siRNAdb

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siRNAdb

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:31.790457

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sirnadb

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:31.790457

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Other names: sirnadb

The siRNA database provides a gene-centric view of human siRNA experimental data, including siRNAs of known efficacy and siRNAs predicted to be of high efficacy by siSearch. Linked to these sequences is information including siRNA thermodynamic properties and the potential for sequence specific off-target effects. The database provides the user with sufficient data to evaluate the siRNAs potential inhibition and sequence-specific off target effects. In release 1.0 there are 405 experimentally verified siRNAs targeting 50 genes, an average of 8 siRNAs/gene. It contains records and siRNA predictions for all genes in the REFSEQ curated human sequence set (20,410 "NM" sequences and 6767 "XM" sequences). The database is available at http://sirna.sbc.su.se.

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Publications

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siRNAdb: a database of siRNA sequences
PMID: 15608162

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:31.790457

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• siRNAdb: a database of siRNA sequences PubMed citations: 19.

  19 articles citing: siRNAdb: a database of siRNA sequences

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  In Silico Methods for the Identification of Viral-Derived Small Interfering RNAs (vsiRNAs) and Their Application in Plant Genomics. PMID:35325416

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  PVsiRNAdb: a database for plant exclusive virus-derived small interfering RNAs. PMID:30307523

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  SiRNA silencing efficacy prediction based on a deep architecture. PMID:30255786

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  A comprehensive review of web-based resources of non-coding RNAs for plant science research. PMID:29989090

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  RNA interference: new mechanistic and biochemical insights with application in oral cancer therapy. PMID:29922059

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  A database of breast oncogenic specific siRNAs. PMID:28821760

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  siRNAmod: A database of experimentally validated chemically modified siRNAs. PMID:26818131

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  VIRsiRNAdb: a curated database of experimentally validated viral siRNA/shRNA. PMID:22139916

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  HIVsirDB: a database of HIV inhibiting siRNAs. PMID:22022467

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  The construction of transgenic and gene knockout/knockin mouse models of human disease. PMID:21800101

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  Variables and strategies in development of therapeutic post-transcriptional gene silencing agents. PMID:21785698

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  Databases and resources for human small non-coding RNAs. PMID:21504869

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  DNAzyme-mediated recovery of small recombinant RNAs from a 5S rRNA-derived chimera expressed in Escherichia coli. PMID:21134283

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  Toward a complete in silico, multi-layered embryonic stem cell regulatory network. PMID:20890967

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  Asymmetrically designed siRNAs and shRNAs enhance the strand specificity and efficacy in RNAi. PMID:19771234

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  MicroRNAs and cardiac pathology. PMID:19434076

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  A construct with fluorescent indicators for conditional expression of miRNA. PMID:18840295

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  Essential notes regarding the design of functional siRNAs for efficient mammalian RNAi. PMID:17057367

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  PPD v1.0--an integrated, web-accessible database of experimentally determined protein pKa values. PMID:16381845

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rna sequence databases

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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functional, regulatory and non-coding rna

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:31.790457

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gene transcripts

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:31.790457

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database management

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:31.790457

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rna

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:31.790457

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sequence analysis

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:31.790457

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rna sequence functional, regulatory and non-coding rna gene transcripts data management rna sequence analysis