FunShift

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FunShift

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:17.207526

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funshift

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:17.207526

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Other names: funshift

Functional divergence between the subfamilies of a protein domain family

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Publications:

Publications

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FunShift: a database of function shift analysis on protein subfamilies
PMID: 15608176

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:17.207526

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• FunShift: a database of function shift analysis on protein subfamilies PubMed citations: 16.

  16 articles citing: FunShift: a database of function shift analysis on protein subfamilies

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  HMMER Cut-off Threshold Tool (HMMERCTTER): Supervised classification of superfamily protein sequences with a reliable cut-off threshold. PMID:29579071

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  An overview of comparative modelling and resources dedicated to large-scale modelling of genome sequences. PMID:28777078

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  The language of the protein universe. PMID:26451980

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  Functional classification of CATH superfamilies: a domain-based approach for protein function annotation. PMID:26139634

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  Recent advances in functional region prediction by using structural and evolutionary information - Remaining problems and future extensions. PMID:24688747

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  Cube - an online tool for comparison and contrasting of protein sequences. PMID:24363790

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  SPEER-SERVER: a web server for prediction of protein specificity determining sites. PMID:22689646

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  A phylogenetic analysis of normal modes evolution in enzymes and its relationship to enzyme function. PMID:22651983

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  Characterization and gene expression analysis of the cir multi-gene family of Plasmodium chabaudi chabaudi (AS). PMID:22458863

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  Cube-DB: detection of functional divergence in human protein families. PMID:22139934

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  GeMMA: functional subfamily classification within superfamilies of predicted protein structural domains. PMID:19923231

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  SDR: a database of predicted specificity-determining residues in proteins. PMID:18927118

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  Exploring the structure and function paradigm. PMID:18554899

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  The human phylome. PMID:17567924

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  Identifying dramatic selection shifts in phylogenetic trees. PMID:17288568

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  Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment. PMID:16845078

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protein sequence databases

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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protein domain databases; protein classification

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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gene and protein families

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:17.207526

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proteins

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:17.207526

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protein folds and structural domains

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:17.207526

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function analysis

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:17.207526

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protein sequence protein domains and classification gene and protein families proteins protein folds and structural domains function analysis