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Protein Clusters

Related protein sequences (clusters)of Reference Sequence proteins encoded by complete genomes

Description

More detailed information about this field from each metasource.

Related protein sequences (clusters)of Reference Sequence proteins encoded by complete genomes

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

Webpage:

http://www.ncbi.nlm.nih.gov/sites/entrez?db=proteinclusters

Webpage

More detailed information about this field from each metasource.

http://www.ncbi.nlm.nih.gov/sites/entrez?db=proteinclusters

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

Tags:

Tags
More detailed information about this field from each metasource.

protein sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

protein domain databases; protein classification
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

protein sequence protein domains and classification

More to explore:

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ProtClustDB

ProtClustDB is a collection of related protein sequences (clusters) consisting of Reference Sequence proteins encoded by complete genomes. This database contains both curated and non-curated clusters.

Entrez Protein Clusters

A collection of related protein sequences (clusters) consists of proteins derived from the annotations of whole genomes, organelles and plasmids. It currently limited to Archaea, Bacteria, Plants, Fun ...

Entrez Genomes

NCBI's collection of databases for the analysis of complete and unfinished viral, pro- and eukaryotic genomes

Clusters of Orthologous Groups of Proteins: Phylogenetic classification of proteins encoded in complete genomes

Clusters of Orthologous Groups of proteins (COGs) were delineated by comparing protein sequences encoded in complete genomes, representing major phylogenetic lineages. Each COG consists of individual ...

InterDom

Putative protein domain interactions

iPfam

A database of Pfam domain interactions

LenVarDB

Database of length variantion in protein domains

Conserved Domain Database

The Conserved Domain Database (CDD) brings together several collections of multiple sequence alignments representing conserved domains, including NCBI-curated domains, which use 3D-structure informati ...

OPTIC

Orthologous and Paralogous Transcripts in Clades

The Protein Database

The Entrez Protein search and retrieval system contains protein entries that have been compiled from a variety of sources, including SwissProt, PIR, PRF, PDB, and translations from annotated coding re ...

UniGene

<<<!!!<<< This repository is no longer available>>>!!!>>>. Although the web pages are no longer available, you will still be able to download the final UniGene builds as static content from the FTP s ...

ProtoNet

This resource is a hierarchical clustering of UniProt protein sequences into hierarchical trees. This resource allows for the study of sub-family and super-family of a protein, using UniRef50 clusters ...

TransportDB

Sequences and classification of predicted membrane transporters encoded in complete genomes

ADDA - A Domain Database

ADDA is a global clustering of protein sequences into protein domains and protein domain families. The database currently contains domains for 1.5 Mio sequences from UniProt, ENSEMBL, and other sequen ...

iProClass

The iProClass database provides value-added information reports for UniProtKB and unique NCBI Entrez protein sequences in UniParc, with links to over 175 biological databases, including databases for ...

NCBI Gene

The Entrez Global Query Cross-Database Search System is a federated search engine, or web portal that allows users to search many discrete health sciences databases at the National Center for Biotechn ...

NCBI Viral Genomes Resource

NCBI Viral Genomes Resource is a collection of virus genomic sequences that provides curated sequence data, related information and tools. It includes all complete viral genome sequences deposited in ...

FunShift

Functional divergence between the subfamilies of a protein domain family

Molecular Modeling Database

The Molecular Modeling Database (MMDB), as part of the Entrez system, facilitates access to structure data by connecting them with associated literature, protein and nucleic acid sequences, chemicals, ...

NCBI Bookshelf

Searchable collection of biomedical books linked to terms in PubMed abstracts; when viewing an abstract, click on Books link to see phrases in abstract hyperlinked to book sections.

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Data is amalgamated and only retrieved periodically.
Some of the resources used by the system:

® FAIRsharing.org
® Bioontology/Bioportal Terms
® Nucleic Acid Research - Database
® re3data.org
® bio.tools
® PubMed - Courtesy of the U.S. National Library of Medicine