R30P5K last accessed: 2022-11-04

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:59.904556

mirbase
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:59.904556

Other names: mirbase

The miRBase database is a searchable database of published miRNA sequences and annotation. Each entry in miRBase represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR). Both hairpin and mature sequences are available for searching and browsing, and entries can also be retrieved by name, keyword, references and annotation.

Webpage:

http://www.mirbase.org/

Licence:

Name: Public Domain
URL: ftp://mirbase.org/pub/mirbase/CURRENT/README

Publications: (7)

Publications
More detailed information about this field from each metasource.

miRBase: annotating high confidence microRNAs using deep sequencing data
PMID: 24275495
metasource: Fairsharing.org
version: FAIRsharing.org: miRBase; miRBase; DOI: https://doi.org/10.25504/FAIRsharing.hmgte8; Last edited: March 4, 2021, 2:57 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

miRBase: tools for microRNA genomics
PMID: 17991681
metasource: Fairsharing.org
version: FAIRsharing.org: miRBase; miRBase; DOI: https://doi.org/10.25504/FAIRsharing.hmgte8; Last edited: March 4, 2021, 2:57 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

miRBase: microRNA sequences, targets and gene nomenclature
PMID: 16381832
metasource: Fairsharing.org
version: FAIRsharing.org: miRBase; miRBase; DOI: https://doi.org/10.25504/FAIRsharing.hmgte8; Last edited: March 4, 2021, 2:57 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

miRBase: integrating microRNA annotation and deep-sequencing data
PMID: 21037258
metasource: Fairsharing.org
version: FAIRsharing.org: miRBase; miRBase; DOI: https://doi.org/10.25504/FAIRsharing.hmgte8; Last edited: March 4, 2021, 2:57 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:59.904556

miRBase: from microRNA sequences to function
PMID: 30423142
metasource: Fairsharing.org
version: FAIRsharing.org: miRBase; miRBase; DOI: https://doi.org/10.25504/FAIRsharing.hmgte8; Last edited: March 4, 2021, 2:57 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

The microRNA Registry
PMID: 14681370
metasource: Fairsharing.org
version: FAIRsharing.org: miRBase; miRBase; DOI: https://doi.org/10.25504/FAIRsharing.hmgte8; Last edited: March 4, 2021, 2:57 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

http://dx.doi.org/10.1093/nar/gky1141
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

miRBase: annotating high confidence microRNAs using deep sequencing data PubMed citations: 2466.

2466 articles citing: miRBase: annotating high confidence microRNAs using deep sequencing data

