PAIR
Names
More detailed information about this field from each metasource.
PAIR
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:09.186876
pair
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:09.186876
Names
More detailed information about this field from each metasource.
PAIR
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:09.186876
pair
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:09.186876
Names
More detailed information about this field from each metasource.
PAIR
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:09.186876
pair
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:09.186876
Predicted Arabidopsis Interactome Resource
Description
More detailed information about this field from each metasource.
Predicted Arabidopsis Interactome Resource
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Experimentally reported molecular interactions and predicted interactions in A. thaliana. It predicts interactions by a fine-tuned support vector machine model that integrates indirect evidences for interaction, such as gene co-expressions, domain interactions, shared GO annotations, co-localizations, phylogenetic profile similarities and homologous interactions in other organisms. It features a user-friendly query interface, providing rich annotation on the relationships between two proteins.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:09.186876
Webpage:
http://www.cls.zju.edu.cn/pair/Webpage
More detailed information about this field from each metasource.
http://www.cls.zju.edu.cn/pair/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:09.186876
Publications:
Publications
More detailed information about this field from each metasource.
PAIR: the predicted Arabidopsis interactome resource
PMID: 20952401
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:09.186876
http://dx.doi.org/10.1093/nar/gkq938
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
PAIR: the predicted Arabidopsis interactome resource
PMID: 20952401
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:09.186876
http://dx.doi.org/10.1093/nar/gkq938
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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PAIR: the predicted Arabidopsis interactome resource
PubMed citations: 33.
33 articles citing: PAIR: the predicted Arabidopsis interactome resource
Extended mining of the oil biosynthesis pathway in biofuel plant Jatropha curcas by combined analysis of transcriptome and gene interactome data. PMID:34407772
HIR V2: a human interactome resource for the biological interpretation of differentially expressed genes via gene set linkage analysis. PMID:33677507
Predicted rat interactome database and gene set linkage analysis. PMID:33216897
Predicted functional interactome of Caenorhabditis elegans and a web tool for the functional interpretation of differentially expressed genes. PMID:33076954
The tapeworm interactome: inferring confidence scored protein-protein interactions from the proteome of Hymenolepis microstoma. PMID:32380953
Exploring dynamic protein-protein interactions in cassava through the integrative interactome network. PMID:32300157
MYCs and PIFs Act Independently in Arabidopsis Growth Regulation. PMID:32220954
JCDB: a comprehensive knowledge base for Jatropha curcas, an emerging model for woody energy plants. PMID:31874631
Computational Methods for Predicting Protein-Protein Interactions Using Various Protein Features. PMID:29927082
Prediction of cassava protein interactome based on interolog method. PMID:29222529
AtPID: a genome-scale resource for genotype-phenotype associations in Arabidopsis. PMID:27899679
Prediction of Protein-Protein Interactions by Evidence Combining Methods. PMID:27879651
Reconstruction and Application of Protein-Protein Interaction Network. PMID:27338356
Techniques for the Analysis of Protein-Protein Interactions in Vivo. PMID:27208310
PTIR: Predicted Tomato Interactome Resource. PMID:27121261
Genome-wide protein-protein interactions and protein function exploration in cyanobacteria. PMID:26490033
PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing transcriptional regulatory networks in plants. PMID:26476450
K-homology nuclear ribonucleoproteins regulate floral organ identity and determinacy in arabidopsis. PMID:25658099
Plant systems biology: insights, advances and challenges. PMID:24671625
Predicting whole genome protein interaction networks from primary sequence data in model and non-model organisms using ENTS. PMID:24015873
Chapter 2: Data-driven view of disease biology. PMID:23300408
Inferring the Brassica rapa Interactome Using Protein-Protein Interaction Data from Arabidopsis thaliana. PMID:23293649
Cyclin-dependent kinase E1 (CDKE1) provides a cellular switch in plants between growth and stress responses. PMID:23229550
The MORPH algorithm: ranking candidate genes for membership in Arabidopsis and tomato pathways. PMID:23204403
Systems analysis of plant functional, transcriptional, physical interaction, and metabolic networks. PMID:23110892
Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models. PMID:22737156
Diversity in genetic in vivo methods for protein-protein interaction studies: from the yeast two-hybrid system to the mammalian split-luciferase system. PMID:22688816
CML42-mediated calcium signaling coordinates responses to Spodoptera herbivory and abiotic stresses in Arabidopsis. PMID:22570470
AtPAN: an integrated system for reconstructing transcriptional regulatory networks in Arabidopsis thaliana. PMID:22397531
Computational identification of protein-protein interactions in rice based on the predicted rice interactome network. PMID:22196356
Advances in omics and bioinformatics tools for systems analyses of plant functions. PMID:22156726
PRIN: a predicted rice interactome network. PMID:21575196
The predicted Arabidopsis interactome resource and network topology-based systems biology analyses. PMID:21441435 - http://dx.doi.org/10.1093/nar/gkq938
Tags:
Tags
More detailed information about this field from each metasource.
metabolic and signaling pathways
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
protein-protein interactions
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
arabidopsis thaliana
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:09.186876
protein interactions
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:09.186876
protein interaction experiment
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:09.186876
model organisms
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:09.186876
phylogenetics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:09.186876
Tags
More detailed information about this field from each metasource.
metabolic and signaling pathways
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
protein-protein interactions
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
plant databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
arabidopsis thaliana
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
molecular interactions, pathways and networks
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:09.186876
protein interactions
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:09.186876
protein interaction experiment
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:09.186876
model organisms
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:09.186876
phylogenetics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:09.186876
metabolic and signaling pathways protein-protein interactions plant molecular interactions, pathways and networks protein interaction protein interaction experiment model organisms phylogenetics
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