VIRsiRNAdb
Names
More detailed information about this field from each metasource.
VIRsiRNAdb
metasource: Fairsharing.org
version: FAIRsharing.org: VIRsiRNAdb; VIRsiRNAdb; DOI: https://doi.org/10.25504/FAIRsharing.h4etg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:20.748750
virsirnadb
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:20.748750
Names
More detailed information about this field from each metasource.
VIRsiRNAdb
metasource: Fairsharing.orgversion: FAIRsharing.org: VIRsiRNAdb; VIRsiRNAdb; DOI: https://doi.org/10.25504/FAIRsharing.h4etg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:20.748750
virsirnadb
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:20.748750
Names
More detailed information about this field from each metasource.
VIRsiRNAdb
metasource: Fairsharing.orgversion: FAIRsharing.org: VIRsiRNAdb; VIRsiRNAdb; DOI: https://doi.org/10.25504/FAIRsharing.h4etg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:20.748750
virsirnadb
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:20.748750
This source may no longer be available. No known URL could be resolved successfully.
VIRsiRNAdb contains information on experimentally validated Viral siRNA/shRNA which target viral genome regions. It provides efficacy information where available, as well as the siRNA sequence, viral target and subtype, as well as the target genomic region.
Description
More detailed information about this field from each metasource.
VIRsiRNAdb contains information on experimentally validated Viral siRNA/shRNA which target viral genome regions. It provides efficacy information where available, as well as the siRNA sequence, viral target and subtype, as well as the target genomic region.
metasource: Fairsharing.orgversion: FAIRsharing.org: VIRsiRNAdb; VIRsiRNAdb; DOI: https://doi.org/10.25504/FAIRsharing.h4etg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Experimentally validated Viral siRNA/shRNA
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
VIRsiRNAdb is a curated database of experimentally validated viral siRNA/shRNA targeting diverse genes of 42 important human viruses including influenza, SARS and Hepatitis viruses. Additionally useful siRNA analysis tools are also provided e.g. siTarAlign for aligning the siRNA sequence with reference viral genomes or user defined sequences.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:20.748750
Webpage:
http://crdd.osdd.net/servers/virsirnadbWebpage
More detailed information about this field from each metasource.
http://crdd.osdd.net/servers/virsirnadb
metasource: Fairsharing.orgversion: FAIRsharing.org: VIRsiRNAdb; VIRsiRNAdb; DOI: https://doi.org/10.25504/FAIRsharing.h4etg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
http://crdd.osdd.net/servers/virsirnadb/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:20.748750
Publications:
Publications
More detailed information about this field from each metasource.
VIRsiRNAdb: a curated database of experimentally validated viral siRNA/shRNA
PMID: 22139916
metasource: Fairsharing.org
version: FAIRsharing.org: VIRsiRNAdb; VIRsiRNAdb; DOI: https://doi.org/10.25504/FAIRsharing.h4etg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:20.748750
http://dx.doi.org/10.1093/nar/GKR1147
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
VIRsiRNAdb: a curated database of experimentally validated viral siRNA/shRNA
PMID: 22139916
metasource: Fairsharing.org
version: FAIRsharing.org: VIRsiRNAdb; VIRsiRNAdb; DOI: https://doi.org/10.25504/FAIRsharing.h4etg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:20.748750
http://dx.doi.org/10.1093/nar/GKR1147
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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VIRsiRNAdb: a curated database of experimentally validated viral siRNA/shRNA
PubMed citations: 25.