Predicting Multiple Types of Associations Between miRNAs and Diseases Based on Graph Regularized Weighted Tensor Decomposition. PMID:35910021
Application of Bidirectional Generative Adversarial Networks to Predict Potential miRNAs Associated With Diseases. PMID:35903359
HIV-1 Tat and cocaine impact astrocytic energy reservoirs and epigenetic regulation by influencing the LINC01133-hsa-miR-4726-5p-NDUFA9 axis. PMID:35892093
TLNPMD: Prediction of miRNA-Disease Associations Based on miRNA-Drug-Disease Three-Layer Heterogeneous Network. PMID:35889243
Characterization of Adrenal miRNA-Based Dysregulations in Cushing's Syndrome. PMID:35887024
Haemolysis Detection in MicroRNA-Seq from Clinical Plasma Samples. PMID:35886071
Maternal Body Mass Index Is Associated with Profile Variation in Circulating MicroRNAs at First Trimester of Pregnancy. PMID:35885031
Polyadenylation ligation-mediated sequencing (PALM-Seq) characterizes cell-free coding and non-coding RNAs in human biofluids. PMID:35858042
In silico Identification of miRNAs and Their Targets in Cluster Bean for Their Role in Development and Physiological Responses. PMID:35846150
Multivariate competing endogenous RNA network characterization for cancer microRNA biomarker discovery: a novel bioinformatics model with application to prostate cancer metastasis. PMID:35821682
Critical Roles of Circular RNA in Tumor Metastasis via Acting as a Sponge of miRNA/isomiR. PMID:35806027
Comparative bioinformatics analysis and abiotic stress responses of expansin proteins in Cucurbitaceae members: watermelon and melon. PMID:35804193
Whole Transcriptome Sequencing of Peripheral Blood Shows That Immunity/GnRH/PI3K-Akt Pathways Are Associated With Opioid Use Disorder. PMID:35800019
Extending and Running the Mosquito Small RNA Genomics Resource Pipeline. PMID:35796973
Construction of a Novel circRNA/miRNA/mRNA Regulatory Network to Explore the Potential Pathogenesis of Wilson's Disease. PMID:35784724
Molecular Dissection of a Conserved Cluster of miRNAs Identifies Critical Structural Determinants That Mediate Differential Processing. PMID:35784477
Characterization of microRNA and gene expression in the cochlea of an echolocating bat (Rhinolophus affinis). PMID:35784079
Structural insights into dsRNA processing by Drosophila Dicer-2-Loqs-PD. PMID:35768513
Evolution of miRNA-Binding Sites and Regulatory Networks in Cichlids. PMID:35748824
MDSCMF: Matrix Decomposition and Similarity-Constrained Matrix Factorization for miRNA-Disease Association Prediction. PMID:35741782
Identification of miRNAs in Response to Sweet Potato Weevil (Cylas formicarius) Infection by sRNA Sequencing. PMID:35741742
NGS-identified miRNAs in Canine Mammary Gland Tumors Show Unexpected Expression Alterations in qPCR Analysis. PMID:35738588
MicroRNA-22-3p and MicroRNA-149-5p Inhibit Human Hepatocellular Carcinoma Cell Growth and Metastasis Properties by Regulating Methylenetetrahydrofolate Reductase. PMID:35723348
Integration of Transcriptomics Data and Metabolomic Data Using Biomedical Literature Mining and Pathway Analysis. PMID:35713871
MicroRNAs: master regulators in host-parasitic protist interactions. PMID:35702995
EnhFFL: A database of enhancer mediated feed-forward loops for human and mouse. PMID:35694152
Characteristics of miRNAs Present in Bovine Sperm and Associations With Differences in Fertility. PMID:35663333
Dysregulation of microRNAs and tRNA-derived ncRNAs in mesothelial and mesothelioma cell lines after asbestiform fiber exposure. PMID:35654808
The microRNA cluster C19MC confers differentiation potential into trophoblast lineages upon human pluripotent stem cells. PMID:35654791
ITAS: Integrated Transcript Annotation for Small RNA. PMID:35645337
The evolutionary history of small RNAs in Solanaceae. PMID:35642548
Menopausal Transition: Prospective Study of Estrogen Status, Circulating MicroRNAs, and Biomarkers of Bone Metabolism. PMID:35634507
miR-486-5p and miR-22-3p Enable Megakaryocytic Differentiation of Hematopoietic Stem and Progenitor Cells without Thrombopoietin. PMID:35628168
Integrated Expression Analysis of Small RNA, Degradome and Microarray Reveals Complex Regulatory Action of miRNA during Prolonged Shade in Swarnaprabha Rice. PMID:35625525
Small RNAs are differentially expressed in autoimmune and non-autoimmune diabetes and controls. PMID:35616612
Circulating extracellular vesicles exhibit a differential miRNA profile in gestational diabetes mellitus pregnancies. PMID:35613088
Testicular miRNAs and tsRNAs provide insight into gene regulation during overwintering and reproduction of Onychostoma macrolepis. PMID:35595880
Cx43-mediated sorting of miRNAs into extracellular vesicles. PMID:35593040
Analysis of miRNAs responsive to long-term calcium deficiency in tef (Eragrostis tef (Zucc.) Trotter). PMID:35582629
Circulating non-coding RNAs in recurrent and metastatic ovarian cancer. PMID:35582568
Dissection of the microRNA Network Regulating Hedgehog Signaling in Drosophila. PMID:35573695
The Role of Non-Coding RNAs in the Human Placenta. PMID:35563893
RNA-Seq, Bioinformatic Identification of Potential MicroRNA-like Small RNAs in the Edible Mushroom Agaricus bisporus and Experimental Approach for Their Validation. PMID:35563314
The Role of Epigenetics in Primary Biliary Cholangitis. PMID:35563266
Targeting Genetic Modifiers of HBG Gene Expression in Sickle Cell Disease: The miRNA Option. PMID:35553407
Comprehensive microRNA-seq transcriptomic profiling across 11 organs, 4 ages, and 2 sexes of Fischer 344 rats. PMID:35551205
New 3D graphical representation for RNA structure analysis and its application in the pre-miRNA identification of plants. PMID:35548744
Novel approach to identify putative Epstein-Barr-virus microRNAs regulating host cell genes with relevance in tumor biology and immunology. PMID:35529676
Prediction of binding miRNAs involved with immune genes to the SARS-CoV-2 by using sequence features extraction and One-class SVM. PMID:35528315
Heterogeneous graph inference based on similarity network fusion for predicting lncRNA-miRNA interaction. PMID:35496629
Sex-Specific Differences in MicroRNA Expression During Human Fetal Lung Development. PMID:35480332
Prediction of Site Directed miRNAs as Key Players of Transcriptional Regulators Against Influenza C Virus Infection Through Computational Approaches. PMID:35463952
miRNA Profiling and Its Role in Multi-Omics Regulatory Networks Connected with Somaclonal Variation in Cucumber (Cucumis sativus L.). PMID:35457133
miR-195-5p Regulates Tight Junctions Expression via Claudin-2 Downregulation in Ulcerative Colitis. PMID:35453669
Small RNA Sequencing Revealed that miR4415, a Legume-Specific miRNA, was Involved in the Cold Acclimation of Ammopiptanthus nanus by Targeting an L-Ascorbate Oxidase Gene and Regulating the Redox State of Apoplast. PMID:35444684
Recent advances and potential applications of cross-kingdom movement of miRNAs in modulating plant's disease response. PMID:35442163
Temporal Dynamic Transcriptome Landscape Reveals Regulatory Network During the Early Differentiation of Female Strobilus Buds in Ginkgo biloba. PMID:35432408
Biogenesis, Functions, Interactions, and Resources of Non-Coding RNAs in Plants. PMID:35409060
Circulating and Platelet MicroRNAs in Cardiovascular Risk Assessment and Antiplatelet Therapy Monitoring. PMID:35407371
An Integration of MicroRNA and Transcriptome Sequencing Analysis Reveal Regulatory Roles of miRNAs in Response to Chilling Stress in Wild Rice. PMID:35406957
Admixture of divergent genomes facilitates hybridization across species in the family Brassicaceae. PMID:35403705
Cell-Crossing Functional Network Driven by microRNA-125a Regulates Endothelial Permeability and Monocyte Trafficking in Acute Inflammation. PMID:35401562
The Role of microRNA in the Inflammatory Response of Wound Healing. PMID:35386721
Comparative analysis of herbivory responsive miRNAs to delineate pod borer (Helicoverpa armigera) resistance mechanisms in Cajanus cajan and its wild relative Cajanus scarabaeoides. PMID:35366099
Nuclear microRNA-466c regulates Vegfa expression in response to hypoxia. PMID:35358280
Evidence of antagonistic predictive effects of miRNAs in breast cancer cohorts through data-driven networks. PMID:35338170
