays and tumor histopathology. PMID:21811587
Human β-defensin 3 affects the activity of pro-inflammatory pathways associated with MyD88 and TRIF. PMID:21809339
Resection of non-small cell lung cancers reverses tumor-induced gene expression changes in the peripheral immune system. PMID:21807633
Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression. PMID:21804560
SEAS: a system for SEED-based pathway enrichment analysis. PMID:21799897
Quantitative proteomics identify novel miR-155 target proteins. PMID:21799781
Deregulation of the ubiquitin-proteasome system is the predominant molecular pathology in OPMD animal models and patients. PMID:21798095
GO Trimming: Systematically reducing redundancy in large Gene Ontology datasets. PMID:21798041
Crx broadly modulates the pineal transcriptome. PMID:21797868
Distinct protein degradation profiles are induced by different disuse models of skeletal muscle atrophy. PMID:21791639
Limited redundancy in genes regulated by Cyclin T2 and Cyclin T1. PMID:21791050
The use of genome-wide eQTL associations in lymphoblastoid cell lines to identify novel genetic pathways involved in complex traits. PMID:21789213
Nuclear localization of γ-tubulin affects E2F transcriptional activity and S-phase progression. PMID:21788450
Large-scale methylation domains mark a functional subset of neuronally expressed genes. PMID:21784875
Genome-wide association study of the child behavior checklist dysregulation profile. PMID:21784300
Identification of novel Hoxa1 downstream targets regulating hindbrain, neural crest and inner ear development. PMID:21784065
Interplay between SIN3A and STAT3 mediates chromatin conformational changes and GFAP expression during cellular differentiation. PMID:21779366
Proteomic analysis of polypeptides captured from blood during extracorporeal albumin dialysis in patients with cholestasis and resistant pruritus. PMID:21779339
E-cadherin acts as a regulator of transcripts associated with a wide range of cellular processes in mouse embryonic stem cells. PMID:21779327
Discovering transcription factor binding sites in highly repetitive regions of genomes with multi-read analysis of ChIP-Seq data. PMID:21779159
Waves of early transcriptional activation and pluripotency program initiation during human preimplantation development. PMID:21775417
Transcription profiling of Prss16 (Tssp) can be used to find additional peptidase genes that are candidates for self-peptide generation in the thymus. PMID:21773946
Quantitative temporal proteomic analysis of human embryonic stem cell differentiation into oligodendrocyte progenitor cells. PMID:21770034
MicroRNA gene expression signatures in the developing neural tube. PMID:21770019
Glycosaminoglycans and glucose prevent apoptosis in 4-methylumbelliferone-treated human aortic smooth muscle cells. PMID:21768115
Integration of genome-wide computation DRE search, AhR ChIP-chip and gene expression analyses of TCDD-elicited responses in the mouse liver. PMID:21762485
Gene expression profiling reveals differentially expressed genes in ovarian cancer of the hen: support for oviductal origin? PMID:21761365
Phosphoinositide 3-kinase (PI3K(p110alpha)) directly regulates key components of the Z-disc and cardiac structure. PMID:21757757
Rescue of the mutant CFTR chloride channel by pharmacological correctors and low temperature analyzed by gene expression profiling. PMID:21753184
Interactions between glucocorticoid treatment and cis-regulatory polymorphisms contribute to cellular response phenotypes. PMID:21750684
Genome-wide mapping of imprinted differentially methylated regions by DNA methylation profiling of human placentas from triploidies. PMID:21749726
Systemic response to Campylobacter jejuni infection by profiling gene transcription in the spleens of two genetic lines of chickens. PMID:21748442
Human papillomavirus 16 E5 modulates the expression of host microRNAs. PMID:21747943
Systematic approaches towards the development of host-directed antiviral therapeutics. PMID:21747723
Transcriptomic data-mining approach for identifying potential pharmacogenetic candidates in antiepileptic drug response. PMID:21747590
Transcriptional profiling of C. elegans DAF-19 uncovers a ciliary base-associated protein and a CDK/CCRK/LF2p-related kinase required for intraflagellar transport. PMID:21740898
Recent admixture in an Indian population of African ancestry. PMID:21737057
The cycad genotoxin MAM modulates brain cellular pathways involved in neurodegenerative disease and cancer in a DNA damage-linked manner. PMID:21731631
Interferon regulatory factor 8 regulates pathways for antigen presentation in myeloid cells and during tuberculosis. PMID:21731497
Candida albicans infection of Caenorhabditis elegans induces antifungal immune defenses. PMID:21731485
Transcriptome transfer provides a model for understanding the phenotype of cardiomyocytes. PMID:21730152
Gene expression profiling in male genital lichen sclerosus. PMID:21718371
RuleGO: a logical rules-based tool for description of gene groups by means of Gene Ontology. PMID:21715384
A meta-analysis of single base-pair substitutions in translational termination codons ('nonstop' mutations) that cause human inherited disease. PMID:21712188
Analysis of EGFR signaling pathway in nasopharyngeal carcinoma cells by quantitative phosphoproteomics. PMID:21711528
Transcriptional insights on the regenerative mechanics of axotomized neurons in vitro. PMID:21711447
microRNA-Seq reveals cocaine-regulated expression of striatal microRNAs. PMID:21708909
Cardiac pressure overload hypertrophy is differentially regulated by β-adrenergic receptor subtypes. PMID:21705675
Expression analysis of asthma candidate genes during human and murine lung development. PMID:21699702
Increased expression of the dyslexia candidate gene DCDC2 affects length and signaling of primary cilia in neurons. PMID:21698230
Genome-wide analysis reveals a major role in cell fate maintenance and an unexpected role in endoreduplication for the Drosophila FoxA gene Fork head. PMID:21698206
Expression profiling of FSHD-1 and FSHD-2 cells during myogenic differentiation evidences common and distinctive gene dysregulation patterns. PMID:21695143
A systems level, functional genomics analysis of chronic epilepsy. PMID:21695113
Small molecule amiloride modulates oncogenic RNA alternative splicing to devitalize human cancer cells. PMID:21694768
Genome-wide dFOXO targets and topology of the transcriptomic response to stress and insulin signalling. PMID:21694719
Staphylococcus aureus Biofilm and Planktonic cultures differentially impact gene expression, mapk phosphorylation, and cytokine production in human keratinocytes. PMID:21693040
Proteomics and pathway analyses of the milk fat globule in sheep naturally infected by Mycoplasma agalactiae provide indications of the in vivo response of the mammary epithelium to bacterial infection. PMID:21690237
A systems biology approach sheds new light on Escherichia coli acid resistance. PMID:21690099
Gene expression profiling of the brain: pondering facts and fiction. PMID:21689753
An integrative clustering and modeling algorithm for dynamical gene expression data. PMID:21685097
Discovery of biomarker candidates for coronary artery disease from an APOE-knock out mouse model using iTRAQ-based multiplex quantitative proteomics. PMID:21681990
Gene expression: The autism disconnect. PMID:21677744
Conserved and divergent rhythms of crassulacean acid metabolism-related and core clock gene expression in the cactus Opuntia ficus-indica. PMID:21677095
Protein-network modeling of prostate cancer gene signatures reveals essential pathways in disease recurrence. PMID:21672909
Mutations in PRDM5 in brittle cornea syndrome identify a pathway regulating extracellular matrix development and maintenance. PMID:21664999
Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism. PMID:21658581
Comparison and identification of estrogen-receptor related gene expression profiles in breast cancer of different ethnic origins. PMID:21655371
Genome-wide analysis reveals PADI4 cooperates with Elk-1 to activate c-Fos expression in breast cancer cells. PMID:21655091
Nuclear accumulation of stress response mRNAs contributes to the neurodegeneration caused by Fragile X premutation rCGG repeats. PMID:21655086
A Drosophila model of the neurodegenerative disease SCA17 reveals a role of RBP-J/Su(H) in modulating the pathological outcome. PMID:21653638
ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity. PMID:21652639
Up-regulation of microRNAs in brain of human alcoholics. PMID:21651580
Jejunal gene expression patterns correlate with severity of systemic infection in chicken. PMID:21645319
Deep sequencing reveals novel microRNAs and regulation of microRNA expression during cell senescence. PMID:21637828
Alterations in gene expression profiles correlated with cisplatin cytotoxicity in the glioma U343 cell line. PMID:21637621
Transcriptional response to foraging experience in the honey bee mushroom bodies. PMID:21634017
GLI1 confers profound phenotypic changes upon LNCaP prostate cancer cells that include the acquisition of a hormone independent state. PMID:21633508
Prospective isolation of a bipotential clonogenic liver progenitor cell in adult mice. PMID:21632826
Foxl1-Cre-marked adult hepatic progenitors have clonogenic and bilineage differentiation potential. PMID:21632825
Gene expression profiling and association with prion-related lesions in the medulla oblongata of symptomatic natural scrapie animals. PMID:21629698
A high-throughput platform for lentiviral overexpression screening of the human ORFeome. PMID:21629697
cGMP modulates responses to queen mandibular pheromone in worker honey bees. PMID:21626397
Methylation profile of single hepatocytes derived from hepatitis B virus-related hepatocellular carcinoma. PMID:21625442
Identifier mapping performance for integrating transcriptomics and proteomics experimental results. PMID:21619611
Identification and gene expression profiling of tumor-initiating cells isolated from human osteosarcoma cell lines in an orthotopic mouse model. PMID:21617384
Transcriptional profiling of diabetic neuropathy in the BKS db/db mouse: a model of type 2 diabetes. PMID:21617178
GATA3 expression is decreased in psoriasis and during epidermal regeneration; induction by narrow-band UVB and IL-4. PMID:21611195
Gene targeting and Calcium handling efficiencies in mouse embryonic stem cell lines. PMID:21607130
Gene coexpression network alignment and conservation of gene modules between two grass species: maize and rice. PMID:21606319
Platelets alter gene expression profile in human brain endothelial cells in an in vitro model of cerebral malaria. PMID:21603600
Real-time monitoring of cisplatin-induced cell death. PMID:21603599
Association rule based similarity measures for the clustering of gene expression data. PMID:21603179
GProX, a user-friendly platform for bioinformatics analysis and visualization of quantitative proteomics data. PMID:21602510
piRNA profiling during specific stages of mouse spermatogenesis. PMID:21602304
Genome-wide RNA-seq analysis of human and mouse platelet transcriptomes. PMID:21596849
Two phases of mitogenic signaling unveil roles for p53 and EGR1 in elimination of inconsistent growth signals. PMID:21596316
Genetic and expression analysis of cattle identifies candidate genes in pathways responding to Trypanosoma congolense infection. PMID:21593421
The virulence of 1997 H5N1 influenza viruses in the mouse model is increased by correcting a defect in their NS1 proteins. PMID:21593152
TAFFEL: Independent Enrichment Analysis of gene sets. PMID:21592412
Meta analysis of Chronic Fatigue Syndrome through integration of clinical, gene expression, SNP and proteomic data. PMID:21584188
Identification and replication of loci involved in camptothecin-induced cytotoxicity using CEPH pedigrees. PMID:21573211
Gene expression in the rodent brain is associated with its regional connectivity. PMID:21573208
Binge cocaine administration in adolescent rats affects amygdalar gene expression patterns and alters anxiety-related behavior in adulthood. PMID:21571252
Genome-wide survey reveals dynamic widespread tissue-specific changes in DNA methylation during development. PMID:21569359
Transcriptional landscape of bone marrow-derived very small embryonic-like stem cells during hypoxia. PMID:21569252
Functional characterization and gene expression profiling of α-smooth muscle actin expressing cardiomyocytes derived from murine induced pluripotent stem cells. PMID:21567216
Genomic profiling of genes contributing to metastasis in a mouse model of thyroid follicular carcinoma. PMID:21562609
Airway epithelial transcription factor NK2 homeobox 1 inhibits mucous cell metaplasia and Th2 inflammation. PMID:21562130
Genome-wide DNA methylation analysis reveals phytoestrogen modification of promoter methylation patterns during embryonic stem cell differentiation. PMID:21559447
A customized pigmentation SNP array identifies a novel SNP associated with melanoma predisposition in the SLC45A2 gene. PMID:21559390
Proteomic analyses reveal common promiscuous patterns of cell surface proteins on human embryonic stem cells and sperms. PMID:21559292
Dose-dependent onset of regenerative program in neutron irradiated mouse skin. PMID:21556364
The BTB and CNC homology 1 (BACH1) target genes are involved in the oxidative stress response and in control of the cell cycle. PMID:21555518
In silico analysis of combinatorial microRNA activity reveals target genes and pathways associated with breast cancer metastasis. PMID:21552493
Extensive epigenetic reprogramming in human somatic tissues between fetus and adult. PMID:21545704
NOA: a novel Network Ontology Analysis method. PMID:21543451
A comparison of the Giardia lamblia trophozoite and cyst transcriptome using microarrays. PMID:21542940
Early gene response of human brain microvascular endothelial cells to Listeria monocytogenes infection. PMID:21542783
A mighty small heart: the cardiac proteome of adult Drosophila melanogaster. PMID:21541028
Mechanisms of urokinase plasminogen activator (uPA)-mediated atherosclerosis: role of the uPA receptor and S100A8/A9 proteins. PMID:21536666
Alternatively Spliced Genes as Biomarkers for Schizophrenia, Bipolar Disorder and Psychosis: A Blood-Based Spliceome-Profiling Exploratory Study. PMID:21532980
Role of adhesion molecules and inflammation in Venezuelan equine encephalitis virus infected mouse brain. PMID:21529366
Relationship between gene body DNA methylation and intragenic H3K9me3 and H3K36me3 chromatin marks. PMID:21526191
MicroRNA dysregulation following spinal cord contusion: implications for neural plasticity and repair. PMID:21513774
Genomewide analysis of rat barrel cortex reveals time- and layer-specific mRNA expression changes related to experience-dependent plasticity. PMID:21508239
Human induced pluripotent stem cells derived under feeder-free conditions display unique cell cycle and DNA replication gene profiles. PMID:21506733
Differential Inductive Signaling of CD90 Prostate Cancer-Associated Fibroblasts Compared to Normal Tissue Stromal Mesenchyme Cells. PMID:21505567
Therapeutic hypothermia alters microRNA responses to traumatic brain injury in rats. PMID:21505482
Microarray analysis for Saccharomyces cerevisiae. PMID:21505409
Gene expression patterns in four brain areas associate with quantitative measure of estrous behavior in dairy cows. PMID:21504592
Helicobacter bilis colonization enhances susceptibility to Typhlocolitis following an inflammatory trigger. PMID:21503679
Transcriptomic analysis in a Drosophila model identifies previously implicated and novel pathways in the therapeutic mechanism in neuropsychiatric disorders. PMID:21503142
15 kDa Granulysin versus GM-CSF for monocytes differentiation: analogies and differences at the transcriptome level. PMID:21501511
Expression patterns of microRNAs associated with CML phases and their disease related targets. PMID:21501493
Significant downregulation of platelet gene expression in metastatic lung cancer. PMID:21500395
Fibroblast growth factor 9 delivery during angiogenesis produces durable, vasoresponsive microvessels wrapped by smooth muscle cells. PMID:21499246
Analysis of the human pancreatic stellate cell secreted proteome. PMID:21499210
A search for factors specifying tonotopy implicates DNER in hair-cell development in the chick's cochlea. PMID:21497156
Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells. PMID:21496263
A qualitative and quantitative proteomic study of human microdialysate and the cutaneous response to injury. PMID:21494910
Microarray analysis uncovers a role for Tip60 in nervous system function and general metabolism. PMID:21494552
Identification of a gene regulatory network necessary for the initiation of oligodendrocyte differentiation. PMID:21490970
Differential gene expression analysis of placentas with increased vascular resistance and pre-eclampsia using whole-genome microarrays. PMID:21490790
CD98 expression modulates intestinal homeostasis, inflammation, and colitis-associated cancer in mice. PMID:21490400
Seasonal liver protein differences in a hibernator revealed by quantitative proteomics using whole animal isotopic labeling. PMID:21481655
HLA-DR-presented peptide repertoires derived from human monocyte-derived dendritic cells pulsed with blood coagulation factor VIII. PMID:21467215
Modulation of chromatin position and gene expression by HDAC4 interaction with nucleoporins. PMID:21464227
Crosstalk between c-Jun and TAp73alpha/beta contributes to the apoptosis-survival balance. PMID:21459846
Diagnosis of prostate cancer using differentially expressed genes in stroma. PMID:21459804
Genome-wide localization of SREBP-2 in hepatic chromatin predicts a role in autophagy. PMID:21459322
Functional implications of microRNAs in acute myeloid leukemia by integrating microRNA and messenger RNA expression profiling. PMID:21455993
Genetic control of chicken heterophil function in advanced intercross lines: associations with novel and with known Salmonella resistance loci and a likely mechanism for cell death in extracellular trap production. PMID:21455609
Alignment of gene expression profiles from test samples against a reference database: New method for context-specific interpretation of microarray data. PMID:21453538
Parental ages and levels of DNA methylation in the newborn are correlated. PMID:21453505
Altered gene expression profiles in the brain, kidney, and lung of one-month-old cloned pigs. PMID:21453050
A nuclear variant of ErbB3 receptor tyrosine kinase regulates ezrin distribution and Schwann cell myelination. PMID:21451047
Joint analysis of transcriptional and post- transcriptional brain tumor data: searching for emergent properties of cellular systems. PMID:21450054
KDM5B regulates embryonic stem cell self-renewal and represses cryptic intragenic transcription. PMID:21448134
Activation of interferon signaling pathways in spinal cord astrocytes from an ALS mouse model. PMID:21446050
GOBO: gene expression-based outcome for breast cancer online. PMID:21445301
Genetic analysis of Down syndrome-associated heart defects in mice. PMID:21442329
Population-based resequencing of experimentally evolved populations reveals the genetic basis of body size variation in Drosophila melanogaster. PMID:21437274
Genome-wide DNA methylation patterns in CD4+ T cells from patients with systemic lupus erythematosus. PMID:21436623
Functional microRNA involved in endometriosis. PMID:21436257
Comparative transcriptome profiling of amyloid precursor protein family members in the adult cortex. PMID:21435241
Breast cancer methylomes establish an epigenomic foundation for metastasis. PMID:21430268
Extensive chromatin remodelling and establishment of transcription factor 'hotspots' during early adipogenesis. PMID:21427703
Differential coexpression analysis of obesity-associated networks in human subcutaneous adipose tissue. PMID:21427694
Dynamic changes in the microRNA expression profile reveal multiple regulatory mechanisms in the spinal nerve ligation model of neuropathic pain. PMID:21423802
Do two machine-learning based prognostic signatures for breast cancer capture the same biological processes? PMID:21423753
Changes in whole blood gene expression in obese subjects with type 2 diabetes following bariatric surgery: a pilot study. PMID:21423737
Genes and gene ontologies common to airflow obstruction and emphysema in the lungs of patients with COPD. PMID:21423603
Dynamic molecular and histopathological changes in the extracellular matrix and inflammation in the transition to heart failure in isolated volume overload. PMID:21421827
GO-Module: functional synthesis and improved interpretation of Gene Ontology patterns. PMID:21421553
System level changes in gene expression in maturing bladder mucosa. PMID:21421225
Network based transcription factor analysis of regenerating axolotl limbs. PMID:21418574
COSINE: COndition-SpecIfic sub-NEtwork identification using a global optimization method. PMID:21414987
Label-free proteomics and systems biology analysis of mycobacterial phagosomes in dendritic cells and macrophages. PMID:21413810
Adjunctive dexamethasone affects the expression of genes related to inflammation, neurogenesis and apoptosis in infant rat pneumococcal meningitis. PMID:21412436
Sequential analysis of global gene expression profiles in immature and in vitro matured bovine oocytes: potential molecular markers of oocyte maturation. PMID:21410957
Genomic and proteomic analysis of the impact of mitotic quiescence on the engraftment of human CD34+ cells. PMID:21408179
A new FACS approach isolates hESC derived endoderm using transcription factors. PMID:21408072
The unfolded protein response transducer IRE1α prevents ER stress-induced hepatic steatosis. PMID:21407177
Use of transcriptional signatures induced in lymphoid and myeloid cell lines as an inflammatory biomarker in Type 1 diabetes. PMID:21406607
Redox proteomics of protein-bound methionine oxidation. PMID:21406390
A CHOP-regulated microRNA controls rhodopsin expression. PMID:21402790
Endothelial Jarid2/Jumonji is required for normal cardiac development and proper Notch1 expression. PMID:21402699
Cranberry proanthocyanidins mediate growth arrest of lung cancer cells through modulation of gene expression and rapid induction of apoptosis. PMID:21399574
Differential gene expression in normal and transformed human mammary epithelial cells in response to oxidative stress. PMID:21397008
Phospho-proteomic analysis of mantle cell lymphoma cells suggests a pro-survival role of B-cell receptor signaling. PMID:21394647
Classical Hodgkin's lymphoma shows epigenetic features of abortive plasma cell differentiation. PMID:21393330
Identifying causal genes and dysregulated pathways in complex diseases. PMID:21390271
Identification of ER proteins involved in the functional organisation of the early secretory pathway in Drosophila cells by a targeted RNAi screen. PMID:21383842
Autism and increased paternal age related changes in global levels of gene expression regulation. PMID:21379579
Dynamics of the transcriptome response of cultured human embryonic stem cells to ionizing radiation exposure. PMID:21376742
Identification of microRNA-mRNA modules using microarray data. PMID:21375780
Organelles contribute differentially to reactive oxygen species-related events during extended darkness. PMID:21372201
The biology of lysine acetylation integrates transcriptional programming and metabolism. PMID:21371315
Somatic coding mutations in human induced pluripotent stem cells. PMID:21368825
Combined transcriptome analysis of fetal human and mouse cerebral cortex exposed to alcohol. PMID:21368140
Complement protein C1q-mediated neuroprotection is correlated with regulation of neuronal gene and microRNA expression. PMID:21368058
Connectedness of PPI network neighborhoods identifies regulatory hub proteins. PMID:21367871
A computational method for prediction of excretory proteins and application to identification of gastric cancer markers in urine. PMID:21365014
Genome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver. PMID:21364973
Nuclear and cytoplasmic localization of neural stem cell microRNAs. PMID:21363885
Mass spectrometry-based proteomics of endoscopically collected pancreatic fluid in chronic pancreatitis research. PMID:21360826
Distinct early molecular responses to mutations causing vLINCL and JNCL presage ATP synthase subunit C accumulation in cerebellar cells. PMID:21359198
Mapping protein interactions between Dengue virus and its human and insect hosts. PMID:21358811
Resolution of infection promotes a state of dormancy and long survival of CD4 memory T cells. PMID:21358746
Early patterns of gene expression correlate with the humoral immune response to influenza vaccination in humans. PMID:21357945
Prognostic significance and tumor biology of regional lymph node disease in patients with rhabdomyosarcoma: a report from the Children's Oncology Group. PMID:21357792
Time course analysis of gene expression identifies multiple genes with differential expression in patients with in-stent restenosis. PMID:21356094
Multifaceted role of nitric oxide in an in vitro mouse neuronal injury model: transcriptomic profiling defines the temporal recruitment of death signalling cascades. PMID:21352476
Transcriptome signature of the adult mouse choroid plexus. PMID:21349147
A systems biological view of intracellular pathogens. PMID:21349090
Identification of the target proteins of rosiglitazone in 3T3-L1 adipocytes through proteomic analysis of cytosolic and secreted proteins. PMID:21347706
Characterization of the contradictory chromatin signatures at the 3' exons of zinc finger genes. PMID:21347206
Analysis of common and specific mechanisms of liver function affected by nitrotoluene compounds. PMID:21346803
Recapitulation of premature ageing with iPSCs from Hutchinson-Gilford progeria syndrome. PMID:21346760
The gut mucosal viral reservoir in HIV-infected patients is not the major source of rebound plasma viremia following interruption of highly active antiretroviral therapy. PMID:21345945
Functional analysis of KAP1 genomic recruitment. PMID:21343339
Integrated metabolome and transcriptome analysis of the NCI60 dataset. PMID:21342567
Mesenchymal stromal cells from neonatal tracheal aspirates demonstrate a pattern of lung-specific gene expression. PMID:21341990
Prdm14 initiates lymphoblastic leukemia after expanding a population of cells resembling common lymphoid progenitors. PMID:21339739
MicroRNAs regulate the timing of embryo maturation in Arabidopsis. PMID:21330492
Proteomic analysis of acetaminophen-induced changes in mitochondrial protein expression using spectral counting. PMID:21329376
Identification of differential protein interactors of lamin A and progerin. PMID:21327095
A PXR-mediated negative feedback loop attenuates the expression of CYP3A in response to the PXR agonist pregnenalone-16α-carbonitrile. PMID:21311750
Genome-wide analysis of transcription factor E2F1 mutant proteins reveals that N- and C-terminal protein interaction domains do not participate in targeting E2F1 to the human genome. PMID:21310950
Retinoic acid inhibits endometrial cancer cell growth via multiple genomic mechanisms. PMID:21310893
Mitochondria, oligodendrocytes and inflammation in bipolar disorder: evidence from transcriptome studies points to intriguing parallels with multiple sclerosis. PMID:21310238
Racial differences in gene-specific DNA methylation levels are present at birth. PMID:21308978
During hormone depletion or tamoxifen treatment of breast cancer cells the estrogen receptor apoprotein supports cell cycling through the retinoic acid receptor α1 apoprotein. PMID:21299862
Amplification of the 20q chromosomal arm occurs early in tumorigenic transformation and may initiate cancer. PMID:21297939
Exploiting Statistical Methodologies and Controlled Vocabularies for Prioritized Functional Analysis of Genomic Experiments: the StRAnGER Web Application. PMID:21293737
Differential gene expression in liver and small intestine from lactating rats compared to age-matched virgin controls detects increased mRNA of cholesterol biosynthetic genes. PMID:21291544
Wide-ranging DNA methylation differences of primary trophoblast cell populations and derived cell lines: implications and opportunities for understanding trophoblast function. PMID:21289002
Functional relevance of CpG island length for regulation of gene expression. PMID:21288871
MicroRNAs MiR-17, MiR-20a, and MiR-106b act in concert to modulate E2F activity on cell cycle arrest during neuronal lineage differentiation of USSC. PMID:21283765
Whole transcriptome sequencing reveals gene expression and splicing differences in brain regions affected by Alzheimer's disease. PMID:21283692
Genome-wide polymorphism and comparative analyses in the white-tailed deer (Odocoileus virginianus): a model for conservation genomics. PMID:21283515
Dengue-2 structural proteins associate with human proteins to produce a coagulation and innate immune response biased interactome. PMID:21281507
Effects of cryopreservation on the transcriptome of human embryonic stem cells after thawing and culturing. PMID:21279480
Comprehensive analysis of host gene expression in Autographa californica nucleopolyhedrovirus-infected Spodoptera frugiperda cells. PMID:21276998
Uncovering the global host cell requirements for influenza virus replication via RNAi screening. PMID:21276872
Maternal undernourished fetal kidneys exhibit differential regulation of nephrogenic genes including downregulation of the Notch signaling pathway. PMID:21273641
Bioinformatic detection of E47, E2F1 and SREBP1 transcription factors as potential regulators of genes associated to acquisition of endometrial receptivity. PMID:21272326
Whole-genome analysis reveals that active heat shock factor binding sites are mostly associated with non-heat shock genes in Drosophila melanogaster. PMID:21264254
A key role for poly(ADP-ribose) polymerase 3 in ectodermal specification and neural crest development. PMID:21264220
Overexpression of SUMO perturbs the growth and development of Caenorhabditis elegans. PMID:21253676
Biological assessment of robust noise models in microarray data analysis. PMID:21252077
Global transcriptome analysis of human bone marrow stromal cells (BMSC) reveals proliferative, mobile and interactive cells that produce abundant extracellular matrix proteins, some of which may affect BMSC potency. PMID:21250865
Wide-ranging functions of E2F4 in transcriptional activation and repression revealed by genome-wide analysis. PMID:21247883
A noise-reduction GWAS analysis implicates altered regulation of neurite outgrowth and guidance in autism. PMID:21247446
A multiprotein binding interface in an intrinsically disordered region of the tumor suppressor protein interferon regulatory factor-1. PMID:21245151
Modeling the cumulative genetic risk for multiple sclerosis from genome-wide association data. PMID:21244703
WebGimm: An integrated web-based platform for cluster analysis, functional analysis, and interactive visualization of results. PMID:21241501
Cerebral gene expression in response to single or combined gestational exposure to methylmercury and selenium through the maternal diet. PMID:21240674
Rat neonatal beta cells lack the specialised metabolic phenotype of mature beta cells. PMID:21240476
Overlapping and distinct pRb pathways in the mammalian auditory and vestibular organs. PMID:21239885
Increased mRNA Levels of TCF7L2 and MYC of the Wnt Pathway in Tg-ArcSwe Mice and Alzheimer's Disease Brain. PMID:21234373
Aberrant overexpression of satellite repeats in pancreatic and other epithelial cancers. PMID:21233348
On acute gene expression changes after ventral root replantation. PMID:21228913
Phosphatase and tensin homologue/protein kinase B pathway linked to motor neuron survival in human superoxide dismutase 1-related amyotrophic lateral sclerosis. PMID:21228060
Pathway-based analysis using reduced gene subsets in genome-wide association studies. PMID:21226955
MED29, a component of the mediator complex, possesses both oncogenic and tumor suppressive characteristics in pancreatic cancer. PMID:21225629
Molecular profiles of drinking alcohol to intoxication in C57BL/6J mice. PMID:21223303
Methylation profiling with a panel of cancer related genes: association with estrogen receptor, TP53 mutation status and expression subtypes in sporadic breast cancer. PMID:21212030
TEAD1-dependent expression of the FoxO3a gene in mouse skeletal muscle. PMID:21211055
Engineering of red cells of Arabidopsis thaliana and comparative genome-wide gene expression analysis of red cells versus wild-type cells. PMID:21210143
A widespread distribution of genomic CeMyoD binding sites revealed and cross validated by ChIP-Chip and ChIP-Seq techniques. PMID:21209968
Global expression of cell surface proteins in embryonic stem cells. PMID:21209962
RNAi screen of DAF-16/FOXO target genes in C. elegans links pathogenesis and dauer formation. PMID:21209831
Suppression of Stra8 expression in the mouse gonad by WIN 18,446. PMID:21209416
Identification of maternally regulated fetal gene networks in the placenta with a novel embryo transfer system in mice. PMID:21205871
Quantitative proteomic analysis of S-nitrosated proteins in diabetic mouse liver with ICAT switch method. PMID:21203939
Cytosine arabinoside induces ectoderm and inhibits mesoderm expression in human embryonic stem cells during multilineage differentiation. PMID:21198554
A systems view of epithelial-mesenchymal transition signaling states. PMID:21194007
OLIG2 is differentially expressed in pediatric astrocytic and in ependymal neoplasms. PMID:21193945
Specific and shared targets of ephrin A signaling in epidermal keratinocytes. PMID:21193391
Time-resolved quantitative proteome analysis of in vivo intestinal development. PMID:21191033
Matrix metalloproteinase-8 deficiency increases joint inflammation and bone erosion in the K/BxN serum-transfer arthritis model. PMID:21190566
Characterization of the core elements of the NF-κB signaling pathway of the sea anemone Nematostella vectensis. PMID:21189285
A tissue-specific atlas of mouse protein phosphorylation and expression. PMID:21183079
The Protein Information and Property Explorer 2: gaggle-like exploration of biological proteomic data within one webpage. PMID:21182202
The curcuminoid CLEFMA selectively induces cell death in H441 lung adenocarcinoma cells via oxidative stress. PMID:21181232
Chromatin remodeling pathways in smooth muscle cell differentiation, and evidence for an integral role for p300. PMID:21179216
Characterization of the macrophage transcriptome in glomerulonephritis-susceptible and -resistant rat strains. PMID:21179115
Polycomb preferentially targets stalled promoters of coding and noncoding transcripts. PMID:21177970
Acquisition of host-derived CD40L by HIV-1 in vivo and its functional consequences in the B-cell compartment. PMID:21177803
seqMINER: an integrated ChIP-seq data interpretation platform. PMID:21177645
From RNA-seq reads to differential expression results. PMID:21176179
ZNF274 recruits the histone methyltransferase SETDB1 to the 3' ends of ZNF genes. PMID:21170338
Endothelin-1 increases collagen accumulation in renal mesangial cells by stimulating a chemokine and cytokine autocrine signaling loop. PMID:21169360
Transcriptomic analysis of cell-free fetal RNA suggests a specific molecular phenotype in trisomy 18. PMID:21152935
Phosphoproteomics profiling of human skin fibroblast cells reveals pathways and proteins affected by low doses of ionizing radiation. PMID:21152398
The reverse transcription inhibitor abacavir shows anticancer activity in prostate cancer cell lines. PMID:21151977
Deconstructing the molecular portraits of breast cancer. PMID:21147047
Elevated copper remodels hepatic RNA processing machinery in the mouse model of Wilson's disease. PMID:21146535
Extending pathways and processes using molecular interaction networks to analyse cancer genome data. PMID:21144022
Investigation gene and microRNA expression in glioblastoma. PMID:21143783