25 articles citing: VIRsiRNAdb: a curated database of experimentally validated viral siRNA/shRNA
In Silico Methods for the Identification of Viral-Derived Small Interfering RNAs (vsiRNAs) and Their Application in Plant Genomics. PMID:35325416
A SARS-CoV-2 targeted siRNA-nanoparticle therapy for COVID-19. PMID:33992805
A small interfering RNA (siRNA) database for SARS-CoV-2. PMID:33893357
From genomes to molecular dynamics - A bottom up approach in extrication of SARS CoV-2 main protease inhibitors. PMID:33532671
Viral Vectors Applied for RNAi-Based Antiviral Therapy. PMID:32842491
PVsiRNAdb: a database for plant exclusive virus-derived small interfering RNAs. PMID:30307523
A review on current status of antiviral siRNA. PMID:29656441
aBiofilm: a resource of anti-biofilm agents and their potential implications in targeting antibiotic drug resistance. PMID:29156005
Time-series oligonucleotide count to assign antiviral siRNAs with long utility fit in the big data era. PMID:28905886
A database of breast oncogenic specific siRNAs. PMID:28821760
ASPsiRNA: A Resource of ASP-siRNAs Having Therapeutic Potential for Human Genetic Disorders and Algorithm for Prediction of Their Inhibitory Efficacy. PMID:28696921
Directional and reoccurring sequence change in zoonotic RNA virus genomes visualized by time-series word count. PMID:27808119
ZikaVR: An Integrated Zika Virus Resource for Genomics, Proteomics, Phylogenetic and Therapeutic Analysis. PMID:27633273
SMEpred workbench: A web server for predicting efficacy of chemicallymodified siRNAs. PMID:27603513
AVCpred: an integrated web server for prediction and design of antiviral compounds. PMID:27490990
siRNAmod: A database of experimentally validated chemically modified siRNAs. PMID:26818131
Databases for Microbiologists. PMID:26013493
Computational design of artificial RNA molecules for gene regulation. PMID:25577393
Unraveling the web of viroinformatics: computational tools and databases in virus research. PMID:25428870
Effects of different target sites on antisense RNA-mediated regulation of gene expression. PMID:24411463
VIRsiRNApred: a web server for predicting inhibition efficacy of siRNAs targeting human viruses. PMID:24330765
AVPdb: a database of experimentally validated antiviral peptides targeting medically important viruses. PMID:24285301
HIPdb: a database of experimentally validated HIV inhibiting peptides. PMID:23359817
New treatments for influenza. PMID:22973873
AVPpred: collection and prediction of highly effective antiviral peptides. PMID:22638580 - http://dx.doi.org/10.1093/nar/GKR1147
Tags:
Tags
More detailed information about this field from each metasource.
dna sequence data
metasource: Fairsharing.org
version: FAIRsharing.org: VIRsiRNAdb; VIRsiRNAdb; DOI: https://doi.org/10.25504/FAIRsharing.h4etg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
rna interference
metasource: Fairsharing.org
version: FAIRsharing.org: VIRsiRNAdb; VIRsiRNAdb; DOI: https://doi.org/10.25504/FAIRsharing.h4etg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
short hairpin rna
metasource: Fairsharing.org
version: FAIRsharing.org: VIRsiRNAdb; VIRsiRNAdb; DOI: https://doi.org/10.25504/FAIRsharing.h4etg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
small interfering rna
metasource: Fairsharing.org
version: FAIRsharing.org: VIRsiRNAdb; VIRsiRNAdb; DOI: https://doi.org/10.25504/FAIRsharing.h4etg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
viral genome
metasource: Fairsharing.org
version: FAIRsharing.org: VIRsiRNAdb; VIRsiRNAdb; DOI: https://doi.org/10.25504/FAIRsharing.h4etg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
rna sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
functional, regulatory and non-coding rna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:20.748750
virology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:20.748750
small molecules
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:20.748750
data submission, annotation and curation
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:20.748750
Tags
More detailed information about this field from each metasource.
dna sequence data
metasource: Fairsharing.orgversion: FAIRsharing.org: VIRsiRNAdb; VIRsiRNAdb; DOI: https://doi.org/10.25504/FAIRsharing.h4etg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
rna interference
metasource: Fairsharing.orgversion: FAIRsharing.org: VIRsiRNAdb; VIRsiRNAdb; DOI: https://doi.org/10.25504/FAIRsharing.h4etg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
short hairpin rna
metasource: Fairsharing.orgversion: FAIRsharing.org: VIRsiRNAdb; VIRsiRNAdb; DOI: https://doi.org/10.25504/FAIRsharing.h4etg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
small interfering rna
metasource: Fairsharing.orgversion: FAIRsharing.org: VIRsiRNAdb; VIRsiRNAdb; DOI: https://doi.org/10.25504/FAIRsharing.h4etg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
viral genome
metasource: Fairsharing.orgversion: FAIRsharing.org: VIRsiRNAdb; VIRsiRNAdb; DOI: https://doi.org/10.25504/FAIRsharing.h4etg; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
rna sequence databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
functional, regulatory and non-coding rna
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:20.748750
virology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:20.748750
small molecules
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:20.748750
data submission, annotation and curation
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:20.748750
dna sequences rna interference short hairpin rna small interfering rna viral genome rna sequence functional, regulatory and non-coding rna virology small molecule data submission, annotation and curation
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