Tag: virology

The Virus Pathogen Database and Analysis Resource (ViPR) is an integrated repository of data and analysis tools for multiple virus families, supported by the National Institute of Allergy and Infectious Diseases (NIAID) Bioinformatics Resource Center ...

The Integrated Microbial Genomes (IMG/M) aims to support the annotation, analysis and distribution of microbial genome and microbiome datasets sequenced at DOE's Joint Genome Institute (JGI). It also serves as a community resource for analysis and an ...

ViralZone is a web resource for viral genes and families, providing detailed molecular and epidemiological information, along with virion and genome figures. Each virus or family page gives easy access to UniProtKB/Swiss-Prot viral protein entries.

VirHostNet 2.0 integrates an extensive and original literature-curated dataset of virus/virus and virus/host protein-protein interactions complemented with publicly available data.

VIPERdb is a database for icosahedral virus capsid structures. The emphasis is on providing data from structural and computational analyses on these systems, as well as high quality renderings for visual exploration.

Since 2016, the IMG/VR database has provided access to the largest collection of viral sequences obtained from (meta)genomes. Here we present the 3rd version of IMG/VR, composed of 18,373 cultivated and 2,314,329 uncultivated viral genomes (UViGs), n ...

The euHCVdb is mainly oriented towards protein sequence, structure and function analyses and structural biology of Hepatitis C Virus.

VirusMentha is a collection of viral interactions manually curated from protein-protein databases that adhere to the IMEx consortium. This resource offers a series of tools to analyse selected proteins in the context of a network of interactions. vir ...

CAMPR3 (Collection of Anti-Microbial Peptides) has been generated to enhance research into AMP families. The collection is compatible with well-known databases such as PubMed and Uniprot with information like sequence, protein definition, accession n ...

The COVID-19 Data Portal enables researchers to upload, access and analyse COVID-19 related reference data and specialist datasets. The aim of the COVID-19 Data Portal is to facilitate data sharing and analysis, and to accelerate coronavirus research ...

This database is compiled from the human genome nucleotide sequences obtained mostly in the Human Genome Projects. The database makes it possible to continuously improve classification and characterization of retroviral families. The HERV database no ...

Gypsy database of mobile genetic elements

ViruSurf is a large public database of viral sequences and integrated and curated metadata from heterogeneous sources (RefSeq, GenBank, COG-UK and NMDC); it also exposes computed nucleotide and amino acid variants, called from original sequences. A G ...

COVDB contains cell culture, animal model, and clinical data on compounds with a proven or potential anti-coronavirus activity.

DPVweb provides a central source of information about viruses, viroids and satellites of plants, fungi and protozoa. Comprehensive taxonomic information, including brief descriptions of each family and genus, and classified lists of virus sequences a ...

VIRsiRNAdb contains information on experimentally validated Viral siRNA/shRNA which target viral genome regions. It provides efficacy information where available, as well as the siRNA sequence, viral target and subtype, as well as the target genomic ...

Dr.VIS collects and locates human disease-related viral integration sites. So far, about 600 sites covering 5 virus organisms and 11 human diseases are available. Integration sites in Dr.VIS are located against chromesome, cytoband, gene and refseq p ...

The Ebola and Hemorrhagic Fever Virus Database stems from the Hemorrhagic Fever Viruses (HFV) Database Project founded by Dr. Carla Kuiken in 2009 at the Los Alamos National Laboratory (LANL). The HFV Database was modeled on the Los Alamos HIV Databa ...

The GISAID Initiative promotes the international sharing of all influenza virus sequences, related clinical and epidemiological data associated with human viruses, and geographical as well as species-specific data associated with avian and other anim ...

The datasets list genes, environmental risk factors and autoantibodies in a number of polygenic diseases and provide KEGG pathway analysis etched out by susceptibility genes. Host/pathogen interactions are also characterised for herpes simplex, helic ...

VIDA is a new virus database that organizes open reading frames from viral genomic sequences into virus-specific homologous protein families. Conserved sequence regions of potential functional importance are identified and can be retrieved as sequenc ...

Genome-WIde Docking Database: 3D structures of protein complexes

Database and management system that provides an integrated set of bioinformatic tools to clone viral ORFs in the Gateway(R) system. It provides an interface to navigate through virus genome sequences, to design ORF-specific cloning primers, to valida ...

HCVIVdb is a database of published variations observed within the internal ribosome entry site (IRES) of the hepatitis C Virus.

Phylogenetic Exploration of Viruses and their Evolutionary Relationships

The COVID-19 ontology covers the role of molecular and cellular entities in virus-host-interactions, in the virus life cycle, as well as a wide spectrum of medical and epidemiological concepts linked to COVID-19.

CORDITE is The Curated CORona Drug InTERactions Database for SARS-CoV-2. CORDITE aggregates all available knowledge on potential drugs for SARS-CoV-2. Since the outbreak in 2019, researchers are trying to find effective drugs against the SARS-CoV-2 v ...

RNA virus genome database.

Non-profit organisation dedicated to the characterisation, conservation, production, distribution and characterisation of biological materials in the field of virology.

DrugRepV is a compendium of repurposed drugs and chemicals targeting epidemic and pandemic viruses.

The 2014 Ebola epidemic in West Africa has stirred international response and renewed efforts to develop effective preventative and treatment options. In response to a request for help from vaccine researchers, the UCSC Ebola Genome Browser was built ...

Bacteriological, clinical, genomic and proteomic database of H. influenzae.

The database of zoonotic and vector-borne viruses.

A database for single-cell screening of virus target cells in the animal kingdom.

DenvInD is a database containing dengue virus inhibitors for clinical and molecular research.

Tools for Influenza Activity and Surveillance. U.S. Influenza Surveillance System. Overview of Influenza Surveillance in the United States - CDC. Centers for Disease Control and Prevention. CDC twenty four seven. Saving Lives, Protecting People. ...

Interactions between HIV-1 and human proteins

Scottish laboratory data covering virology tests from the Tayside regions.

Virus Orthologous Groups.

A virus and host ncRNA-associated interaction repository with increased coverage and annotation.

Database of DNA clones, recombinant retroviruses and recombinant adenoviruses.

Databases of viral genomic information (genes, gene families, and genomes), and software to perform comparative genomics analyses

Committee for developing, refining, and maintaining a universal virus taxonomy. The goal is to categorize the multitude of known viruses into a single classification scheme that reflects their evolutionary relationships, i.e. their individual phyloge ...

CoV2ID provides a complete, quality checked and regularly updated list of oligonucleotides for SARS-CoV-2. The database evaluates available therapeutic and detection protocols according to the virus genetic diversity.

United States Swine Pathogen Database is integrating veterinary diagnostic laboratory sequence data to monitor emerging pathogens of swine.

ArVirInd is a knowledge-base of Arbo-Viral proteins from India and its neighbourhood. his is a annotated database, which acts as a repository of Protein sequences for arbo-viruses along with antigenic information. Users can search for protein sequenc ...

The Viral Host Range database represents a unique resource for the community to rapidly find, document analyze and disseminate data related to the range of hosts that a virus can infect. Over the years, countless host range experiments have been perf ...