CREB-mediated alterations in the amygdala transcriptome: coordinated regulation of immune response genes following cocaine. PMID:21138621
Exploration of the normal human bronchoalveolar lavage fluid proteome. PMID:21136857
Serum response factor utilizes distinct promoter- and enhancer-based mechanisms to regulate cytoskeletal gene expression in macrophages. PMID:21135125
Networked-based characterization of extracellular matrix proteins from adult mouse pulmonary and aortic valves. PMID:21133377
Gene expression in skin and lymphoblastoid cells: Refined statistical method reveals extensive overlap in cis-eQTL signals. PMID:21129726
ΔNp63 is an ectodermal gatekeeper of epidermal morphogenesis. PMID:21127502
Gene coexpression network topology of cardiac development, hypertrophy, and failure. PMID:21127201
Analysis of transcript and protein overlap in a human osteosarcoma cell line. PMID:21126332
GLay: community structure analysis of biological networks. PMID:21123224
Mining functionally relevant gene sets for analyzing physiologically novel clinical expression data. PMID:21121032
Regulation of male germ cell cycle arrest and differentiation by DND1 is modulated by genetic background. PMID:21115610
Intermittent hypoxia mobilizes bone marrow-derived very small embryonic-like stem cells and activates developmental transcriptional programs in mice. PMID:21102985
Assembling ligands in situ using bioorthogonal boronate ester synthesis. PMID:21095566
Bovine proteins containing poly-glutamine repeats are often polymorphic and enriched for components of transcriptional regulatory complexes. PMID:21092319
Microarray analysis of nemorosone-induced cytotoxic effects on pancreatic cancer cells reveals activation of the unfolded protein response (UPR). PMID:21091652
Vitreous proteomics and diabetic retinopathy. PMID:21091014
Enrichment map: a network-based method for gene-set enrichment visualization and interpretation. PMID:21085593
Genetic associations of variants in genes encoding HIV-dependency factors required for HIV-1 infection. PMID:21083371
Integrative functional genomics analysis of sustained polyploidy phenotypes in breast cancer cells identifies an oncogenic profile for GINS2. PMID:21082043
Importance of genetic background for risk of relapse shown in altered prefrontal cortex gene expression during abstinence following chronic alcohol intoxication. PMID:21081154
Insights into metazoan evolution from Alvinella pompejana cDNAs. PMID:21080938
Dual DNA methylation patterns in the CNS reveal developmentally poised chromatin and monoallelic expression of critical genes. PMID:21079792
Epigenetic domains found in mouse embryonic stem cells via a hidden Markov model. PMID:21073706
Genetic identification of unique immunological responses in mice infected with virulent and attenuated Francisella tularensis. PMID:21070859
Schizophrenia and vitamin D related genes could have been subject to latitude-driven adaptation. PMID:21070662
Genomic analysis reveals pre- and postchallenge differences in a rhesus macaque AIDS vaccine trial: insights into mechanisms of vaccine efficacy. PMID:21068249
Transcriptomic analysis of the temporal host response to skin infestation with the ectoparasitic mite Psoroptes ovis. PMID:21067579
MYBPC1 computational phosphoprotein network construction and analysis between frontal cortex of HIV encephalitis (HIVE) and HIVE-control patients. PMID:21061152
A comparative analysis of gene-expression data of multiple cancer types. PMID:21060876
The LARGE principle of cellular reprogramming: lost, acquired and retained gene expression in foreskin and amniotic fluid-derived human iPS cells. PMID:21060825
Prostate cancer gene expression signature of patients with high body mass index. PMID:21060327
Reversal of preexisting hyperglycemia in diabetic mice by acute deletion of the Men1 gene. PMID:21059956
Gene expression profiling of the androgen independent prostate cancer cells demonstrates complex mechanisms mediating resistance to docetaxel. PMID:21057205
Modulation of gene expression in endothelial cells by hyperlipaemic postprandial serum from healthy volunteers. PMID:21052530
Whole transcriptome analysis of the fasting and fed Burmese python heart: insights into extreme physiological cardiac adaptation. PMID:21045117
Dampened activity of E2F1-DP and Myb-MuvB transcription factors in Drosophila endocycling cells. PMID:21045111
Integrative systems biology for data-driven knowledge discovery. PMID:21044756
Gram-positive pathogenic bacteria induce a common early response in human monocytes. PMID:21044323
Prioritizing genes associated with prostate cancer development. PMID:21044312
The CrebA/Creb3-like transcription factors are major and direct regulators of secretory capacity. PMID:21041443
Friedreich's ataxia induced pluripotent stem cells model intergenerational GAA⋅TTC triplet repeat instability. PMID:21040903
Methods for transcriptomic analyses of the porcine host immune response: application to Salmonella infection using microarrays. PMID:21036404
Basal bioenergetic abnormalities in skeletal muscle from ryanodine receptor malignant hyperthermia-susceptible R163C knock-in mice. PMID:20978128
Study on differences in the pathology, T cell subsets and gene expression in susceptible and non-susceptible hosts infected with Schistosoma japonicum. PMID:20976156
Bypass mechanisms of the androgen receptor pathway in therapy-resistant prostate cancer cell models. PMID:20976069
eXtraembryonic ENdoderm (XEN) stem cells produce factors that activate heart formation. PMID:20975998
High-density lipoprotein suppresses the type I interferon response, a family of potent antiviral immunoregulators, in macrophages challenged with lipopolysaccharide. PMID:20974999
P-selectin glycoprotein ligand-1 deficiency is protective against obesity-related insulin resistance. PMID:20971965
Differential alterations in gene expression profiles contribute to time-dependent effects of nandrolone to prevent denervation atrophy. PMID:20969782
PathEx: a novel multi factors based datasets selector web tool. PMID:20969778
An integrated transcriptomic and computational analysis for biomarker identification in gastric cancer. PMID:20965966
Chronic high-fat diet in fathers programs β-cell dysfunction in female rat offspring. PMID:20962845
Gene duplications in prokaryotes can be associated with environmental adaptation. PMID:20961426
Dynamics of protein damage in yeast frataxin mutant exposed to oxidative stress. PMID:20958246
A network of cancer genes with co-occurring and anti-co-occurring mutations. PMID:20957180
The mammalian Sin3 proteins are required for muscle development and sarcomere specification. PMID:20956564
TGFβ-1 and Wnt-3a interact to induce unique gene expression profiles in murine embryonic palate mesenchymal cells. PMID:20955781
Protective effects and potential mechanisms of Pien Tze Huang on cerebral chronic ischemia and hypertensive stroke. PMID:20955558
Sp1 acetylation is associated with loss of DNA binding at promoters associated with cell cycle arrest and cell death in a colon cell line. PMID:20950428
Transcript profiling of Elf5+/- mammary glands during pregnancy identifies novel targets of Elf5. PMID:20949099
Identification of genetic and epigenetic marks involved in population structure. PMID:20949057
Gene expression profiling of U12-type spliceosome mutant Drosophila reveals widespread changes in metabolic pathways. PMID:20949011
RB-pathway disruption in breast cancer: differential association with disease subtypes, disease-specific prognosis and therapeutic response. PMID:20948315
A Myc network accounts for similarities between embryonic stem and cancer cell transcription programs. PMID:20946988
TGF-β and insulin signaling regulate reproductive aging via oocyte and germline quality maintenance. PMID:20946987
Trimming of mammalian transcriptional networks using network component analysis. PMID:20942926
Statistical analysis strategies for association studies involving rare variants. PMID:20940738
Conjunctival transcriptome in scarring trachoma. PMID:20937763
Dynamic transcriptomic profiles of zebrafish gills in response to zinc supplementation. PMID:20937081
Gene Expression Profiling in Wild-Type and PPARα-Null Mice Exposed to Perfluorooctane Sulfonate Reveals PPARα-Independent Effects. PMID:20936131
Trans-SILAC: sorting out the non-cell-autonomous proteome. PMID:20935649
Dynamic transcriptomic profiles of zebrafish gills in response to zinc depletion. PMID:20932299
ATF3, an adaptive-response gene, enhances TGF{beta} signaling and cancer-initiating cell features in breast cancer cells. PMID:20930144
QKI-7 regulates expression of interferon-related genes in human astrocyte glioma cells. PMID:20927331
DNA methylation and genome evolution in honeybee: gene length, expression, functional enrichment covary with the evolutionary signature of DNA methylation. PMID:20924039
Identification of the Rage-dependent gene regulatory network in a mouse model of skin inflammation. PMID:20923549
TNFRSF11B computational development network construction and analysis between frontal cortex of HIV encephalitis (HIVE) and HIVE-control patients. PMID:20920282
Comparative transcriptional profiling of the limbal epithelial crypt demonstrates its putative stem cell niche characteristics. PMID:20920242
Toward a complete in silico, multi-layered embryonic stem cell regulatory network. PMID:20890967
Comparative epigenomic analysis of murine and human adipogenesis. PMID:20887899
Pathogen specific, IRF3-dependent signaling and innate resistance to human kidney infection. PMID:20886096
Identification of novel p53 pathway activating small-molecule compounds reveals unexpected similarities with known therapeutic agents. PMID:20885994
Functional annotation of genes overlapping copy number variants in autistic patients: focus on axon pathfinding. PMID:20885821
Finding the "dark matter" in human and yeast protein network prediction and modelling. PMID:20885791
Arsenic- and cadmium-induced toxicogenomic response in mouse embryos undergoing neurulation. PMID:20883709
Asymmetric microarray data produces gene lists highly predictive of research literature on multiple cancer types. PMID:20875095
Natural variation, functional pleiotropy and transcriptional contexts of odorant binding protein genes in Drosophila melanogaster. PMID:20870963
Gene expression variability within and between human populations and implications toward disease susceptibility. PMID:20865155
Quantitative, high-resolution epigenetic profiling of CpG loci identifies associations with cord blood plasma homocysteine and birth weight in humans. PMID:20864804
Alternative translation start sites are conserved in eukaryotic genomes. PMID:20864444
Self-contained gene-set analysis of expression data: an evaluation of existing and novel methods. PMID:20862301
Expression profiling in canine osteosarcoma: identification of biomarkers and pathways associated with outcome. PMID:20860831
Aberrant DNA hypermethylation signature in acute myeloid leukemia directed by EVI1. PMID:20855866
The G protein-coupled receptor T-cell death-associated gene 8 (TDAG8) facilitates tumor development by serving as an extracellular pH sensor. PMID:20855608
GLD-2/RNP-8 cytoplasmic poly(A) polymerase is a broad-spectrum regulator of the oogenesis program. PMID:20855596
Functional conservation of DNA methylation in the pea aphid and the honeybee. PMID:20855427
p53 prevents progression of nevi to melanoma predominantly through cell cycle regulation. PMID:20849464
Identification of osteocyte-selective proteins. PMID:20845334
Genome-wide analysis of a long-term evolution experiment with Drosophila. PMID:20844486
Macaque proteome response to highly pathogenic avian influenza and 1918 reassortant influenza virus infections. PMID:20844032
Global transcriptional profiles of beating clusters derived from human induced pluripotent stem cells and embryonic stem cells are highly similar. PMID:20843318
Intrinsic depot-specific differences in the secretome of adipose tissue, preadipocytes, and adipose tissue-derived microvascular endothelial cells. PMID:20841607
Gene signatures in wound tissue as evidenced by molecular profiling in the chick embryo model. PMID:20840761
The proneural molecular signature is enriched in oligodendrogliomas and predicts improved survival among diffuse gliomas. PMID:20838435
MicroRNA-218 is deleted and downregulated in lung squamous cell carcinoma. PMID:20838434
Differential roles of Sall4 isoforms in embryonic stem cell pluripotency. PMID:20837710
Hopx and Hdac2 interact to modulate Gata4 acetylation and embryonic cardiac myocyte proliferation. PMID:20833366
Investigating neoplastic progression of ulcerative colitis with label-free comparative proteomics. PMID:20828217
Identification and expression of potential regulators of the mammalian mitotic-to-meiotic transition. PMID:20826732
Enhanced function of prefrontal serotonin 5-HT(2) receptors in a rat model of psychiatric vulnerability. PMID:20826676
Gene expression profiles in a rabbit model of systemic lupus erythematosus autoantibody production. PMID:20817871
Molecular mechanistic associations of human diseases. PMID:20815942
Using expression genetics to study the neurobiology of ethanol and alcoholism. PMID:20813241
Phenotypic and molecular characterization of the claudin-low intrinsic subtype of breast cancer. PMID:20813035
Cardiac fibrosis in mice with hypertrophic cardiomyopathy is mediated by non-myocyte proliferation and requires Tgf-β. PMID:20811150
Picoplatin overcomes resistance to cell toxicity in small-cell lung cancer cells previously treated with cisplatin and carboplatin. PMID:20809122
Genome-wide profiling of p63 DNA-binding sites identifies an element that regulates gene expression during limb development in the 7q21 SHFM1 locus. PMID:20808887
Profiling and functional analyses of microRNAs and their target gene products in human uterine leiomyomas. PMID:20808773
The effect of simulated microgravity on human mesenchymal stem cells cultured in an osteogenic differentiation system: a bioinformatics study. PMID:20807102
A maternal low protein diet has pronounced effects on mitochondrial gene expression in offspring liver and skeletal muscle; protective effect of taurine. PMID:20804614
Heat shock transcription factor 1 localizes to sex chromatin during meiotic repression. PMID:20802198
Forty-eight hours of unloading and 24 h of reloading lead to changes in global gene expression patterns related to ubiquitination and oxidative stress in humans. PMID:20798274
Prediction of regulatory networks in mouse abdominal wall. PMID:20797427
Gene expression profiling in brain of mice exposed to the marine neurotoxin ciguatoxin reveals an acute anti-inflammatory, neuroprotective response. PMID:20796285
Mitochondrial abnormalities in the putamen in Parkinson's disease dyskinesia. PMID:20740286
Microarray analysis of iris gene expression in mice with mutations influencing pigmentation. PMID:20739468
In situ proteomic analysis of human breast cancer epithelial cells using laser capture microdissection: annotation by protein set enrichment analysis and gene ontology. PMID:20739354
3-Methylcholanthrene (3-MC) and 4-chlorobiphenyl (PCB3) genotoxicity is gender-related in Fischer 344 transgenic rats. PMID:20739065
Characterization of macaque pulmonary fluid proteome during monkeypox infection: dynamics of host response. PMID:20736407
Transcriptional regulation by CHIP/LDB complexes. PMID:20730086
Sex-related differences in gene expression following Coxiella burnetii infection in mice: potential role of circadian rhythm. PMID:20730052
Altered gene expression profiles in the brain, kidney, and lung of deceased neonatal cloned pigs. PMID:20726773
Negative energy balance and hepatic gene expression patterns in high-yielding dairy cows during the early postpartum period: a global approach. PMID:20716645
A comparative analysis of extra-embryonic endoderm cell lines. PMID:20711519
Widespread protein aggregation as an inherent part of aging in C. elegans. PMID:20711477
An ESRP-regulated splicing programme is abrogated during the epithelial-mesenchymal transition. PMID:20711167
Integrative genomic approaches highlight a family of parasite-specific kinases that regulate host responses. PMID:20709297
Transcription profiling of Epstein-Barr virus nuclear antigen (EBNA)-1 expressing cells suggests targeting of chromatin remodeling complexes. PMID:20706582
Cross-species comparison of genomewide gene expression profiles reveals induction of hypoxia-inducible factor-responsive genes in iron-deprived intestinal epithelial cells. PMID:20702690
Quantitative proteomic analyses of influenza virus-infected cultured human lung cells. PMID:20702633
NK cell terminal differentiation: correlated stepwise decrease of NKG2A and acquisition of KIRs. PMID:20700504
Transcriptional profiling of intrinsic PNS factors in the postnatal mouse. PMID:20696251
TAM: a method for enrichment and depletion analysis of a microRNA category in a list of microRNAs. PMID:20696049
Mutant p53(R175H) upregulates Twist1 expression and promotes epithelial-mesenchymal transition in immortalized prostate cells. PMID:20689556
Octamer-binding factor 6 (Oct-6/Pou3f1) is induced by interferon and contributes to dsRNA-mediated transcriptional responses. PMID:20687925
Dynamics of dendritic cell maturation are identified through a novel filtering strategy applied to biological time-course microarray replicates. PMID:20682054
miR-451 protects against erythroid oxidant stress by repressing 14-3-3zeta. PMID:20679398
Defective erythroid differentiation in miR-451 mutant mice mediated by 14-3-3zeta. PMID:20679397
Body mass index-independent inflammation in omental adipose tissue associated with insulin resistance in morbid obesity. PMID:20678967
Gene expression profiling of the local cecal response of genetic chicken lines that differ in their susceptibility to Campylobacter jejuni colonization. PMID:20676366
A two-parameter generalized Poisson model to improve the analysis of RNA-seq data. PMID:20671027
A quantitative approach to study indirect effects among disease proteins in the human protein interaction network. PMID:20670417
The association of multiple interacting genes with specific phenotypes in rice using gene coexpression networks. PMID:20668062
Phospholipid transfer protein in human plasma associates with proteins linked to immunity and inflammation. PMID:20666409
Molecular diversity in ductal carcinoma in situ (DCIS) and early invasive breast cancer. PMID:20663721
Gene network disruptions and neurogenesis defects in the adult Ts1Cje mouse model of Down syndrome. PMID:20661276
Rank-rank hypergeometric overlap: identification of statistically significant overlap between gene-expression signatures. PMID:20660011
A systems approach to mapping transcriptional networks controlling surfactant homeostasis. PMID:20659319
Gene expression associations with the growth inhibitory effects of small molecules on live cells: specificity of effects and uniformity of mechanisms. PMID:20657799
Chronic alcohol exposure induced gene expression changes in the zebrafish brain. PMID:20654657
Gene expression in the efferent ducts, epididymis, and vas deferens during embryonic development of the mouse. PMID:20652947
Uncovering packaging features of co-regulated modules based on human protein interaction and transcriptional regulatory networks. PMID:20649980
Copy number and gene expression differences between African American and Caucasian American prostate cancer. PMID:20649978
Association weight matrix for the genetic dissection of puberty in beef cattle. PMID:20643938
Gene expression centroids that link with low intrinsic aerobic exercise capacity and complex disease risk. PMID:20643908
NF-kappaB driven cardioprotective gene programs; Hsp70.3 and cardioprotection after late ischemic preconditioning. PMID:20643136
Integration and visualization of systems biology data in context of the genome. PMID:20642854
Defining TNF-α- and LPS-induced gene signatures in monocytes to unravel the complexity of peripheral blood transcriptomes in health and disease. PMID:20640394
Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling. PMID:20639865
Glycoprotein capture and quantitative phosphoproteomics indicate coordinated regulation of cell migration upon lysophosphatidic acid stimulation. PMID:20639409
Systematic analysis of a novel human renal glomerulus-enriched gene expression dataset. PMID:20634963
Quantifying the mechanisms of domain gain in animal proteins. PMID:20633280
Gene expression profiling of mouse p53-deficient epidermal carcinoma defines molecular determinants of human cancer malignancy. PMID:20630075
GTC: A web server for integrating systems biology data with web tools and desktop applications. PMID:20626906
Cytokine-induced monocyte characteristics in SLE. PMID:20625490
Ethanol alters the osteogenic differentiation of amniotic fluid-derived stem cells. PMID:20608908
Flies selected for longevity retain a young gene expression profile. PMID:20607427
Exon-level microarray analyses identify alternative splicing programs in breast cancer. PMID:20605923
Developmental microRNA expression profiling of murine embryonic orofacial tissue. PMID:20589883
Human endometrial side population cells exhibit genotypic, phenotypic and functional features of somatic stem cells. PMID:20585575
Microarray analysis of a salamander hopeful monster reveals transcriptional signatures of paedomorphic brain development. PMID:20584293
Expectations, validity, and reality in gene expression profiling. PMID:20579843
Characterization of the equine skeletal muscle transcriptome identifies novel functional responses to exercise training. PMID:20573200
Global transcriptional response to carbonic anhydrase IX deficiency in the mouse stomach. PMID:20573196
A mouse embryonic stem cell bank for inducible overexpression of human chromosome 21 genes. PMID:20569505
Global gene expression profiling of Yersinia pestis replicating inside macrophages reveals the roles of a putative stress-induced operon in regulating type III secretion and intracellular cell division. PMID:20566693
PCA2GO: a new multivariate statistics based method to identify highly expressed GO-Terms. PMID:20565932
Impact of methoxyacetic acid on mouse Leydig cell gene expression. PMID:20565877
Microarray analysis of cutaneous squamous cell carcinomas reveals enhanced expression of epidermal differentiation complex genes. PMID:20564339
Identification of novel epithelial ovarian cancer biomarkers by cross-laboratory microarray analysis. PMID:20556581
Neuronal microRNA deregulation in response to Alzheimer's disease amyloid-beta. PMID:20552018
Cdx2 regulates endo-lysosomal function and epithelial cell polarity. PMID:20551175
A gene network switch enhances the oxidative capacity of ovine skeletal muscle during late fetal development. PMID:20546621
Acetaminophen modulates the transcriptional response to recombinant interferon-beta. PMID:20544007
A systems-based approach to investigate dose- and time-dependent methylmercury-induced gene expression response in C57BL/6 mouse embryos undergoing neurulation. PMID:20540155
Involvement of mast cells in eosinophilic esophagitis. PMID:20538331
Transcription profiling provides insights into gene pathways involved in horn and scurs development in cattle. PMID:20537189
Integrative epigenomic and genomic analysis of malignant pheochromocytoma. PMID:20534969
Foxa1 and Foxa2 maintain the metabolic and secretory features of the mature beta-cell. PMID:20534694
Transcriptional regulation of gene expression clusters in motor neurons following spinal cord injury. PMID:20534130
AFP computational secreted network construction and analysis between human hepatocellular carcinoma (HCC) and no-tumor hepatitis/cirrhotic liver tissues. PMID:20532728
Next-generation genomics: an integrative approach. PMID:20531367
The effects of aging vs. α7 nAChR subunit deficiency on the mouse brain transcriptome: aging beats the deficiency. PMID:20526689
UFFizi: a generic platform for ranking informative features. PMID:20525252
Quantitative expression profiling in formalin-fixed paraffin-embedded samples by affymetrix microarrays. PMID:20522636
Atoh1 inhibits neuronal differentiation and collaborates with Gli1 to generate medulloblastoma-initiating cells. PMID:20516124
Transcriptomic analysis of dystrophin RNAi knockdown reveals a central role for dystrophin in muscle differentiation and contractile apparatus organization. PMID:20515474
Bayesian integrated modeling of expression data: a case study on RhoG. PMID:20515463
Quantitative proteome analysis of pluripotent cells by iTRAQ mass tagging reveals post-transcriptional regulation of proteins required for ES cell self-renewal. PMID:20513800
Bioinformatic identification and characterization of human endothelial cell-restricted genes. PMID:20509943
A data integration approach to mapping OCT4 gene regulatory networks operative in embryonic stem cells and embryonal carcinoma cells. PMID:20505756
Benzo(a)pyrene induces similar gene expression changes in testis of DNA repair proficient and deficient mice. PMID:20504355
Functional and gene network analyses of transcriptional signatures characterizing pre-weaned bovine mammary parenchyma or fat pad uncovered novel inter-tissue signaling networks during development. PMID:20504330
Co-ordinated gene expression in the liver and spleen during Schistosoma japonicum infection regulates cell migration. PMID:20502518
Parallel genetic and proteomic screens identify Msps as a CLASP-Abl pathway interactor in Drosophila. PMID:20498300
Large-scale analysis of DNA methylation in chronic lymphocytic leukemia. PMID:20495622
Functional analysis and identification of cis-regulatory elements of human chromosome 21 gene promoters. PMID:20494980
Network analysis of EtOH-related candidate genes. PMID:20491071
Strong synaptic transmission impact by copy number variations in schizophrenia. PMID:20489179
Novel multi-nucleotide polymorphisms in the human genome characterized by whole genome and exome sequencing. PMID:20488869
ToppCluster: a multiple gene list feature analyzer for comparative enrichment clustering and network-based dissection of biological systems. PMID:20484371
Genome-wide interrogation of hepatic FXR reveals an asymmetric IR-1 motif and synergy with LRH-1. PMID:20483916
A new strategy to identify and annotate human RPE-specific gene expression. PMID:20479888
Noninvasive diagnosis of intraamniotic infection: proteomic biomarkers in vaginal fluid. PMID:20478552
PhenoFam-gene set enrichment analysis through protein structural information. PMID:20478033
Tasquinimod (ABR-215050), a quinoline-3-carboxamide anti-angiogenic agent, modulates the expression of thrombospondin-1 in human prostate tumors. PMID:20470445
Distinct roles for miR-1 and miR-133a in the proliferation and differentiation of rhabdomyosarcoma cells. PMID:20466878
Characterization of the Human Cervical Mucous Proteome. PMID:20461121
Hedgehog pathway-regulated gene networks in cerebellum development and tumorigenesis. PMID:20460306
Evolution of alternative splicing in primate brain transcriptomes. PMID:20460271
Systems genetics analysis of body weight and energy metabolism traits in Drosophila melanogaster. PMID:20459830
A comparative genome analysis of gene expression reveals different regulatory mechanisms between mouse and human embryo pre-implantation development. PMID:20459759
Transcriptional responses in the adaptation to ischaemia-reperfusion injury: a study of the effect of ischaemic preconditioning in total knee arthroplasty patients. PMID:20459731
GOAL: a software tool for assessing biological significance of genes groups. PMID:20459620
MSEA: a web-based tool to identify biologically meaningful patterns in quantitative metabolomic data. PMID:20457745
Distinct epigenomic landscapes of pluripotent and lineage-committed human cells. PMID:20452322
Nexus between epidermolysis bullosa and transcriptional regulation by thyroid hormone in epidermal keratinocytes. PMID:20443817
Global analysis of the rat and human platelet proteome - the molecular blueprint for illustrating multi-functional platelets and cross-species function evolution. PMID:20443191
Epigenetic and immune function profiles associated with posttraumatic stress disorder. PMID:20439746
Deciphering the mesodermal potency of porcine skin-derived progenitors (SKP) by microarray analysis. PMID:20436954
agriGO: a GO analysis toolkit for the agricultural community. PMID:20435677
Genome-wide assessment of differential roles for p300 and CBP in transcription regulation. PMID:20435671
Meta-analysis of archived DNA microarrays identifies genes regulated by hypoxia and involved in a metastatic phenotype in cancer cells. PMID:20433688
The genome sequence of the spontaneously hypertensive rat: Analysis and functional significance. PMID:20430781
Aging-related gene expression in hippocampus proper compared with dentate gyrus is selectively associated with metabolic syndrome variables in rhesus monkeys. PMID:20427664
Structural similarity-based predictions of protein interactions between HIV-1 and Homo sapiens. PMID:20426868
Analysis of gene expression in prostate cancer epithelial and interstitial stromal cells using laser capture microdissection. PMID:20426842
Developmental regulation and individual differences of neuronal H3K4me3 epigenomes in the prefrontal cortex. PMID:20421462
PHF8 targets histone methylation and RNA polymerase II to activate transcription. PMID:20421419
Estrogen-related receptor gamma is a key regulator of muscle mitochondrial activity and oxidative capacity. PMID:20418374
Transcriptomic analysis of patients with tetralogy of Fallot reveals the effect of chronic hypoxia on myocardial gene expression. PMID:20416888
Distinct gene expression profiles characterize cellular responses to palmitate and oleate. PMID:20410017
Autoantibodies against the exocrine pancreas in autoimmune pancreatitis: gene and protein expression profiling and immunoassays identify pancreatic enzymes as a major target of the inflammatory process. PMID:20407433
From raw materials to validated system: the construction of a genomic library and microarray to interpret systemic perturbations in Northern bobwhite. PMID:20406850
A common neuronal response to alphaherpesvirus infection. PMID:20401540
Parkinson disease-associated DJ-1 is required for the expression of the glial cell line-derived neurotrophic factor receptor RET in human neuroblastoma cells. PMID:20395301
Deficiency in the 15-kDa selenoprotein inhibits tumorigenicity and metastasis of colon cancer cells. PMID:20388823
A study of the influence of sex on genome wide methylation. PMID:20386599
Dissecting the unique role of the retinoblastoma tumor suppressor during cellular senescence. PMID:20385362
A two-tiered compensatory response to loss of DNA repair modulates aging and stress response pathways. PMID:20382984
Identification of copy number variations and common deletion polymorphisms in cattle. PMID:20377913
Whole transcriptome analysis of the hippocampus: toward a molecular portrait of epileptogenesis. PMID:20377889
A functional role of RB-dependent pathway in the control of quiescence in adult epidermal stem cells revealed by genomic profiling. PMID:20376578
Identification of methylmercury tolerance gene candidates in Drosophila. PMID:20375079
Phenotypic covariance of longevity, immunity and stress resistance in the caenorhabditis nematodes. PMID:20369008
Dynamic O-GlcNAc cycling at promoters of Caenorhabditis elegans genes regulating longevity, stress, and immunity. PMID:20368426
An introduction to effective use of enrichment analysis software. PMID:20368141
An expanded Oct4 interaction network: implications for stem cell biology, development, and disease. PMID:20362542
Efficient derivation of functional floor plate tissue from human embryonic stem cells. PMID:20362538
Transcriptome analysis and molecular signature of human retinal pigment epithelium. PMID:20360305
O Labeling for a Quantitative Proteomic Analysis of Glycoproteins in Hepatocellular Carcinoma. PMID:20357908
Pro-inflammatory CD11c+CD206+ adipose tissue macrophages are associated with insulin resistance in human obesity. PMID:20357360
Mutations in CHMP2B in lower motor neuron predominant amyotrophic lateral sclerosis (ALS). PMID:20352044
EPS8 upregulates FOXM1 expression, enhancing cell growth and motility. PMID:20351091
Estrogen receptor alpha controls a gene network in luminal-like breast cancer cells comprising multiple transcription factors and microRNAs. PMID:20348243
Downregulation of genes with a function in axon outgrowth and synapse formation in motor neurones of the VEGFdelta/delta mouse model of amyotrophic lateral sclerosis. PMID:20346106
Dissecting interferon-induced transcriptional programs in human peripheral blood cells. PMID:20339534
Differential expression of lipid and carbohydrate metabolism genes in upper airway versus diaphragm muscle. PMID:20337195
Chromatin signature of embryonic pluripotency is established during genome activation. PMID:20336069
Reciprocal regulation of metabolic and signaling pathways. PMID:20334672
Validation of rearrangement break points identified by paired-end sequencing in natural populations of Drosophila melanogaster. PMID:20333226
Off-pump coronary artery bypass surgery is associated with fewer gene expression changes in the human myocardium in comparison with on-pump surgery. PMID:20332183
Porphyromonas gingivalis infection-induced tissue and bone transcriptional profiles. PMID:20331794
Transient peripheral immune response and central nervous system leaky compartmentalization in a viral model for multiple sclerosis. PMID:20331618
The Arf tumor suppressor protein inhibits Miz1 to suppress cell adhesion and induce apoptosis. PMID:20308430
Activation of aortic endothelial cells by oxidized phospholipids: a phosphoproteomic analysis. PMID:20307106
Cardiac deletion of Smyd2 is dispensable for mouse heart development. PMID:20305823
Identification of JAK-STAT pathways as important for the anti-inflammatory activity of a Hypericum perforatum fraction and bioactive constituents in RAW 264.7 mouse macrophages. PMID:20303133
Deciphering normal blood gene expression variation--The NOWAC postgenome study. PMID:20300640
Brain transcriptomic analysis in paper wasps identifies genes associated with behaviour across social insect lineages. PMID:20236980
MFSD2A is a novel lung tumor suppressor gene modulating cell cycle and matrix attachment. PMID:20236515
Akt regulates the expression of MafK, synaptotagmin I, and syntenin-1, which play roles in neuronal function. PMID:20233453
Functional analysis of the Cdk7.cyclin H.Mat1 complex in mouse embryonic stem cells and embryos. PMID:20231280
A comparison of whole genome gene expression profiles of HepaRG cells and HepG2 cells to primary human hepatocytes and human liver tissues. PMID:20228232
Restriction of receptor movement alters cellular response: physical force sensing by EphA2. PMID:20223987
Proteomic analysis of brush-border membrane vesicles isolated from purified proximal convoluted tubules. PMID:20219825
Trinucleotide repeats in human genome and exome. PMID:20215431
Coordinate interaction between IL-13 and epithelial differentiation cluster genes in eosinophilic esophagitis. PMID:20208004
Mural granulosa cell gene expression associated with oocyte developmental competence. PMID:20205929
Proteomic analysis of prolactinoma cells by immuno-laser capture microdissection combined with online two-dimensional nano-scale liquid chromatography/mass spectrometry. PMID:20205839
Identification of 5 novel genes methylated in breast and other epithelial cancers. PMID:20205715
AutoSOME: a clustering method for identifying gene expression modules without prior knowledge of cluster number. PMID:20202218
A systems biology approach to understanding atherosclerosis. PMID:20201031
Regulation of fibroblast growth factor-2 by an endogenous antisense RNA and by argonaute-2. PMID:20197313
Distribution of candidate genes for experimentally induced arthritis in rats. PMID:20196835
