Tag: viral genome

The Influenza Research Database (IRD) is a free, open, publicly-accessible resource funded by the U.S. National Institute of Allergy and Infectious Diseases through the Bioinformatics Resource Centers program. IRD provides a comprehensive, integrated ...

The Virus Pathogen Database and Analysis Resource (ViPR) is an integrated repository of data and analysis tools for multiple virus families, supported by the National Institute of Allergy and Infectious Diseases (NIAID) Bioinformatics Resource Center ...

ViralZone is a web resource for viral genes and families, providing detailed molecular and epidemiological information, along with virion and genome figures. Each virus or family page gives easy access to UniProtKB/Swiss-Prot viral protein entries.

The Stanford HIV Drug Resistance Database (HIVDB) is an essential resource for public health officials monitoring ADR and TDR, for scientists developing new ARV drugs, and for HIV care providers managing patients with HIVDR.

VIPERdb is a database for icosahedral virus capsid structures. The emphasis is on providing data from structural and computational analyses on these systems, as well as high quality renderings for visual exploration.

The euHCVdb is mainly oriented towards protein sequence, structure and function analyses and structural biology of Hepatitis C Virus.

NCBI Viral Genomes Resource is a collection of virus genomic sequences that provides curated sequence data, related information and tools. It includes all complete viral genome sequences deposited in the International Nucleotide Sequence Database Col ...

This database is compiled from the human genome nucleotide sequences obtained mostly in the Human Genome Projects. The database makes it possible to continuously improve classification and characterization of retroviral families. The HERV database no ...

Since 2016, the IMG/VR database has provided access to the largest collection of viral sequences obtained from (meta)genomes. The 3rd version of IMG/VR (Sept 2020) is composed of 18,373 cultivated and 2,314,329 uncultivated viral genomes (UViGs), nea ...

ViruSurf is a large public database of viral sequences and integrated and curated metadata from heterogeneous sources (RefSeq, GenBank, COG-UK and NMDC); it also exposes computed nucleotide and amino acid variants, called from original sequences. A G ...

COVDB contains cell culture, animal model, and clinical data on compounds with a proven or potential anti-coronavirus activity.

DPVweb provides a central source of information about viruses, viroids and satellites of plants, fungi and protozoa. Comprehensive taxonomic information, including brief descriptions of each family and genus, and classified lists of virus sequences a ...

VIRsiRNAdb contains information on experimentally validated Viral siRNA/shRNA which target viral genome regions. It provides efficacy information where available, as well as the siRNA sequence, viral target and subtype, as well as the target genomic ...

Gene regulation in bacteriophages

The Ebola and Hemorrhagic Fever Virus Database stems from the Hemorrhagic Fever Viruses (HFV) Database Project founded by Dr. Carla Kuiken in 2009 at the Los Alamos National Laboratory (LANL). The HFV Database was modeled on the Los Alamos HIV Databa ...

IVDB hosts complete genome sequences of influenza A virus generated by BGI and curates all other published influenza virus sequences after expert annotations. IVDB provides a series of tools and viewers for analyzing the viral genomes, genes, genetic ...

VIDA is a new virus database that organizes open reading frames from viral genomic sequences into virus-specific homologous protein families. Conserved sequence regions of potential functional importance are identified and can be retrieved as sequenc ...

Phylogenetic Exploration of Viruses and their Evolutionary Relationships

Interactions between HIV-1 and human proteins

The Virus Variation Resource is a value-added viral sequence data resource hosted by the National Center for Biotechnology Information. The resource is located at http://www.ncbi.nlm.nih.gov/genome/viruses/variation/ and includes modules for seven vi ...

A reference collection of viral ORFs and their clones

A knowledge database for the Hepatitis B Virus

Prokaryotic virus orthologous groups of proteins

microRNAs targets of the influenza virus

A database of Papillomaviridae family of viruses

PCR primer pairs for detecting RNA virus-mediated infectious diseases

Poxvirus genomic sequences and gene annotation

The Viral Bioinformatics Resource Center (VBRC) is one of eight NIH-sponsored Bioinformatics Resource Centers (http://www.brc-central.org/) established to provide informational and analytical resources to the scientific community. The goal of these C ...

Influenza is one of the most important respiratory infectious diseases of humans. It is estimated that influenza is responsible for 250,000 to 500,000 deaths annually. Genome sequences of currently circulating virus isolates are important sources of ...

The Hepatitis C Virus (HCV) sequence database is a project funded by the Division of Microbiology and Infectious Diseases of the National Institute of Allergies and Infectious Diseases (NIAID). We strive to present HCV sequences and associated data i ...

SARS-CoV RNA SSS DATABASE is a database of the predicted RNA secondary structural sequences of six SARS coronavirus complete genomes which were sequenced and submitted to GenBank by the separate sequencing and research groups from countries and areas ...

The HIV Drug Resistance Database is a compilation of mutations in HIV genes that confer resistance to anti-HIV drugs. Currently, 673 mutations to RT, Protease, Env, Gag, Integrase, FIV RT and SIV RT are stored. The database may be searched by gene, c ...