Promotion of tumorigenesis by miR-1260b-targeting CASP8: Potential diagnostic and prognostic marker for breast cancer. PMID:35325509
Integrated Analysis of the miRNAome and Transcriptome Reveals miRNA-mRNA Regulatory Networks in Catharanthus roseus Through Cuscuta campestris-Mediated Infection With "Candidatus Liberibacter asiaticus". PMID:35308338
microRNA profile of Hermetia illucens (black soldier fly) and its implications on mass rearing. PMID:35298540
Genome sequence and population genomics provide insights into chromosomal evolution and phytochemical innovation of Hippophae rhamnoides. PMID:35244328
The limits of human microRNA annotation have been met. PMID:35236776
Contribution of Host miRNA-223-3p to SARS-CoV-Induced Lung Inflammatory Pathology. PMID:35229638
MicroRNA editing patterns in Huntington's disease. PMID:35210471
Network Approaches to Study Endogenous RNA Competition and Its Impact on Tissue-Specific microRNA Functions. PMID:35204832
Integration of Small RNA and Transcriptome Sequencing Reveal the Roles of miR395 and ATP Sulfurylase in Developing Seeds of Chinese Kale. PMID:35185948
Circulating hsa-let-7e-5p and hsa-miR-125a-5p as Possible Biomarkers in the Diagnosis of Major Depression and Bipolar Disorders. PMID:35178127
Arabidopsis apoplastic fluid contains sRNA- and circular RNA-protein complexes that are located outside extracellular vesicles. PMID:35171271
Characterization of the 3'UTR of the BTD gene and identification of regulatory elements and microRNAs. PMID:35167647
ASRmiRNA: Abiotic Stress-Responsive miRNA Prediction in Plants by Using Machine Learning Algorithms with Pseudo K-Tuple Nucleotide Compositional Features. PMID:35163534
The Biogenesis of miRNAs and Their Role in the Development of Amyotrophic Lateral Sclerosis. PMID:35159383
Disparities in Lung Cancer: miRNA Isoform Characterization in Lung Adenocarcinoma. PMID:35159038
Role of Fasciola hepatica Small RNAs in the Interaction With the Mammalian Host. PMID:35155272
The Roles of microRNA-Long Non-coding RNA-mRNA Networks in the Regulation of Leaf and Flower Development in Liriodendron chinense. PMID:35154228
An improved repertoire of splicing variants and their potential roles in Arabidopsis photomorphogenic development. PMID:35139889
CircSCAPER contributes to IL-1β-induced osteoarthritis in vitro via miR-140-3p/EZH2 axis. PMID:35103493
microRNA-252 and FoxO repress inflammaging by a dual inhibitory mechanism on Dawdle-mediated TGF-β pathway in Drosophila. PMID:35100390
T-cell activation decreases miRNA-15a/16 levels to promote MEK1-ERK1/2-Elk1 signaling and proliferative capacity. PMID:35085550
Monocyte miRNAs Are Associated With Type 2 Diabetes. PMID:35073575
Identification of miRNA-Small Molecule Associations by Continuous Feature Representation Using Auto-Encoders. PMID:35056899
Comprehensive Analysis of Co-Mutations Identifies Cooperating Mechanisms of Tumorigenesis. PMID:35053577
Characterization of miRNAs in Embryonic, Larval, and Adult Lumpfish Provides a Reference miRNAome for Cyclopterus lumpus. PMID:35053128
Whole-Genome Transcript Expression Profiling Reveals Novel Insights into Transposon Genes and Non-Coding RNAs during Atlantic Salmon Seawater Adaptation. PMID:35052999
In silico identification of sugarcane (Saccharum officinarum L.) genome encoded microRNAs targeting sugarcane bacilliform virus. PMID:35051194
Construction of integrative transcriptome to boost systematic exploration of Bougainvillea. PMID:35042937
Sex differences in microRNA expression in first and third trimester human placenta†. PMID:35040930
Competing endogenous RNA network mediated by circ_3205 in SARS-CoV-2 infected cells. PMID:35039944
Differential expression profiles of microRNAs in musk gland of unmated and mated forest musk deer (Moschus berezovskii). PMID:35036174
Comparative genomic analysis of expansin superfamily gene members in zucchini and cucumber and their expression profiles under different abiotic stresses. PMID:35035133
Spectrum of microRNAs and their target genes in cancer: intervention in diagnosis and therapy. PMID:35031927
Degradome comparison between wild and cultivated rice identifies differential targeting by miRNAs. PMID:35031003
Preclinical development and phase 1 trial of a novel siRNA targeting lipoprotein(a). PMID:35027752
Intestinal Microbiota and Host Cooperate for Adaptation as a Hologenome. PMID:35014869
RAD gene family analysis in cotton provides some key genes for flowering and stress tolerance in upland cotton G. hirsutum. PMID:35012446
An in-silico approach to design potential siRNAs against the ORF57 of Kaposi's sarcoma-associated herpesvirus. PMID:35012290
Altered White Matter and microRNA Expression in a Murine Model Related to Williams Syndrome Suggests That miR-34b/c Affects Brain Development via Ptpru and Dcx Modulation. PMID:35011720
Weight Change Alters the Small RNA Profile of Urinary Extracellular Vesicles in Obesity. PMID:35008090
Orange Juice Attenuates Circulating miR-150-5p, miR-25-3p, and miR-451a in Healthy Smokers: A Randomized Crossover Study. PMID:35004810
Effect of Sperm Cryopreservation on miRNA Expression and Early Embryonic Development. PMID:35004670
SARS-CoV-2 causes a significant stress response mediated by small RNAs in the blood of COVID-19 patients. PMID:35003892
miRNA Combinatorics and its Role in Cell State Control-A Probabilistic Approach. PMID:34993232
Increased expression of six-large extracellular vesicle-derived miRNAs signature for nonvalvular atrial fibrillation. PMID:34980172
miRMut: Annotation of mutations in miRNA genes from human whole-exome or whole-genome sequencing. PMID:34977675
Rhinoceros Serum microRNAs: Identification, Characterization, and Evaluation of Potential Iron Overload Biomarkers. PMID:34977204
MicroRNA Cues from Nature: A Roadmap to Decipher and Combat Challenges in Human Health and Disease? PMID:34943882
Chromatin accessibility and microRNA expression in nephron progenitor cells during kidney development. PMID:34942352
BrCNGC gene family in field mustard: genome-wide identification, characterization, comparative synteny, evolution and expression profiling. PMID:34921218
Mammalian antiviral systems directed by small RNA. PMID:34914813
A comprehensive study to delineate the role of an extracellular vesicle-associated microRNA-29a in chronic methamphetamine use disorder. PMID:34913274
Biomarkers in the clinical management of patients with atrial fibrillation and heart failure. PMID:34908928
Identification of homologous human miRNAs as antivirals towards COVID-19 genome. PMID:34901760
GCAEMDA: Predicting miRNA-disease associations via graph convolutional autoencoder. PMID:34890410
Soybean miR159-GmMYB33 Regulatory Network Involved in Gibberellin-Modulated Resistance to Heterodera glycines. PMID:34884977
MYC dosage compensation is mediated by miRNA-transcription factor interactions in aneuploid cancer. PMID:34877484
MicroRNA-Related Strategies to Improve Cardiac Function in Heart Failure. PMID:34869689
Differential expression of Hsa-miR-517a/b in placental tissue may contribute to the pathogenesis of preeclampsia. PMID:34866368
miRTarBase update 2022: an informative resource for experimentally validated miRNA-target interactions. PMID:34850920
Epididymal mRNA and miRNA transcriptome analyses reveal important genes and miRNAs related to sperm motility in roosters. PMID:34844112
MYCN in Neuroblastoma: "Old Wine into New Wineskins". PMID:34842635
Comprehensive Analysis of microRNAs in Human Adult Erythropoiesis. PMID:34831239
miRGalaxy: Galaxy-Based Framework for Interactive Analysis of microRNA and isomiR Sequencing Data. PMID:34830818
Differential Circulating MicroRNA Expression in Age-Related Macular Degeneration. PMID:34830203
Effect of Cold Atmospheric Plasma on Epigenetic Changes, DNA Damage, and Possibilities for Its Use in Synergistic Cancer Therapy. PMID:34830132
Pattern of Repetitive Element Transcription Segregate Cell Lineages during the Embryogenesis of Sea Urchin Strongylocentrotus purpuratus. PMID:34829966
Identification and Characterization of Downy Mildew-Responsive microRNAs in Indian Vitis vinifera by High-Throughput Sequencing. PMID:34829189