Genome-wide mRNA expression correlates of viral control in CD4+ T-cells from HIV-1-infected individuals. PMID:20195503
miR-125b-2 is a potential oncomiR on human chromosome 21 in megakaryoblastic leukemia. PMID:20194440
Conditional deletion of Abca3 in alveolar type II cells alters surfactant homeostasis in newborn and adult mice. PMID:20190032
Identification of functional modules that correlate with phenotypic difference: the influence of network topology. PMID:20187943
A genome-wide screen identifies frequently methylated genes in haematological and epithelial cancers. PMID:20184741
Differential gene expression in adipose stem cells cultured in allogeneic human serum versus fetal bovine serum. PMID:20184435
Interactome analysis of longitudinal pharyngeal infection of cynomolgus macaques by group A Streptococcus. PMID:20179180
MGMT modulates glioblastoma angiogenesis and response to the tyrosine kinase inhibitor sunitinib. PMID:20179017
Pediatric primary central nervous system germ cell tumors of different prognosis groups show characteristic miRNome traits and chromosome copy number variations. PMID:20178649
Examination of transcriptional networks reveals an important role for TCFAP2C, SMARCA4, and EOMES in trophoblast stem cell maintenance. PMID:20176728
Expression profiling of mouse embryonic fibroblasts with a deletion in the helicase domain of the Werner Syndrome gene homologue treated with hydrogen peroxide. PMID:20175907
In situ trans ligands of CD22 identified by glycan-protein photocross-linking-enabled proteomics. PMID:20172905
A statistical framework for differential network analysis from microarray data. PMID:20170493
A double-layered mixture model for the joint analysis of DNA copy number and gene expression data. PMID:20170400
Automated network analysis identifies core pathways in glioblastoma. PMID:20169195
In vitro fertilization and embryo culture strongly impact the placental transcriptome in the mouse model. PMID:20169163
Site-specific phosphorylation dynamics of the nuclear proteome during the DNA damage response. PMID:20164059
Temporal ChIP-on-Chip of RNA-Polymerase-II to detect novel gene activation events during photoreceptor maturation. PMID:20161818
Individual variation in pheromone response correlates with reproductive traits and brain gene expression in worker honey bees. PMID:20161742
Genomic approaches in the identification of hypoxia biomarkers in model fish species. PMID:20161383
The Prion Disease Database: a comprehensive transcriptome resource for systems biology research in prion diseases. PMID:20157484
Gene expression microarray analysis of early oxygen-induced retinopathy in the rat. PMID:20157446
Differential gene expression in the developing human macula: microarray analysis using rare tissue samples. PMID:20157359
Cellular processes of v-Src transformation revealed by gene profiling of primary cells--implications for human cancer. PMID:20152043
Lists2Networks: integrated analysis of gene/protein lists. PMID:20152038
In vivo actin cross-linking induced by Vibrio cholerae type VI secretion system is associated with intestinal inflammation. PMID:20150509
Regulation of human skin pigmentation in situ by repetitive UV exposure: molecular characterization of responses to UVA and/or UVB. PMID:20147966
MicroRNA-dependent regulation of DNA methyltransferase-1 and tumor suppressor gene expression by interleukin-6 in human malignant cholangiocytes. PMID:20146264
Urinary-type plasminogen activator receptor/alpha 3 beta 1 integrin signaling, altered gene expression, and oral tumor progression. PMID:20145038
Genome-wide analysis of mRNA targets for Caenorhabditis elegans FBF, a conserved stem cell regulator. PMID:20142496
Gene expression profiling and network analysis reveals lipid and steroid metabolism to be the most favored by TNFalpha in HepG2 cells. PMID:20140224
Lack of nAChR activity depresses cochlear maturation and up-regulates GABA system components: temporal profiling of gene expression in alpha9 null mice. PMID:20140217
Ontology engineering. PMID:20139945
Role of microRNA-23b in flow-regulation of Rb phosphorylation and endothelial cell growth. PMID:20133741
Using molecular classification to predict gains in maximal aerobic capacity following endurance exercise training in humans. PMID:20133430
Constitutive activation of smoothened leads to female infertility and altered uterine differentiation in the mouse. PMID:20130264
Deep SAGE analysis of the Caenorhabditis elegans transcriptome. PMID:20129939
Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1. PMID:20129251
Analysis of whole genome biomarker expression in blood and brain. PMID:20127885
Pathway analysis of dilated cardiomyopathy using global proteomic profiling and enrichment maps. PMID:20127684
U87MG decoded: the genomic sequence of a cytogenetically aberrant human cancer cell line. PMID:20126413
Quantitative proteomic analysis of formalin-fixed and paraffin-embedded nasopharyngeal carcinoma using iTRAQ labeling, two-dimensional liquid chromatography, and tandem mass spectrometry. PMID:20124091
A map of open chromatin in human pancreatic islets. PMID:20118932
Genome-wide analysis of binding sites and direct target genes of the orphan nuclear receptor NR2F1/COUP-TFI. PMID:20111703
A critical role for ceramide synthase 2 in liver homeostasis: II. insights into molecular changes leading to hepatopathy. PMID:20110366
Relationship between operon preference and functional properties of persistent genes in bacterial genomes. PMID:20109203
Immunobiological characterization of cancer stem cells isolated from glioblastoma patients. PMID:20103663
Novel candidate cancer genes identified by a large-scale cross-species comparative oncogenomics approach. PMID:20103622
Modeling complex genetic and environmental influences on comorbid bipolar disorder with tobacco use disorder. PMID:20102619
3'-end sequencing for expression quantification (3SEQ) from archival tumor samples. PMID:20098735
Proteins That Underlie Neoplastic Progression of Ulcerative Colitis. PMID:20098637
Translation efficiency in humans: tissue specificity, global optimization and differences between developmental stages. PMID:20097653
Genome-wide tissue-specific farnesoid X receptor binding in mouse liver and intestine. PMID:20091679
Altered gene expression and DNA damage in peripheral blood cells from Friedreich's ataxia patients: cellular model of pathology. PMID:20090835
Molecular basis for hair loss in mice carrying a novel nonsense mutation (Hrrh-R ) in the hairless gene (Hr). PMID:20080498
Molecular signatures of maturing dendritic cells: implications for testing the quality of dendritic cell therapies. PMID:20078880
Gene expression profiling of peripheral blood cells for early detection of breast cancer. PMID:20078854
Luteolin triggers global changes in the microglial transcriptome leading to a unique anti-inflammatory and neuroprotective phenotype. PMID:20074346
Direct transfer of alpha-synuclein from neuron to astroglia causes inflammatory responses in synucleinopathies. PMID:20071342
Integrated pathways for neutrophil recruitment and inflammation in leprosy. PMID:20070238
Comparison of clastogen-induced gene expression profiles in wild-type and DNA repair-deficient Rad54/Rad54B cells. PMID:20067618
GSMA: Gene Set Matrix Analysis, An Automated Method for Rapid Hypothesis Testing of Gene Expression Data. PMID:20066124
A reconfigured pattern of MLL occupancy within mitotic chromatin promotes rapid transcriptional reactivation following mitotic exit. PMID:20064463
Spatial mapping of thymic stromal microenvironments reveals unique features influencing T lymphoid differentiation. PMID:20064453
Jumonji modulates polycomb activity and self-renewal versus differentiation of stem cells. PMID:20064376
Comparative transcriptomic analysis of follicle-enclosed oocyte maturational and developmental competence acquisition in two non-mammalian vertebrates. PMID:20059772
An EGFR autocrine loop encodes a slow-reacting but dominant mode of mechanotransduction in a polarized epithelium. PMID:20056713
Ablation of Indian hedgehog in the murine uterus results in decreased cell cycle progression, aberrant epidermal growth factor signaling, and increased estrogen signaling. PMID:20056671
Identification of condition-specific regulatory modules through multi-level motif and mRNA expression analysis. PMID:20054984
Integrated approach for the identification of human hepatocyte nuclear factor 4alpha target genes using protein binding microarrays. PMID:20054869
Cyclic stretch magnitude and duration affect rat alveolar epithelial gene expression. PMID:20054150
Nuclear translocation of beta-actin is involved in transcriptional regulation during macrophage differentiation of HL-60 cells. PMID:20053683
Many sequence-specific chromatin modifying protein-binding motifs show strong positional preferences for potential regulatory regions in the Saccharomyces cerevisiae genome. PMID:20047965
Novel early response genes in osteoblasts exposed to dynamic fluid flow. PMID:20047941
Differential gene regulation by the human and mouse aryl hydrocarbon receptor. PMID:20044593
A novel approach to analyze gene expression data demonstrates that the DeltaF508 mutation in CFTR downregulates the antigen presentation pathway. PMID:20044437
Transcriptional adaptations following exercise in thoroughbred horse skeletal muscle highlights molecular mechanisms that lead to muscle hypertrophy. PMID:20042072
Cell sorting-assisted microarray profiling of host cell response to Cryptosporidium parvum infection. PMID:20038534
Single-cell expression profiling of dopaminergic neurons combined with association analysis identifies pyridoxal kinase as Parkinson's disease gene. PMID:20035503
REDD1 is a major target of testosterone action in preventing dexamethasone-induced muscle loss. PMID:20032058
Of mice and men: comparative proteomics of bronchoalveolar fluid. PMID:20032019
Cardiac resynchronization therapy corrects dyssynchrony-induced regional gene expression changes on a genomic level. PMID:20031609
Time-warped comparison of gene expression in adaptive and maladaptive cardiac hypertrophy. PMID:20031575
Sex and age dimorphism of myocardial gene expression in nonischemic human heart failure. PMID:20031553
Targets of the Tal1 transcription factor in erythrocytes: E2 ubiquitin conjugase regulation by Tal1. PMID:20028976
The Drosophila nuclear receptors DHR3 and betaFTZ-F1 control overlapping developmental responses in late embryos. PMID:20023167
An epigenetic signature in peripheral blood predicts active ovarian cancer. PMID:20019873
Aging mice show a decreasing correlation of gene expression within genetic modules. PMID:20019809
A taxonomy of epithelial human cancer and their metastases. PMID:20017941
ZBED6, a novel transcription factor derived from a domesticated DNA transposon regulates IGF2 expression and muscle growth. PMID:20016685
Genomewide association analysis of respiratory syncytial virus infection in mice. PMID:20015999
Increased epithelial stem cell traits in advanced endometrial endometrioid carcinoma. PMID:20015385
Global transcriptional response after exposure of fission yeast cells to ultraviolet light. PMID:20015352
An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data. PMID:20011106
ConceptGen: a gene set enrichment and gene set relation mapping tool. PMID:20007254
Proteome bioprofiles distinguish between M1 priming and activation states in human macrophages. PMID:20007246
PCB153-elicited hepatic responses in the immature, ovariectomized C57BL/6 mice: comparative toxicogenomic effects of dioxin and non-dioxin-like ligands. PMID:20005886
Dissecting the dynamics of dysregulation of cellular processes in mouse mammary gland tumor. PMID:20003387
Deciphering the transcriptional circuitry of microRNA genes expressed during human monocytic differentiation. PMID:20003307
The effects of mating and instrumental insemination on queen honey bee flight behaviour and gene expression. PMID:20002808
Three-dimensional culture alters primary cardiac cell phenotype. PMID:20001738
Multi-organ expression profiling uncovers a gene module in coronary artery disease involving transendothelial migration of leukocytes and LIM domain binding 2: the Stockholm Atherosclerosis Gene Expression (STAGE) study. PMID:19997623
Global MYCN transcription factor binding analysis in neuroblastoma reveals association with distinct E-box motifs and regions of DNA hypermethylation. PMID:19997598
ChIP-Seq of transcription factors predicts absolute and differential gene expression in embryonic stem cells. PMID:19995984
Upstream transcription factor 1 influences plasma lipid and metabolic traits in mice. PMID:19995791
Integrated biochemical and computational approach identifies BCL6 direct target genes controlling multiple pathways in normal germinal center B cells. PMID:19965633
Global genomic analysis reveals rapid control of a robust innate response in SIV-infected sooty mangabeys. PMID:19959874
Gender differences in a Drosophila transcriptomic model of chronic pentylenetetrazole induced behavioral deficit. PMID:19956579
Shotgun proteomics analysis of hibernating arctic ground squirrels. PMID:19955082
RNA profiles of rat olfactory epithelia: individual and age related variations. PMID:19954510
Global metabolic consequences of the chromogranin A-null model of hypertension: transcriptomic detection, pathway identification, and experimental verification. PMID:19952279
Expression profile of rat hippocampal neurons treated with the neuroprotective compound 2,4-dinitrophenol: up-regulation of cAMP signaling genes. PMID:19949915
Effect of mood stabilizers on gene expression in lymphoblastoid cells. PMID:19949822
A comprehensive proteomics and transcriptomics analysis of Bacillus subtilis salt stress adaptation. PMID:19948795
Blocking the metabolism of starch breakdown products in Arabidopsis leaves triggers chloroplast degradation. PMID:19946617
Gene expression profiling during early acute febrile stage of dengue infection can predict the disease outcome. PMID:19936257
Exon array analysis of head and neck cancers identifies a hypoxia related splice variant of LAMA3 associated with a poor prognosis. PMID:19936049
Selenoprotein T deficiency alters cell adhesion and elevates selenoprotein W expression in murine fibroblast cells. PMID:19935881
Environmentally-acquired bacteria influence microbial diversity and natural innate immune responses at gut surfaces. PMID:19930542
Autoantibody profiling to identify biomarkers of key pathogenic pathways in mucinous ovarian cancer. PMID:19926475
The use of neuroproteomics in drug abuse research. PMID:19926406
Correlating global gene regulation to angiogenesis in the developing chick extra-embryonic vascular system. PMID:19924294
CTCF binding site classes exhibit distinct evolutionary, genomic, epigenomic and transcriptomic features. PMID:19922652
Discovery and annotation of functional chromatin signatures in the human genome. PMID:19918365
Alternative splicing and transcriptome profiling of experimental autoimmune encephalomyelitis using genome-wide exon arrays. PMID:19915720
Illumina WG-6 BeadChip strips should be normalized separately. PMID:19903361
Effects of age on the synergistic interactions between lipopolysaccharide and mechanical ventilation in mice. PMID:19901347
SAFB1 mediates repression of immune regulators and apoptotic genes in breast cancer cells. PMID:19901029
Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach. PMID:19891781
The proteomic analysis of human neonatal umbilical cord serum by mass spectrometry. PMID:19890362
Dynamic patterning at the pylorus: formation of an epithelial intestine-stomach boundary in late fetal life. PMID:19877272
Genomic profiling of microRNAs and messenger RNAs reveals hormonal regulation in microRNA expression in human endometrium. PMID:19864316
ArrayMining: a modular web-application for microarray analysis combining ensemble and consensus methods with cross-study normalization. PMID:19863798
Transcriptome analysis of differentiating trypanosomes reveals the existence of multiple post-transcriptional regulons. PMID:19857263
Expulsion of Trichuris muris is associated with increased expression of angiogenin 4 in the gut and increased acidity of mucins within the goblet cell. PMID:19852835
MicroRNA 29b functions in acute myeloid leukemia. PMID:19850741
Massive induction of innate immune response to Candida albicans in the kidney in a murine intravenous challenge model. PMID:19845042
Induction of intestinal Th17 cells by segmented filamentous bacteria. PMID:19836068
Forkhead box M1 transcriptional factor is required for smooth muscle cells during embryonic development of blood vessels and esophagus. PMID:19835856
Expression quantitative trait loci are highly sensitive to cellular differentiation state. PMID:19834560
The stanley neuropathology consortium integrative database: a novel, web-based tool for exploring neuropathological markers in psychiatric disorders and the biological processes associated with abnormalities of those markers. PMID:19829293
The epithelial splicing factors ESRP1 and ESRP2 positively and negatively regulate diverse types of alternative splicing events. PMID:19829082
Retinoblastoma protein plays multiple essential roles in the terminal differentiation of Sertoli cells. PMID:19819985
Effect of DLK1 and RTL1 but not MEG3 or MEG8 on muscle gene expression in Callipyge lambs. PMID:19816583
Transcriptomic analysis of human lung development. PMID:19815808
Topological properties of co-occurrence networks in published gene expression signatures. PMID:19812777
Global analysis of transcriptional regulation by poly(ADP-ribose) polymerase-1 and poly(ADP-ribose) glycohydrolase in MCF-7 human breast cancer cells. PMID:19812418
An integrated systems analysis implicates EGR1 downregulation in simian immunodeficiency virus encephalitis-induced neural dysfunction. PMID:19812322
Comparing gene annotation enrichment tools for functional modeling of agricultural microarray data. PMID:19811693
Site-specific impacts on gene expression and behavior in fathead minnows (Pimephales promelas) exposed in situ to streams adjacent to sewage treatment plants. PMID:19811676
Generation of Gene Ontology benchmark datasets with various types of positive signal. PMID:19811632
Triplet repeat length bias and variation in the human transcriptome. PMID:19805156
Early over expression of messenger RNA for multiple genes, including insulin, in the Pancreatic Lymph Nodes of NOD mice is associated with Islet Autoimmunity. PMID:19799787
Molecular networks involved in mouse cerebral corticogenesis and spatio-temporal regulation of Sox4 and Sox11 novel antisense transcripts revealed by transcriptome profiling. PMID:19799774
Network visualization and analysis of gene expression data using BioLayout Express(3D). PMID:19798086
Coexpression network based on natural variation in human gene expression reveals gene interactions and functions. PMID:19797678
DNA methyltransferase 1 is essential for and uniquely regulates hematopoietic stem and progenitor cells. PMID:19796624
Coordinated activation of the secretory pathway during notochord formation in the Xenopus embryo. PMID:19793890
Overlapping promoter targeting by Elk-1 and other divergent ETS-domain transcription factor family members. PMID:19789270
Transcriptional profiling of rats subjected to gestational undernourishment: implications for the developmental variations in metabolic traits. PMID:19787071
Global transcriptional response to Hfe deficiency and dietary iron overload in mouse liver and duodenum. PMID:19787063
Integration of heterogeneous expression data sets extends the role of the retinol pathway in diabetes and insulin resistance. PMID:19786482
Selective control of gene expression by CDK9 in human cells. PMID:19780058
Conserved expression patterns predict microRNA targets. PMID:19779543
Effect of dietary calcium and dairy proteins on the adipose tissue gene expression profile in diet-induced obesity. PMID:19776631
SimCT: a generic tool to visualize ontology-based relationships for biological objects. PMID:19776214
Robust extraction of functional signals from gene set analysis using a generalized threshold free scoring function. PMID:19775443
Molecular distinctions between stasis and telomere attrition senescence barriers shown by long-term culture of normal human mammary epithelial cells. PMID:19773443
Induction of cytokine gene expression in human thyroid epithelial cells irradiated with HZE particles (iron ions). PMID:19772464
A genome-wide RNAi screen for modifiers of the circadian clock in human cells. PMID:19765810
Caenorhabditis elegans PI3K mutants reveal novel genes underlying exceptional stress resistance and lifespan. PMID:19764929
Induction of epithelial mesenchimal transition and vasculogenesis in the lenses of Dbl oncogene transgenic mice. PMID:19759912
Effects of typical and atypical antipsychotic drugs on gene expression profiles in the liver of schizophrenia subjects. PMID:19758435
C. elegans dysferlin homolog fer-1 is expressed in muscle, and fer-1 mutations initiate altered gene expression of muscle enriched genes. PMID:19755517
Scalp fibroblasts have a shared expression profile in monogenic craniosynostosis. PMID:19755431
Transcriptional profiling differences for articular cartilage and repair tissue in equine joint surface lesions. PMID:19751507
Gene expression profiling of human alveolar macrophages infected by B. anthracis spores demonstrates TNF-alpha and NF-kappab are key components of the innate immune response to the pathogen. PMID:19744333
HIV-1 infection of macrophages is dependent on evasion of innate immune cellular activation. PMID:19741482
Systemic delivery of synthetic microRNA-16 inhibits the growth of metastatic prostate tumors via downregulation of multiple cell-cycle genes. PMID:19738602
Lipoproteomics: using mass spectrometry-based proteomics to explore the assembly, structure, and function of lipoproteins. PMID:19738003
Genetical toxicogenomics in Drosophila identifies master-modulatory loci that are regulated by developmental exposure to lead. PMID:19737576
Gene expression down-regulation in CD90+ prostate tumor-associated stromal cells involves potential organ-specific genes. PMID:19737398
The histone variant macroH2A is an epigenetic regulator of key developmental genes. PMID:19734898
Genephony: a knowledge management tool for genome-wide research. PMID:19728881
Enhanced expression of SOS1 is detected in prostate cancer epithelial cells from African-American men. PMID:19724911
Expression profiling identifies genes involved in emphysema severity. PMID:19723343
Molecular Signature of HPV-Induced Carcinogenesis: pRb, p53 and Gene Expression Profiling. PMID:19721808
Schizophrenia is associated with an increase in cortical microRNA biogenesis. PMID:19721432
NF-E2-related factor 2 regulates the stress response to UVA-1-oxidized phospholipids in skin cells. PMID:19720622
Weighted gene co-expression network analysis of the peripheral blood from Amyotrophic Lateral Sclerosis patients. PMID:19712483
Global H4 acetylation analysis by ChIP-chip in systemic lupus erythematosus monocytes. PMID:19710693
Rhinovirus-induced modulation of gene expression in bronchial epithelial cells from subjects with asthma. PMID:19710636
Genetic dependence of central corneal thickness among inbred strains of mice. PMID:19710407
Transmigration across activated endothelium induces transcriptional changes, inhibits apoptosis, and decreases antimicrobial protein expression in human monocytes. PMID:19706840
Stable isotope labeling and label-free proteomics of Drosophila parkin null mutants. PMID:19705877
Transcriptional effects of CRP* expression in Escherichia coli. PMID:19703305
Early dysregulation of cell adhesion and extracellular matrix pathways in breast cancer progression. PMID:19700746
The Drosophila foraging gene mediates adult plasticity and gene-environment interactions in behaviour, metabolites, and gene expression in response to food deprivation. PMID:19696884
Cytokine array comparisons of plasma from cycling fertile women on cycle day 5 and ovulation. PMID:19694641
Massively parallel resequencing of the isogenic Drosophila melanogaster strain w(1118); iso-2; iso-3 identifies hotspots for mutations in sensory perception genes. PMID:19690466
Integrating microRNA and mRNA expression profiles of neuronal progenitors to identify regulatory networks underlying the onset of cortical neurogenesis. PMID:19689821
Elucidation of the ELK1 target gene network reveals a role in the coordinate regulation of core components of the gene regulation machinery. PMID:19687146
Characterization of human septic sera induced gene expression modulation in human myocytes. PMID:19684886
Accelerated ovarian aging in the absence of the transcription regulator TAF4B in mice. PMID:19684329
Comparative analysis of AhR-mediated TCDD-elicited gene expression in human liver adult stem cells. PMID:19684285
Genome-wide mRNA expression analysis of hepatic adaptation to high-fat diets reveals switch from an inflammatory to steatotic transcriptional program. PMID:19680557
Chronic dietary exposure to a low-dose mixture of genistein and vinclozolin modifies the reproductive axis, testis transcriptome, and fertility. PMID:19672408
Global brain gene expression analysis links glutamatergic and GABAergic alterations to suicide and major depression. PMID:19668376
Impact of the TCR signal on regulatory T cell homeostasis, function, and trafficking. PMID:19668367
Genome-wide analysis of SREBP-1 binding in mouse liver chromatin reveals a preference for promoter proximal binding to a new motif. PMID:19666523
Combined genome-wide expression profiling and targeted RNA interference in primary mouse macrophages reveals perturbation of transcriptional networks associated with interferon signalling. PMID:19664281
The steady-state transcriptome of the four major life-cycle stages of Trypanosoma cruzi. PMID:19664227
Chronic endoplasmic reticulum stress activates unfolded protein response in arterial endothelium in regions of susceptibility to atherosclerosis. PMID:19661457
Stem cell associated gene expression in glioblastoma multiforme: relationship to survival and the subventricular zone. PMID:19655089
Candidate pathways and genes for prostate cancer: a meta-analysis of gene expression data. PMID:19653896
Identification of a putative network of actin-associated cytoskeletal proteins in glomerular podocytes defined by co-purified mRNAs. PMID:19652713
Increased local expression of coagulation factor X contributes to the fibrotic response in human and murine lung injury. PMID:19652365
Alcohol sensitivity in Drosophila: translational potential of systems genetics. PMID:19652175
The presence of RNA polymerase II, active or stalled, predicts epigenetic fate of promoter CpG islands. PMID:19652013
A genome-wide siRNA screen reveals diverse cellular processes and pathways that mediate genome stability. PMID:19647519
Meiotic behavior of aneuploid chromatin in mouse models of Down syndrome. PMID:19639331
The organization of the transcriptional network in specific neuronal classes. PMID:19638972
Genome-wide strategies for discovering genetic influences on cognition and cognitive disorders: methodological considerations. PMID:19634037
Mining gene functional networks to improve mass-spectrometry-based protein identification. PMID:19633097
Over-expression and localization of a host protein on the membrane of Cryptosporidium parvum infected epithelial cells. PMID:19631240
Detection of differentially expressed genes between Erhualian and Large White placentas on day 75 and 90 of gestation. PMID:19630995
Circadian clock genes contribute to the regulation of hair follicle cycling. PMID:19629164
Oxidative stress and longevity in Caenorhabditis elegans as mediated by SKN-1. PMID:19627265
The preferentially expressed antigen in melanoma (PRAME) inhibits myeloid differentiation in normal hematopoietic and leukemic progenitor cells. PMID:19625708
Acute molecular response of mouse hindlimb muscles to chronic stimulation. PMID:19625612
Identification of pediatric septic shock subclasses based on genome-wide expression profiling. PMID:19624809
Widespread cleavage of A-to-I hyperediting substrates. PMID:19622679
Signed weighted gene co-expression network analysis of transcriptional regulation in murine embryonic stem cells. PMID:19619308
Analysis of Rex1 (zfp42) function in embryonic stem cell differentiation. PMID:19618472
High frequency of hotspot mutations in core genes of Escherichia coli due to short-term positive selection. PMID:19617543
Transcriptome profiling reveals TGF-beta signaling involvement in epileptogenesis. PMID:19605630
In silico identification of a core regulatory network of OCT4 in human embryonic stem cells using an integrated approach. PMID:19604364
Plerixafor (AMD3100) and granulocyte colony-stimulating factor (G-CSF) mobilize different CD34+ cell populations based on global gene and microRNA expression signatures. PMID:19602709
Genome wide analysis of human genes transcriptionally and post-transcriptionally regulated by the HTLV-I protein p30. PMID:19602286
Porcine muscle sensory attributes associate with major changes in gene networks involving CAPZB, ANKRD1, and CTBP2. PMID:19597856
Annotating the human genome with Disease Ontology. PMID:19594883
Perturbation of defense pathways by low-dose arsenic exposure in zebrafish embryos. PMID:19590694
Detection of low-abundant novel transcripts in mouse hematopoietic stem cells. PMID:19585147
OHMM: a Hidden Markov Model accurately predicting the occupancy of a transcription factor with a self-overlapping binding motif. PMID:19583839
Gene profiling of human adipose tissue during evoked inflammation in vivo. PMID:19581417
DDEC: Dragon database of genes implicated in esophageal cancer. PMID:19580656
Tracking Differential Gene Expression in MRL/MpJ Versus C57BL/6 Anergic B Cells: Molecular Markers of Autoimmunity. PMID:19578517
Differential gene expression patterns of EBV infected EBNA-3A positive and negative human B lymphocytes. PMID:19578441
Condition-adapted stress and longevity gene regulation by Caenorhabditis elegans SKN-1/Nrf. PMID:19575768
Downregulation of oligodendrocyte transcripts is associated with impaired prefrontal cortex function in rats. PMID:19570651
Pleiotropic effects of negative energy balance in the postpartum dairy cow on splenic gene expression: repercussions for innate and adaptive immunity. PMID:19567785
X-chromosome gene dosage and the risk of diabetes in Turner syndrome. PMID:19567529
Seeking unique and common biological themes in multiple gene lists or datasets: pathway pattern extraction pipeline for pathway-level comparative analysis. PMID:19563622
The thioxotriazole copper(II) complex A0 induces endoplasmic reticulum stress and paraptotic death in human cancer cells. PMID:19561079
Effect of hydroxyurea on the promoter occupancy profiles of tumor suppressor p53 and p73. PMID:19558638
Genome-wide analyses of exonic copy number variants in a family-based study point to novel autism susceptibility genes. PMID:19557195
DNA methylation is widespread and associated with differential gene expression in castes of the honeybee, Apis mellifera. PMID:19556545
Regulation of gene expression by estrogen and testosterone in the proximal mouse reproductive tract. PMID:19553595
Impact of animal strain on gene expression in a rat model of acute cardiac rejection. PMID:19552812
Housekeeping genes in prostate tumorigenesis. PMID:19551858
Next-generation tag sequencing for cancer gene expression profiling. PMID:19541910
Discernment of possible mechanisms of hepatotoxicity via biological processes over-represented by co-expressed genes. PMID:19538742
Comparative prion disease gene expression profiling using the prion disease mimetic, cuprizone. PMID:19535908
Human microRNA target analysis and gene ontology clustering by GOmir, a novel stand-alone application. PMID:19534746
Proteins recruited by SH3 domains of Ruk/CIN85 adaptor identified by LC-MS/MS. PMID:19531213
Dengue virus infection differentially regulates endothelial barrier function over time through type I interferon effects. PMID:19530939
Mutations in many genes affect aggressive behavior in Drosophila melanogaster. PMID:19519879
Integrated analysis of DNA methylation and gene expression reveals specific signaling pathways associated with platinum resistance in ovarian cancer. PMID:19505326
A genome scan for positive selection in thoroughbred horses. PMID:19503617
Detection of transgenerational spermatogenic inheritance of adult male acquired CNS gene expression characteristics using a Drosophila systems model. PMID:19503609
Candidate Agtr2 influenced genes and pathways identified by expression profiling in the developing brain of Agtr2(-/y) mice. PMID:19501643
Gene expression profiling within the spleen of Clostridium perfringens-challenged broilers fed antibiotic-medicated and non-medicated diets. PMID:19500416
Gene and microRNA analysis of neutrophils from patients with polycythemia vera and essential thrombocytosis: down-regulation of micro RNA-1 and -133a. PMID:19497108
The epidermal differentiation-associated Grainyhead gene Get1/Grhl3 also regulates urothelial differentiation. PMID:19494835
Gene expression profiling of lymphoblasts from autistic and nonaffected sib pairs: altered pathways in neuronal development and steroid biosynthesis. PMID:19492049
The role of Ifng in alterations in liver gene expression in a mouse model of fulminant autoimmune hepatitis. PMID:19490417
Transcriptional regulation of metabolism associated with the increased desiccation resistance of the cactophilic Drosophila mojavensis. PMID:19487561
Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes. PMID:19487240
Profile of estrogen-responsive genes in an estrogen-specific mammary gland outgrowth model. PMID:19484750
The constitutive active/androstane receptor facilitates unique phenobarbital-induced expression changes of genes involved in key pathways in precancerous liver and liver tumors. PMID:19482888
Phenotypic expression of maternally inherited deafness is affected by RNA modification and cytoplasmic ribosomal proteins. PMID:19482502
A joint finite mixture model for clustering genes from independent Gaussian and beta distributed data. PMID:19480678
Transcriptome-wide prediction of miRNA targets in human and mouse using FASTH. PMID:19478946
Host cell factors in HIV replication: meta-analysis of genome-wide studies. PMID:19478882
From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations. PMID:19478018
A gene expression signature associated with "K-Ras addiction" reveals regulators of EMT and tumor cell survival. PMID:19477428
Identification of gene co-regulatory modules and associated cis-elements involved in degenerative heart disease. PMID:19476647
Genetic evidence for shared mechanisms of epimorphic regeneration in zebrafish. PMID:19474300
Functional genomic analysis of amniotic fluid cell-free mRNA suggests that oxidative stress is significant in Down syndrome fetuses. PMID:19474297
Immunological profiles of Bos taurus and Bos indicus cattle infested with the cattle tick, Rhipicephalus (Boophilus) microplus. PMID:19474263
Identification of astrocyte secreted proteins with a combination of shotgun proteomics and bioinformatics. PMID:19469553
Identification of human sperm transcripts as candidate markers of male fertility. PMID:19466390
GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information. PMID:19465387
Gene expression profiles in the PC-3 human prostate cancer cells induced by NKX3.1. PMID:19462257
Data perturbation independent diagnosis and validation of breast cancer subtypes using clustering and patterns. PMID:19458770
Bioinformatics resources for cancer research with an emphasis on gene function and structure prediction tools. PMID:19458756
Public databases and software for the pathway analysis of cancer genomes. PMID:19455256
Identification and characterization of renal cell carcinoma gene markers. PMID:19455236
Prediction of HIV-1 virus-host protein interactions using virus and host sequence motifs. PMID:19450270
Distinct gene-expression profiles characterize mammary tumors developed in transgenic mice expressing constitutively active and C-terminally truncated variants of STAT5. PMID:19450255
Three subclasses of a Drosophila insulator show distinct and cell type-specific genomic distributions. PMID:19443682
HIV-1-infected dendritic cells show 2 phases of gene expression changes, with lysosomal enzyme activity decreased during the second phase. PMID:19436054
Characterization of a naturally occurring breast cancer subset enriched in epithelial-to-mesenchymal transition and stem cell characteristics. PMID:19435916
COFECO: composite function annotation enriched by protein complex data. PMID:19429688
Gene expression profiling predicts a three-gene expression signature of endometrial adenocarcinoma in a rat model. PMID:19426485
Comparison of rat olfactory mucosal responses to carcinogenic and non-carcinogenic chloracetanilides. PMID:19425180
Modulated modularity clustering as an exploratory tool for functional genomic inference. PMID:19424432
The role of miR-206 in the epidermal growth factor (EGF) induced repression of estrogen receptor-alpha (ERalpha) signaling and a luminal phenotype in MCF-7 breast cancer cells. PMID:19423651
Identification of candidate genes for congenital splay leg in piglets by alternative analysis of DNA microarray data. PMID:19421343
Use of serial analysis of gene expression to reveal the specific regulation of gene expression profile in asthmatic rats treated by acupuncture. PMID:19419550
Gene expression profiling for the investigation of soft tissue sarcoma pathogenesis and the identification of diagnostic, prognostic, and predictive biomarkers. PMID:19412622
Effects of lithium chloride on the gene expression profiles in Drosophila heads. PMID:19410610
A molecular function map of Ewing's sarcoma. PMID:19404404
Autism genome-wide copy number variation reveals ubiquitin and neuronal genes. PMID:19404257
Exploring the relationship between polymorphic (TG/CA)n repeats in intron 1 regions and gene expression. PMID:19403458
Distinct patterns of gene and protein expression elicited by organophosphorus pesticides in Caenorhabditis elegans. PMID:19402892
Analysis of differential gene expression in colorectal cancer and stroma using fluorescence-activated cell sorting purification. PMID:19401702
Genomic and proteomic study to survey the mechanism of action of the anti-Parkinson's disease drug, rasagiline compared with selegiline, in the rat midbrain. PMID:19396396
Retinoid-responsive transcriptional changes in epidermal keratinocytes. PMID:19388012
Genome-wide association of hypoxia-inducible factor (HIF)-1alpha and HIF-2alpha DNA binding with expression profiling of hypoxia-inducible transcripts. PMID:19386601
Establishment of intestinal identity and epithelial-mesenchymal signaling by Cdx2. PMID:19386267
Progesterone receptor A-regulated gene expression in mammary organoid cultures. PMID:19383543
The chemokine interleukin-8 and the surface activation protein CD69 are markers for Bcr-Abl activity in chronic myeloid leukemia. PMID:19383348
Functional annotation of the human retinal pigment epithelium transcriptome. PMID:19379482
Dose-dependent transitions in Nrf2-mediated adaptive response and related stress responses to hypochlorous acid in mouse macrophages. PMID:19376150
Comprehensive proteomic analysis of human cervical-vaginal fluid using colposcopy samples. PMID:19374746
Global gene expression in the human fetal testis and ovary. PMID:19369649
A conserved CCCH-type zinc finger protein regulates mRNA nuclear adenylation and export. PMID:19364924
Genetic control of human brain transcript expression in Alzheimer disease. PMID:19361613
Association of survival and disease progression with chromosomal instability: a genomic exploration of colorectal cancer. PMID:19359472
Comparison of proteomic and transcriptomic profiles in the bronchial airway epithelium of current and never smokers. PMID:19357784
Diffuse-type gastric carcinoma: progression, angiogenesis, and transforming growth factor beta signaling. PMID:19351925
Influence of fatty acid diets on gene expression in rat mammary epithelial cells. PMID:19351911
Enrichment constrained time-dependent clustering analysis for finding meaningful temporal transcription modules. PMID:19351618
Differential testicular gene expression in seasonal fertility. PMID:19346449
Primary biliary cirrhosis is associated with altered hepatic microRNA expression. PMID:19345069
Unique patterns of molecular profiling between human prostate cancer LNCaP and PC-3 cells. PMID:19343732
Evaluation of 3 clinical dendritic cell maturation protocols containing lipopolysaccharide and interferon-gamma. PMID:19342965
Thymic OX40 expression discriminates cells undergoing strong responses to selection ligands. PMID:19342632
DNA replication licensing and progenitor numbers are increased by progesterone in normal human breast. PMID:19342456
Mouse models of human AML accurately predict chemotherapy response. PMID:19339691
Targeted bisulfite sequencing reveals changes in DNA methylation associated with nuclear reprogramming. PMID:19330000
Genomic expression profiling across the pediatric systemic inflammatory response syndrome, sepsis, and septic shock spectrum. PMID:19325468
Estrogen receptor beta is required for optimal cAMP production in mouse granulosa cells. PMID:19324971
Transcription and splicing regulation in human umbilical vein endothelial cells under hypoxic stress conditions by exon array. PMID:19320972
Natural genetic variation in transcriptome reflects network structure inferred with major effect mutations: insulin/TOR and associated phenotypes in Drosophila melanogaster. PMID:19317915
MicroRNA and gene expression patterns in the differentiation of human embryonic stem cells. PMID:19309508
Genomic landscape of developing male germ cells. PMID:19306351
Toxicogenomic analysis of susceptibility to inhaled urban particulate matter in mice with chronic lung inflammation. PMID:19284582
Rac1 is a critical mediator of endothelium-derived neurotrophic activity. PMID:19278959
Influence of hyperthyroid conditions on gene expression in extraocular muscles of rats. PMID:19276241
Immune dysregulation in severe influenza. PMID:19276177
Disruption of Dicer1 induces dysregulated fetal gene expression and promotes hepatocarcinogenesis. PMID:19272382
Meta-analysis and gene set enrichment relative to er status reveal elevated activity of MYC and E2F in the "basal" breast cancer subgroup. PMID:19270750
Phenobarbital elicits unique, early changes in the expression of hepatic genes that affect critical pathways in tumor-prone B6C3F1 mice. PMID:19270015
Cellular expression of midkine-a and midkine-b during retinal development and photoreceptor regeneration in zebrafish. PMID:19263476
The osteogenic transcription factor Runx2 regulates components of the fibroblast growth factor/proteoglycan signaling axis in osteoblasts. PMID:19259985
Genomic analyses of musashi1 downstream targets show a strong association with cancer-related processes. PMID:19258308
Rapid evolution of mammalian X-linked testis microRNAs. PMID:19257908
Gene expression profiles of dental follicle cells before and after osteogenic differentiation in vitro. PMID:19252934
Fine ambient particles induce oxidative stress and metal binding genes in human alveolar macrophages. PMID:19251948
Comprehensive proteome analysis of an Apc mouse model uncovers proteins associated with intestinal tumorigenesis. PMID:19240248
Zebrafish miR-1 and miR-133 shape muscle gene expression and regulate sarcomeric actin organization. PMID:19240126
GO Explorer: A gene-ontology tool to aid in the interpretation of shotgun proteomics data. PMID:19239707
Co-regulated transcriptional networks contribute to natural genetic variation in Drosophila sleep. PMID:19234472
Systems genetics of complex traits in Drosophila melanogaster. PMID:19234471
Clustering of gene expression data and end-point measurements by simulated annealing. PMID:19226667
Dysregulated gene expression networks in human acute myelogenous leukemia stem cells. PMID:19218430
Somatic, germline and sex hierarchy regulated gene expression during Drosophila metamorphosis. PMID:19216785
Hippocampal and cognitive aging across the lifespan: a bioenergetic shift precedes and increased cholesterol trafficking parallels memory impairment. PMID:19211887
Identification of discriminating biomarkers for human disease using integrative network biology. PMID:19209693
MitoMiner, an integrated database for the storage and analysis of mitochondrial proteomics data. PMID:19208617
Age-related decrease in proteasome expression contributes to defective nuclear factor-kappaB activation during hepatic ischemia/reperfusion. PMID:19206148
A genome-wide survey of the prevalence and evolutionary forces acting on human nonsense SNPs. PMID:19200524
Identification of genes differentially expressed as result of adenovirus type 5- and adenovirus type 12-transformation. PMID:19200380
FSH and FOXO1 regulate genes in the sterol/steroid and lipid biosynthetic pathways in granulosa cells. PMID:19196834
Understanding Haemophilus parasuis infection in porcine spleen through a transcriptomics approach. PMID:19196461
GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists. PMID:19192299
Overexpressed vs mutated Kras in murine fibroblasts: a molecular phenotyping study. PMID:19190631
Meta-analysis of age-related gene expression profiles identifies common signatures of aging. PMID:19189975
The macrophage colony-stimulating factor 1 response signature in breast carcinoma. PMID:19188147
A Candida albicans early stage biofilm detachment event in rich medium. PMID:19187560
Machine learning approach identifies new pathways associated with demyelination in a viral model of multiple sclerosis. PMID:19183246
Large-scale detection of ubiquitination substrates using cell extracts and protein microarrays. PMID:19181856
Genome-wide analysis and proteomic studies reveal APE1/Ref-1 multifunctional role in mammalian cells. PMID:19180539
Microarray analysis of distinct gene transcription profiles in non-eosinophilic chronic sinusitis with nasal polyps. PMID:19178793
Testing significance relative to a fold-change threshold is a TREAT. PMID:19176553
Identification of modulated genes by three classes of chemopreventive agents at preneoplastic stages in a p53-null mouse mammary tumor model. PMID:19174580
ArrayIDer: automated structural re-annotation pipeline for DNA microarrays. PMID:19166590
Polymorphic mature microRNAs from passenger strand of pre-miR-146a contribute to thyroid cancer. PMID:19164563
The conserved NAD(H)-dependent corepressor CTBP-1 regulates Caenorhabditis elegans life span. PMID:19164523
Orientation, distance, regulation and function of neighbouring genes. PMID:19164091
Regression of pressure-induced left ventricular hypertrophy is characterized by a distinct gene expression profile. PMID:19154930
A Drosophila systems model of pentylenetetrazole induced locomotor plasticity responsive to antiepileptic drugs. PMID:19154620
Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells. PMID:19151716
Overexpression of myocilin in the Drosophila eye activates the unfolded protein response: implications for glaucoma. PMID:19148291
Genome-wide promoter analysis of the SOX4 transcriptional network in prostate cancer cells. PMID:19147588
Differential expression of anti-angiogenic factors and guidance genes in the developing macula. PMID:19145251
Microarray and cDNA sequence analysis of transcription during nerve-dependent limb regeneration. PMID:19144100
Effects of ciglitazone and troglitazone on the proliferation of human stomach cancer cells. PMID:19140230
Reconstruction and functional analysis of altered molecular pathways in human atherosclerotic arteries. PMID:19134193
Studying alternative splicing regulatory networks through partial correlation analysis. PMID:19133160
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. PMID:19131956
Gene expression profiling of human neural progenitor cells following the serum-induced astrocyte differentiation. PMID:19130216
Earthworm genomes, genes and proteins: the (re)discovery of Darwin's worms. PMID:19129111
ContDist: a tool for the analysis of quantitative gene and promoter properties. PMID:19128472
Interactions among type I and type II interferon, tumor necrosis factor, and beta-estradiol in the regulation of immune response-related gene expressions in systemic lupus erythematosus. PMID:19121222
MMP-9 sheds the beta2 integrin subunit (CD18) from macrophages. PMID:19116209
WGCNA: an R package for weighted correlation network analysis. PMID:19114008
Genome-wide co-expression analysis in multiple tissues. PMID:19112506
Zinc replenishment reverses overexpression of the proinflammatory mediator S100A8 and esophageal preneoplasia in the rat. PMID:19111725
Genome-wide innate immune responses in HIV-1-infected macrophages are preserved despite attenuation of the NF-kappa B activation pathway. PMID:19109163
Identification of neuronal target genes for CCAAT/enhancer binding proteins. PMID:19103292
Detecting shared pathogenesis from the shared genetics of immune-related diseases. PMID:19092835
STOX1 overexpression in choriocarcinoma cells mimics transcriptional alterations observed in preeclamptic placentas. PMID:19079545
Acute appendicitis is characterized by a uniform and highly selective pattern of inflammatory gene expression. PMID:19079191
Deletion of Scap in alveolar type II cells influences lung lipid homeostasis and identifies a compensatory role for pulmonary lipofibroblasts. PMID:19074148
Co-inhibition of Plasmodium falciparum S-adenosylmethionine decarboxylase/ornithine decarboxylase reveals perturbation-specific compensatory mechanisms by transcriptome, proteome, and metabolome analyses. PMID:19073607
Age-dependent signature of metallothionein expression in primary CD4 T cell responses is due to sustained zinc signaling. PMID:19072254
Genome-wide analysis reveals Sall4 to be a major regulator of pluripotency in murine-embryonic stem cells. PMID:19060217
Glucocorticoid- and protein kinase A-dependent transcriptome regulation in airway smooth muscle. PMID:19059887
Identification of common genetic variants that account for transcript isoform variation between human populations. PMID:19052777
Network integration and graph analysis in mammalian molecular systems biology. PMID:19045817
AML1/ETO oncoprotein is directed to AML1 binding regions and co-localizes with AML1 and HEB on its targets. PMID:19043539
Monocytes of patients with familial hypercholesterolemia show alterations in cholesterol metabolism. PMID:19040724
LRpath: a logistic regression approach for identifying enriched biological groups in gene expression data. PMID:19038984
Effect of leptin on mouse trophoblast giant cells. PMID:19038858
p53-Repressed miRNAs are involved with E2F in a feed-forward loop promoting proliferation. PMID:19034270
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. PMID:19033363
Different transcriptional control of metabolism and extracellular matrix in visceral and subcutaneous fat of obese and rimonabant treated mice. PMID:19030233
Gene expression in the human mammary epithelium during lactation: the milk fat globule transcriptome. PMID:19018045
Translating the COPD transcriptome: insights into pathogenesis and tools for clinical management. PMID:19017738
Transcriptional response of rat frontal cortex following acute in vivo exposure to the pyrethroid insecticides permethrin and deltamethrin. PMID:19017407
Microarray analysis of gene expression in rat cortical neurons exposed to hyperbaric air and oxygen. PMID:19015983
Global gene expression profiling of oral cavity cancers suggests molecular heterogeneity within anatomic subsites. PMID:19014556
Mutation of ERBB2 provides a novel alternative mechanism for the ubiquitous activation of RAS-MAPK in ovarian serous low malignant potential tumors. PMID:19010816
Dissection of a QTL hotspot on mouse distal chromosome 1 that modulates neurobehavioral phenotypes and gene expression. PMID:19008955
A role for mammalian Sin3 in permanent gene silencing. PMID:18995834
Putative psychosis genes in the prefrontal cortex: combined analysis of gene expression microarrays. PMID:18992145
Gene expression profiling in chicken heterophils with Salmonella enteritidis stimulation using a chicken 44 K Agilent microarray. PMID:18990222
Differential gene expression associated with postnatal equine articular cartilage maturation. PMID:18986532
Genome-wide profiling of PPARgamma:RXR and RNA polymerase II occupancy reveals temporal activation of distinct metabolic pathways and changes in RXR dimer composition during adipogenesis. PMID:18981474
PPARgamma and C/EBP factors orchestrate adipocyte biology via adjacent binding on a genome-wide scale. PMID:18981473
Elucidating the role of gonadal hormones in sexually dimorphic gene coexpression networks. PMID:18974276
Gene expression signatures of a fibroblastoid preosteoblast and cuboidal osteoblast cell model compared to the MLO-Y4 osteocyte cell model. PMID:18973839
Boolean implication networks derived from large scale, whole genome microarray datasets. PMID:18973690
Chromatin immunoprecipitation on microarray analysis of Smad2/3 binding sites reveals roles of ETS1 and TFAP2A in transforming growth factor beta signaling. PMID:18955504
Genomic Analysis Highlights the Role of the JAK-STAT Signaling in the Anti-proliferative Effects of Dietary Flavonoid-'Ashwagandha' in Prostate Cancer Cells. PMID:18955307
Technical considerations in using DNA microarrays to define regulons. PMID:18955146
Chromosomal instability is associated with higher expression of genes implicated in epithelial-mesenchymal transition, cancer invasiveness, and metastasis and with lower expression of genes involved in cell cycle checkpoints, DNA repair, and chromatin maintenance. PMID:18953431
Tissue specific differentially methylated regions (TDMR): Changes in DNA methylation during development. PMID:18952162
Transcriptional response of Mexican axolotls to Ambystoma tigrinum virus (ATV) infection. PMID:18937860
Regulatory network analyses reveal genome-wide potentiation of LIF signaling by glucocorticoids and define an innate cell defense response. PMID:18927629
Expression analysis of Barrett's esophagus-associated high-grade dysplasia in laser capture microdissected archival tissue. PMID:18927283
An integrated approach for the analysis of biological pathways using mixed models. PMID:18852846
Ascorbate peroxidase 1 plays a key role in the response of Arabidopsis thaliana to stress combination. PMID:18852264
Prioritizing genes of potential relevance to diseases affected by sex hormones: an example of myasthenia gravis. PMID:18851734
Application of a global proteomic approach to archival precursor lesions: deleted in malignant brain tumors 1 and tissue transglutaminase 2 are upregulated in pancreatic cancer precursors. PMID:18849643
Molecular biomarkers for quantitative and discrete COPD phenotypes. PMID:18849563
Mutant huntingtin activates Nrf2-responsive genes and impairs dopamine synthesis in a PC12 model of Huntington's disease. PMID:18844975
Modulated expression of WFDC1 during carcinogenesis and cellular senescence. PMID:18842679
Variations in the transcriptome of Alzheimer's disease reveal molecular networks involved in cardiovascular diseases. PMID:18842138
DAVID gene ID conversion tool. PMID:18841237
Maternal Oct-4 is a potential key regulator of the developmental competence of mouse oocytes. PMID:18837968
E2F in vivo binding specificity: comparison of consensus versus nonconsensus binding sites. PMID:18836037
Quantitative transcriptional neuroanatomy of the rat hippocampus: evidence for wide-ranging, pathway-specific heterogeneity among three principal cell layers. PMID:18830999
Modeling gene-by-environment interaction in comorbid depression with alcohol use disorders via an integrated bioinformatics approach. PMID:18822146
Regulatory subunits of PKA define an axis of cellular proliferation/differentiation in ovarian cancer cells. PMID:18822129
Presenting and exploring biological pathways with PathVisio. PMID:18817533
Different gene-expression profiles for the poorly differentiated carcinoma and the highly differentiated papillary adenocarcinoma in mammary glands support distinct metabolic pathways. PMID:18811984
Genetic associations with thalidomide mediated venous thrombotic events in myeloma identified using targeted genotyping. PMID:18805967
Systematic bioinformatic analysis of expression levels of 17,330 human genes across 9,783 samples from 175 types of healthy and pathological tissues. PMID:18803840
Hedgehog signaling regulates epithelial-mesenchymal transition during biliary fibrosis in rodents and humans. PMID:18802480
SQUAT: A web tool to mine human, murine and avian SAGE data. PMID:18801154
Genome-wide transcriptional response of primary alveolar macrophages following infection with porcine reproductive and respiratory syndrome virus. PMID:18796724
Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2. PMID:18794351
From microarray to biology: an integrated experimental, statistical and in silico analysis of how the extracellular matrix modulates the phenotype of cancer cells. PMID:18793468
The evolving transcriptome of head and neck squamous cell carcinoma: a systematic review. PMID:18791647
Metabolomic signatures of inbreeding at benign and stressful temperatures in Drosophila melanogaster. PMID:18791253
Transcriptomic signature of bexarotene (rexinoid LGD1069) on mammary gland from three transgenic mouse mammary cancer models. PMID:18786257
Identification and analysis of co-occurrence networks with NetCutter. PMID:18781200
Genome-wide analysis of natural selection on human cis-elements. PMID:18781197
The deacetylase HDAC4 controls myocyte enhancing factor-2-dependent structural gene expression in response to neural activity. PMID:18780762
Comparisons of tyrosine phosphorylated proteins in cells expressing lung cancer-specific alleles of EGFR and KRAS. PMID:18776048
Gene microarray analysis of human renal cell carcinoma: the effects of HDAC inhibition and retinoid treatment. PMID:18769122
Combining Shapley value and statistics to the analysis of gene expression data in children exposed to air pollution. PMID:18764936
Supervised principal component analysis for gene set enrichment of microarray data with continuous or survival outcomes. PMID:18753155
Effect of starvation on transcriptomes of brain and liver in adult female zebrafish (Danio rerio). PMID:18728227
CD4+ T-cell decline after the interruption of antiretroviral therapy in ACTG A5170 is predicted by differential expression of genes in the ras signaling pathway. PMID:18724805
Transcriptome-wide assessment of human brain and lymphocyte senescence. PMID:18714388
Improved elucidation of biological processes linked to diabetic nephropathy by single probe-based microarray data analysis. PMID:18698414
Constructing disease-specific gene networks using pair-wise relevance metric: application to colon cancer identifies interleukin 8, desmin and enolase 1 as the central elements. PMID:18691435
Human neural crest cells display molecular and phenotypic hallmarks of stem cells. PMID:18689800
Preservation of genes involved in sterol metabolism in cholesterol auxotrophs: facts and hypotheses. PMID:18682733
Promoter ChIP-chip analysis in mouse testis reveals Y chromosome occupancy by HSF2. PMID:18682557
Label-free quantitative analysis of one-dimensional PAGE LC/MS/MS proteome: application on angiotensin II-stimulated smooth muscle cells secretome. PMID:18676994
Carcinogen-altered genes in rat esophagus positively modulated to normal levels of expression by both black raspberries and phenylethyl isothiocyanate. PMID:18676871
Trait correlated expression combined with expression QTL analysis reveals biological pathways and candidate genes affecting water holding capacity of muscle. PMID:18671879
A quantitative atlas of mitotic phosphorylation. PMID:18669648
Sex-specific pathways in early cardiac response to pressure overload in mice. PMID:18665344
Identify alternative splicing events based on position-specific evolutionary conservation. PMID:18665247
Proteomic and computational analysis of bronchoalveolar proteins during the course of the acute respiratory distress syndrome. PMID:18658106
Glucocorticoid signaling defines a novel commitment state during adipogenesis in vitro. PMID:18653467
Celecoxib pre-treatment in human colorectal adenocarcinoma patients is associated with gene expression alterations suggestive of diminished cellular proliferation. PMID:18653328
Altered metabolism of growth hormone receptor mutant mice: a combined NMR metabonomics and microarray study. PMID:18648510
Differentiation of two types of mobilized peripheral blood stem cells by microRNA and cDNA expression analysis. PMID:18647411
Challenges and solutions in proteomics. PMID:18645629
Significance analysis of spectral count data in label-free shotgun proteomics. PMID:18644780
Genes responsive to both oxidant stress and loss of estrogen receptor function identify a poor prognosis group of estrogen receptor positive primary breast cancers. PMID:18631401
Evolutionary conservation of zinc finger transcription factor binding sites in promoters of genes co-expressed with WT1 in prostate cancer. PMID:18631392
Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement. PMID:18625908
A pro-inflammatory signature mediates FGF2-induced angiogenesis. PMID:18624773
Diabetic neuropathy: mechanisms to management. PMID:18616962
Identification of a common gene expression response in different lung inflammatory diseases in rodents and macaques. PMID:18612392
Meta-analysis of nasopharyngeal carcinoma microarray data explores mechanism of EBV-regulated neoplastic transformation. PMID:18605998
Kruppel-like factor 5 is required for perinatal lung morphogenesis and function. PMID:18599506
Gene network dynamics controlling keratinocyte migration. PMID:18594517
Association between PPARGC1A polymorphisms and the occurrence of nonalcoholic fatty liver disease (NAFLD). PMID:18588668
Rosiglitazone treatment reduces diabetic neuropathy in streptozotocin-treated DBA/2J mice. PMID:18583417
Identification of the TFII-I family target genes in the vertebrate genome. PMID:18579769
Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease. PMID:18577208
Macrophage and T-cell gene expression in a model of early infection with the protozoan Leishmania chagasi. PMID:18575603
Global gene expression as a function of the iron status of the bacterial cell: influence of differentially expressed genes in the virulence of the human pathogen Vibrio vulnificus. PMID:18573903
Role of copper,zinc-superoxide dismutase in catalyzing nitrotyrosine formation in murine liver. PMID:18573333
Stability of gene contributions and identification of outliers in multivariate analysis of microarray data. PMID:18570644
An evolutionarily conserved sexual signature in the primate brain. PMID:18566661
In silico regulatory analysis for exploring human disease progression. PMID:18564415
The molecular basis of shoot responses of maize seedlings to Trichoderma harzianum T22 inoculation of the root: a proteomic approach. PMID:18562766
Pleiotropic effects of Drosophila neuralized on complex behaviors and brain structure. PMID:18562639
Stemming cancer: functional genomics of cancer stem cells in solid tumors. PMID:18561035
Time course profiling of the retinal transcriptome after optic nerve transection and optic nerve crush. PMID:18552980
Genomic analysis of Drosophila neuronal remodeling: a role for the RNA-binding protein Boule as a negative regulator of axon pruning. PMID:18550751
Sources of variation in baseline gene expression levels from toxicogenomics study control animals across multiple laboratories. PMID:18549499
Identification of differentially expressed proteins in spontaneous thymic lymphomas from knockout mice with deletion of p53. PMID:18544163
Specific DNA-binding by apicomplexan AP2 transcription factors. PMID:18541913
Improving the power for detecting overlapping genes from multiple DNA microarray-derived gene lists. PMID:18541049
Corticolimbic transcriptome changes are state-dependent and region-specific in a rodent model of depression and of antidepressant reversal. PMID:18536703
Differential placental gene expression in preeclampsia. PMID:18533121
Bioinformatic tools for inferring functional information from plant microarray data: tools for the first steps. PMID:18528524
High-throughput screening assay for the identification of compounds regulating self-renewal and differentiation in human embryonic stem cells. PMID:18522853
Functional characterization of endogenous siRNA target genes in Caenorhabditis elegans. PMID:18522735
'Systems toxicology' approach identifies coordinated metabolic responses to copper in a terrestrial non-model invertebrate, the earthworm Lumbricus rubellus. PMID:18522721
Transcriptome profiling of developmental and xenobiotic responses in a keystone soil animal, the oligochaete annelid Lumbricus rubellus. PMID:18522720
On the necessity of different statistical treatment for Illumina BeadChip and Affymetrix GeneChip data and its significance for biological interpretation. PMID:18522715
Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments. PMID:18515841
Temporal profiling of the chromatin proteome reveals system-wide responses to replication inhibition. PMID:18514518
Divergence of canonical danger signals: the genome-level expression patterns of human mononuclear cells subjected to heat shock or lipopolysaccharide. PMID:18510776
The MYCN oncogene is a direct target of miR-34a. PMID:18504438
Comprehensive analysis of the mouse renal cortex using two-dimensional HPLC - tandem mass spectrometry. PMID:18501002
alpha- and gamma-Tocopherol prevent age-related transcriptional alterations in the heart and brain of mice. PMID:18492827
Genomic analysis of post-mating changes in the honey bee queen (Apis mellifera). PMID:18489784
GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis. PMID:18487275
Age-related gene expression in Tourette syndrome. PMID:18485367
Sex-specific early growth hormone response genes in rat liver. PMID:18483176
Epithelial-to-mesenchymal transition in early transplant tubulointerstitial damage. PMID:18480317
MADNet: microarray database network web server. PMID:18480121
Concordant gene expression in leukemia cells and normal leukocytes is associated with germline cis-SNPs. PMID:18478092
Haploinsufficiency of RPS14 in 5q- syndrome is associated with deregulation of ribosomal- and translation-related genes. PMID:18477045
Immune responses to Pneumocystis murina are robust in healthy mice but largely absent in CD40 ligand-deficient mice. PMID:18467653
Colonic gene expression profile in NHE3-deficient mice: evidence for spontaneous distal colitis. PMID:18467500
Network-based global inference of human disease genes. PMID:18463613
Validating the genomic signature of pediatric septic shock. PMID:18460642
The estrogen hypothesis of schizophrenia implicates glucose metabolism: association study in three independent samples. PMID:18460190
In vivo gene expression profiling of human intestinal epithelial cells: analysis by laser microdissection of formalin fixed tissues. PMID:18457593
The Mediator subunit MDT-15 confers metabolic adaptation to ingested material. PMID:18454197
MassNet: a functional annotation service for protein mass spectrometry data. PMID:18448467
Transcriptome analysis identifies pathways associated with enhanced maternal performance in QSi5 mice. PMID:18442417
Direct targets of the TRP63 transcription factor revealed by a combination of gene expression profiling and reverse engineering. PMID:18441228
Effects of prenatal tobacco exposure on gene expression profiling in umbilical cord tissue. PMID:18437100
The fibromatosis signature defines a robust stromal response in breast carcinoma. PMID:18414401
Analysis of the mechanisms mediating tumor-specific changes in gene expression in human liver tumors. PMID:18413731
Cross-species comparison of human and mouse intestinal polyps reveals conserved mechanisms in adenomatous polyposis coli (APC)-driven tumorigenesis. PMID:18403596
ERdj4 and ERdj5 are required for endoplasmic reticulum-associated protein degradation of misfolded surfactant protein C. PMID:18400946
Histone deacetylase inhibition accelerates the early events of stem cell differentiation: transcriptomic and epigenetic analysis. PMID:18394158
Two-dimensional strong cation exchange/porous layer open tubular/mass spectrometry for ultratrace proteomic analysis using a 10 microm id poly(styrene- divinylbenzene) porous layer open tubular column with an on-line triphasic trapping column. PMID:18383016
Effect of destrin mutations on the gene expression profile in vivo. PMID:18381839
Phenotype of the Cyp1a1/1a2/1b1-/- triple-knockout mouse. PMID:18372398
A comprehensive negative regulatory program controlled by Brn3b to ensure ganglion cell specification from multipotential retinal precursors. PMID:18367606
Persistent changes in spinal cord gene expression after recovery from inflammatory hyperalgesia: a preliminary study on pain memory. PMID:18366630
A sequence-based survey of the complex structural organization of tumor genomes. PMID:18364049
Integrating global gene expression analysis and genetics. PMID:18358333
Exon-level expression profiling: a comprehensive transcriptome analysis of oral fluids. PMID:18356245
Using ChIP-chip technology to reveal common principles of transcriptional repression in normal and cancer cells. PMID:18347325
Misexpression of MIA disrupts lung morphogenesis and causes neonatal death. PMID:18342301
Genomic evolution of the placenta using co-option and duplication and divergence. PMID:18340042
Global identification of Myc target genes reveals its direct role in mitochondrial biogenesis and its E-box usage in vivo. PMID:18335064
Heterogeneity of human macrophages in culture and in atherosclerotic plaques. PMID:18321997
Phenotype reversion in fetal human liver epithelial cells identifies the role of an intermediate meso-endodermal stage before hepatic maturation. PMID:18319302
MADIBA: a web server toolkit for biological interpretation of Plasmodium and plant gene clusters. PMID:18307768
Discovery of agents that eradicate leukemia stem cells using an in silico screen of public gene expression data. PMID:18305216
Distinct genomic signatures of adaptation in pre- and postnatal environments during human evolution. PMID:18305157
Merging microarray data from separate breast cancer studies provides a robust prognostic test. PMID:18304324
The MHC class I peptide repertoire is molded by the transcriptome. PMID:18299400
Predominance of interferon-related responses in the brain during murine malaria, as identified by microarray analysis. PMID:18299338
Simple integrative preprocessing preserves what is shared in data sources. PMID:18291027
Evaluation of gene expression profiles of immature dendritic cells prepared from peripheral blood mononuclear cells. PMID:18282241
Liver-specific hepatocyte nuclear factor-4alpha deficiency: greater impact on gene expression in male than in female mouse liver. PMID:18276827
Plasticity of the systemic inflammatory response to acute infection during critical illness: development of the riboleukogram. PMID:18270561
Effect of thyroid hormone concentration on the transcriptional response underlying induced metamorphosis in the Mexican axolotl (Ambystoma). PMID:18267027
Analysis of the retinal gene expression profile after hypoxic preconditioning identifies candidate genes for neuroprotection. PMID:18261226
Activation of counter-regulatory mechanisms in a rat renal acute rejection model. PMID:18261221
Characterization of a newly developed chicken 44K Agilent microarray. PMID:18237426
Inactivation of the 3-phosphoglycerate dehydrogenase gene in mice: changes in gene expression and associated regulatory networks resulting from serine deficiency. PMID:18228065
Meta-analysis of breast cancer microarray studies in conjunction with conserved cis-elements suggest patterns for coordinate regulation. PMID:18226260