MicroRNAs May Play an Important Role in Sexual Reversal Process of Chinese Soft-Shelled Turtle, Pelodiscus sinensis. PMID:34828302
MicroRNA-181a restricts human γδ T cell differentiation by targeting Map3k2 and Notch2. PMID:34821000
MicroRNA-222 Transferred From Semen Extracellular Vesicles Inhibits Sperm Apoptosis by Targeting BCL2L11. PMID:34820370
Genome-wide identification and expression analysis of sucrose nonfermenting-1-related protein kinase (SnRK) genes in Triticum aestivum in response to abiotic stress. PMID:34795369
Hypothalamic Transcriptome Analysis Reveals the Crucial MicroRNAs and mRNAs Affecting Litter Size in Goats. PMID:34790713
The genome variation and developmental transcriptome maps reveal genetic differentiation of skeletal muscle in pigs. PMID:34780471
MicroRNA Expression Profiling in Porcine Liver, Jejunum and Serum upon Dietary DON Exposure Reveals Candidate Toxicity Biomarkers. PMID:34769473
Circulating miRNAs as Potential Biomarkers Distinguishing Relapsing-Remitting from Secondary Progressive Multiple Sclerosis. A Review. PMID:34769314
The miRNome of Depression. PMID:34768740
Prediction methods for microRNA targets in bilaterian animals: Toward a better understanding by biologists. PMID:34765096
Computational screening of miRNAs and their targets in saffron (Crocus sativus L.) by transcriptome mining. PMID:34751821
MicroRNA profiling in bovine serum according to the stage of Mycobacterium avium subsp. paratuberculosis infection. PMID:34735546
Potential of sperm small non-coding RNAs as biomarkers of testicular toxicity in a doxorubicin-induced mouse model. PMID:34729424
RPS: a comprehensive database of RNAs involved in liquid-liquid phase separation. PMID:34718734
Identification and analysis of oil candidate genes reveals the molecular basis of cottonseed oil accumulation in Gossypium hirsutum L. PMID:34714356
Circulating miR-181 is a prognostic biomarker for amyotrophic lateral sclerosis. PMID:34711961
MicroSalmon: A Comprehensive, Searchable Resource of Predicted MicroRNA Targets and 3'UTR Cis-Regulatory Elements in the Full-Length Sequenced Atlantic Salmon Transcriptome. PMID:34698276
MicroRNAs in the Onset of Schizophrenia. PMID:34685659
Ligands as Stabilizers of G-Quadruplexes in Non-Coding RNAs. PMID:34684745
CELF Family Proteins in Cancer: Highlights on the RNA-Binding Protein/Noncoding RNA Regulatory Axis. PMID:34681716
Exogenous Application of Non-mature miRNA-Encoded miPEP164c Inhibits Proanthocyanidin Synthesis and Stimulates Anthocyanin Accumulation in Grape Berry Cells. PMID:34675946
The Streptochaeta Genome and the Evolution of the Grasses. PMID:34671369
Comparative expression analysis of tRF-3001a and tRF-1003 with corresponding miRNAs (miR-1260a and miR-4521) and their network analysis with breast cancer biomarkers. PMID:34661810
ILPMDA: Predicting miRNA-Disease Association Based on Improved Label Propagation. PMID:34659364
Non-coding RNA in raw and commercially processed milk and putative targets related to growth and immune-response. PMID:34657595
The changing microRNA landscape by color and cloudiness: a cautionary tale for nipple aspirate fluid biomarker analysis. PMID:34655415
A comparative analysis of differentially expressed mRNAs, miRNAs and circRNAs provides insights into the key genes involved in the high-altitude adaptation of yaks. PMID:34654374
SBSA: an online service for somatic binding sequence annotation. PMID:34606615
Identification and Elucidation of the Protective isomiRs in Lung Cancer Patient Prognosis. PMID:34589114
Screening by deep sequencing reveals mediators of microRNA tailing in C. elegans. PMID:34586415
Cerebrospinal Fluid MicroRNA Changes in Cognitively Normal Veterans With a History of Deployment-Associated Mild Traumatic Brain Injury. PMID:34580583
Cyclic Hypoxia Conditioning Alters the Content of Myoblast-Derived Extracellular Vesicles and Enhances Their Cell-Protective Functions. PMID:34572398
Differentially Regulated miRNAs and Their Related Molecular Pathways in Lichen Sclerosus. PMID:34571940
Identification of colorectal cancer associated biomarkers: an integrated analysis of miRNA expression. PMID:34547721
Identifying the dynamic gene regulatory network during latent HIV-1 reactivation using high-dimensional ordinary differential equations. PMID:34531927
MicroRNAs in Woody Plants. PMID:34531880
Genome-wide prediction of cauliflower miRNAs and lncRNAs and their roles in post-transcriptional gene regulation. PMID:34519918
Serum circulating miRNA-342-3p as a potential diagnostic biomarker in parathyroid carcinomas: A pilot study. PMID:34505413
The genome sequence provides insights into salt tolerance of Achnatherum splendens (Gramineae), a constructive species of alkaline grassland. PMID:34487631
DIANA-miTED: a microRNA tissue expression database. PMID:34469540
Functional microRNA targetome undergoes degeneration-induced shift in the retina. PMID:34465369
High-Throughput Sequencing-Based Identification of miRNAs and Their Target mRNAs in Wheat Variety Qing Mai 6 Under Salt Stress Condition. PMID:34456980
Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review. PMID:34439912
Computational Detection of MicroRNA Targets. PMID:34432280
Computational Detection of Pre-microRNAs. PMID:34432278
Long Noncoding RNAs in Neurodegenerative Diseases: Pathogenesis and Potential Implications as Clinical Biomarkers. PMID:34421536
HIV-1 Tat and cocaine impact astrocytic energy reservoir influence on miRNA epigenetic regulation. PMID:34418497
Finding differentially expressed sRNA-Seq regions with srnadiff. PMID:34415926
Large-scale transcriptome-wide profiling of microRNAs in human placenta and maternal plasma at early to mid gestation. PMID:34412547
The DUF221 domain-containing (DDP) genes identification and expression analysis in tomato under abiotic and phytohormone stress. PMID:34379048
Identification of differentially expressed microRNAs in primary esophageal achalasia by next-generation sequencing. PMID:34377051
Circular RNA Circ_0005564 promotes osteogenic differentiation of bone marrow mesenchymal cells in osteoporosis. PMID:34374320
The Cardamine enshiensis genome reveals whole genome duplication and insight into selenium hyperaccumulation and tolerance. PMID:34373445
Evaluation of RNA isolation methods for microRNA quantification in a range of clinical biofluids. PMID:34362351
Sorghum's Whole-Plant Transcriptome and Proteome Responses to Drought Stress: A Review. PMID:34357076
Small RNA expression and miRNA modification dynamics in human oocytes and early embryos. PMID:34340992
Regulating COX10-AS1 / miR-142-5p / PAICS axis inhibits the proliferation of non-small cell lung cancer. PMID:34323174
RNA editing affects cis-regulatory elements and predicts adverse cancer survival. PMID:34319007
Isolation and Analysis of MicroRNAs from Extracellular Vesicles of the Parasitic Model Nematodes Nippostrongylus brasiliensis and Trichuris muris. PMID:34313996
PIWI-interacting RNAs: Mitochondria-based biogenesis and functions in cancer. PMID:34291132
SCMFMDA: Predicting microRNA-disease associations based on similarity constrained matrix factorization. PMID:34252084
Identification of the Potential Gene Regulatory Networks and Therapeutics in Aged Mice With Postoperative Neurocognitive Disorder. PMID:34248489
High-throughput analysis of the interactions between viral proteins and host cell RNAs. PMID:34246161
Role of SNPs in the Biogenesis of Mature miRNAs. PMID:34239922
microRNA dynamic expression regulates invariant NKT cells. PMID:34236444
Integrative Analyses of Circulating Small RNAs and Kidney Graft Transcriptome in Transplant Glomerulopathy. PMID:34207555
Bioinformatics Accelerates the Major Tetrad: A Real Boost for the Pharmaceutical Industry. PMID:34201152
High miR-30 Expression Associates with Improved Breast Cancer Patient Survival and Treatment Outcome. PMID:34200751
Regulatory Potential of Competing Endogenous RNAs in Myotonic Dystrophies. PMID:34200099
In Silico and In Vitro Analyses Validate Human MicroRNAs Targeting the SARS-CoV-2 3'-UTR. PMID:34198800
Comparative analysis of dietary exosome-derived microRNAs from human, bovine and caprine colostrum and mature milk. PMID:34189507