Variations in the progranulin gene affect global gene expression in frontotemporal lobar degeneration. PMID:18223198
Novel insights into the relationships between dendritic cell subsets in human and mouse revealed by genome-wide expression profiling. PMID:18218067
Acute rejection modulates gene expression in the collecting duct. PMID:18216318
TERT promotes epithelial proliferation through transcriptional control of a Myc- and Wnt-related developmental program. PMID:18208333
Protective effects of dietary curcumin in mouse model of chemically induced colitis are strain dependent. PMID:18200517
Defective signal transduction in B lymphocytes lacking presenilin proteins. PMID:18195359
Sequential and concerted gene expression changes in a chronic in vitro model of parkinsonism. PMID:18191903
Transcriptional dysregulation in a transgenic model of Parkinson disease. PMID:18191405
Identification of cancer genes using a statistical framework for multiexperiment analysis of nondiscretized array CGH data. PMID:18187509
Genomic chart guiding embryonic stem cell cardiopoiesis. PMID:18184438
Coordinated evolution of co-expressed gene clusters in the Drosophila transcriptome. PMID:18179715
Regulation of liver regeneration and hepatocarcinogenesis by suppressor of cytokine signaling 3. PMID:18158318
Antagonism of microRNA-122 in mice by systemically administered LNA-antimiR leads to up-regulation of a large set of predicted target mRNAs in the liver. PMID:18158304
A genome-wide approach identifies distinct but overlapping subsets of cellular mRNAs associated with Staufen1- and Staufen2-containing ribonucleoprotein complexes. PMID:18094122
Comparison of the effects of Leishmania major or Leishmania donovani infection on macrophage gene expression. PMID:18086813
Investigating the genetic circuitry of mastermind in Drosophila, a notch signal effector. PMID:18073442
Gene expression and biological processes influenced by deletion of Stat3 in pulmonary type II epithelial cells. PMID:18070348
Broad network-based predictability of Saccharomyces cerevisiae gene loss-of-function phenotypes. PMID:18053250
Prediction of synergistic transcription factors by function conservation. PMID:18053230
Genomic and functional studies of Drosophila sex hierarchy regulated gene expression in adult head and nervous system tissues. PMID:18039034
Eigengene networks for studying the relationships between co-expression modules. PMID:18031580
Genome-wide expression profiling and bioinformatics analysis of diurnally regulated genes in the mouse prefrontal cortex. PMID:18028544
The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications. PMID:18021453
GeneChip analysis of human embryonic stem cell differentiation into hemangioblasts: an in silico dissection of mixed phenotypes. PMID:17999768
High-throughput analysis of promoter occupancy reveals direct neural targets of FOXP2, a gene mutated in speech and language disorders. PMID:17999362
Identification of the transcriptional targets of FOXP2, a gene linked to speech and language, in developing human brain. PMID:17999357
Suicide candidate genes associated with bipolar disorder and schizophrenia: an exploratory gene expression profiling analysis of post-mortem prefrontal cortex. PMID:17997842
Co-factors of LIM domains (Clims/Ldb/Nli) regulate corneal homeostasis and maintenance of hair follicle stem cells. PMID:17991461
DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis. PMID:17980028
Genome-wide analyses of human perisylvian cerebral cortical patterning. PMID:17978184
Conditional deletion of Smad1 and Smad5 in somatic cells of male and female gonads leads to metastatic tumor development in mice. PMID:17967875
A critical developmental switch defines the kinetics of kidney cyst formation after loss of Pkd1. PMID:17965720
Large-scale analysis by SAGE reveals new mechanisms of v-erbA oncogene action. PMID:17961265
Computational selection and prioritization of candidate genes for fetal alcohol syndrome. PMID:17961254
Simplified ontologies allowing comparison of developmental mammalian gene expression. PMID:17961239
BMDExpress: a software tool for the benchmark dose analyses of genomic data. PMID:17961223
Constitutively active Akt induces ectodermal defects and impaired bone morphogenetic protein signaling. PMID:17959825
Rapid onset of intestinal epithelial barrier dysfunction in primary human immunodeficiency virus infection is driven by an imbalance between immune response and mucosal repair and regeneration. PMID:17959677
Regulatory pathway analysis by high-throughput in situ hybridization. PMID:17953485
Time course investigation of PPARalpha- and Kupffer cell-dependent effects of WY-14,643 in mouse liver using microarray gene expression. PMID:17950772
Proteomics reveals multiple routes to the osteogenic phenotype in mesenchymal stem cells. PMID:17949499
Hepatic transcriptional networks induced by exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin. PMID:17949056
SH2B1beta (SH2-Bbeta) enhances expression of a subset of nerve growth factor-regulated genes important for neuronal differentiation including genes encoding urokinase plasminogen activator receptor and matrix metalloproteinase 3/10. PMID:17947375
Gene expression profiling of Hfe-/- liver and duodenum in mouse strains with differing susceptibilities to iron loading: identification of transcriptional regulatory targets of Hfe and potential hemochromatosis modifiers. PMID:17945001
Distinctive patterns of microRNA expression in primary muscular disorders. PMID:17942673
Improved human disease candidate gene prioritization using mouse phenotype. PMID:17939863
Comparative gene expression profiling in two congenic mouse strains following Bordetella pertussis infection. PMID:17935610
Genome-level longitudinal expression of signaling pathways and gene networks in pediatric septic shock. PMID:17932561
Individual matrix metalloproteinases control distinct transcriptional responses in airway epithelial cells infected with Pseudomonas aeruginosa. PMID:17923522
Analysis of breast cancer progression using principal component analysis and clustering. PMID:17914245
Characterization of oligopeptide patterns in large protein sets. PMID:17908308
The C. elegans TGF-beta Dauer pathway regulates longevity via insulin signaling. PMID:17900898
Regional differences in dosage compensation on the chicken Z chromosome. PMID:17900367
Linking microarray reporters with protein functions. PMID:17897448
Large-scale estimates of cellular origins of mRNAs: enhancing the yield of transcriptome analyses. PMID:17889939
Gene expression analysis in pregnant women and their infants identifies unique fetal biomarkers that circulate in maternal blood. PMID:17885688
Integrated analysis of independent gene expression microarray datasets improves the predictability of breast cancer outcome. PMID:17883867
An integrated analysis of genes and pathways exhibiting metabolic differences between estrogen receptor positive breast cancer cells. PMID:17883861
OCPAT: an online codon-preserved alignment tool for evolutionary genomic analysis of protein coding sequences. PMID:17877817
Expression and regulation of CCL18 in synovial fluid neutrophils of patients with rheumatoid arthritis. PMID:17875202
Breast cancer molecular signatures as determined by SAGE: correlation with lymph node status. PMID:17855657
Characterization of the effect of sample quality on high density oligonucleotide microarray data using progressively degraded rat liver RNA. PMID:17854504
Aging impacts transcriptomes but not genomes of hormone-dependent breast cancers. PMID:17850661
EDISA: extracting biclusters from multiple time-series of gene expression profiles. PMID:17850657
Modulation by decitabine of gene expression and growth of osteosarcoma U2OS cells in vitro and in xenografts: identification of apoptotic genes as targets for demethylation. PMID:17845729
Transcriptomic and phenotypic analysis of murine embryonic stem cell derived BMP2+ lineage cells: an insight into mesodermal patterning. PMID:17784959
The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists. PMID:17784955
Meta-analysis of 12 genomic studies in bipolar disorder. PMID:17726228
B cell activator PAX5 promotes lymphomagenesis through stimulation of B cell receptor signaling. PMID:17717600
Unbiased gene expression analysis implicates the huntingtin polyglutamine tract in extra-mitochondrial energy metabolism. PMID:17708681
Comparison of the cytotoxicity of the nitroaromatic drug flutamide to its cyano analogue in the hepatocyte cell line TAMH: evidence for complex I inhibition and mitochondrial dysfunction using toxicogenomic screening. PMID:17702527
Cell- and gene-specific regulation of primary target genes by the androgen receptor. PMID:17699749
The roles of binding site arrangement and combinatorial targeting in microRNA repression of gene expression. PMID:17697356
Portraits of breast cancer progression. PMID:17683614
The MicroRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing. PMID:17679093
Weighted gene coexpression network analysis strategies applied to mouse weight. PMID:17668265
Global gene expression profiling of ischemic preconditioning in the rat retina. PMID:17653046
Sexually dimorphic gene expression in the heart of mice and men. PMID:17646949
EasyGO: Gene Ontology-based annotation and functional enrichment analysis tool for agronomical species. PMID:17645808
MYC2 differentially modulates diverse jasmonate-dependent functions in Arabidopsis. PMID:17616737
Effects of phenylethyl isothiocyanate on early molecular events in N-nitrosomethylbenzylamine-induced cytotoxicity in rat esophagus. PMID:17616710
Post hoc pattern matching: assigning significance to statistically defined expression patterns in single channel microarray data. PMID:17615071
Morphine effects on striatal transcriptome in mice. PMID:17598886
Integrative analysis of the mouse embryonic transcriptome. PMID:17597930
DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists. PMID:17576678
Gene expression arrays as a tool to unravel mechanisms of normal tissue radiation injury and prediction of response. PMID:17569134
Common molecular pathways involved in human CD133+/CD34+ progenitor cell expansion and cancer. PMID:17559657
A functional map of NFkappaB signaling identifies novel modulators and multiple system controls. PMID:17553156
Joint mapping of genes and conditions via multidimensional unfolding analysis. PMID:17550582
Understanding network concepts in modules. PMID:17547772
Genome Expression Pathway Analysis Tool--analysis and visualization of microarray gene expression data under genomic, proteomic and metabolic context. PMID:17543125
A novel view of the transcriptome revealed from gene trapping in mouse embryonic stem cells. PMID:17540781
Transactivation of miR-34a by p53 broadly influences gene expression and promotes apoptosis. PMID:17540599
Interferon-mediated immunopathological events are associated with atypical innate and adaptive immune responses in patients with severe acute respiratory syndrome. PMID:17537853
Transcription factor modularity in a gene-centered C. elegans core neuronal protein-DNA interaction network. PMID:17513831
Silencing of core transcription factors in human EC cells highlights the importance of autocrine FGF signaling for self-renewal. PMID:17506876
Revealing signaling pathway deregulation by using gene expression signatures and regulatory motif analysis. PMID:17498287
The proteome of the mouse photoreceptor sensory cilium complex. PMID:17494944
Inadequate protein intake affects skeletal muscle transcript profiles in older humans. PMID:17490972
Identification of mRNAs that continue to associate with polysomes during hypoxia. PMID:17488873
Lung response to Bordetella pertussis infection in mice identified by gene-expression profiling. PMID:17487483
g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments. PMID:17478515
FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments. PMID:17478504
Genomic analysis of human lung fibroblasts exposed to vanadium pentoxide to identify candidate genes for occupational bronchitis. PMID:17459161
Up-regulation of tissue factor in human pulmonary artery endothelial cells after ultrafine particle exposure. PMID:17450221
Neonatal dopamine depletion induces changes in morphogenesis and gene expression in the developing cortex. PMID:17449454
Transcriptional profile of Rous Sarcoma Virus transformed chicken embryo fibroblasts reveals new signaling targets of viral-src. PMID:17448514
Activation of MAPK pathways links LMNA mutations to cardiomyopathy in Emery-Dreifuss muscular dystrophy. PMID:17446932
The early developmental gene Semaphorin 5c contributes to olfactory behavior in adult Drosophila. PMID:17435226
Statistical analysis of genomic protein family and domain controlled annotations for functional investigation of classified gene lists. PMID:17430558
Global transcriptome analysis of murine embryonic stem cell-derived cardiomyocytes. PMID:17428332
Differential cerebral cortex transcriptomes of baboon neonates consuming moderate and high docosahexaenoic acid formulas. PMID:17426818
Expression profiling of genes regulated by TGF-beta: differential regulation in normal and tumour cells. PMID:17425807
Gene expression profiles differentiate between sterile SIRS and early sepsis. PMID:17414611
Graph-based identification of cancer signaling pathways from published gene expression signatures using PubLiME. PMID:17389643
Novel markers for differentiation of lobular and ductal invasive breast carcinomas by laser microdissection and microarray analysis. PMID:17389037
Including probe-level uncertainty in model-based gene expression clustering. PMID:17376221
Genome-level expression profiles in pediatric septic shock indicate a role for altered zinc homeostasis in poor outcome. PMID:17374846
Pleiotropic effects and compensation mechanisms determine tissue specificity in mitochondrial myopathy and sideroblastic anemia (MLASA). PMID:17374500
Transcriptional profiling of C57 and DBA strains of mice in the absence and presence of morphine. PMID:17367521
The role of mtDNA mutations in the pathogenesis of age-related hearing loss in mice carrying a mutator DNA polymerase gamma. PMID:17363114
Differential gene expression of p27Kip1 and Rb knockout pituitary tumors associated with altered growth and angiogenesis. PMID:17361101
Amplified expression profiling of platelet transcriptome reveals changes in arginine metabolic pathways in patients with sickle cell disease. PMID:17353439
Microarray analysis reveals that Type I interferon strongly increases the expression of immune-response related genes in Ubp43 (Usp18) deficient macrophages. PMID:17349616
Dysregulation of X-linked gene expression in Klinefelter's syndrome and association with verbal cognition. PMID:17347996
The molecular signature of therapeutic mesenchymal stem cells exposes the architecture of the hematopoietic stem cell niche synapse. PMID:17341312
The (in)dependence of alternative splicing and gene duplication. PMID:17335345
microRNA expression in the prefrontal cortex of individuals with schizophrenia and schizoaffective disorder. PMID:17326821
Using gene chips to identify organ-specific, smooth muscle responses to experimental diabetes: potential applications to urological diseases. PMID:17313427
Gene expression analysis in human osteoblasts exposed to dexamethasone identifies altered developmental pathways as putative drivers of osteoporosis. PMID:17295923
Identification of genes directly regulated by the oncogene ZNF217 using chromatin immunoprecipitation (ChIP)-chip assays. PMID:17259635
Differential gene expression in CD8(+) cells from HIV-1-infected subjects showing suppression of HIV replication. PMID:17240414
Discovering biological guilds through topological abstraction. PMID:17238291
DiscoverySpace: an interactive data analysis application. PMID:17210078
A high-resolution map of segmental DNA copy number variation in the mouse genome. PMID:17206864
GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists. PMID:17204154
A genome-wide screen for promoter methylation in lung cancer identifies novel methylation markers for multiple malignancies. PMID:17194187
Repetitive sequence environment distinguishes housekeeping genes. PMID:17141428
Genome-wide identification of functionally distinct subsets of cellular mRNAs associated with two nucleocytoplasmic-shuttling mammalian splicing factors. PMID:17137510
AgBase: a unified resource for functional analysis in agriculture. PMID:17135208
Absolute enrichment: gene set enrichment analysis for homeostatic systems. PMID:17130162
Meta-analysis of differentiating mouse embryonic stem cell gene expression kinetics reveals early change of a small gene set. PMID:17121458
NOTCH1 directly regulates c-MYC and activates a feed-forward-loop transcriptional network promoting leukemic cell growth. PMID:17114293
Integration and mining of malaria molecular, functional and pharmacological data: how far are we from a chemogenomic knowledge space? PMID:17112376
GO PaD: the Gene Ontology Partition Database. PMID:17098937
A genomic approach to identify regulatory nodes in the transcriptional network of systemic acquired resistance in plants. PMID:17096590
Defining the gene expression signature of rhabdomyosarcoma by meta-analysis. PMID:17090319
Mining expressed sequence tags identifies cancer markers of clinical interest. PMID:17078886
Noninfectious papilloma virus-like particles inhibit HIV-1 replication: implications for immune control of HIV-1 infection by IL-27. PMID:17068156
A central regulatory role for eosinophils and the eotaxin/CCR3 axis in chronic experimental allergic airway inflammation. PMID:17060636
A computational genomics approach to identify cis-regulatory modules from chromatin immunoprecipitation microarray data--a case study using E2F1. PMID:17053090
Cellular and molecular consequences of peroxisome proliferator-activated receptor-gamma activation in ovarian cancer cells. PMID:17032502
Regulation of myogenic progenitor proliferation in human fetal skeletal muscle by BMP4 and its antagonist Gremlin. PMID:17015616
Analysis with respect to instrumental variables for the exploration of microarray data structures. PMID:17010189
Global transcriptome analysis of genetically identified neurons in the adult cortex. PMID:17005859
Diminished production of monocyte proinflammatory cytokines during human immunodeficiency virus viremia is mediated by type I interferons. PMID:17005663
Calcineurin/Nfat signaling is required for perinatal lung maturation and function. PMID:16998587
CROPPER: a metagene creator resource for cross-platform and cross-species compendium studies. PMID:16995941
Integrating genetic and network analysis to characterize genes related to mouse weight. PMID:16934000
Methamphetamine modulates gene expression patterns in monocyte derived mature dendritic cells: implications for HIV-1 pathogenesis. PMID:16884330
A multivariate approach for integrating genome-wide expression data and biological knowledge. PMID:16877751
Repression and loss of gene expression outpaces activation and gain in recently duplicated fly genes. PMID:16864793
Filaria-induced monocyte dysfunction and its reversal following treatment. PMID:16861626
Shuffling of cis-regulatory elements is a pervasive feature of the vertebrate lineage. PMID:16859531
Breast cancer prognosis by combinatorial analysis of gene expression data. PMID:16859500
Integrated functional visualization of eukaryotic genomes. PMID:16848887
Gene expression profiling in Salmonella Choleraesuis-infected porcine lung using a long oligonucleotide microarray. PMID:16845603
A molecular-properties-based approach to understanding PDZ domain proteins and PDZ ligands. PMID:16825666
Involvement of HTLV-I Tax and CREB in aneuploidy: a bioinformatics approach. PMID:16822311
Optimized proteomic analysis of a mouse model of cerebellar dysfunction using amine-specific isobaric tags. PMID:16800037
A multiplexed proteomics approach to differentiate neurite outgrowth patterns. PMID:16797718
Induction of the plasminogen activator system by mechanical stimulation of human bronchial epithelial cells. PMID:16794260
An annotated cDNA library of juvenile Euprymna scolopes with and without colonization by the symbiont Vibrio fischeri. PMID:16780587
Gene expression profiling in the striatum of inbred mouse strains with distinct opioid-related phenotypes. PMID:16772024
Hepatic gene expression response to acute indomethacin exposure. PMID:16771604
A comprehensive structure-function analysis of Arabidopsis SNI1 defines essential regions and transcriptional repressor activity. PMID:16766691
Suz12 binds to silenced regions of the genome in a cell-type-specific manner. PMID:16751344
Alu elements contain many binding sites for transcription factors and may play a role in regulation of developmental processes. PMID:16740159
Lithium administration to preadolescent rats causes long-lasting increases in anxiety-like behavior and has molecular consequences. PMID:16738246
PI3K signaling and miRNA expression during the response of quiescent human fibroblasts to distinct proliferative stimuli. PMID:16737555
The promoters of human cell cycle genes integrate signals from two tumor suppressive pathways during cellular transformation. PMID:16729057
Histamine signaling through the H(2) receptor in the Peyer's patch is important for controlling Yersinia enterocolitica infection. PMID:16717182
Gene expression alterations in brains of mice infected with three strains of scrapie. PMID:16700923
K-SPMM: a database of murine spermatogenic promoters modules & motifs. PMID:16670029
Mitochondrial-related gene expression changes are sensitive to agonal-pH state: implications for brain disorders. PMID:16636682
An online database for brain disease research. PMID:16594998
BMI1 is a target gene of E2F-1 and is strongly expressed in primary neuroblastomas. PMID:16582100
Comparison of gene coverage of mouse oligonucleotide microarray platforms. PMID:16551360
Deciphering cellular states of innate tumor drug responses. PMID:16542501
Transcriptomic response to differentiation induction. PMID:16503971
Gene expression profiles in developing nephrons using Lim1 metanephric mesenchyme-specific conditional mutant mice. PMID:16464245
Eotaxin-3 and a uniquely conserved gene-expression profile in eosinophilic esophagitis. PMID:16453027
Adaptation and increased susceptibility to infection associated with constitutive expression of misfolded SP-C. PMID:16449190
Preliminary evidence of mitochondrial dysfunction associated with post-infective fatigue after acute infection with Epstein Barr virus. PMID:16448567
Identification of an NF-kappaB-dependent gene network in cells infected by mammalian reovirus. PMID:16414985
A systematic approach to infer biological relevance and biases of gene network structures. PMID:16407322
Utilization of two sample t-test statistics from redundant probe sets to evaluate different probe set algorithms in GeneChip studies. PMID:16403228
Wound site neutrophil transcriptome in response to psychological stress in young men. PMID:16358416
Evaluating HapMap SNP data transferability in a large-scale genotyping project involving 175 cancer-associated genes. PMID:16323010
Global gene expression profiles reveal significant nuclear reprogramming by the blastocyst stage after cloning. PMID:16314565
Associating phenotypes with molecular events: recent statistical advances and challenges underpinning microarray experiments. PMID:16292543
PBK/TOPK, a proliferating neural progenitor-specific mitogen-activated protein kinase kinase. PMID:16291951
cGMP-independent nitric oxide signaling and regulation of the cell cycle. PMID:16269079
Isolation of mRNA from specific tissues of Drosophila by mRNA tagging. PMID:16204451
A TNF-induced gene expression program under oscillatory NF-kappaB control. PMID:16191192
Effects of ADMA upon gene expression: an insight into the pathophysiological significance of raised plasma ADMA. PMID:16190779
Gene expression profiles distinguish idiopathic pulmonary fibrosis from hypersensitivity pneumonitis. PMID:16166619
Molecular dissection of mesenchymal-epithelial interactions in the hair follicle. PMID:16162033
Storing, linking, and mining microarray databases using SRS. PMID:16048644
Genomic analysis of metabolic pathway gene expression in mice. PMID:15998448
Transcription profiling of C/EBP targets identifies Per2 as a gene implicated in myeloid leukemia. PMID:15985538
FACT--a framework for the functional interpretation of high-throughput experiments. PMID:15985174
Recent additions and improvements to the Onto-Tools. PMID:15980579
WebGestalt: an integrated system for exploring gene sets in various biological contexts. PMID:15980575
GFINDer: genetic disease and phenotype location statistical analysis and mining of dynamically annotated gene lists. PMID:15980570
RACE: Remote Analysis Computation for gene Expression data. PMID:15980552
ArrayXPath II: mapping and visualizing microarray gene-expression data with biomedical ontologies and integrated biological pathway resources using Scalable Vector Graphics. PMID:15980549
Inactivation of Myc in murine two-hit B lymphomas causes dormancy with elevated levels of interleukin 10 receptor and CD20: implications for adjuvant therapies. PMID:15958595
PAGE: parametric analysis of gene set enrichment. PMID:15941488
Dissection of a DNA-damage-induced transcriptional network using a combination of microarrays, RNA interference and computational promoter analysis. PMID:15892871
Gene expression profile of cervical tissue compared to exfoliated cells: impact on biomarker discovery. PMID:15876354
PathwayVoyager: pathway mapping using the Kyoto Encyclopedia of Genes and Genomes (KEGG) database. PMID:15869710
Promoter features related to tissue specificity as measured by Shannon entropy. PMID:15833120
Gene expression signature of estrogen receptor alpha status in breast cancer. PMID:15762987
Consensus clustering and functional interpretation of gene-expression data. PMID:15535870
From mice to humans: identification of commonly deregulated genes in mammary cancer via comparative SAGE studies. PMID:15520179
Handling multiple testing while interpreting microarrays with the Gene Ontology Database. PMID:15350198
Lineage-specific gene duplication and loss in human and great ape evolution. PMID:15252450
ArrayXPath: mapping and visualizing microarray gene-expression data with integrated biological pathway resources using Scalable Vector Graphics. PMID:15215430
Onto-Tools: an ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments. PMID:15215428
GFINDer: Genome Function INtegrated Discoverer through dynamic annotation, statistical analysis, and mining. PMID:15215397
A survey of ovary-, testis-, and soma-biased gene expression in Drosophila melanogaster adults. PMID:15186491
POCUS: mining genomic sequence annotation to predict disease genes. PMID:14611661
Gender-specific gene expression in post-mortem human brain: localization to sex chromosomes. PMID:14583743
Identifying biological themes within lists of genes with EASE. PMID:14519205 -
DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists
PubMed citations: 925.
925 articles citing: DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists
Histone chaperone HIRA complex regulates retrotransposons in embryonic stem cells. PMID:35365225
Application of Transcriptomics for Predicting Protein Interaction Networks, Drug Targets and Drug Candidates. PMID:35356062
Screening the Significant Hub Genes by Comparing Tumor Cells, Normoxic and Hypoxic Glioblastoma Stem-like Cell Lines Using Co-Expression Analysis in Glioblastoma. PMID:35328072
Positively selected genes in the hoary bat (Lasiurus cinereus) lineage: prominence of thymus expression, immune and metabolic function, and regions of ancient synteny. PMID:35317076
Transcriptome Analysis of Bovine Rumen Tissue in Three Developmental Stages. PMID:35309117
Prediction of the Active Components and Possible Targets of Xanthii Fructus Based on Network Pharmacology for Use in Chronic Rhinosinusitis. PMID:35287308
The core and accessory Hfq interactomes across Pseudomonas aeruginosa lineages. PMID:35273147
Activation of cryptic xylose metabolism by a transcriptional activator Znf1 boosts up xylitol production in the engineered Saccharomyces cerevisiae lacking xylose suppressor BUD21 gene. PMID:35248023
Transcriptomic modulation in response to high-intensity interval training in monocytes of older women with type 2 diabetes. PMID:35182182
The molecular mechanism of kinesin family member 2A (KIF2A) underlying non-small cell lung cancer: the effect of its knockdown on malignant behaviors, stemness, chemosensitivity, and potential regulated signaling pathways. PMID:35173830
Uncovering the Potential Mechanisms of Coptis chinensis Franch. for Serious Mental Illness by Network Pharmacology and Pharmacology-Based Analysis. PMID:35173416
Time-course RNA-seq analysis reveals stage-specific and melatonin-triggered gene expression patterns during the hair follicle growth cycle in Capra hircus. PMID:35172715
MonaGO: a novel gene ontology enrichment analysis visualisation system. PMID:35164667
Label-Free Quantitative Proteomics to Explore the Action Mechanism of the Pharmaceutical-Grade Triticum vulgare Extract in Speeding Up Keratinocyte Healing. PMID:35164377
Study on the Active Constituents and Molecular Mechanism of Zhishi Xiebai Guizhi Decoction in the Treatment of CHD Based on UPLC-UESI-Q Exactive Focus, Gene Expression Profiling, Network Pharmacology, and Experimental Validation. PMID:35155889
Network Pharmacology and Molecular Docking-Based Mechanism Study to Reveal the Protective Effect of Salvianolic Acid C in a Rat Model of Ischemic Stroke. PMID:35153756
Overexpression and mutation of ZNF384 is associated with favorable prognosis in breast cancer patients. PMID:35116816
Prognostic value and potential molecular mechanism of the like-Sm gene family in early-stage pancreatic ductal adenocarcinoma. PMID:35116499
Reduced chromatin accessibility to CD4 T cell super-enhancers encompassing susceptibility loci of rheumatoid arthritis. PMID:35085847
Glial immune-related pathways mediate effects of closed head traumatic brain injury on behavior and lethality in Drosophila. PMID:35081110
TAF4b transcription networks regulating early oocyte differentiation. PMID:35043944
Abnormal 5-methylcytosine lncRNA methylome is involved in human high-grade serous ovarian cancer. PMID:35035702
Developmental nicotine exposure and masculinization of the rat preoptic area. PMID:35026373
Potential biomarkers and signaling pathways associated with the pathogenesis of primary salivary gland carcinoma: a bioinformatics study. PMID:35012286
Cellular Processes in Human Ovarian Follicles Are Regulated by Expression Profile of New Gene Markers-Clinical Approach. PMID:35011815
Development of Potential Prognostic Biomarkers Based on DNA Methylation-Driven Genes for Patients with Endometrial Cancer. PMID:35002309
AKIP1 promotes tumor progression by cancer-related pathways and predicts prognosis in tongue squamous cell carcinoma. PMID:34956456
Impact of Qi-Invigorating Traditional Chinese Medicines on Diffuse Large B Cell Lymphoma Based on Network Pharmacology and Experimental Validation. PMID:34955857
Associations of Serum Tumor Biomarkers with Integrated Genomic and Clinical Characteristics of Hepatocellular Carcinoma. PMID:34950182
Identification of Potential Genetic Biomarkers and Target Genes of Peri-Implantitis Using Bioinformatics Tools. PMID:34931168
Long-term adaptation following influenza A virus host shifts results in increased within-host viral fitness due to higher replication rates, broader dissemination within the respiratory epithelium and reduced tissue damage. PMID:34919598
Genome-wide expression of the residual lung reacting to experimental Pneumonectomy. PMID:34872491
A proteomic atlas of ligand-receptor interactions at the ovine maternal-fetal interface reveals the role of histone lactylation in uterine remodeling. PMID:34861240
Identifying the Effect of Ursolic Acid Against Triple-Negative Breast Cancer: Coupling Network Pharmacology With Experiments Verification. PMID:34858165
Diversity and molecular network patterns of symptom phenotypes. PMID:34848731
Matrix Metalloproteinases Inhibition by Doxycycline Rescues Extracellular Matrix Organization and Partly Reverts Myofibroblast Differentiation in Hypermobile Ehlers-Danlos Syndrome Dermal Fibroblasts: A Potential Therapeutic Target? PMID:34831458
Dietary essential amino acids restore liver metabolism in ovariectomized mice via hepatic estrogen receptor α. PMID:34824281
Genome-wide DNA methylation analysis of pulmonary function in middle and old-aged Chinese monozygotic twins. PMID:34809630
Loss of MBD2 attenuates MLL-AF9-driven leukemogenesis by suppressing the leukemic cell cycle via CDKN1C. PMID:34789717
Bioinformatic analysis of key pathways and genes shared between endometriosis and ovarian cancer. PMID:34727222
Determination of the two-component systems regulatory network reveals core and accessory regulations across Pseudomonas aeruginosa lineages. PMID:34718721
Integrated Small RNA Sequencing, Transcriptome and GWAS Data Reveal microRNA Regulation in Response to Milk Protein Traits in Chinese Holstein Cattle. PMID:34712266
DNA Methylation Level Changes in Transgenic Chinese Cabbage (Brassica rapa ssp. pekinensis) Plants and Their Effects on Corresponding Gene Expression Patterns. PMID:34680957
Yeast metabolic innovations emerged via expanded metabolic network and gene positive selection. PMID:34676984
Screening and predicted value of potential biomarkers for breast cancer using bioinformatics analysis. PMID:34675265
Analysis of Methylation-driven Genes in Pancreatic Ductal Adenocarcinoma for Predicting Prognosis. PMID:34659542
Chronic liquid fructose supplementation does not cause liver tumorigenesis but elicits clear sex differences in the metabolic response in Sprague-Dawley rats. PMID:34650394
Resveratrol enhanced mitochondrial recovery from cryopreservation-induced damages in oocytes and embryos. PMID:34646069
Cancer cell immune mimicry delineates onco-immunologic modulation. PMID:34632332
Integrative Predictive Modeling of Metastasis in Melanoma Cancer Based on MicroRNA, mRNA, and DNA Methylation Data. PMID:34631789
Suppression of Cell Tumorigenicity by Non-neural Pro-differentiation Factors via Inhibition of Neural Property in Tumorigenic Cells. PMID:34595169
CG7379 and ING1 suppress cancer cell invasion by maintaining cell-cell junction integrity. PMID:34493070
A pan-cancer analysis of the prognostic and immunological role of β-actin (ACTB) in human cancers. PMID:34486492
Transcriptomic Analyses Reveal B-Cell Translocation Gene 2 as a Potential Therapeutic Target in Ovarian Cancer. PMID:34485119
The Identification of the Metabolism Subtypes of Skin Cutaneous Melanoma Associated With the Tumor Microenvironment and the Immunotherapy. PMID:34458265
Discovery of Novel Host Molecular Factors Underlying HBV/HCV Infection. PMID:34458256
Comprehensive analysis of differentially expressed genes reveals the promotive effects of UBE2T on colorectal cancer cell proliferation. PMID:34457069
GNAi2/gip2-Regulated Transcriptome and Its Therapeutic Significance in Ovarian Cancer. PMID:34439877
Identification of GNA12-driven gene signatures and key signaling networks in ovarian cancer. PMID:34429759
Identification of Potential Bioactive Ingredients and Mechanisms of the Guanxin Suhe Pill on Angina Pectoris by Integrating Network Pharmacology and Molecular Docking. PMID:34422068
Examination of CA1 Hippocampal DNA Methylation as a Mechanism for Closing of Estrogen's Critical Window. PMID:34421577
Identification of significant alteration genes, pathways and TFs induced by LPS in ARDS via bioinformatical analysis. PMID:34418997
Bioinformatics analysis of the transcriptional expression of minichromosome maintenance proteins as potential indicators of survival in patients with cervical cancer. PMID:34404366
Loss of N1-methylation of G37 in tRNA induces ribosome stalling and reprograms gene expression. PMID:34382933
A Novel miRNA-mRNA Axis Involves in Regulating Transcriptional Disorders in Pancreatic Adenocarcinoma. PMID:34377019
Protective effects of andrographolide against cerebral ischemia‑reperfusion injury in mice. PMID:34368862
Analyzing Roles of NUSAP1 From Clinical, Molecular Mechanism and Immune Perspectives in Hepatocellular Carcinoma. PMID:34354737
Proprotein convertase subtilisin/kexin Type 9 is required for Ahnak-mediated metastasis of melanoma into lung epithelial cells. PMID:34352405
A Network Pharmacology Approach to Investigate the Mechanism of Erjing Prescription in Type 2 Diabetes. PMID:34349832
Expression and Clinical Significance of Lactate Dehydrogenase A in Colon Adenocarcinoma. PMID:34307169
Exploring Differentially Methylated Genes in Vulvar Squamous Cell Carcinoma. PMID:34298793
microRNAs and Gene-Environment Interactions in Autism: Effects of Prenatal Maternal Stress and the SERT Gene on Maternal microRNA Expression. PMID:34290629
Identification of genes associated with sudden cardiac death: a network- and pathway-based approach. PMID:34277054
Bioinformatics Analysis of Expression Profiles and Prognostic Values of the Signal Transducer and Activator of Transcription Family Genes in Glioma. PMID:34276757
The HIF target MAFF promotes tumor invasion and metastasis through IL11 and STAT3 signaling. PMID:34262028
Identification and Comparative Analysis of Long Non-coding RNAs in High- and Low-Fecundity Goat Ovaries During Estrus. PMID:34249080
A DNA methylation profile of long non-coding RNAs can predict OS in prostate cancer. PMID:34238128
Tumor Purity Coexpressed Genes Related to Immune Microenvironment and Clinical Outcomes of Lung Adenocarcinoma. PMID:34234827
Analysis of merged whole blood transcriptomic datasets to identify circulating molecular biomarkers of feed efficiency in growing pigs. PMID:34217223
Identification of MicroRNAs as Viable Aggressiveness Biomarkers for Prostate Cancer. PMID:34198846
KRT7 Overexpression is Associated with Poor Prognosis and Immune Cell Infiltration in Patients with Pancreatic Adenocarcinoma. PMID:34188523
Bioinformatics analysis of differentially expressed genes and pathways in the development of cervical cancer. PMID:34174849
FINER: enhancing the prediction of tissue-specific functions of isoforms by refining isoform interaction networks. PMID:34169280
An Immune-Related Signature Predicted Survival in Patients With Kidney Papillary Cell Carcinoma. PMID:34164341
lncRNA GAS6-AS1 inhibits progression and glucose metabolism reprogramming in LUAD via repressing E2F1-mediated transcription of GLUT1. PMID:34141461
Characterization of terminal-ileal and colonic Crohn's disease in treatment-naïve paediatric patients based on transcriptomic profile using logistic regression. PMID:34098982
Development and Validation of a 7-Gene Prognostic Signature to Improve Survival Prediction in Pancreatic Ductal Adenocarcinoma. PMID:34095229
Transcriptome wide analysis of long non-coding RNA-associated ceRNA regulatory circuits in psoriasis. PMID:34080300
Cell-Cell Communication at the Embryo Implantation Site of Mouse Uterus Revealed by Single-Cell Analysis. PMID:34068395
Analysis of selection signatures on the Z chromosome of bidirectional selection broiler lines for the assessment of abdominal fat content. PMID:34058970
Bioinformatics-based Identification of Key Pathways and Hub Genes of Traumatic Brain Injury in a Rat Model. PMID:34047944
Population genomics of invasive rodents on islands: Genetic consequences of colonization and prospects for localized synthetic gene drive. PMID:34025776
Housekeeping genes involved in non-malignant breast phenotypes are widely expressed in multiple cancers and provide novel biomarkers of tumor classification. PMID:34008752
Cannabinoids orchestrate cross-talk between cancer cells and endothelial cells in colorectal cancer. PMID:34007062
Functional Genomic and Biochemical Analysis Reveals Pleiotropic Effect of Congo Red on Aspergillus fumigatus. PMID:34006660
Balloon cells promote immune system activation in focal cortical dysplasia type 2b. PMID:34003514
An EMT-Related Gene Signature for Predicting Response to Adjuvant Chemotherapy in Pancreatic Ductal Adenocarcinoma. PMID:33996821
Serum Cytokine Profiling Identifies Axl as a New Biomarker Candidate for Active Eosinophilic Granulomatosis With Polyangiitis. PMID:33987203
What are the applications of single-cell RNA sequencing in cancer research: a systematic review. PMID:33975628
Investigation of circRNA-miRNA-mRNA network in colorectal cancer using an integrative bioinformatics approach. PMID:33968341
Significances of viable synergistic autophagy-associated cathepsin B and cathepsin D (CTSB/CTSD) as potential biomarkers for sudden cardiac death. PMID:33964876
NSMF promotes the replication stress-induced DNA damage response for genome maintenance. PMID:33963872
Identification of seven tumor-educated platelets RNAs for cancer diagnosis. PMID:33955587
The Type and Source of Reactive Oxygen Species Influences the Outcome of Oxidative Stress in Cultured Cells. PMID:33946545
Weight loss after Roux-En-Y gastric bypass surgery reveals skeletal muscle DNA methylation changes. PMID:33933146
A Comprehensive Urine Proteome Database Generated From Patients With Various Renal Conditions and Prostate Cancer. PMID:33928097
Computational Identification of Sex-Biased Biomarker MicroRNAs and Genes Associated with Immune Infiltration in Breast Cancer. PMID:33919884
Human Amniotic Epithelial Cells as a Tool to Investigate the Effects of Cyanidin 3-O-Glucoside on Cell Differentiation. PMID:33916494
Single-Cell RNA Sequencing in Parkinson's Disease. PMID:33916045
Gene expression analysis of MCF7 cell lines of breast cancer treated with herbal extract of Cissampelos pareira revealed association with viral diseases. PMID:33907720
Astrocyte-specific expression of interleukin 23 leads to an aggravated phenotype and enhanced inflammatory response with B cell accumulation in the EAE model. PMID:33906683
Prognostic biomarkers and therapeutic targets in oral squamous cell carcinoma: a study based on cross-database analysis. PMID:33892811
Bioinformatics analysis of mRNA and miRNA microarray to identify the key miRNA-mRNA pairs in cisplatin-resistant ovarian cancer. PMID:33892654
Association between follicular fluid phthalate concentrations and extracellular vesicle microRNAs expression. PMID:33885134
The role of circular RNA circ_0008285 in gestational diabetes mellitus by regulating the biological functions of trophoblasts. PMID:33879262
Analysis of differences in the transcriptomic profiles of eutopic and ectopic endometriums in women with ovarian endometriosis. PMID:33868805
Extra virgin olive oil improved body weight and insulin sensitivity in high fat diet-induced obese LDLr-/-.Leiden mice without attenuation of steatohepatitis. PMID:33859314
Popularity and performance of bioinformatics software: the case of gene set analysis. PMID:33858350
Nuclear factor IB is downregulated in vulvar squamous cell carcinoma (VSCC): Unravelling differentially expressed genes in VSCC through gene expression dataset analysis. PMID:33841565
The Exploration of Novel Pharmacophore Characteristics and Multidirectional Elucidation of Structure-Activity Relationship and Mechanism of Sesquiterpene Pyridine Alkaloids from Tripterygium Based on Computational Approaches. PMID:33833819
Human adipose-derived stem cells promote seawater-immersed wound healing via proangiogenic effects. PMID:33819183
Urinary Exosomes Identify Inflammatory Pathways in Vancomycin Associated Acute Kidney Injury. PMID:33801801
miRCOVID-19: Potential Targets of Human miRNAs in SARS-CoV-2 for RNA-Based Drug Discovery. PMID:33801496
Cuprizone and EAE mouse frontal cortex proteomics revealed proteins altered in multiple sclerosis. PMID:33785790
Glycolysis reprogramming in cancer-associated fibroblasts promotes the growth of oral cancer through the lncRNA H19/miR-675-5p/PFKFB3 signaling pathway. PMID:33762576
FAM83A and FAM83A-AS1 both play oncogenic roles in lung adenocarcinoma. PMID:33732373
Determining the influence of high glucose on exosomal lncRNAs, mRNAs, circRNAs and miRNAs derived from human renal tubular epithelial cells. PMID:33714195
Soluble ACE2-mediated cell entry of SARS-CoV-2 via interaction with proteins related to the renin-angiotensin system. PMID:33713620
New Gene Markers Expressed in Porcine Oviductal Epithelial Cells Cultured Primary In Vitro Are Involved in Ontological Groups Representing Physiological Processes of Porcine Oocytes. PMID:33669854
An Integrative Pharmacology-Based Pattern to Uncover the Pharmacological Mechanism of Ginsenoside H Dripping Pills in the Treatment of Depression. PMID:33658934
Linking clinotypes to phenotypes and genotypes from laboratory test results in comprehensive physical exams. PMID:33627109
Genomic pan-cancer classification using image-based deep learning. PMID:33598099
Aspergillus fumigatus Strain-Specific Conidia Lung Persistence Causes an Allergic Broncho-Pulmonary Aspergillosis-Like Disease Phenotype. PMID:33597172
Genome-scale meta-analysis of breast cancer datasets identifies promising targets for drug development. PMID:33593445
Catalpol Protects Against Pulmonary Fibrosis Through Inhibiting TGF-β1/Smad3 and Wnt/β-Catenin Signaling Pathways. PMID:33584272
Global Transcriptional Response of Methylorubrum extorquens to Formaldehyde Stress Expands the Role of EfgA and Is Distinct from Antibiotic Translational Inhibition. PMID:33578755
Comprehensively Analyzed Macrophage-Regulated Genes Indicate That PSMA2 Promotes Colorectal Cancer Progression. PMID:33537240
Myeloid-derived suppressor cell (MDSC) key genes analysis in rat anti-CD28-induced immune tolerance kidney transplantation. PMID:33532310
Systemic pharmacological investigation of the Feng Shi Gu Tong capsule in the treatment of rheumatoid arthritis. PMID:33527195
Aneuploidy renders cancer cells vulnerable to mitotic checkpoint inhibition. PMID:33505028
A meta-analysis of comorbidities in COVID-19: Which diseases increase the susceptibility of SARS-CoV-2 infection? PMID:33486379
The Ubiquitin E3 Ligase TRIM21 Promotes Hepatocarcinogenesis by Suppressing the p62-Keap1-Nrf2 Antioxidant Pathway. PMID:33482392
Comprehensive Analysis of Cardiac Xeno-Graft Unveils Rejection Mechanisms. PMID:33451076
Systems Pharmacology-Based Identification of Mechanisms of Action of Bolbostemma paniculatum for the Treatment of Hepatocellular Carcinoma. PMID:33436534
The histone methyltransferase inhibitor A-366 enhances hemoglobin expression in erythroleukemia cells upon co-exposure with chemical inducers in culture. PMID:33407944
RNA sequencing analyses reveal differentially expressed genes and pathways as Notch2 targets in B-cell lymphoma. PMID:33400727
Direct conversion of osteosarcoma to adipocytes by targeting TNIK. PMID:33400690
Automated Isoform Diversity Detector (AIDD): a pipeline for investigating transcriptome diversity of RNA-seq data. PMID:33375933
Transcriptomic and Morphological Analysis of Cells Derived from Porcine Buccal Mucosa-Studies on an In Vitro Model. PMID:33374146
Traditional Chinese medicine network pharmacology study on exploring the mechanism of Xuebijing Injection in the treatment of coronavirus disease 2019. PMID:33357725
Essential interpretations of bioinformatics in COVID-19 pandemic. PMID:33349792
Tumors Widely Express Hundreds of Embryonic Germline Genes. PMID:33348709
Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylation in the Phytopathogenic Fungus Botrytis cinerea. PMID:33329453
mRNA spindle localization and mitotic translational regulation by CPEB1 and CPEB4. PMID:33323527
Development of a prognostic signature for bladder cancer based on immune-related genes. PMID:33313125
AVIA 3.0: interactive portal for genomic variant and sample level analysis. PMID:33289511
Fifteen Years of Gene Set Analysis for High-Throughput Genomic Data: A Review of Statistical Approaches and Future Challenges. PMID:33286201
SITC cancer immunotherapy resource document: a compass in the land of biomarker discovery. PMID:33268350
Cannabidiol enhances cytotoxicity of anti-cancer drugs in human head and neck squamous cell carcinoma. PMID:33244087
Bioinformatics Analysis Identifies a Novel Role of GINS1 Gene in Colorectal Cancer. PMID:33235499
Identification of Differential Gene Groups From Single-Cell Transcriptomes Using Network Entropy. PMID:33195248
Integrated Analysis of a Risk Score System Predicting Prognosis and a ceRNA Network for Differentially Expressed lncRNAs in Multiple Myeloma. PMID:33193574
Identification of Immune Cell Infiltration and Immune-Related Genes in the Tumor Microenvironment of Glioblastomas. PMID:33193404
Reconstitution of prospermatogonial specification in vitro from human induced pluripotent stem cells. PMID:33168808
Transcriptomic analysis of the liver in aged laying hens with different intensity of brown eggshell color. PMID:33152221
Chinese Medicine Huzhen Tongfeng Formula Effectively Attenuates Gouty Arthritis by Inhibiting Arachidonic Acid Metabolism and Inflammatory Mediators. PMID:33132756
A signature of 18 immune-related gene pairs to predict the prognosis of pancreatic cancer patients. PMID:33128857
Integration of gene profile to explore the hub genes of lung adenocarcinoma: A quasi-experimental study. PMID:33120770
Cross-talk between the ER pathway and the lncRNA MAFG-AS1/miR-339-5p/ CDK2 axis promotes progression of ER+ breast cancer and confers tamoxifen resistance. PMID:33098638
Predicting Drug Response and Synergy Using a Deep Learning Model of Human Cancer Cells. PMID:33096023
Comparative phenotypic and transcriptomic analysis of Victoria and flame seedless grape cultivars during berry ripening. PMID:33090714
IL-4-BATF signaling directly modulates IL-9 producing mucosal mast cell (MMC9) function in experimental food allergy. PMID:33069715
Screening of autophagy genes as prognostic indicators for glioma patients. PMID:33042422
Identification of Key Genes in Gastric Cancer by Bioinformatics Analysis. PMID:33015179
C3: connect separate connected components to form a succinct disease module. PMID:33008305
Pleiotropic Roles of VEGF in the Microenvironment of the Developing Thymus. PMID:32989093
Transcriptomic Analyses of Myeloid-Derived Suppressor Cell Subsets in the Circulation of Colorectal Cancer Patients. PMID:32984004
Berberine Improves Inflammatory Responses of Diabetes Mellitus in Zucker Diabetic Fatty Rats and Insulin-Resistant HepG2 Cells through the PPM1B Pathway. PMID:32908938
Identification of dysregulated miRNAs-genes network in ovarian cancer: An integrative approach to uncover the molecular interactions and oncomechanisms. PMID:32886452
Digging into the Genomic Past of Swiss Honey Bees by Whole-Genome Sequencing Museum Specimens. PMID:32877519
LILRB3 (ILT5) is a myeloid cell checkpoint that elicits profound immunomodulation. PMID:32870822
Investigating Cell Signaling with Gene Expression Datasets. PMID:32855998
MNX1 Promotes Malignant Progression of Cervical Cancer via Repressing the Transcription of p21cip1. PMID:32850410
Redefining Tumor-Associated Macrophage Subpopulations and Functions in the Tumor Microenvironment. PMID:32849616
The Orphan G-Protein Coupled Receptor 182 Is a Negative Regulator of Definitive Hematopoiesis through Leukotriene B4 Signaling. PMID:32832870
Comparative Analysis of Mouse Decidualization Models at the Molecular Level. PMID:32823685
Canonical Wnt Pathway Controls mESC Self-Renewal Through Inhibition of Spontaneous Differentiation via β-Catenin/TCF/LEF Functions. PMID:32822589
Epigenetic Changes in Islets of Langerhans Preceding the Onset of Diabetes. PMID:32816961
RNA-Seq reveals placental growth factor regulates the human retinal endothelial cell barrier integrity by transforming growth factor (TGF-β) signaling. PMID:32813141
Environmental gradients of selection for an alpine-obligate bird, the white-tailed ptarmigan (Lagopus leucura). PMID:32807852
Identification of prognostic biomarkers associated with stromal cell infiltration in muscle-invasive bladder cancer by bioinformatics analyses. PMID:32786144
Construction and Analysis of Competing Endogenous RNA Networks for Breast Cancer Based on TCGA Dataset. PMID:32775417
Predicting new drug indications for prostate cancer: The integration of an in silico proteochemometric network pharmacology platform with patient-derived primary prostate cells. PMID:32761925
Mice deficient in UXT exhibit retinitis pigmentosa-like features via aberrant autophagy activation. PMID:32744119
Identification of a Six-Immune-Related Long Non-coding RNA Signature for Predicting Survival and Immune Infiltrating Status in Breast Cancer. PMID:32733537
Lysocardiolipin acyltransferase regulates NSCLC cell proliferation and migration by modulating mitochondrial dynamics. PMID:32732285
Eukaryote-Conserved Methylarginine Is Absent in Diplomonads and Functionally Compensated in Giardia. PMID:32702104
Alternative methylation of intron motifs is associated with cancer-related gene expression in both canine mammary tumor and human breast cancer. PMID:32693820
Systematic Characterization of Recurrent Genomic Alterations in Cyclin-Dependent Kinases Reveals Potential Therapeutic Strategies for Cancer Treatment. PMID:32668240
Omega-3 Phospholipids from Krill Oil Enhance Intestinal Fatty Acid Oxidation More Effectively than Omega-3 Triacylglycerols in High-Fat Diet-Fed Obese Mice. PMID:32660007
The Pre-Implantation Embryo Induces Uterine Inflammatory Reaction in Mice. PMID:32651899
Underlying Mechanism of Insulin Resistance: A Bioinformatics Analysis Based on Validated Related-Genes from Public Disease Databases. PMID:32651353
Blockade of PD-1, PD-L1, and TIM-3 Altered Distinct Immune- and Cancer-Related Signaling Pathways in the Transcriptome of Human Breast Cancer Explants. PMID:32616706
Proteomic and Phosphoproteomic Maps of Lung Squamous Cell Carcinoma From Chinese Patients. PMID:32612956
IGAP-integrative genome analysis pipeline reveals new gene regulatory model associated with nonspecific TF-DNA binding affinity. PMID:32612751
Comparative Pathway Integrator: A Framework of Meta-Analytic Integration of Multiple Transcriptomic Studies for Consensual and Differential Pathway Analysis. PMID:32599927
Bioinformatics analysis of prognosis-related long non-coding RNAs in invasive breast carcinoma. PMID:32565939
Prognostic prediction of a 12-methylation gene-based risk score system on pancreatic adenocarcinoma. PMID:32565937
A comprehensive map of disease networks and molecular drug discoveries for glaucoma. PMID:32546683
Genome wide meta-analysis of cDNA datasets reveals new target gene signatures of colorectal cancer based on systems biology approach. PMID:32523911
Long non-coding RNA MVIH promotes cell proliferation, migration, invasion through regulating multiple cancer-related pathways, and correlates with worse prognosis in pancreatic ductal adenocarcinomas. PMID:32509206
Identification of feature risk pathways of smoking-induced lung cancer based on SVM. PMID:32497048
Transcriptome-Wide Analysis of CXCR5 Deficient Retinal Pigment Epithelial (RPE) Cells Reveals Molecular Signatures of RPE Homeostasis. PMID:32492870
The synergistic antitumour effect of multi-components from Pulsatilla chinensis saponins in NCI-H460 lung cancer cell line through induction of apoptosis. PMID:32476531
Potential dual functional roles of the Y-linked RBMY in hepatocarcinogenesis. PMID:32473614
Concentration-dependent toxicogenomic changes of silver nanoparticles in hepatocyte-like cells derived from human induced pluripotent stem cells. PMID:32447489
Positive transcriptional response on inflammation and joint remodelling influenced by physical exercise in proteoglycan-induced arthritis: An animal study. PMID:32435454
Comprehensive transcriptomic analysis identifies novel regulators of lung adenocarcinoma. PMID:32415511
Identification and validation of hub microRNAs dysregulated in esophageal squamous cell carcinoma. PMID:32412911
Analysis of potential hub genes involved in the pathogenesis of Chinese type 1 diabetic patients. PMID:32355739
Role of RP11-83J16.1, a novel long non-coding RNA, in rheumatoid arthritis. PMID:32355550
Proteomic Profiling of Colon Cancer Tissues: Discovery of New Candidate Biomarkers. PMID:32353950
Polymorphisms in miRNA binding sites involved in metabolic diseases in mice and humans. PMID:32350386
The H2B ubiquitin-protein ligase RNF40 is required for somatic cell reprogramming. PMID:32341358
Role of the ADCY9 gene in cardiac abnormalities of the Rubinstein-Taybi syndrome. PMID:32321550
Expression of genes involved in neurogenesis, and neuronal precursor cell proliferation and development: Novel pathways of human ovarian granulosa cell differentiation and transdifferentiation capability in vitro. PMID:32319615
Transcriptome sequencing reveals dynamic changes in matrix metalloproteinases in facet joint osteoarthritis. PMID:32256724
Cleft lip and cleft palate in Esrp1 knockout mice is associated with alterations in epithelial-mesenchymal crosstalk. PMID:32253237
Identification of novel biomarkers in ischemic stroke: a genome-wide integrated analysis. PMID:32228489
Integrative differential expression and gene set enrichment analysis using summary statistics for scRNA-seq studies. PMID:32221292
Potential mechanisms and serum biomarkers involved in sex differences in pulmonary arterial hypertension. PMID:32221085
De Novo Frameshift Variants in the Neuronal Splicing Factor NOVA2 Result in a Common C-Terminal Extension and Cause a Severe Form of Neurodevelopmental Disorder. PMID:32197073
Identification of crucial genes and pathways associated with colorectal cancer by bioinformatics analysis. PMID:32194683
Comparison of Adult Testis and Ovary MicroRNA Expression Profiles in Reeves' Pond Turtles (Mauremys reevesii) With Temperature-Dependent Sex Determination. PMID:32194623
Piezo1/2 mediate mechanotransduction essential for bone formation through concerted activation of NFAT-YAP1-ß-catenin. PMID:32186512
OX40+ plasmacytoid dendritic cells in the tumor microenvironment promote antitumor immunity. PMID:32182225
Pituitary-Derived Circular RNAs Expression and Regulatory Network Prediction During the Onset of Puberty in Landrace × Yorkshire Crossbred Pigs. PMID:32180798
MicroRNA hsa-mir-3923 serves as a diagnostic and prognostic biomarker for gastric carcinoma. PMID:32170105
Transcriptional regulators and regulatory pathways involved in prostate gland adaptation to a hypoandrogen environment. PMID:32159609
Edgetic perturbation signatures represent known and novel cancer biomarkers. PMID:32152446
Notch ligand Dll4 impairs cell recruitment to aortic clusters and limits blood stem cell generation. PMID:32149421
Evolutionary and Molecular Characterization of liver-enriched gene 1. PMID:32144352
Primary tumors release ITGBL1-rich extracellular vesicles to promote distal metastatic tumor growth through fibroblast-niche formation. PMID:32139701
Novel myocardial markers GADD45G and NDUFS5 identified by RNA-sequencing predicts left ventricular reverse remodeling in advanced non-ischemic heart failure: a retrospective cohort study. PMID:32138671
CDK1 and CDC20 overexpression in patients with colorectal cancer are associated with poor prognosis: evidence from integrated bioinformatics analysis. PMID:32127012
Identification of a Modified HOXB9 mRNA in Breast Cancer. PMID:32104178
Novel Hemizygous IL2RG p.(Pro58Ser) Mutation Impairs IL-2 Receptor Complex Expression on Lymphocytes Causing X-Linked Combined Immunodeficiency. PMID:32072341
The application of weighted gene co-expression network analysis in identifying key modules and hub genes associated with disease status in Alzheimer's disease. PMID:32042816
DNA methylation signature on phosphatidylethanol, not on self-reported alcohol consumption, predicts hazardous alcohol consumption in two distinct populations. PMID:32034291
RNA-Seq reveals differential expression profiles and functional annotation of genes involved in retinal degeneration in Pde6c mutant Danio rerio. PMID:32033529
Potential Prognostic and Diagnostic Values of CDC6, CDC45, ORC6 and SNHG7 in Colorectal Cancer. PMID:32021241
Exploring the Key Genes and Pathways in the Formation of Corneal Scar Using Bioinformatics Analysis. PMID:32016117
Screening and Identifying Immune-Related Cells and Genes in the Tumor Microenvironment of Bladder Urothelial Carcinoma: Based on TCGA Database and Bioinformatics. PMID:32010623
TriPCE: A Novel Tri-Clustering Algorithm for Identifying Pan-Cancer Epigenetic Patterns. PMID:32010182
Whole-transcriptome sequencing uncovers core regulatory modules and gene signatures of human fetal growth restriction. PMID:31993806
High Glucose Induces Mesangial Cell Apoptosis through miR-15b-5p and Promotes Diabetic Nephropathy by Extracellular Vesicle Delivery. PMID:31991106
Estrogen/estrogen receptor promotes the proliferation of endometrial carcinoma cells by enhancing hMOF expression. PMID:31990345
The proteome of IVF-induced aberrant embryo-maternal crosstalk by implantation stage in ewes. PMID:31956410
Maximizing the ovarian reserve in mice by evading LINE-1 genotoxicity. PMID:31949138
Transcriptomic profiling disclosed the role of DNA methylation and histone modifications in tumor-infiltrating myeloid-derived suppressor cell subsets in colorectal cancer. PMID:31941522
Overexpression of GSDMC is a prognostic factor for predicting a poor outcome in lung adenocarcinoma. PMID:31939622
Identification and characterization of miRNAs involved in cold acclimation of zebrafish ZF4 cells. PMID:31923196
Transcriptomic Validation of the Protective Effects of Aqueous Bark Extract of Terminalia arjuna (Roxb.) on Isoproterenol-Induced Cardiac Hypertrophy in Rats. PMID:31920643
PTPN21 Overexpression Promotes Osteogenic and Adipogenic Differentiation of Bone Marrow-Derived Mesenchymal Stem Cells but Inhibits the Immunosuppressive Function. PMID:31885609
Genome-wide global identification of NRF2 binding sites in A549 non-small cell lung cancer cells by ChIP-Seq reveals NRF2 regulation of genes involved in focal adhesion pathways. PMID:31884422
A robustness metric for biological data clustering algorithms. PMID:31874625
A novel CpG-based signature for survival prediction of lung adenocarcinoma patients. PMID:31853300
A pilot study comparing the genetic molecular biology of gestational and non-gestational choriocarcinoma. PMID:31814908
Identification of hub genes and key pathways associated with the progression of gynecological cancer. PMID:31788113
Analysis of lncRNA expression profiles by sequencing reveals that lnc-AL928768.3 and lnc-AC091493.1 are novel biomarkers for disease risk and activity of rheumatoid arthritis. PMID:31781981
A five-long non-coding RNA signature with the ability to predict overall survival of patients with lung adenocarcinoma. PMID:31777562
Epigenomic characterization of Clostridioides difficile finds a conserved DNA methyltransferase that mediates sporulation and pathogenesis. PMID:31768029
Exercise Exacerbates the Transcriptional Profile of Hypoxia, Oxidative Stress and Inflammation in Rats with Adjuvant-Induced Arthritis. PMID:31766745
Human Ovarian Granulosa Cells Isolated during an IVF Procedure Exhibit Differential Expression of Genes Regulating Cell Division and Mitotic Spindle Formation. PMID:31756998
A single factor dominates the behavior of rhythmic genes in mouse organs. PMID:31747875
Proteomic analysis for identifying the differences in molecular profiling between fanconi anaemia and aplastic anaemia. PMID:31737203
A human expression system based on HEK293 for the stable production of recombinant erythropoietin. PMID:31727983
Disparate responses to salinity across species and organizational levels in anchialine shrimps. PMID:31727759
Combined Omics Reveals That Disruption of the Selenocysteine Lyase Gene Affects Amino Acid Pathways in Mice. PMID:31717805
Novel markers of human ovarian granulosa cell differentiation toward osteoblast lineage: A microarray approach. PMID:31702034
Decoding the complexities of human malaria through systems immunology. PMID:31680289
Acetylome analysis of lysine acetylation in the plant pathogenic bacterium Brenneria nigrifluens. PMID:31677250
Targeting Novel Sodium Iodide Symporter Interactors ADP-Ribosylation Factor 4 and Valosin-Containing Protein Enhances Radioiodine Uptake. PMID:31672844
Human Papillomavirus 16 E5 Inhibits Interferon Signaling and Supports Episomal Viral Maintenance. PMID:31666385
Transcriptome Analysis Reveals That Alfalfa Promotes Rumen Development Through Enhanced Metabolic Processes and Calcium Transduction in Hu Lambs. PMID:31632445
Macrophages fine tune satellite cell fate in dystrophic skeletal muscle of mdx mice. PMID:31626629
Identification of SPP1 as an Extracellular Matrix Signature for Metastatic Castration-Resistant Prostate Cancer. PMID:31620371
Screening and identification of key biomarkers in lung squamous cell carcinoma by bioinformatics analysis. PMID:31612029
Differences in Expression of Genes Involved in Bone Development and Morphogenesis in the Walls of Internal Thoracic Artery and Saphenous Vein Conduits May Provide Markers Useful for Evaluation Graft Patency. PMID:31581653
Micro RNA Transcriptome Profile in Canine Oral Melanoma. PMID:31569419
Genome-Wide Association Study for Reproductive Traits in a Duroc Pig Population. PMID:31561612
SILAC Analysis Reveals Increased Secretion of Hemostasis-Related Factors by Senescent Cells. PMID:31553904
Comprehensive Profiles of mRNAs and miRNAs Reveal Molecular Characteristics of Multiple Organ Physiologies and Development in Pigs. PMID:31552085
Erxian Decoction Attenuates TNF-α Induced Osteoblast Apoptosis by Modulating the Akt/Nrf2/HO-1 Signaling Pathway. PMID:31551787
Computational identification of key genes that may regulate gene expression reprogramming in Alzheimer's patients. PMID:31545826
Deduction of Novel Genes Potentially Involved in the Effects of Very Low Dose Atropine (0.003%) Treatment on Corneal Epithelial Cells Using Next-Generation Sequencing and Bioinformatics Approaches. PMID:31540331
Co-expression network analysis identified hub genes critical to triglyceride and free fatty acid metabolism as key regulators of age-related vascular dysfunction in mice. PMID:31514170
A Low Iron Diet Protects from Steatohepatitis in a Mouse Model. PMID:31510077
Accelerating Medicines Partnership: Organizational Structure and Preliminary Data From the Phase 1 Studies of Lupus Nephritis. PMID:31502417
Integrative genomics analysis of hub genes and their relationship with prognosis and signaling pathways in esophageal squamous cell carcinoma. PMID:31485619
Signatures of adaptive divergence among populations of an avian species of conservation concern. PMID:31462921
Cyclophosphamide Enhances Cancer Antibody Immunotherapy in the Resistant Bone Marrow Niche by Modulating Macrophage FcγR Expression. PMID:31451483
Pseudogene Associated Recurrent Gene Fusion in Prostate Cancer. PMID:31446281
New Molecular Markers Involved in Regulation of Ovarian Granulosa Cell Morphogenesis, Development and Differentiation during Short-Term Primary In Vitro Culture-Transcriptomic and Histochemical Study Based on Ovaries and Individual Separated Follicles. PMID:31443152
FXYD5 (Dysadherin) upregulation predicts shorter survival and reveals platinum resistance in high-grade serous ovarian cancer patients. PMID:31434988
Clinical significance and prospective molecular mechanism of C‑C motif chemokine receptors in patients with early‑stage pancreatic ductal adenocarcinoma after pancreaticoduodenectomy. PMID:31432181
Exploration of the hub genes and miRNAs in lung adenocarcinoma. PMID:31423238
Rare De Novo Missense Variants in RNA Helicase DDX6 Cause Intellectual Disability and Dysmorphic Features and Lead to P-Body Defects and RNA Dysregulation. PMID:31422817
Secretomics to Discover Regulators in Diseases. PMID:31405033
Gene Fusions Derived by Transcriptional Readthrough are Driven by Segmental Duplication in Human. PMID:31400206
Mutations in the microRNA172 binding site of SUPERNUMERARY BRACT (SNB) suppress internode elongation in rice. PMID:31399805
A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism. PMID:31395883
Comprehensive analyses of long non-coding RNA expression profiles by RNA sequencing and exploration of their potency as biomarkers in psoriatic arthritis patients. PMID:31390976
Genome Analysis Reveals Genetic Admixture and Signature of Selection for Productivity and Environmental Traits in Iraqi Cattle. PMID:31379916
C-Jun drives melanoma progression in PTEN wild type melanoma cells. PMID:31378787
Regorafenib Prior to Selective Internal Radiation Therapy Using 90Y-Resin Microspheres for Refractory Metastatic Colorectal Cancer Liver Metastases: Analysis of Safety, Dosimetry, and Molecular Markers. PMID:31355141
Bioinformatics analysis of dysregulated microRNAs in exosomes from docetaxel-resistant and parental human breast cancer cells. PMID:31354350
Identification and Interaction Analysis of Key Genes and MicroRNAs in Systemic Sclerosis by Bioinformatics Approaches. PMID:31347003
Identification of Gene Changes Induced by Dexamethasone in the Anterior Segment of the Human Eye Using Bioinformatics Analysis. PMID:31339875
ScCobB2-mediated Lysine Desuccinylation Regulates Protein Biosynthesis and Carbon Metabolism in Streptomyces coelicolor. PMID:31337674
Bioinformatics-based discovery of PYGM and TNNC2 as potential biomarkers of head and neck squamous cell carcinoma. PMID:31324732
Zscan4c activates endogenous retrovirus MERVL and cleavage embryo genes. PMID:31304534
Transcriptomic Insights into the Response of the Olfactory Bulb to Selenium Treatment in a Mouse Model of Alzheimer's Disease. PMID:31248178
metaQuantome: An Integrated, Quantitative Metaproteomics Approach Reveals Connections Between Taxonomy and Protein Function in Complex Microbiomes. PMID:31235611
LTK is an ER-resident receptor tyrosine kinase that regulates secretion. PMID:31227593
Analysis of Genes Involved in Ulcerative Colitis Activity and Tumorigenesis Through Systematic Mining of Gene Co-expression Networks. PMID:31214045
RNA sequencing uncovers the key long non-coding RNAs and potential molecular mechanism contributing to XAV939-mediated inhibition of non-small cell lung cancer. PMID:31186710
Characterization of a prognostic four‑gene methylation signature associated with radiotherapy for head and neck squamous cell carcinoma. PMID:31180552
Multifaceted Stoichiometry Control of Bacterial Operons Revealed by Deep Proteome Quantification. PMID:31178895
A distal enhancer maintaining Hoxa1 expression orchestrates retinoic acid-induced early ESCs differentiation. PMID:31147716
Adipokinome Signatures in Obese Mouse Models Reflect Adipose Tissue Health and Are Associated with Serum Lipid Composition. PMID:31137678
Gene Expression Studies to Identify Significant Genes in AR, MTOR, MAPK Pathways and their Overlapping Regulatory Role in Prostate Cancer. PMID:31136301
Investigation of the clinical significance and prospective molecular mechanisms of cystatin genes in patients with hepatitis B virus‑related hepatocellular carcinoma. PMID:31115549
MALAT1 regulates the transcriptional and translational levels of proto-oncogene RUNX2 in colorectal cancer metastasis. PMID:31097689
Integrated analysis reveals potential long non-coding RNA biomarkers and their potential biological functions for disease free survival in gastric cancer patients. PMID:31080364
Human gut derived-organoids provide model to study gluten response and effects of microbiota-derived molecules in celiac disease. PMID:31065051
What Changed on the Folliculogenesis in the Process of Mouse Ovarian Aging? PMID:31058188
Uncovering changes in proteomic signature of rat pelvic floor muscles in pregnancy. PMID:31047881
PITX2 enhances progression of lung adenocarcinoma by transcriptionally regulating WNT3A and activating Wnt/β-catenin signaling pathway. PMID:31043858
Genome-wide DNA methylation analysis revealed stable DNA methylation status during decidualization in human endometrial stromal cells. PMID:31035926
Membrane proteomic analysis reveals overlapping and independent functions of Streptococcus mutans Ffh, YidC1, and YidC2. PMID:31034136