Placental extracellular vesicles-associated microRNA-519c mediates endotoxin adaptation in pregnancy. PMID:34181894
MicroRNA-124-3p Plays a Crucial Role in Cleft Palate Induced by Retinoic Acid. PMID:34178974
microRNAs in viral acute respiratory infections: immune regulation, biomarkers, therapy, and vaccines. PMID:34171007
Classification of Breast Cancer and Breast Neoplasm Scenarios Based on Machine Learning and Sequence Features from lncRNAs-miRNAs-Diseases Associations. PMID:34152557
Noncoding RNA therapeutics - challenges and potential solutions. PMID:34145432
A pig BodyMap transcriptome reveals diverse tissue physiologies and evolutionary dynamics of transcription. PMID:34140474
Omics-Based Identification of Shared and Gender Disparity Routes in Hras12V-Induced Hepatocarcinogenesis: An Important Role for Dlk1-Dio3 Genomic Imprinting Region. PMID:34135934
Genome-Wide Analysis of Coding and Non-coding RNA Reveals a Conserved miR164-NAC-mRNA Regulatory Pathway for Disease Defense in Populus. PMID:34122520
The biogenesis and biological function of PIWI-interacting RNA in cancer. PMID:34118972
Circulating microRNA profile in humans and mice with congenital GH deficiency. PMID:34118183
Circulating miRNA expression in asthmatics is age-related and associated with clinical asthma parameters, respiratory function and systemic inflammation. PMID:34112152
Identification of microRNAs and gene regulatory networks in cleft lip common in humans and mice. PMID:34104955
RNAdetector: a free user-friendly stand-alone and cloud-based system for RNA-Seq data analysis. PMID:34082707
Urinary Cell-Free miR-99a-5p as a Potential Biomarker for Estrus Detection in Buffalo. PMID:34079831
Oncogenic Landscape of Somatic Mutations Perturbing Pan-Cancer lncRNA-ceRNA Regulation. PMID:34079798
Physiological Fitness and the Pathophysiology of Chronic Lymphocytic Leukemia (CLL). PMID:34064804
Cholesterol metabolism is a potential therapeutic target in Duchenne muscular dystrophy. PMID:34037326
Comprehensive machine-learning-based analysis of microRNA-target interactions reveals variable transferability of interaction rules across species. PMID:34030625
High-throughput miRNA sequencing of the human placenta: expression throughout gestation. PMID:34030457
Multiple cellular compartments engagement in Nicotiana benthamiana-peanut stunt virus-satRNA interactions revealed by systems biology approach. PMID:34028582
Interplay between miRNAs and lncRNAs: Mode of action and biological roles in plant development and stress adaptation. PMID:34025943
The role of microRNA in cancer cachexia and muscle wasting: A review article. PMID:34012527
Increased hippocampal excitability in miR-324-null mice. PMID:34001919
Next-Generation Sequencing Identification and Characterization of MicroRNAs in Dwarfed Citrus Trees Infected With Citrus Dwarfing Viroid in High-Density Plantings. PMID:33995303
Genome-wide analysis of the serine carboxypeptidase-like protein family in Triticum aestivum reveals TaSCPL184-6D is involved in abiotic stress response. PMID:33992092
The RNA landscape of the human placenta in health and disease. PMID:33976128
Simultaneous learning of individual microRNA-gene interactions and regulatory comodules. PMID:33971820
Combined Analysis of RNA Sequence and Microarray Data Reveals a Competing Endogenous RNA Network as Novel Prognostic Markers in Malignant Pleural Mesothelioma. PMID:33968720
Dynamic miRNA changes during the process of epileptogenesis in an infantile and adult-onset model. PMID:33958654
Clinical Significance of miR-183-3p and miR-182-5p in NSCLC and Their Correlation. PMID:33953608
MicroRNAs in shaping the resolution phase of inflammation. PMID:33934990
Interbase-FRET binding assay for pre-microRNAs. PMID:33931703
Circulating microRNAs Related to Bone Metabolism in HIV-Associated Bone Loss. PMID:33924204
miRNA activity inferred from single cell mRNA expression. PMID:33911110
Plasma-derived exosomal miR-4732-5p is a promising noninvasive diagnostic biomarker for epithelial ovarian cancer. PMID:33910598
Large-Scale Annotation and Evolution Analysis of MiRNA in Insects. PMID:33905491
Extracellular Vesicles from Human Adipose-Derived Mesenchymal Stem Cells: A Review of Common Cargos. PMID:33904115
MicroRNA Signatures of the Developing Primate Fovea. PMID:33898453
MicroRNA Expression Differences in Blood-Derived CD19+ B Cells of Methotrexate Treated Rheumatoid Arthritis Patients. PMID:33897713
Single nucleotide polymorphisms affect miRNA target prediction in bovine. PMID:33882076
Small RNA sequencing reveals distinct nuclear microRNAs in pig granulosa cells during ovarian follicle growth. PMID:33879202
Evolution after Whole-Genome Duplication: Teleost MicroRNAs. PMID:33871629
miR-7b-3p Exerts a Dual Role After Spinal Cord Injury, by Supporting Plasticity and Neuroprotection at Cortical Level. PMID:33869277
Quantitative mapping of the cellular small RNA landscape with AQRNA-seq. PMID:33859402
Computational prediction of potential siRNA and human miRNA sequences to silence orf1ab associated genes for future therapeutics against SARS-CoV-2. PMID:33846694
Integrated miRNA-Seq and mRNA-Seq Study to Identify miRNAs Associated With Alzheimer's Disease Using Post-mortem Brain Tissue Samples. PMID:33833661
Molecular mechanisms detected in yak lung tissue via transcriptome-wide analysis provide insights into adaptation to high altitudes. PMID:33833362
Systemic CLIP-seq analysis and game theory approach to model microRNA mode of binding. PMID:33823551
MicroRNA biomarkers of type 2 diabetes: A protocol for corroborating evidence by computational genomics and meta-analyses. PMID:33822793
PANDORA-seq expands the repertoire of regulatory small RNAs by overcoming RNA modifications. PMID:33820973
Computational methods for the ab initio identification of novel microRNA in plants: a systematic review. PMID:33816886
Successful Use of Heterologous CMV-Reactive T Lymphocyte to Treat Severe Refractory Cytomegalovirus (CMV) Infection in a Liver Transplanted Patient: Correlation of the Host Antiviral Immune Reconstitution with CMV Viral Load and CMV miRNome. PMID:33810329
Breast Cancer and the Other Non-Coding RNAs. PMID:33807045
Differential Response of Grapevine to Infection with 'Candidatus Phytoplasma solani' in Early and Late Growing Season through Complex Regulation of mRNA and Small RNA Transcriptomes. PMID:33805429
miRCOVID-19: Potential Targets of Human miRNAs in SARS-CoV-2 for RNA-Based Drug Discovery. PMID:33801496
Muscle allele-specific expression QTLs may affect meat quality traits in Bos indicus. PMID:33795794
Reproductive phasiRNA loci and DICER-LIKE5, but not microRNA loci, diversified in monocotyledonous plants. PMID:33793935
AASRA: an anchor alignment-based small RNA annotation pipeline†. PMID:33787835
Urine-derived extracellular vesicle miRNAs as possible biomarkers for and mediators of necrotizing enterocolitis: A proof of concept study. PMID:33785202
Identification of virulence associated milRNAs and their bidirectional targets in Rhizoctonia solani and maize during infection. PMID:33771101
Expression characteristics of pineal miRNAs at ovine different reproductive stages and the identification of miRNAs targeting the AANAT gene. PMID:33765915
Triple negative aggressive phenotype controlled by miR-135b and miR-365: new theranostics candidates. PMID:33753785
Human Cytomegalovirus miR-US33as-5p Targets IFNAR1 to Achieve Immune Evasion During Both Lytic and Latent Infection. PMID:33746965
Identification of New miRNA-mRNA Networks in the Development of Non-syndromic Cleft Lip With or Without Cleft Palate. PMID:33732700
Biological relevance and therapeutic potential of G-quadruplex structures in the human noncoding transcriptome. PMID:33721024
Longitudinal profiling of circulating miRNA during cardiac allograft rejection: a proof-of-concept study. PMID:33713567
miR-21: a non-specific biomarker of all maladies. PMID:33712063
Circulating microRNA Expression in Cushing's Syndrome. PMID:33692756
Epigenetic regulation of cellular functions in wound healing. PMID:33690920
The prohibitins (PHB) gene family in tomato: Bioinformatic identification and expression analysis under abiotic and phytohormone stresses. PMID:33678114