Genome-wide DNA methylation analysis in obese women predicts an epigenetic signature for future endometrial cancer. PMID:31015518
BRD9 defines a SWI/SNF sub-complex and constitutes a specific vulnerability in malignant rhabdoid tumors. PMID:31015438
A 19‑miRNA Support Vector Machine classifier and a 6‑miRNA risk score system designed for ovarian cancer patients. PMID:31002358
Novel microRNA, miR-sc6, modulates Schwann cell phenotype via targeting ErbB4. PMID:30988788
Gene Expression Profiles Associated with Brain Aging are Altered in Schizophrenia. PMID:30976116
The role of lateral pterygoid muscle in the traumatic temporomandibular joint ankylosis: A gene chip based analysis. PMID:30942403
Systematically Characterize the Anti-Alzheimer's Disease Mechanism of Lignans from S. chinensis based on In-Vivo Ingredient Analysis and Target-Network Pharmacology Strategy by UHPLC⁻Q-TOF-MS. PMID:30934777
Genome-wide DNA methylation differences according to oestrogen receptor beta status in colorectal cancer. PMID:30931802
High olive oil diets enhance cervical tumour growth in mice: transcriptome analysis for potential candidate genes and pathways. PMID:30922331
Loss of TP63 Promotes the Metastasis of Head and Neck Squamous Cell Carcinoma by Activating MAPK and STAT3 Signaling. PMID:30910837
Identification of Gene Expression Changes Associated With Uterine Receptivity in Mice. PMID:30890945
The Y-linked proto-oncogene TSPY contributes to poor prognosis of the male hepatocellular carcinoma patients by promoting the pro-oncogenic and suppressing the anti-oncogenic gene expression. PMID:30867900
Transcriptome Profiles of Human Visceral Adipocytes in Obesity and Colorectal Cancer Unravel the Effects of Body Mass Index and Polyunsaturated Fatty Acids on Genes and Biological Processes Related to Tumorigenesis. PMID:30838002
Systems based analysis of human embryos and gene networks involved in cell lineage allocation. PMID:30836937
Intestinal transcriptional profiling reveals fava bean-induced immune response in DBA/1 mice. PMID:30823938
Complications of whole-exome sequencing for causal gene discovery in primary platelet secretion defects. PMID:30819905
A synthetic non-histone substrate to study substrate targeting by the Gcn5 HAT and sirtuin HDACs. PMID:30804216
Genome-wide effect of pulmonary airway epithelial cell-specific Bmal1 deletion. PMID:30794439
Five-CpG-based prognostic signature for predicting survival in hepatocellular carcinoma patients. PMID:30766752
Specification of diverse cell types during early neurogenesis of the mouse cerebellum. PMID:30735127
Network Pharmacology Integrated Molecular Docking Reveals the Antiosteosarcoma Mechanism of Biochanin A. PMID:30723510
De Novo PITX1 Expression Controls Bi-Stable Transcriptional Circuits to Govern Self-Renewal and Differentiation in Squamous Cell Carcinoma. PMID:30713093
MiR-5571-3p and miR-135b-5p, derived from analyses of microRNA profile sequencing, correlate with increased disease risk and activity of rheumatoid arthritis. PMID:30707326
Gene fingerprint model for literature based detection of the associations among complex diseases: a case study of COPD. PMID:30700303
HDAC9 complex inhibition improves smooth muscle-dependent stenotic vascular disease. PMID:30674723
Lrp5 and Lrp6 are required for maintaining self-renewal and differentiation of hematopoietic stem cells. PMID:30668923
Identification of differentially expressed genes and enriched pathways in lung cancer using bioinformatics analysis. PMID:30664219
Resveratrol and Its Human Metabolites-Effects on Metabolic Health and Obesity. PMID:30641865
'Heart development and morphogenesis' is a novel pathway for human ovarian granulosa cell differentiation during long‑term in vitro cultivation‑a microarray approach. PMID:30628715
A miRNA Host Response Signature Accurately Discriminates Acute Respiratory Infection Etiologies. PMID:30619110
RNA-seq analysis of hepatic gene expression of common Pekin, Muscovy, mule and hinny ducks fed ad libitum or overfed. PMID:30616512
Transcriptomic analyses identify key differentially expressed genes and clinical outcomes between triple-negative and non-triple-negative breast cancer. PMID:30613165
Transcriptome analysis of differentially expressed genes and pathways associated with mitoxantrone treatment prostate cancer. PMID:30592148
Identification of myosin II as a cripto binding protein and regulator of cripto function in stem cells and tissue regeneration. PMID:30579599
Network-Guided Discovery of Influenza Virus Replication Host Factors. PMID:30563907
Several genes involved in the JAK-STAT pathway may act as prognostic markers in pancreatic cancer identified by microarray data analysis. PMID:30557977
Genomics of neonatal sepsis: has-miR-150 targeting BCL11B functions in disease progression. PMID:30497506
The Interaction of miR-378i-Skp2 Regulates Cell Senescence in Diabetic Nephropathy. PMID:30469549
Dysfunctional DNA repair pathway via defective FANCD2 gene engenders multifarious exomic and transcriptomic effects in Fanconi anemia. PMID:30450770
Association between one-carbon metabolism indices and DNA methylation status in maternal and cord blood. PMID:30442960
Effect of IAPP on the proteome of cultured Rin-5F cells. PMID:30419808
Unique MicroRNA and mRNA Interactions in EGFR-Mutated Lung Adenocarcinoma. PMID:30404194
Genes responsible for proliferation, differentiation, and junction adhesion are significantly up-regulated in human ovarian granulosa cells during a long-term primary in vitro culture. PMID:30382374
Potential Therapeutic Drugs for Parkinson's Disease Based on Data Mining and Bioinformatics Analysis. PMID:30370044
Common and Rare Genetic Risk Factors Converge in Protein Interaction Networks Underlying Schizophrenia. PMID:30323833
Ethanol Extract of Aurantiochytrium mangrovei 18W-13a Strain Possesses Anti-inflammatory Effects on Murine Macrophage RAW264 Cells. PMID:30319432
Genome-Wide Association Studies Associated with Backfat Thickness in Landrace and Yorkshire Pigs. PMID:30309204
Characterization of gene expression changes over healthy term pregnancies. PMID:30303981
A 44-gene set constructed for predicting the prognosis of clear cell renal cell carcinoma. PMID:30272265
Sequence homology in eukaryotes (SHOE): interactive visual tool for promoter analysis. PMID:30261835
D Rhamnose β-Hederin against human breast cancer by reducing tumor-derived exosomes. PMID:30250584
Heterogeneity of Ly6G+ Ly6C+ Myeloid-Derived Suppressor Cell Infiltrates during Staphylococcus aureus Biofilm Infection. PMID:30249747
Genetic assessment of inbred chicken lines indicates genomic signatures of resistance to Marek's disease. PMID:30221000
Analysis of miRNA signature differentially expressed in exosomes from adriamycin-resistant and parental human breast cancer cells. PMID:30201690
Histone deacetylase inhibitors prevent persistent hypersensitivity in an orofacial neuropathic pain model. PMID:30178698
CEA: Combination-based gene set functional enrichment analysis. PMID:30166636
Deciphering the oviductal extracellular vesicles content across the estrous cycle: implications for the gametes-oviduct interactions and the environment of the potential embryo. PMID:30134841
Gene Expression Differences in Pediatric Lymphatic Malformations: Size Really Matters. PMID:30130159
LncRNAs KB-1836B5, LINC00566 and FAM27L are associated with the survival time of patients with ovarian cancer. PMID:30127984
Systematic Analysis of Differential Expression Profile in Rheumatoid Arthritis Chondrocytes Using Next-Generation Sequencing and Bioinformatics Approaches. PMID:30123050
Ssd1 and Gcn2 suppress global translation efficiency in replicatively aged yeast while their activation extends lifespan. PMID:30117416
Epigenome-wide DNA methylation regulates cardinal pathological features of psoriasis. PMID:30092825
d Rhamnose β-hederin reverses chemoresistance of breast cancer cells by regulating exosome-mediated resistance transmission. PMID:30061173
Neuronal activity induces glutathione metabolism gene expression in astrocytes. PMID:30043519
"Super Gene Set" Causal Relationship Discovery from Functional Genomics Data. PMID:30040650
Profiling of testis-specific long noncoding RNAs in mice. PMID:30012089
Novel natural killer cell-mediated cancer immunotherapeutic activity of anisomycin against hepatocellular carcinoma cells. PMID:30006566
Neonatal anesthesia exposure impacts brain microRNAs and their associated neurodevelopmental processes. PMID:30006558
Crohn's disease patient serum changes protein expression in a human mesenchymal stem cell model in a linear relationship to patients' disease stage and to bone mineral density. PMID:30003044
Bioinformatics analysis to reveal the key genes related to obstructive sleep apnea. PMID:29992456
Analysis of cabazitaxel-resistant mechanism in human castration-resistant prostate cancer. PMID:29989268
Bioinformatics analysis of microarray data to explore the key genes involved in HSF4 mutation-induced cataract. PMID:29977800
Transcriptome Analysis of Adipose Tissue Indicates That the cAMP Signaling Pathway Affects the Feed Efficiency of Pigs. PMID:29973485
Human Fetal-Derived Enterospheres Provide Insights on Intestinal Development and a Novel Model to Study Necrotizing Enterocolitis (NEC). PMID:29930978
Intestinal damage precedes mucosal immune dysfunction in SIV infection. PMID:29907866
Massive expression of germ cell-specific genes is a hallmark of cancer and a potential target for novel treatment development. PMID:29907769
The correlation of copy number variations with longevity in a genome-wide association study of Han Chinese. PMID:29883365
MGOGP: a gene module-based heuristic algorithm for cancer-related gene prioritization. PMID:29871590
Genome and epigenome analysis of monozygotic twins discordant for congenital heart disease. PMID:29866040
Synthetic Lethality-based Identification of Targets for Anticancer Drugs in the Human Signaling Network. PMID:29855504
Functional Impact of the H2A.Z Histone Variant During Meiosis in Saccharomyces cerevisiae. PMID:29853474
Identification of key genes in rheumatoid arthritis and osteoarthritis based on bioinformatics analysis. PMID:29851858
NUP155 insufficiency recalibrates a pluripotent transcriptome with network remodeling of a cardiogenic signaling module. PMID:29848314
A Rare De Novo RAI1 Gene Mutation Affecting BDNF-Enhancer-Driven Transcription Activity Associated with Autism and Atypical Smith-Magenis Syndrome Presentation. PMID:29794985
LRRK2 is a negative regulator of Mycobacterium tuberculosis phagosome maturation in macrophages. PMID:29789389
miRNA expression profile of bone marrow resident cells from children with neuroblastoma is not significantly different from that of healthy children. PMID:29721180
Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity. PMID:29685100
Integrated bioinformatic analysis unveils significant genes and pathways in the pathogenesis of supratentorial primitive neuroectodermal tumor. PMID:29670360
Specific Transcriptome Changes Associated with Blood Pressure Reduction in Hypertensive Patients After Relaxation Response Training. PMID:29616846
New Gene Markers for Metabolic Processes and Homeostasis in Porcine Buccal Pouch Mucosa during Cells Long Term-Cultivation-A Primary Culture Approach. PMID:29596348
Comprehensive analysis of differential expression profiles reveals potential biomarkers associated with the cell cycle and regulated by p53 in human small cell lung cancer. PMID:29545845
miR-34b/c Regulates Wnt1 and Enhances Mesencephalic Dopaminergic Neuron Differentiation. PMID:29526736
Meta-Analysis of miRNAs and Their Involvement as Biomarkers in Oral Cancers. PMID:29516011
Screening for key lncRNAs in the progression of gallbladder cancer using bioinformatics analyses. PMID:29512694
Functional analysis of cell-free RNA using mid-trimester amniotic fluid supernatant in pregnancy with the fetal growth restriction. PMID:29480850
The Integrated Genomic Landscape of Thymic Epithelial Tumors. PMID:29438696
A Phase I Study of CPI-613 in Combination with High-Dose Cytarabine and Mitoxantrone for Relapsed or Refractory Acute Myeloid Leukemia. PMID:29437791
Bioinformatic analysis of gene expression profiles of pituitary gonadotroph adenomas. PMID:29434861
Identification of Differentially Methylated Sites with Weak Methylation Effects. PMID:29419727
Identification of candidate genes that may contribute to the metastasis of prostate cancer by bioinformatics analysis. PMID:29399176
A computationally driven analysis of the polyphenol-protein interactome. PMID:29396566
circRNA_0046366 inhibits hepatocellular steatosis by normalization of PPAR signaling. PMID:29391755
Biclustering of transcriptome sequencing data reveals human tissue-specific circular RNAs. PMID:29363420
Rhizobium sp. IRBG74 Alters Arabidopsis Root Development by Affecting Auxin Signaling. PMID:29354099
Logistic regression analysis for the identification of the metastasis-associated signaling pathways of osteosarcoma. PMID:29328361
Optimizing prognosis-related key miRNA-target interactions responsible for cancer metastasis. PMID:29312626
A primary tumor gene expression signature identifies a crucial role played by tumor stroma myofibroblasts in lymph node involvement in oral squamous cell carcinoma. PMID:29285222
Sirtuin 1-Chromatin-Binding Dynamics Points to a Common Mechanism Regulating Inflammatory Targets in SIV Infection and in the Aging Brain. PMID:29280055
Thin endometrium transcriptome analysis reveals a potential mechanism of implantation failure. PMID:29259471
New roles for nuclear EGFR in regulating the stability and translation of mRNAs associated with VEGF signaling. PMID:29253018
Implantation in eutherians: Which came first, the inflammatory reaction or attachment? PMID:29233941
Phosphoproteomics reveals network rewiring to a pro-adhesion state in annexin-1-deficient mammary epithelial cells. PMID:29233185
Expression Profile of Genes Regulating Steroid Biosynthesis and Metabolism in Human Ovarian Granulosa Cells-A Primary Culture Approach. PMID:29232835
DDX5/p68 associated lncRNA LOC284454 is differentially expressed in human cancers and modulates gene expression. PMID:29227193
Network analysis of pseudogene-gene relationships: from pseudogene evolution to their functional potentials. PMID:29218912
Colorectal cancer stages transcriptome analysis. PMID:29182684
Application of bi-clustering of gene expression data and gene set enrichment analysis methods to identify potentially disease causing nanomaterials. PMID:29159232
ChIP-Seq analysis identifies p27(Kip1)-target genes involved in cell adhesion and cell signalling in mouse embryonic fibroblasts. PMID:29155860
Network pharmacological mechanisms of Vernonia anthelmintica (L.) in the treatment of vitiligo: Isorhamnetin induction of melanogenesis via up-regulation of melanin-biosynthetic genes. PMID:29145845
Genome-wide analysis and transcriptomic profiling of the auxin biosynthesis, transport and signaling family genes in moso bamboo (Phyllostachys heterocycla). PMID:29132316
Circadian actin dynamics drive rhythmic fibroblast mobilization during wound healing. PMID:29118260
Bioinformatic Analysis Identifies Three Potentially Key Differentially Expressed Genes in Peripheral Blood Mononuclear Cells of Patients with Takayasu's Arteritis. PMID:29105401
PI3K and Inhibitor of Apoptosis Proteins Modulate Gentamicin- Induced Hair Cell Death in the Zebrafish Lateral Line. PMID:29093665
Identifying host regulators and inhibitors of liver stage malaria infection using kinase activity profiles. PMID:29089541
Effects of distinct drugs on gene transcription in an osteosarcoma cell line. PMID:29085469
Gene Network Construction from Microarray Data Identifies a Key Network Module and Several Candidate Hub Genes in Age-Associated Spatial Learning Impairment. PMID:29066959
Identification of Gene Expression Changes in the Aorta of ApoE Null Mice Fed a High-Fat Diet. PMID:29064389
Epigenome-wide association study of asthma and wheeze in childhood and adolescence. PMID:29046734
HOXC13 promotes proliferation of lung adenocarcinoma via modulation of CCND1 and CCNE1. PMID:28979806
iTRAQ protein profile analysis of developmental dynamics in soybean [Glycine max (L.) Merr.] leaves. PMID:28953898
NetGen: a novel network-based probabilistic generative model for gene set functional enrichment analysis. PMID:28950861
Integrated network analysis to explore the key genes regulated by parathyroid hormone receptor 1 in osteosarcoma. PMID:28934958
Screening of Critical Genes and MicroRNAs in Blood Samples of Patients with Ruptured Intracranial Aneurysms by Bioinformatic Analysis of Gene Expression Data. PMID:28930970
Nitric Oxide Mediates Nitrite-Sensing and Acclimation and Triggers a Remodeling of Lipids. PMID:28924015
The Long-Lasting Rodenticide Brodifacoum Induces Neuropathology in Adult Male Rats. PMID:28903499
Detection of dysregulated protein-association networks by high-throughput proteomics predicts cancer vulnerabilities. PMID:28892078
Chemotherapy induces secretion of exosomes loaded with heparanase that degrades extracellular matrix and impacts tumor and host cell behavior. PMID:28888912
Altered erythropoiesis and decreased number of erythrocytes in children with neuroblastoma. PMID:28881804
miRNA Enriched in Human Neuroblast Nuclei Bind the MAZ Transcription Factor and Their Precursors Contain the MAZ Consensus Motif. PMID:28878619
Intestinal and Circulating MicroRNAs in Coeliac Disease. PMID:28878141
Vomocytosis of live pathogens from macrophages is regulated by the atypical MAP kinase ERK5. PMID:28835924
DNA Methylation of Synaptic Genes in the Prefrontal Cortex Is Associated with Aging and Age-Related Cognitive Impairment. PMID:28824413
Effects of the vertically transmitted microsporidian Facilispora margolisi and the parasiticide emamectin benzoate on salmon lice (Lepeophtheirus salmonis). PMID:28818044
An extended model for culture-dependent heterogenous gene expression and proliferation dynamics in mouse embryonic stem cells. PMID:28794899
The miR-183 family cluster alters zinc homeostasis in benign prostate cells, organoids and prostate cancer xenografts. PMID:28794468
Differential MicroRNA Analyses of Burkholderia pseudomallei- and Francisella tularensis-Exposed hPBMCs Reveal Potential Biomarkers. PMID:28791299
D-chiro-inositol effectively attenuates cholestasis in bile duct ligated rats by improving bile acid secretion and attenuating oxidative stress. PMID:28748913
Plakophilin-2 is required for transcription of genes that control calcium cycling and cardiac rhythm. PMID:28740174
MED12 regulates a transcriptional network of calcium-handling genes in the heart. PMID:28724790
Bioinformatics analysis to identify the critical genes, microRNAs and long noncoding RNAs in melanoma. PMID:28723760
Analysis of individual cells identifies cell-to-cell variability following induction of cellular senescence. PMID:28699239
Comparative muscle transcriptome associated with carcass traits of Nellore cattle. PMID:28673252
A Comprehensive Mouse Transcriptomic BodyMap across 17 Tissues by RNA-seq. PMID:28646208
Genomic Reconstruction of the History of Native Sheep Reveals the Peopling Patterns of Nomads and the Expansion of Early Pastoralism in East Asia. PMID:28645168
Markers of disease and steroid responsiveness in paediatric idiopathic nephrotic syndrome: Whole-transcriptome sequencing of peripheral blood mononuclear cells. PMID:28639503
DOT1L safeguards cartilage homeostasis and protects against osteoarthritis. PMID:28627522
Identification of critical genes in nucleus pulposus cells isolated from degenerated intervertebral discs using bioinformatics analysis. PMID:28586059
The transcriptional repressor GATAD2B mediates progesterone receptor suppression of myometrial contractile gene expression. PMID:28576827
Expression of genes associated with BMP signaling pathway in porcine oocytes before and after IVM - a microarray approach. PMID:28576120
Properties of genes essential for mouse development. PMID:28562614
Differences in molecular regulation between osteochondroma and bizarre parosteal osteochondromatous proliferation. PMID:28560436
MeDIP-seq and nCpG analyses illuminate sexually dimorphic methylation of gonadal development genes with high historic methylation in turtle hatchlings with temperature-dependent sex determination. PMID:28533820
Ranking metrics in gene set enrichment analysis: do they matter? PMID:28499413
Screening of Tumor Suppressor Genes in Metastatic Colorectal Cancer. PMID:28473981
Identifying disease-associated pathways in one-phenotype data based on reversal gene expression orderings. PMID:28465555
Ancient genes establish stress-induced mutation as a hallmark of cancer. PMID:28441401
Genome-Wide Identification of Target Genes for the Key B Cell Transcription Factor Ets1. PMID:28439269
Identification and analysis of mutational hotspots in oncogenes and tumour suppressors. PMID:28423505
Integrated mRNA and lncRNA expression profiling for exploring metastatic biomarkers of human intrahepatic cholangiocarcinoma. PMID:28401021
Human and Epstein-Barr Virus miRNA Profiling as Predictive Biomarkers for Endemic Burkitt Lymphoma. PMID:28400759
The interactome of the copper transporter ATP7A belongs to a network of neurodevelopmental and neurodegeneration factors. PMID:28355134
Smoking-Dependent Distal-to-Proximal Repatterning of the Adult Human Small Airway Epithelium. PMID:28345955
Transcriptional Dynamics of Cultured Human Villous Cytotrophoblasts. PMID:28323933
Priming of transcriptional memory responses via the chromatin accessibility landscape in T cells. PMID:28317936
Transcriptomic responses to environmental temperature by turtles with temperature-dependent and genotypic sex determination assessed by RNAseq inform the genetic architecture of embryonic gonadal development. PMID:28296881
Insights into Dynamic Polymicrobial Synergy Revealed by Time-Coursed RNA-Seq. PMID:28293219
E2F8, a direct target of miR-144, promotes papillary thyroid cancer progression via regulating cell cycle. PMID:28270228
A Whole-Genome RNA Interference Screen Reveals a Role for Spry2 in Insulin Transcription and the Unfolded Protein Response. PMID:28246293
Comprehensive analysis of long non-coding RNAs highlights their spatio-temporal expression patterns and evolutional conservation in Sus scrofa. PMID:28233874
Effect of myeloid differentiation primary response gene 88 on expression profiles of genes during the development and progression of Helicobacter-induced gastric cancer. PMID:28201999
Leveraging Online Resources to Prioritize Candidate Genes for Functional Analyses: Using the Fetal Testis as a Test Case. PMID:28196369
An Atlas of annotations of Hydra vulgaris transcriptome. PMID:28185543
Multiplexed Phosphoproteomic Profiling Using Titanium Dioxide and Immunoaffinity Enrichments Reveals Complementary Phosphorylation Events. PMID:28171727
p27Kip1, PCAF and PAX5 cooperate in the transcriptional regulation of specific target genes. PMID:28158851
Synergetic effects of DNA methylation and histone modification during mouse induced pluripotent stem cell generation. PMID:28155862
Helminth-induced Ly6Chi monocyte-derived alternatively activated macrophages suppress experimental autoimmune encephalomyelitis. PMID:28094319
6-Phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 is essential for p53-null cancer cells. PMID:28092678
Integrated Approaches to Drug Discovery for Oxidative Stress-Related Retinal Diseases. PMID:28053689
Transcriptome Profiling Identifies Ribosome Biogenesis as a Target of Alcohol Teratogenicity and Vulnerability during Early Embryogenesis. PMID:28046103
Expression Profiling of a Human Thyroid Cell Line Stably Expressing the BRAFV600E Mutation. PMID:28031237
Long-term propagation of tree shrew spermatogonial stem cells in culture and successful generation of transgenic offspring. PMID:28008926
Depot Dependent Effects of Dexamethasone on Gene Expression in Human Omental and Abdominal Subcutaneous Adipose Tissues from Obese Women. PMID:28005982
Efficient DNA binding of NF-κB requires the chaperone-like function of NPM1. PMID:28003476
Prediction of Possible Biomarkers and Novel Pathways Conferring Risk to Post-Traumatic Stress Disorder. PMID:27997584
Integrated analyses for genetic markers of polycystic ovary syndrome with 9 case-control studies of gene expression profiles. PMID:27965459
IRF5 governs liver macrophage activation that promotes hepatic fibrosis in mice and humans. PMID:27942586
Concordance between somatic copy number loss and down-regulated expression: A pan-cancer study of cancer predisposition genes. PMID:27929028
Transcriptomic Analysis of Mouse Cochlear Supporting Cell Maturation Reveals Large-Scale Changes in Notch Responsiveness Prior to the Onset of Hearing. PMID:27918591
Evaluation of microRNA Expression in Patients with Herpes Zoster. PMID:27918431
Transcriptome and long noncoding RNA sequencing of three extracellular vesicle subtypes released from the human colon cancer LIM1863 cell line. PMID:27917920
Amylin Treatment Reduces Neuroinflammation and Ameliorates Abnormal Patterns of Gene Expression in the Cerebral Cortex of an Alzheimer's Disease Mouse Model. PMID:27911303
Upregulation of FAM83D promotes malignant phenotypes of lung adenocarcinoma by regulating cell cycle. PMID:27904773
PRDM14 Drives OCT3/4 Recruitment via Active Demethylation in the Transition from Primed to Naive Pluripotency. PMID:27866876
Semi-Automated Curation Allows Causal Network Model Building for the Quantification of Age-Dependent Plaque Progression in ApoE-/- Mouse. PMID:27840576
Single-Cell Resolution of Temporal Gene Expression during Heart Development. PMID:27840107
Expression Data Analysis for the Identification of Potential Biomarker of Pregnancy Associated Breast Cancer. PMID:27832451
Proteomic Signatures of Thymomas. PMID:27832160
Oxidative stress-induced CREB upregulation promotes DNA damage repair prior to neuronal cell death protection. PMID:27816995
A Portrait of Ribosomal DNA Contacts with Hi-C Reveals 5S and 45S rDNA Anchoring Points in the Folded Human Genome. PMID:27797956
Genome-wide identification of expression quantitative trait loci for human telomerase. PMID:27759658
Neonatal cardiac dysfunction and transcriptome changes caused by the absence of Celf1. PMID:27759042
Postnatal onset of retinal degeneration by loss of embryonic Ezh2 repression of Six1. PMID:27677711
Identification potential biomarkers in pulmonary tuberculosis and latent infection based on bioinformatics analysis. PMID:27655333
Tissue enrichment analysis for C. elegans genomics. PMID:27618863
Proteomic analysis reveals that the protective effects of ginsenoside Rb1 are associated with the actin cytoskeleton in β-amyloid-treated neuronal cells. PMID:27616904
A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis. PMID:27605362
Role of miRNAs in Epicardial Adipose Tissue in CAD Patients with T2DM. PMID:27597954
Analysis of gene expression profile identifies potential biomarkers for atherosclerosis. PMID:27573188
Secretome proteomics reveals candidate non-invasive biomarkers of BRCA1 deficiency in breast cancer. PMID:27566577
Immune cell-specific transcriptional profiling highlights distinct molecular pathways controlled by Tob1 upon experimental autoimmune encephalomyelitis. PMID:27546286
Maternal obesity programs mitochondrial and lipid metabolism gene expression in infant umbilical vein endothelial cells. PMID:27531045
The Antitumor Effect of Metformin Is Mediated by miR-26a in Breast Cancer. PMID:27517917
On the study of microbial transcriptomes using second- and third-generation sequencing technologies. PMID:27480632
Gene Variability Between Perineural-positive and Perineural-negative Squamous Cell Skin Cancers. PMID:27466506
Systemic transcriptome analysis of hepatocellular carcinoma. PMID:27460080
SZDB: A Database for Schizophrenia Genetic Research. PMID:27451428
Cross-Phenotype Polygenic Risk Score Analysis of Persistent Post-Concussive Symptoms in U.S. Army Soldiers with Deployment-Acquired Traumatic Brain Injury. PMID:27439997
Developmental Transcriptomics of the Hawaiian Anchialine Shrimp Halocaridina rubra Holthuis, 1963 (Crustacea: Atyidae). PMID:27400978
Identifying gene regulatory network rewiring using latent differential graphical models. PMID:27378774
Sex-biased gene expression and sequence conservation in Atlantic and Pacific salmon lice (Lepeophtheirus salmonis). PMID:27377915
Asymmetric Inheritance of Aggregated Proteins and Age Reset in Yeast Are Regulated by Vac17-Dependent Vacuolar Functions. PMID:27373154
Transcriptome sequencing of neurologic diseases associated genes in HHV-6A infected human astrocyte. PMID:27344170
Salinity-induced changes in gene expression from anterior and posterior gills of Callinectes sapidus (Crustacea: Portunidae) with implications for crustacean ecological genomics. PMID:27337176
Transcriptomic comparison of Drosophila snRNP biogenesis mutants reveals mutant-specific changes in pre-mRNA processing: implications for spinal muscular atrophy. PMID:27268418
Purifying selection shapes the coincident SNP distribution of primate coding sequences. PMID:27255481
Systematic analysis of the molecular mechanism underlying atherosclerosis using a text mining approach. PMID:27251057
Label-Free Proteomics Assisted by Affinity Enrichment for Elucidating the Chemical Reactivity of the Liver Mitochondrial Proteome toward Adduction by the Lipid Electrophile 4-hydroxy-2-nonenal (HNE). PMID:27242993
Transcription Profile of Aging and Cognition-Related Genes in the Medial Prefrontal Cortex. PMID:27242522
Weighted gene co-expression network analysis reveals key genes involved in pancreatic ductal adenocarcinoma development. PMID:27240826
Transcriptomic analysis reveals distinct resistant response by physcion and chrysophanol against cucumber powdery mildew. PMID:27231648
Leveraging Comparative Genomics to Identify and Functionally Characterize Genes Associated with Sperm Phenotypes in Python bivittatus (Burmese Python). PMID:27200191
Immunogenic Subtypes of Breast Cancer Delineated by Gene Classifiers of Immune Responsiveness. PMID:27197066
Bone-associated gene evolution and the origin of flight in birds. PMID:27193938
dbCPG: A web resource for cancer predisposition genes. PMID:27192119
miR-3646 promotes cell proliferation, migration, and invasion via regulating G2/M transition in human breast cancer cells. PMID:27186291
Induction of the type I interferon response in neurological forms of Gaucher disease. PMID:27175482
Genome-wide Association Studies of Posttraumatic Stress Disorder in 2 Cohorts of US Army Soldiers. PMID:27167565
Profiling of the dynamically alteredgene expression in peripheral nerve injury using NGS RNA sequencing technique. PMID:27158375
Identification of potential therapeutic target genes and mechanisms in head and neck squamous cell carcinoma by bioinformatics analysis. PMID:27123054
Cell-cycle-independent transitions in temporal identity of mammalian neural progenitor cells. PMID:27094546
Upregulation of inflammatory gene transcripts in periosteum of chronic migraineurs: Implications for extracranial origin of headache. PMID:27091721
Defining the multivalent functions of CTCF from chromatin state and three-dimensional chromatin interactions. PMID:27067545
Specific c-Jun target genes in malignant melanoma. PMID:27050748
CSCdb: a cancer stem cells portal for markers, related genes and functional information. PMID:26989154
Transcriptional analysis of antiviral small molecule therapeutics as agonists of the RLR pathway. PMID:26981429
Comorbidities of Psoriasis - Exploring the Links by Network Approach. PMID:26966903
Analyzing the Role of MicroRNAs in Schizophrenia in the Context of Common Genetic Risk Variants. PMID:26963595
Dichloroacetate Prevents Cisplatin-Induced Nephrotoxicity without Compromising Cisplatin Anticancer Properties. PMID:26961349
Weighted gene co-expression network analysis identifies specific modules and hub genes related to coronary artery disease. PMID:26944061
CHIR99021 enhances Klf4 Expression through β-Catenin Signaling and miR-7a Regulation in J1 Mouse Embryonic Stem Cells. PMID:26938105
Integrated Analysis of Dysregulated ncRNA and mRNA Expression Profiles in Humans Exposed to Carbon Nanotubes. PMID:26930275
Altered lipid metabolism in the aging kidney identified by three layered omic analysis. PMID:26886165
Application of biclustering of gene expression data and gene set enrichment analysis methods to identify potentially disease causing nanomaterials. PMID:26885455
Differential regulation of mouse and human nephron progenitors by the Six family of transcriptional regulators. PMID:26884396
Temporal retinal transcriptome and systems biology analysis identifies key pathways and hub genes in Staphylococcus aureus endophthalmitis. PMID:26865111
Transcription Factor RFX2 Is a Key Regulator of Mouse Spermiogenesis. PMID:26853561
EBF2 promotes the recruitment of beige adipocytes in white adipose tissue. PMID:26844207
A genomics-based framework for identifying biomarkers of human neurodevelopmental toxicity. PMID:26827931
Quantitative Analysis of Global Proteome and Lysine Acetylome Reveal the Differential Impacts of VPA and SAHA on HL60 Cells. PMID:26822725
Core Proteomic Analysis of Unique Metabolic Pathways of Salmonella enterica for the Identification of Potential Drug Targets. PMID:26799565
Quantitative Analysis of Differential Proteome Expression in Epithelial-to-Mesenchymal Transition of Bladder Epithelial Cells Using SILAC Method. PMID:26784156
Multiple functional linear model for association analysis of RNA-seq with imaging. PMID:26753102
The Female Post-Mating Response Requires Genes Expressed in the Secondary Cells of the Male Accessory Gland in Drosophila melanogaster. PMID:26746709
Largescale Transcriptomics Analysis Suggests Over-Expression of BGH3, MMP9 and PDIA3 in Oral Squamous Cell Carcinoma. PMID:26745629
New insights into functional regulation in MS-based drug profiling. PMID:26743025
Identification of novel genes and pathways in carotid atheroma using integrated bioinformatic methods. PMID:26742467
The effects of transfection reagent polyethyleneimine (PEI) and non-targeting control siRNAs on global gene expression in human aortic smooth muscle cells. PMID:26728506
AraC-Type Regulator Rsp Adapts Staphylococcus aureus Gene Expression to Acute Infection. PMID:26712209
Quantitative Profiling of Protein S-Glutathionylation Reveals Redox-Dependent Regulation of Macrophage Function during Nanoparticle-Induced Oxidative Stress. PMID:26700264
iCLIP identifies novel roles for SAFB1 in regulating RNA processing and neuronal function. PMID:26694817
Genetic Architecture of Atherosclerosis in Mice: A Systems Genetics Analysis of Common Inbred Strains. PMID:26694027
Comprehensive Identification of Long Non-coding RNAs in Purified Cell Types from the Brain Reveals Functional LncRNA in OPC Fate Determination. PMID:26683846
Multiple target drug cocktail design for attacking the core network markers of four cancers using ligand-based and structure-based virtual screening methods. PMID:26680552
Targeting Innate Immunity for Antiviral Therapy through Small Molecule Agonists of the RLR Pathway. PMID:26676770
Urinary neutrophil gelatinase-associated lipocalin is associated with heavy metal exposure in welding workers. PMID:26673824
Genome-wide identification of Wig-1 mRNA targets by RIP-Seq analysis. PMID:26672765
BMDExpress Data Viewer - a visualization tool to analyze BMDExpress datasets. PMID:26671443
The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs. PMID:26632259
Finding New Order in Biological Functions from the Network Structure of Gene Annotations. PMID:26588252
The anatomical distribution of genetic associations. PMID:26586807
A Transcriptomic Study of Maternal Thyroid Adaptation to Pregnancy in Rats. PMID:26580608
Recurrent internal tandem duplications of BCOR in clear cell sarcoma of the kidney. PMID:26573325
NRP1 is targeted by miR-130a and miR-130b, and is associated with multidrug resistance in epithelial ovarian cancer based on integrated gene network analysis. PMID:26573160
Interactome analysis of gene expression profile reveals potential novel key transcriptional regulators of skin pathology in vitiligo. PMID:26562080
Exosomes decrease sensitivity of breast cancer cells to adriamycin by delivering microRNAs. PMID:26555545
Nitric Oxide Regulates Gene Expression in Cancers by Controlling Histone Posttranslational Modifications. PMID:26542213
No Promoter Left Behind (NPLB): learn de novo promoter architectures from genome-wide transcription start sites. PMID:26530723
Genes with stable DNA methylation levels show higher evolutionary conservation than genes with fluctuant DNA methylation levels. PMID:26515589
Elucidating the cancer-specific genetic alteration spectrum of glioblastoma derived cell lines from whole exome and RNA sequencing. PMID:26496030
Computational Systems Biology of Psoriasis: Are We Ready for the Age of Omics and Systems Biomarkers? PMID:26480058
MGDB: a comprehensive database of genes involved in melanoma. PMID:26424083
Elevated free fatty acid uptake via CD36 promotes epithelial-mesenchymal transition in hepatocellular carcinoma. PMID:26424075
DMAP: a connectivity map database to enable identification of novel drug repositioning candidates. PMID:26423722
Recent findings and technological advances in phosphoproteomics for cells and tissues. PMID:26400465
Transcription Adaptation during In Vitro Adipogenesis and Osteogenesis of Porcine Mesenchymal Stem Cells: Dynamics of Pathways, Biological Processes, Up-Stream Regulators, and Gene Networks. PMID:26398344
Single-cell transcriptomic reconstruction reveals cell cycle and multi-lineage differentiation defects in Bcl11a-deficient hematopoietic stem cells. PMID:26387834
Identification of candidate gonadal sex differentiation genes in the chicken embryo using RNA-seq. PMID:26377738
Global Gene Expression Analysis in PKCα-/- Mouse Skin Reveals Structural Changes in the Dermis and Defective Wound Granulation Tissue. PMID:26354149
Akt1/protein kinase B enhances transcriptional reprogramming of fibroblasts to functional cardiomyocytes. PMID:26354121
A quantitative proteomics analysis of MCF7 breast cancer stem and progenitor cell populations. PMID:26332018
IDEA: Integrated Drug Expression Analysis-Integration of Gene Expression and Clinical Data for the Identification of Therapeutic Candidates. PMID:26312165
Bifidobacteria grown on human milk oligosaccharides downregulate the expression of inflammation-related genes in Caco-2 cells. PMID:26303932
MVDA: a multi-view genomic data integration methodology. PMID:26283178
Protein acetylation dynamics in response to carbon overflow in Escherichia coli. PMID:26264774
Characterization of pulmonary protein profiles in response to zinc oxide nanoparticles in mice: a 24-hour and 28-day follow-up study. PMID:26251593
Quantitative Analysis of Differential Proteome Expression in Bladder Cancer vs. Normal Bladder Cells Using SILAC Method. PMID:26230496
Systematic Analysis of the Molecular Mechanism Underlying Decidualization Using a Text Mining Approach. PMID:26222155
miR-218 is essential to establish motor neuron fate as a downstream effector of Isl1-Lhx3. PMID:26212498
Combined serial analysis of gene expression and transcription factor binding site prediction identifies novel-candidate-target genes of Nr2e1 in neocortex development. PMID:26204903
Search for common targets of lithium and valproic acid identifies novel epigenetic effects of lithium on the rat leptin receptor gene. PMID:26171981
Inferring pathway dysregulation in cancers from multiple types of omic data. PMID:26170901
Acquisition of estrogen independence induces TOB1-related mechanisms supporting breast cancer cell proliferation. PMID:26165839
Transcriptome analysis of mRNA and miRNA in skeletal muscle indicates an important network for differential Residual Feed Intake in pigs. PMID:26150313
NKX2-5 mutations causative for congenital heart disease retain functionality and are directed to hundreds of targets. PMID:26146939
Pathway and network analysis of cancer genomes. PMID:26125594
Protective effect of bicyclol against bile duct ligation-induced hepatic fibrosis in rats. PMID:26109801
Diallyl disulfide inhibits TNFα induced CCL2 release through MAPK/ERK and NF-Kappa-B signaling. PMID:26100848
Comprehensive genome-wide transcription factor analysis reveals that a combination of high affinity and low affinity DNA binding is needed for human gene regulation. PMID:26099425
The DAXX co-repressor is directly recruited to active regulatory elements genome-wide to regulate autophagy programs in a model of human prostate cancer. PMID:26097870
Ruminal Transcriptomic Analysis of Grass-Fed and Grain-Fed Angus Beef Cattle. PMID:26090810
The pervasiveness and plasticity of circadian oscillations: the coupled circadian-oscillators framework. PMID:26049162
An Ultrasensitive Mechanism Regulates Influenza Virus-Induced Inflammation. PMID:26046528
Integrated analysis of DNA methylation and microRNA regulation of the lung adenocarcinoma transcriptome. PMID:26035298
Seasonal effects on gene expression. PMID:26023781
Comparative analysis between endometrial proteomes of pregnant and non-pregnant ewes during the peri-implantation period. PMID:26023329
DYRK1A controls the transition from proliferation to quiescence during lymphoid development by destabilizing Cyclin D3. PMID:26008897
Significant expansion of the REST/NRSF cistrome in human versus mouse embryonic stem cells: potential implications for neural development. PMID:25990720
Inter-alpha-trypsin inhibitor heavy chain 4: a novel biomarker for environmental exposure to particulate air pollution in patients with chronic obstructive pulmonary disease. PMID:25977605
Deregulation of genes related to iron and mitochondrial metabolism in refractory anemia with ring sideroblasts. PMID:25955609
NetworkAnalyst for statistical, visual and network-based meta-analysis of gene expression data. PMID:25950236
Dissecting the calcium-induced differentiation of human primary keratinocytes stem cells by integrative and structural network analyses. PMID:25946651
Genomic and clinical effects associated with a relaxation response mind-body intervention in patients with irritable bowel syndrome and inflammatory bowel disease. PMID:25927528
Visual analysis of biological data-knowledge networks. PMID:25925016
FOXA2 regulates a network of genes involved in critical functions of human intestinal epithelial cells. PMID:25921584
Next-generation sequencing reveals novel differentially regulated mRNAs, lncRNAs, miRNAs, sdRNAs and a piRNA in pancreatic cancer. PMID:25910082
Genome-wide association study of serum minerals levels in children of different ethnic background. PMID:25886283
Transposon mutagenesis identifies genetic drivers of Braf(V600E) melanoma. PMID:25848750
Joint GWAS Analysis: Comparing similar GWAS at different genomic resolutions identifies novel pathway associations with six complex diseases. PMID:25838990
Identification of potential therapeutic target genes, key miRNAs and mechanisms in acute myeloid leukemia based on bioinformatics analysis. PMID:25832863
Properties of protein drug target classes. PMID:25822509
Epstein-Barr virus transcription factor Zta acts through distal regulatory elements to directly control cellular gene expression. PMID:25779048
Loss of CITED1, an MITF regulator, drives a phenotype switch in vitro and can predict clinical outcome in primary melanoma tumours. PMID:25755924
Hsa-microRNA-181a is a regulator of a number of cancer genes and a biomarker for endometrial carcinoma in patients: a bioinformatic and clinical study and the therapeutic implication. PMID:25733820
Dissecting the roles of microRNAs in coronary heart disease via integrative genomic analyses. PMID:25657313
BACA: bubble chArt to compare annotations. PMID:25652236
Dysregulation of miR-34a links neuronal development to genetic risk factors for bipolar disorder. PMID:25623948
Scl binds to primed enhancers in mesoderm to regulate hematopoietic and cardiac fate divergence. PMID:25564442
Genomics of ecological adaptation in cactophilic Drosophila. PMID:25552534
RNA-Seq identifies novel myocardial gene expression signatures of heart failure. PMID:25528681
Gene expression study in positron emission tomography-positive abdominal aortic aneurysms identifies CCL18 as a potential biomarker for rupture risk. PMID:25517227
Advantages of mixing bioinformatics and visualization approaches for analyzing sRNA-mediated regulatory bacterial networks. PMID:25477348
Proteomics-Based Identification of Differentially Abundant Proteins from Human Keratinocytes Exposed to Arsenic Trioxide. PMID:25419056
The E. coli sirtuin CobB shows no preference for enzymatic and nonenzymatic lysine acetylation substrate sites. PMID:25417765
Long noncoding RNA EWSAT1-mediated gene repression facilitates Ewing sarcoma oncogenesis. PMID:25401475
Effective chemical constituent's identification of extracting solution from herbs - a review. PMID:25371564
SOX4 inhibits GBM cell growth and induces G0/G1 cell cycle arrest through Akt-p53 axis. PMID:25366337
Spatially restricted Hedgehog signalling regulates HGF-induced branching of the adult prostate. PMID:25362352
Hedgehog signaling restrains bladder cancer progression by eliciting stromal production of urothelial differentiation factors. PMID:25314078
The effect of colonoscopy on whole blood gene expression profile: an experimental investigation for colorectal cancer biomarker discovery. PMID:25306939
A meta-analysis of gene expression quantitative trait loci in brain. PMID:25290266
Co-expression analysis of fetal weight-related genes in ovine skeletal muscle during mid and late fetal development stages. PMID:25285036
Protein and microRNA biomarkers from lavage, urine, and serum in military personnel evaluated for dyspnea. PMID:25282157
Affinity purification-mass spectrometry and network analysis to understand protein-protein interactions. PMID:25275790
Transcriptomic profile induced in bone marrow mesenchymal stromal cells after interaction with multiple myeloma cells: implications in myeloma progression and myeloma bone disease. PMID:25268740
Transcriptome profiling of expression changes during neuronal death by RNA-Seq. PMID:25258427
Exploration of potential roles of a new LOXL2 splicing variant using network knowledge in esophageal squamous cell carcinoma. PMID:25254241
A systems biology approach reveals a link between systemic cytokines and skeletal muscle energy metabolism in a rodent smoking model and human COPD. PMID:25228925
Loss of BMAL1 in ovarian steroidogenic cells results in implantation failure in female mice. PMID:25225411
Constitutive ERK1/2 activation contributes to production of double minute chromosomes in tumour cells. PMID:25214430
Differential gene expression in proximal and distal nerve segments of rats with sciatic nerve injury during Wallerian degeneration. PMID:25206781
Increased frequency of de novo copy number variants in congenital heart disease by integrative analysis of single nucleotide polymorphism array and exome sequence data. PMID:25205790
Transcriptome profiling of natural dichromatism in the annual fishes Nothobranchius furzeri and Nothobranchius kadleci. PMID:25183398
Systems-based analyses of brain regions functionally impacted in Parkinson's disease reveals underlying causal mechanisms. PMID:25170892
Proteomics of Fusobacterium nucleatum within a model developing oral microbial community. PMID:25155235
Analysis of differential miRNA expression in primary tumor and stroma of colorectal cancer patients. PMID:25143946
Genetic network identifies novel pathways contributing to atherosclerosis susceptibility in the innominate artery. PMID:25115202
The Succinated Proteome of FH-Mutant Tumours. PMID:25105836
Analysis of the placental tissue transcriptome of normal and preeclampsia complicated pregnancies. PMID:25093114
MicroRNA and mRNA expression profiling in rat acute respiratory distress syndrome. PMID:25070658
Activity-associated miRNA are packaged in Map1b-enriched exosomes released from depolarized neurons. PMID:25053844
A genome-wide association study of immune response traits in Canadian Holstein cattle. PMID:24996426
EGR1 decreases the malignancy of human non-small cell lung carcinoma by regulating KRT18 expression. PMID:24990820
Exploring the miRNA-mRNA regulatory network in clear cell renal cell carcinomas by next-generation sequencing expression profiles. PMID:24977165
Exosomes from docetaxel-resistant breast cancer cells alter chemosensitivity by delivering microRNAs. PMID:24969560
Comparative analysis of human tissue interactomes reveals factors leading to tissue-specific manifestation of hereditary diseases. PMID:24921629
Overlap of expression quantitative trait loci (eQTL) in human brain and blood. PMID:24894490
Integrative analysis of the transcriptome profiles observed in type 1, type 2 and gestational diabetes mellitus reveals the role of inflammation. PMID:24885568
GATA4 represses an ileal program of gene expression in the proximal small intestine by inhibiting the acetylation of histone H3, lysine 27. PMID:24878542
R-based software for the integration of pathway data into bioinformatic algorithms. PMID:24833336
De novo characterization of the spleen transcriptome of the large yellow croaker (Pseudosciaena crocea) and analysis of the immune relevant genes and pathways involved in the antiviral response. PMID:24820969
Structural, kinetic and proteomic characterization of acetyl phosphate-dependent bacterial protein acetylation. PMID:24756028
Analysis of molecular cytogenetic alteration in rhabdomyosarcoma by array comparative genomic hybridization. PMID:24743780
Heritability and genomics of gene expression in peripheral blood. PMID:24728292
Analysis of the transcriptional networks underpinning the activation of murine macrophages by inflammatory mediators. PMID:24721704
Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation. PMID:24690414
Integrative ChIP-seq/microarray analysis identifies a CTNNB1 target signature enriched in intestinal stem cells and colon cancer. PMID:24651522
CYP6 P450 enzymes and ACE-1 duplication produce extreme and multiple insecticide resistance in the malaria mosquito Anopheles gambiae. PMID:24651294
Long non-coding RNAs: new players in ocular neovascularization. PMID:24623407
A bioinformatics approach reveals novel interactions of the OVOL transcription factors in the regulation of epithelial - mesenchymal cell reprogramming and cancer progression. PMID:24612742
Annotation enrichment analysis: an alternative method for evaluating the functional properties of gene sets. PMID:24569707
Forced arm use is superior to voluntary training for motor recovery and brain plasticity after cortical ischemia in rats. PMID:24528872
Identification of latent tuberculosis infection-related microRNAs in human U937 macrophages expressing Mycobacterium tuberculosis Hsp16.3. PMID:24521422
RNA-seq transcriptome profiling of equine inner cell mass and trophectoderm. PMID:24478389
geneCommittee: a web-based tool for extensively testing the discriminatory power of biologically relevant gene sets in microarray data classification. PMID:24475928
Environmental stress affects the activity of metabolic and growth factor signaling networks and induces autophagy markers in MCF7 breast cancer cells. PMID:24425749
gsGator: an integrated web platform for cross-species gene set analysis. PMID:24423189
DevMouse, the mouse developmental methylome database and analysis tools. PMID:24408217
Separate enrichment analysis of pathways for up- and downregulated genes. PMID:24352673
The early phase transcriptome of bovine monocyte-derived macrophages infected with Staphylococcus aureus in vitro. PMID:24341851
Causal inference of gene regulation with subnetwork assembly from genetical genomics data. PMID:24322297
NF-κB activation-induced anti-apoptosis renders HER2-positive cells drug resistant and accelerates tumor growth. PMID:24319068
Transcript expression patterns illuminate the mechanistic background of hormesis in caenorhabditis elegans maupas. PMID:24298231
Functional and genomic analyses of alpha-solenoid proteins. PMID:24278209
Target analysis by integration of transcriptome and ChIP-seq data with BETA. PMID:24263090
A comparison of gene set analysis methods in terms of sensitivity, prioritization and specificity. PMID:24260172
A meta-analysis revealed insights into the sources, conservation and impact of microRNA 5'-isoforms in four model species. PMID:24178030
SIDD: a semantically integrated database towards a global view of human disease. PMID:24146757
Comparative analysis of proteomic profiles between endometrial caruncular and intercaruncular areas in ewes during the peri-implantation period. PMID:24093944
Hairless and the polyamine putrescine form a negative regulatory loop in the epidermis. PMID:24079733
Recommendations for the design and analysis of epigenome-wide association studies. PMID:24076989
RNA-Seq reveals spliceosome and proteasome genes as most consistent transcripts in human cancer cells. PMID:24069164
MicroRNAs act complementarily to regulate disease-related mRNA modules in human diseases. PMID:24062574
Genome-wide shRNA screening to identify factors mediating Gata6 repression in mouse embryonic stem cells. PMID:24046324
Genetic and nongenetic variation revealed for the principal components of human gene expression. PMID:24026092
Kaposi's sarcoma-associated herpesvirus encodes a mimic of cellular miR-23. PMID:23986579
Comparative proteomics of inhaled silver nanoparticles in healthy and allergen provoked mice. PMID:23946650
RBM5 is a male germ cell splicing factor and is required for spermatid differentiation and male fertility. PMID:23935508
Global protein differential expression profiling of cerebrospinal fluid samples pooled from Chinese sporadic CJD and non-CJD patients. PMID:23912784
RNA sequencing of the human milk fat layer transcriptome reveals distinct gene expression profiles at three stages of lactation. PMID:23861770
A decision theory paradigm for evaluating identifier mapping and filtering methods using data integration. PMID:23855655
Bioinformatics for spermatogenesis: annotation of male reproduction based on proteomics. PMID:23852026
Genome-wide DNA methylation analysis reveals a potential mechanism for the pathogenesis and development of uterine leiomyomas. PMID:23818951
Mining breast cancer genes with a network based noise-tolerant approach. PMID:23799982
Monozygotic twins affected with major depressive disorder have greater variance in methylation than their unaffected co-twin. PMID:23756378
The WASH complex, an endosomal Arp2/3 activator, interacts with the Hermansky-Pudlak syndrome complex BLOC-1 and its cargo phosphatidylinositol-4-kinase type IIα. PMID:23676666
Relaxation response induces temporal transcriptome changes in energy metabolism, insulin secretion and inflammatory pathways. PMID:23650531
Phosphoproteomics data classify hematological cancer cell lines according to tumor type and sensitivity to kinase inhibitors. PMID:23628362
Interactions between immunity, proliferation and molecular subtype in breast cancer prognosis. PMID:23618380
Proteomics and the analysis of proteomic data: 2013 overview of current protein-profiling technologies. PMID:23504934
Jasmonate controls leaf growth by repressing cell proliferation and the onset of endoreduplication while maintaining a potential stand-by mode. PMID:23439917
Differential gene expression profiling and biological process analysis in proximal nerve segments after sciatic nerve transection. PMID:23437294
Immunohistochemical staining, laser capture microdissection, and filter-aided sample preparation-assisted proteomic analysis of target cell populations within tissue samples. PMID:23436586
Phase 2 clinical trial of rapamycin-resistant donor CD4+ Th2/Th1 (T-Rapa) cells after low-intensity allogeneic hematopoietic cell transplantation. PMID:23426943
Pivotal role of the muscle-contraction pathway in cryptorchidism and evidence for genomic connections with cardiomyopathy pathways in RASopathies. PMID:23410028
Galectin-9 functionally impairs natural killer cells in humans and mice. PMID:23408620
DNA methylation profile dynamics of tissue-dependent and differentially methylated regions during mouse brain development. PMID:23387509
Genome-wide analysis uncovers high frequency, strong differential chromosomal interactions and their associated epigenetic patterns in E2-mediated gene regulation. PMID:23368971
Differential gene expression profile of first-generation and second-generation rapamycin-resistant allogeneic T cells. PMID:23352462
Comparative transcriptome analyses reveal conserved and distinct mechanisms in ovine and bovine lactation. PMID:23324993
Genome-wide linkage analysis for human longevity: Genetics of Healthy Aging Study. PMID:23286790
Inhibiting EGF receptor or SRC family kinase signaling overcomes BRAF inhibitor resistance in melanoma. PMID:23242808
Validation of MIMGO: a method to identify differentially expressed GO terms in a microarray dataset. PMID:23232071
SNObase, a database for S-nitrosation modification. PMID:23129220
Estrogen receptor prevents p53-dependent apoptosis in breast cancer. PMID:23077249
Pathways involved in the synergistic activation of macrophages by lipoteichoic acid and hemoglobin. PMID:23071790
Proteomics of Streptococcus gordonii within a model developing oral microbial community. PMID:22989070
Association of differential gene expression with imatinib mesylate and omacetaxine mepesuccinate toxicity in lymphoblastoid cell lines. PMID:22917222
Dissecting the gene network of dietary restriction to identify evolutionarily conserved pathways and new functional genes. PMID:22912585
The transcription profile of Tax-3 is more similar to Tax-1 than Tax-2: insights into HTLV-3 potential leukemogenic properties. PMID:22911729
Positional differences of axon growth rates between sensory neurons encoded by Runx3. PMID:22903063
Comparative analysis of virus-host interactomes with a mammalian high-throughput protein complementation assay based on Gaussia princeps luciferase. PMID:22898364
Coordinated dynamic gene expression changes in the central nucleus of the amygdala during alcohol withdrawal. PMID:22827539
A comparative transcriptomic, fluxomic and metabolomic analysis of the response of Saccharomyces cerevisiae to increases in NADPH oxidation. PMID:22805527
Whole genome expression profile in neuroblastoma cells exposed to 1-methyl-4-phenylpyridine. PMID:22776087
Temporal network based analysis of cell specific vein graft transcriptome defines key pathways and hub genes in implantation injury. PMID:22720046
Potential role of multiple carbon fixation pathways during lipid accumulation in Phaeodactylum tricornutum. PMID:22672912
Reduction of dietary glycaemic load modifies the expression of microRNA potentially associated with energy balance and cancer pathways in pre-menopausal women. PMID:22647265
Biomechanical profiling of Caenorhabditis elegans motility. PMID:22554893
LDGIdb: a database of gene interactions inferred from long-range strong linkage disequilibrium between pairs of SNPs. PMID:22551073
DAVID-WS: a stateful web service to facilitate gene/protein list analysis. PMID:22543366
The Nematode Caenorhabditis elegans, Stress and Aging: Identifying the Complex Interplay of Genetic Pathways Following the Treatment with Humic Substances. PMID:22529848
Drug repositioning for personalized medicine. PMID:22494857
Rapid temporal changes in the expression of a set of neuromodulatory genes during alcohol withdrawal in the dorsal vagal complex: molecular evidence of homeostatic disturbance. PMID:22486438
Transcriptomics comparison between porcine adipose and bone marrow mesenchymal stem cells during in vitro osteogenic and adipogenic differentiation. PMID:22412878
Coexpression network analysis in abdominal and gluteal adipose tissue reveals regulatory genetic loci for metabolic syndrome and related phenotypes. PMID:22383892
Protein-based identification of quantitative trait loci associated with malignant transformation in two HER2+ cellular models of breast cancer. PMID:22357162
Systematic identification of the HSP90 candidate regulated proteome. PMID:22337586
Laser captured hepatocytes show association of butyrylcholinesterase gene loss and fibrosis progression in hepatitis C-infected drug users. PMID:22331678
Implications of functional similarity for gene regulatory interactions. PMID:22298814
Activation of cyclic AMP signaling leads to different pathway alterations in lesions of the adrenal cortex caused by germline PRKAR1A defects versus those due to somatic GNAS mutations. PMID:22259056
A chemokine gene expression signature derived from meta-analysis predicts the pathogenicity of viral respiratory infections. PMID:22189154
Global transcriptomic and proteomic responses of Dehalococcoides ethenogenes strain 195 to fixed nitrogen limitation. PMID:22179257
Array-based identification of common DNA methylation alterations in ulcerative colitis. PMID:22159500
Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells. PMID:22090374
Decidual cell polyploidization necessitates mitochondrial activity. PMID:22046353
Circulating microRNAs in patients with active pulmonary tuberculosis. PMID:21998423
A physical interaction network of dengue virus and human proteins. PMID:21911577
A functional genomic screen reveals novel host genes that mediate interferon-alpha's effects against hepatitis C virus. PMID:21888876
GO-based functional dissimilarity of gene sets. PMID:21884611
Nuclear colocalization of transcription factor target genes strengthens coregulation in yeast. PMID:21880591
Gene induction and repression during terminal erythropoiesis are mediated by distinct epigenetic changes. PMID:21860024
LRH-1 and PTF1-L coregulate an exocrine pancreas-specific transcriptional network for digestive function. PMID:21852532
GO Trimming: Systematically reducing redundancy in large Gene Ontology datasets. PMID:21798041
Transcriptome analysis of human diabetic kidney disease. PMID:21752957
Systemic signature of the lung response to respiratory syncytial virus infection. PMID:21731757
Activated TLR signaling in atherosclerosis among women with lower Framingham risk score: the multi-ethnic study of atherosclerosis. PMID:21698167
The implications of relationships between human diseases and metabolic subpathways. PMID:21695054
Identifier mapping performance for integrating transcriptomics and proteomics experimental results. PMID:21619611
Enriching for correct prediction of biological processes using a combination of diverse classifiers. PMID:21605426
Gitools: analysis and visualisation of genomic data using interactive heat-maps. PMID:21602921
CASCADE_SCAN: mining signal transduction network from high-throughput data based on steepest descent method. PMID:21575263
Resistance of renal cell carcinoma to sorafenib is mediated by potentially reversible gene expression. PMID:21559452
HER2 overexpression elicits a proinflammatory IL-6 autocrine signaling loop that is critical for tumorigenesis. PMID:21518778
Mesenchymal nuclear factor I B regulates cell proliferation and epithelial differentiation during lung maturation. PMID:21513708
dbOGAP - an integrated bioinformatics resource for protein O-GlcNAcylation. PMID:21466708
Gene expression profiles in stage I uterine serous carcinoma in comparison to grade 3 and grade 1 stage I endometrioid adenocarcinoma. PMID:21448288
GARNET--gene set analysis with exploration of annotation relations. PMID:21342555
Identification of differential protein interactors of lamin A and progerin. PMID:21327095
Reference Maps of human ES and iPS cell variation enable high-throughput characterization of pluripotent cell lines. PMID:21295703
Integrated genomic analysis of nodular tissue in macronodular adrenocortical hyperplasia: progression of tumorigenesis in a disorder associated with multiple benign lesions. PMID:21252250
Molecular profiles of drinking alcohol to intoxication in C57BL/6J mice. PMID:21223303
Computational biology for ageing. PMID:21115530
Prognostic transcriptional association networks: a new supervised approach based on regression trees. PMID:21098433
A genetic network model of cellular responses to lithium treatment and cocaine abuse in bipolar disorder. PMID:21092101
Microarray analysis reveals distinct gene expression profiles among different tumor histology, stage and disease outcomes in endometrial adenocarcinoma. PMID:21079744
A pilot study of circulating miRNAs as potential biomarkers of early stage breast cancer. PMID:21060830
Domain altering SNPs in the human proteome and their impact on signaling pathways. PMID:20886114
Transcriptome and expression profiling analysis revealed changes of multiple signaling pathways involved in immunity in the large yellow croaker during Aeromonas hydrophila infection. PMID:20858287
Dynamics of dendritic cell maturation are identified through a novel filtering strategy applied to biological time-course microarray replicates. PMID:20682054
Global expression studies in baker's yeast reveal target genes for the improvement of industrially-relevant traits: the cases of CAF16 and ORC2. PMID:20626860
MicroRNAs--regulators of signaling networks in dilated cardiomyopathy. PMID:20560044
GREAT improves functional interpretation of cis-regulatory regions. PMID:20436461
Transcriptome analysis and molecular signature of human retinal pigment epithelium. PMID:20360305
Linking toxicant physiological mode of action with induced gene expression changes in Caenorhabditis elegans. PMID:20331876
An adenoviral vaccine encoding full-length inactivated human Her2 exhibits potent immunogenicty and enhanced therapeutic efficacy without oncogenicity. PMID:20179231
Identifying Conserved and Divergent Transcriptional Modules by Cross-species Matrix Decomposition on Microarray Data. PMID:20148181
Ontological evaluation of transcriptional differences between sperm of infertile males and fertile donors using microarray analysis. PMID:20127162
Mouse Prkar1a haploinsufficiency leads to an increase in tumors in the Trp53+/- or Rb1+/- backgrounds and chemically induced skin papillomas by dysregulation of the cell cycle and Wnt signaling. PMID:20080939
Canine tumor cross-species genomics uncovers targets linked to osteosarcoma progression. PMID:20028558
Quantitative organellar proteomics analysis of rough endoplasmic reticulum from normal and acute pancreatitis rat pancreas. PMID:19954227
A comprehensive proteomics and transcriptomics analysis of Bacillus subtilis salt stress adaptation. PMID:19948795
Blocking the metabolism of starch breakdown products in Arabidopsis leaves triggers chloroplast degradation. PMID:19946617
Characterization of global microRNA expression reveals oncogenic potential of miR-145 in metastatic colorectal cancer. PMID:19843336
C. elegans dysferlin homolog fer-1 is expressed in muscle, and fer-1 mutations initiate altered gene expression of muscle enriched genes. PMID:19755517
Pathway analysis for intracellular Porphyromonas gingivalis using a strain ATCC 33277 specific database. PMID:19723305
Genetically correlated effects of selective breeding for high and low methamphetamine consumption. PMID:19689456
Harvesting candidate genes responsible for serious adverse drug reactions from a chemical-protein interactome. PMID:19629158
OHMM: a Hidden Markov Model accurately predicting the occupancy of a transcription factor with a self-overlapping binding motif. PMID:19583839
Next-generation tag sequencing for cancer gene expression profiling. PMID:19541910
Gene expression in peripheral blood leukocytes in monozygotic twins discordant for chronic fatigue: no evidence of a biomarker. PMID:19503787
Proteomics of Porphyromonas gingivalis within a model oral microbial community. PMID:19454014
Transcriptional analysis of fracture healing and the induction of embryonic stem cell-related genes. PMID:19415118
Systematic analysis of microRNA involved in resistance of the MCF-7 human breast cancer cell to doxorubicin. PMID:19412672
Ribosomal protein mRNAs are primary targets of regulation in RNase-L-induced senescence. PMID:19411840
Effects of lithium chloride on the gene expression profiles in Drosophila heads. PMID:19410610
Integrative decomposition procedure and Kappa statistics for the distinguished single molecular network construction and analysis. PMID:19390583
Developmental staging of male murine embryonic gonad by SAGE analysis. PMID:19376482
CNVVdb: a database of copy number variations across vertebrate genomes. PMID:19321736
GS2: an efficiently computable measure of GO-based similarity of gene sets. PMID:19289444
Impaired immune function in Gulf War Illness. PMID:19265525
Enhanced transcription of complement and coagulation genes in the absence of adaptive immunity. PMID:19200601
Large-scale detection of ubiquitination substrates using cell extracts and protein microarrays. PMID:19181856
Generation and analysis of expressed sequence tags from six developing xylem libraries in Pinus radiata D. Don. PMID:19159482
Gene expression patterns induced by HPV-16 L1 virus-like particles in leukocytes from vaccine recipients. PMID:19155521
Consistent deregulation of gene expression between human and murine MLL rearrangement leukemias. PMID:19155294
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. PMID:19131956
Mousepox in the C57BL/6 strain provides an improved model for evaluating anti-poxvirus therapies. PMID:19100593
Integrated Bioinformatics for Radiation-Induced Pathway Analysis from Proteomics and Microarray Data. PMID:19088860
Identification of G1-regulated genes in normally cycling human cells. PMID:19079774
MMSET deregulation affects cell cycle progression and adhesion regulons in t(4;14) myeloma plasma cells. PMID:19059936
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. PMID:19033363
A systems-based framework for understanding complex metabolic and cardiovascular disorders. PMID:19033210
DNA methylation profile of tissue-dependent and differentially methylated regions (T-DMRs) in mouse promoter regions demonstrating tissue-specific gene expression. PMID:18971312
Tools for interpreting large-scale protein profiling in microbiology. PMID:18946006
Adaptive history of single copy genes highly expressed in the term human placenta. PMID:18848617
The molecular basis of genistein-induced mitotic arrest and exit of self-renewal in embryonal carcinoma and primary cancer cell lines. PMID:18847459
Variations in the transcriptome of Alzheimer's disease reveal molecular networks involved in cardiovascular diseases. PMID:18842138
DAVID gene ID conversion tool. PMID:18841237
OKCAM: an ontology-based, human-centered knowledgebase for cell adhesion molecules. PMID:18790807
Identification of a common gene expression response in different lung inflammatory diseases in rodents and macaques. PMID:18612392
CoPub: a literature-based keyword enrichment tool for microarray data analysis. PMID:18442992
Bioinformatics and cancer research: building bridges for translational research. PMID:18258507
Defining functional distances over gene ontology. PMID:18221506
Acclimation of Saccharomyces cerevisiae to low temperature: a chemostat-based transcriptome analysis. PMID:17928405
Tags:
Tags
More detailed information about this field from each metasource.
pathology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:19.923820
molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:19.923820
mapping
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:19.923820
data mining
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:19.923820
Tags
More detailed information about this field from each metasource.
pathology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:19.923820
molecular interactions, pathways and networks
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:19.923820
mapping
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:19.923820
data mining
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:19.923820
pathology molecular interactions, pathways and networks mapping data mining
Need help integrating and/or managing biomedical data?