piRNAs as Modulators of Disease Pathogenesis. PMID:33673453
Arginine Alters miRNA Expression Involved in Development and Proliferation of Rat Mammary Tissue. PMID:33669500
The Implications of ncRNAs in the Development of Human Diseases. PMID:33668203
Epigenetic Markers Associated with Schistosomiasis. PMID:33664616
Abiotic Stress-Responsive miRNA and Transcription Factor-Mediated Gene Regulatory Network in Oryza sativa: Construction and Structural Measure Study. PMID:33643383
MicroRNA Mimics or Inhibitors as Antiviral Therapeutic Approaches Against COVID-19. PMID:33638807
MiR-378a-3p as a putative biomarker for hepatocellular carcinoma diagnosis and prognosis: Computational screening with experimental validation. PMID:33634974
Uniform genomic data analysis in the NCI Genomic Data Commons. PMID:33619257
Identification of Primary and Metastatic Lung Cancer-Related lncRNAs and Potential Targeted Drugs Based on ceRNA Network. PMID:33614509
Elucidation of the MicroRNA Transcriptome in Western Corn Rootworm Reveals Its Dynamic and Evolutionary Complexity. PMID:33607298
Altered non-coding RNA expression profile in F1 progeny 1 year after parental irradiation is linked to adverse effects in zebrafish. PMID:33602989
Identification of MicroRNA-Potassium Channel Messenger RNA Interactions in the Brain of Rats With Post-traumatic Epilepsy. PMID:33597846
miRNAs as biomarkers for early cancer detection and their application in the development of new diagnostic tools. PMID:33593374
TREM2 sustains macrophage-hepatocyte metabolic coordination in nonalcoholic fatty liver disease and sepsis. PMID:33586673
Profiling of MicroRNAs and Their Targets in Roots and Shoots Reveals a Potential MiRNA-Mediated Interaction Network in Response to Phosphate Deficiency in the Forestry Tree Betula luminifera. PMID:33584823
Extensive Analysis of miRNA Trimming and Tailing Indicates that AGO1 Has a Complex Role in miRNA Turnover. PMID:33573197
MEF2C shapes the microtranscriptome during differentiation of skeletal muscles. PMID:33568691
A Transcription Regulatory Sequence in the 5' Untranslated Region of SARS-CoV-2 Is Vital for Virus Replication with an Altered Evolutionary Pattern against Human Inhibitory MicroRNAs. PMID:33557205
A narrative review of the roles of the miR-15/107 family in heart disease: lessons and prospects for heart disease. PMID:33553359
tRNA-derived fragments tRFGlnCTG induced by arterial injury promote vascular smooth muscle cell proliferation. PMID:33552681
Investigating differential miRNA expression profiling using serum and urine specimens for detecting potential biomarkers for early prostate cancer diagnosis. PMID:33550766
Micro-RNA networks in T-cell prolymphocytic leukemia reflect T-cell activation and shape DNA damage response and survival pathways. PMID:33543866
Development and use of miRNA-derived SSR markers for the study of genetic diversity, population structure, and characterization of genotypes for breeding heat tolerant wheat varieties. PMID:33539339
Identification of microRNAs and their gene targets in cytoplasmic male sterile and fertile maintainer lines of pigeonpea. PMID:33538916
Genome-wide miRNA expression profiling in potato (Solanum tuberosum L.) reveals TOR-dependent post-transcriptional gene regulatory networks in diverse metabolic pathway. PMID:33520467
miRNAs in Microglia: Important Players in Multiple Sclerosis Pathology. PMID:33517686
IsoMiRmap-fast, deterministic, and exhaustive mining of isomiRs from short RNA-seq datasets. PMID:33471076
Horseshoe crab genomes reveal the evolution of genes and microRNAs after three rounds of whole genome duplication. PMID:33469163
Deciphering the miRNA transcriptome of breast muscle from the embryonic to post-hatching periods in chickens. PMID:33468053
Integrated miRNA-mRNA analysis reveals the roles of miRNAs in the replanting benefit of Achyranthes bidentata roots. PMID:33452468
Multi-Omics Approach Reveals miR-SNPs Affecting Muscle Fatty Acids Profile in Nelore Cattle. PMID:33419037
A pan-cancer atlas of somatic mutations in miRNA biogenesis genes. PMID:33406242
Circulating MicroRNAs in Relation to Esophageal Adenocarcinoma Diagnosis and Survival. PMID:33403483
Epigenetics of Aging and Aging-Associated Diseases. PMID:33401659
isomiRs-Hidden Soldiers in the miRNA Regulatory Army, and How to Find Them? PMID:33396892
Identification of microRNA-Associated-ceRNA Networks Regulating Crop Milk Production in Pigeon (Columba livia). PMID:33396684
Network- and systems-based re-engineering of dendritic cells with non-coding RNAs for cancer immunotherapy. PMID:33391542
Plant miR171 modulates mTOR pathway in HEK293 cells by targeting GNA12. PMID:33386590
Post-transcriptional tuning of FGF signaling mediates neural crest induction. PMID:33376218
A chromosome-level reference genome of non-heading Chinese cabbage [Brassica campestris (syn. Brassica rapa) ssp. chinensis]. PMID:33372175
Identification and Analysis of MicroRNAs Associated with Wing Polyphenism in the Brown Planthopper, Nilaparvata lugens. PMID:33371331
Premature MicroRNA-Based Therapeutic: A "One-Two Punch" against Cancers. PMID:33353171
Germline Genetic Association between Stromal Interaction Molecule 1 (STIM1) and Clinical Outcomes in Breast Cancer Patients. PMID:33348924
Integrator is recruited to promoter-proximally paused RNA Pol II to generate Caenorhabditis elegans piRNA precursors. PMID:33340372
Tribbles-1 Expression and Its Function to Control Inflammatory Cytokines, Including Interleukin-8 Levels are Regulated by miRNAs in Macrophages and Prostate Cancer Cells. PMID:33329538
Multiomics analyses unveil the involvement of microRNAs in pear fruit senescence under high- or low-temperature conditions. PMID:33328454
Expression of Circulating MicroRNAs Linked to Bone Metabolism in Chronic Kidney Disease-Mineral and Bone Disorder. PMID:33322822
Hormonal regulation of microRNA expression dynamics in the gut of the yellow fever mosquito Aedes aegypti. PMID:33317406
ncDRMarker: a computational method for identifying non-coding RNA signatures of drug resistance based on heterogeneous network. PMID:33313140
Run or Die in the Evolution of New MicroRNAs-Testing the Red Queen Hypothesis on De Novo New Genes. PMID:33306129
MiR-CLIP reveals iso-miR selective regulation in the miR-124 targetome. PMID:33300035
Computational insights into RNAi-based therapeutics for foot and mouth disease of Bos taurus. PMID:33299096
MicroRNA expression data of pluripotent and somatic cells and identification of cell type-specific MicroRNAs in pigs. PMID:33294536
RNA structure-wide discovery of functional interactions with multiplexed RNA motif library. PMID:33293523
MSI1 Promotes the Expression of the GBM Stem Cell Marker CD44 by Impairing miRNA-Dependent Degradation. PMID:33291443
Expression Pattern of Seminal Plasma Extracellular Vesicle Small RNAs in Boar Semen. PMID:33263017
Perspectives on MicroRNA Study in Oncogenesis: Where Are We? PMID:33260033
Intratumoral immunosuppression profiles in 11q-deleted neuroblastomas provide new potential therapeutic targets. PMID:33252831
Serum RNA Profiling in the 10-Years Period Prior to Diagnosis of Testicular Germ Cell Tumor. PMID:33251139
Genome-Wide Identification of Circular RNAs in Response to Low-Temperature Stress in Tomato Leaves. PMID:33250924
Underpinning miRNA-miRNA co-functional interaction patterns in the metabolism of Oryza sativa by genome-scale network analysis. PMID:33241156
HumiR: Web Services, Tools and Databases for Exploring Human microRNA Data. PMID:33233537
Turnip mosaic virus in oilseed rape activates networks of sRNA-mediated interactions between viral and host genomes. PMID:33230160
Molecular consequences of fetal alcohol exposure on amniotic exosomal miRNAs with functional implications for stem cell potency and differentiation. PMID:33196678
Integrative Network Analysis of Predicted miRNA-Targets Regulating Expression of Immune Response Genes in Bovine Coronavirus Infection. PMID:33193717
Comprehensive Identification and Expression Profiling of Circular RNAs During Nodule Development in Phaseolus vulgaris. PMID:33193538
Effects of purposeful soccer heading on circulating small extracellular vesicle concentration and cargo. PMID:33189894
The Physiological MicroRNA Landscape in Nipple Aspirate Fluid: Differences and Similarities with Breast Tissue, Breast Milk, Plasma and Serum. PMID:33187146
A ubiquitin ligase mediates target-directed microRNA decay independently of tailing and trimming. PMID:33184234
Transcriptional and post-transcriptional regulation of the pregnane X receptor: a rationale for interindividual variability in drug metabolism. PMID:33164107
MicroRNAs of the miR-17~9 family maintain adipose tissue macrophage homeostasis by sustaining IL-10 expression. PMID:33150865
A potential endogenous gibberellin-mediated signaling cascade regulated floral transition in Magnolia × soulangeana 'Changchun'. PMID:33146745
Elucidation of molecular links between obesity and cancer through microRNA regulation. PMID:33121472
Identification of citrus immune regulators involved in defence against Huanglongbing using a new functional screening system. PMID:33108698
Transcriptome and miRNome Analysis Provide New Insight Into Host Lipid Accumulation, Innate Immunity, and Viral Persistence in Hepatitis C Virus Infection in vitro. PMID:33101221
Genome streamlining in a minute herbivore that manipulates its host plant. PMID:33095158
SMDB: pivotal somatic sequence alterations reprogramming regulatory cascades. PMID:33094288
Importance of microRNAs in Skin Oncogenesis and Their Suitability as Agents and Targets for Topical Therapy. PMID:33080592
Genome of the four-finger threadfin Eleutheronema tetradactylum (Perciforms: Polynemidae). PMID:33076831
Progesterone Receptor Signaling Selectively Modulates Cytokine-Induced Global Gene Expression in Human Cervical Stromal Cells. PMID:33061933
The emerging roles of non-coding competing endogenous RNA in hepatocellular carcinoma. PMID:33061848
Repeated sampling facilitates within- and between-subject modeling of the human sperm transcriptome to identify dynamic and stress-responsive sncRNAs. PMID:33060642
Integrative transcriptomic analysis for linking acute stress responses to squamous cell carcinoma development. PMID:33057049
MCCMF: collaborative matrix factorization based on matrix completion for predicting miRNA-disease associations. PMID:33054708
Computational Identification and Comparative Analysis of Conserved miRNAs and Their Putative Target Genes in the Juglans regia and J. microcarpa Genomes. PMID:33050178
Micro RNA Targets in HIV Latency: Insights into Novel Layers of Latency Control. PMID:33045840
Epilepsy miRNA Profile Depends on the Age of Onset in Humans and Rats. PMID:33041753
ERH facilitates microRNA maturation through the interaction with the N-terminus of DGCR8. PMID:33035348
Predictive models for stage and risk classification in head and neck squamous cell carcinoma (HNSCC). PMID:33024622
A new approach for COVID-19 treatment by micro-RNA. PMID:33017912
A meta-analysis of microRNAs expressed in human aerodigestive epithelial cultures and their role as potential biomarkers of exposure response to nicotine-containing products. PMID:33014713
iMDA-BN: Identification of miRNA-disease associations based on the biological network and graph embedding algorithm. PMID:33005302
Genome-wide identification and characterization of ABA receptor PYL gene family in rice. PMID:32998689
Millipede genomes reveal unique adaptations during myriapod evolution. PMID:32991578
Network-based analysis implies critical roles of microRNAs in the long-term cellular responses to gold nanoparticles. PMID:32990715
A mouse tissue atlas of small noncoding RNA. PMID:32978296
Heterogeneous Graph Convolutional Networks and Matrix Completion for miRNA-Disease Association Prediction. PMID:32974293
TSPAN1 promotes autophagy flux and mediates cooperation between WNT-CTNNB1 signaling and autophagy via the MIR454-FAM83A-TSPAN1 axis in pancreatic cancer. PMID:32972302
A panel of 8 miRNAs as a novel diagnostic biomarker in pancreatic cancer. PMID:32957376
Sepsis Diagnostics: Intensive Care Scoring Systems Superior to MicroRNA Biomarker Testing. PMID:32948040
Endogenous activated small interfering RNAs in virus-infected Brassicaceae crops show a common host gene-silencing pattern affecting photosynthesis and stress response. PMID:32945560
Stumbling on elusive cargo: how isomiRs challenge microRNA detection and quantification, the case of extracellular vesicles. PMID:32944171
RNA Drugs and RNA Targets for Small Molecules: Principles, Progress, and Challenges. PMID:32929000
High-resolution analysis of differential gene expression during skeletal muscle atrophy and programmed cell death. PMID:32926651
Premeiotic, 24-Nucleotide Reproductive PhasiRNAs Are Abundant in Anthers of Wheat and Barley But Not Rice and Maize. PMID:32917771
Identification of Biomarkers to Construct a Competing Endogenous RNA Network and Establishment of a Genomic-Clinicopathologic Nomogram to Predict Survival for Children with Rhabdoid Tumors of the Kidney. PMID:32908900
Non-Coding RNA Databases in Cardiovascular Research. PMID:32887511
Pooled analysis of radiation hybrids identifies loci for growth and drug action in mammalian cells. PMID:32878976
Jasmonate induced alternative splicing responses in Arabidopsis. PMID:32875268
Music-listening regulates human microRNA expression. PMID:32867562
miR-205: A Potential Biomedicine for Cancer Therapy. PMID:32854238
Comparative microRNA Transcriptomes in Domestic Goats Reveal Acclimatization to High Altitude. PMID:32849809
Differential Regulation of miRNA Profiles of Human Cells Experimentally Infected by Leishmania donovani Isolated From Indian Visceral Leishmaniasis and Post-Kala-Azar Dermal Leishmaniasis. PMID:32849363
Gonad-Specific Transcriptomes Reveal Differential Expression of Gene and miRNA Between Male and Female of the Discus Fish (Symphysodon aequifasciatus). PMID:32848810
The microRNA target site landscape is a novel molecular feature associating alternative polyadenylation with immune evasion activity in breast cancer. PMID:32844230
Predicted therapeutic targets for COVID-19 disease by inhibiting SARS-CoV-2 and its related receptors. PMID:32835083
Robust partitioning of microRNA targets from downstream regulatory changes. PMID:32821933
Whole transcriptome analysis on blue light-induced eye damage. PMID:32821674
Identification and characterization of miRNAs during early pregnancy in domestic sheep. PMID:32794198
Characterization of B-Genome Specific High Copy hAT MITE Families in Brassica nigra Genome. PMID:32793262
Mycoplasma hyopneumoniae J elicits an antioxidant response and decreases the expression of ciliary genes in infected swine epithelial cells. PMID:32792522
MicroRNA-222 Regulates Melanoma Plasticity. PMID:32784455
MicroRNA Profiling in Paired Left and Right Eyes, Lungs, and Testes of Normal Mice. PMID:32769059
Predictive features of gene expression variation reveal mechanistic link with differential expression. PMID:32767663
Altered miRNAs Expression Correlates With Gastroenteropancreatic Neuroendocrine Tumors Grades. PMID:32766159
Gga-miR-3525 Targets PDLIM3 through the MAPK Signaling Pathway to Regulate the Proliferation and Differentiation of Skeletal Muscle Satellite Cells. PMID:32759823
SARS-CoV-2 may regulate cellular responses through depletion of specific host miRNAs. PMID:32755307
Insight in miRNome of Long-Term Non-Progressors and Elite Controllers Exposes Potential RNAi Role in Restraining HIV-1 Infection. PMID:32751854
Small Things Matter: Relevance of MicroRNAs in Cardiovascular Disease. PMID:32733281
Population variation in miRNAs and isomiRs and their impact on human immunity to infection. PMID:32731901
MicroRNAs and Apoptosis in Colorectal Cancer. PMID:32731413
Analysis of conserved miRNAs in cynomolgus macaque genome using small RNA sequencing and homology searching. PMID:32728489
Genome-wide characterization of the C2H2 zinc-finger genes in Cucumis sativus and functional analyses of four CsZFPs in response to stresses. PMID:32727369
Circulating miR-16-5p, miR-92a-3p, and miR-451a in Plasma from Lung Cancer Patients: Potential Application in Early Detection and a Regulatory Role in Tumorigenesis Pathways. PMID:32726984
A Transposon Story: From TE Content to TE Dynamic Invasion of Drosophila Genomes Using the Single-Molecule Sequencing Technology from Oxford Nanopore. PMID:32722451
Comparative transcriptomics of primary cells in vertebrates. PMID:32718981
miRTil: An Extensive Repository for Nile Tilapia microRNA Next Generation Sequencing Data. PMID:32707870
Cell type-specific novel long non-coding RNA and circular RNA in the BLUEPRINT hematopoietic transcriptomes atlas. PMID:32703790
Calmodulin-binding transcription activator (CAMTA) genes family: Genome-wide survey and phylogenetic analysis in flax (Linum usitatissimum). PMID:32702710
The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest. PMID:32698880
Post-transcriptional regulation of MRTF-A by miRNAs during myogenic differentiation of myoblasts. PMID:32692361
Analysis of Transcriptome and miRNAome in the Muscle of Bamei Pigs at Different Developmental Stages. PMID:32679676
Degradome, small RNAs and transcriptome sequencing of a high-nicotine cultivated tobacco uncovers miRNA's function in nicotine biosynthesis. PMID:32678207
Transcriptome Characterization of Repressed Embryonic Myogenesis Due to Maternal Calorie Restriction. PMID:32671071
Dissecting the Functional Mechanisms of Somatic Copy-Number Alterations Based on Dysregulated ceRNA Networks across Cancers. PMID:32668393
Transcriptomic Analysis of Extracellular RNA Governed by the Endocytic Adaptor Protein Cin1 of Cryptococcus deneoformans. PMID:32656093
Silencing miR-370-3p rescues funny current and sinus node function in heart failure. PMID:32647133
Exosomal MicroRNAs and Organotropism in Breast Cancer Metastasis. PMID:32646059
Genome-wide identification of microRNAs involved in the regulation of fruit ripening and climacteric stages in melon (Cucumis melo). PMID:32637134
Comparison of methods and characterization of small RNAs from plasma extracellular vesicles of HIV/HCV coinfected patients. PMID:32636456
MMiRNA-Viewer2, a bioinformatics tool for visualizing functional annotation for MiRNA and MRNA pairs in a network. PMID:32631332
Update on current views and advances on RSV infection (Review). PMID:32626981
miR-15/107 microRNA Gene Group: Characteristics and Functional Implications in Cancer. PMID:32626702
Flaming the fight against cancer cells: the role of microRNA-93. PMID:32612456
Expression of activating transcription factor 5 (ATF5) is mediated by microRNA-520b-3p under diverse cellular stress in cancer cells. PMID:32603335
Genome-wide identification and comparison of differentially expressed profiles of miRNAs and lncRNAs with associated ceRNA networks in the gonads of Chinese soft-shelled turtle, Pelodiscus sinensis. PMID:32600250
Clinical Potentials of miR-576-3p, miR-613, NDRG2 and YKL40 in Colorectal Cancer Patients. PMID:32592365
Pervasive Selection against MicroRNA Target Sites in Human Populations. PMID:32585012
Analysis of MicroRNA-18a Expression in Multiple Sclerosis Patients. PMID:32582802
MiR-148a-3p Regulates Skeletal Muscle Satellite Cell Differentiation and Apoptosis via the PI3K/AKT Signaling Pathway by Targeting Meox2. PMID:32582277
Applications of Machine Learning in miRNA Discovery and Target Prediction. PMID:32581642
Rice GROWTH-REGULATING FACTOR7 Modulates Plant Architecture through Regulating GA and Indole-3-Acetic Acid Metabolism. PMID:32581114
Composition of Caenorhabditis elegans extracellular vesicles suggests roles in metabolism, immunity, and aging. PMID:32578074
Regulation of breast cancer metastasis signaling by miRNAs. PMID:32577859
An miRNA fingerprint using neural-enriched extracellular vesicles from blood plasma: towards a biomarker for amyotrophic lateral sclerosis/motor neuron disease. PMID:32574550
Targeting the coding sequence: opposing roles in regulating classical and non-classical MHC class I molecules by miR-16 and miR-744. PMID:32571994
PlantMirP-Rice: An Efficient Program for Rice Pre-miRNA Prediction. PMID:32570706
MicroRNAs signatures, bioinformatics analysis of miRNAs, miRNA mimics and antagonists, and miRNA therapeutics in osteosarcoma. PMID:32565738
Jellyfish genomes reveal distinct homeobox gene clusters and conservation of small RNA processing. PMID:32561724
Profiling cytotoxic microRNAs in pediatric and adult glioblastoma cells by high-content screening, identification, and validation of miR-1300. PMID:32555332
A Novel miRNA-hlo-miR-2-Serves as a Regulatory Factor That Controls Molting Events by Targeting CPR1 in Haemaphysalis longicornis Nymphs. PMID:32547523
Transcriptional repression of Myc underlies the tumour suppressor function of AGO1 in Drosophila. PMID:32527935
Deep belief network-Based Matrix Factorization Model for MicroRNA-Disease Associations Prediction. PMID:32523330
A novel microRNA boosts hyper-β-oxidation of fatty acids in liver by impeding CEP350-mediated sequestration of PPARα and thus restricts chronic hepatitis C. PMID:32507013
The Long-Term Effects of Early Life Stress on the Modulation of miR-19 Levels. PMID:32499725
miR-379 links glucocorticoid treatment with mitochondrial response in Duchenne muscular dystrophy. PMID:32499563
Developmental alterations in the transcriptome of three distinct rodent models of schizophrenia. PMID:32497066
Endogenous miR-204 Protects the Kidney against Chronic Injury in Hypertension and Diabetes. PMID:32487559
PIWIL3 Forms a Complex with TDRKH in Mammalian Oocytes. PMID:32486081
Role of microRNA 690 in Mediating Angiotensin II Effects on Inflammation and Endoplasmic Reticulum Stress. PMID:32466437
MicroRNA-934 is a novel primate-specific small non-coding RNA with neurogenic function during early development. PMID:32459171
Regulation of hepatic microRNAs in response to early stage Echinococcus multilocularis egg infection in C57BL/6 mice. PMID:32442168
miRactDB characterizes miRNA-gene relation switch between normal and cancer tissues across pan-cancer. PMID:32436932
The Profiling and Role of miRNAs in Diabetes Mellitus. PMID:32432227
Clues of in vivo nuclear gene regulation by mitochondrial short non-coding RNAs. PMID:32427953
MSFSP: A Novel miRNA-Disease Association Prediction Model by Federating Multiple-Similarities Fusion and Space Projection. PMID:32425980
tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing. PMID:32423416
Role of MicroRNAs in Host Defense against Infectious Bursal Disease Virus (IBDV) Infection: A Hidden Front Line. PMID:32423052
MicroRNA regulation postbleomycin due to the R213G extracellular superoxide dismutase variant is predicted to suppress inflammatory and immune pathways. PMID:32421439
CITED4 Protects Against Adverse Remodeling in Response to Physiological and Pathological Stress. PMID:32418505
Landscape of the Noncoding Transcriptome Response of Two Arabidopsis Ecotypes to Phosphate Starvation. PMID:32404413
High-Throughput Identification of MiR-145 Targets in Human Articular Chondrocytes. PMID:32403239
Systematic Identification and Analysis of Light-Responsive Circular RNA and Co-expression Networks in Lettuce (Lactuca sativa). PMID:32398233
Identification and Integrated Analysis of MicroRNA and mRNA Expression Profiles During Agonistic Behavior in Chinese Mitten Crab (Eriocheir sinensis) Using a Deep Sequencing Approach. PMID:32391050
Bioinformatics Resources for Plant Abiotic Stress Responses: State of the Art and Opportunities in the Fast Evolving -Omics Era. PMID:32384671
Integrated analysis of genome-wide miRNAs and targeted gene expression in esophageal squamous cell carcinoma (ESCC) and relation to prognosis. PMID:32375686
Prediction of miRNA targets by learning from interaction sequences. PMID:32369518
Bayesian network analysis of plasma microRNA sequencing data in patients with venous thrombosis. PMID:32368197
Machine Learning Analysis of Blood microRNA Data in Major Depression: A Case-Control Study for Biomarker Discovery. PMID:32365192
Polymorphisms in miRNA binding sites involved in metabolic diseases in mice and humans. PMID:32350386
Circulating microRNA profiles based on direct S-Poly(T)Plus assay for detection of coronary heart disease. PMID:32343493
CFSP: a collaborative frequent sequence pattern discovery algorithm for nucleic acid sequence classification. PMID:32341900
RNA-Targeted Therapies and High-Throughput Screening Methods. PMID:32340368
Meta-Analysis of the Potential Role of miRNA-21 in Cardiovascular System Function Monitoring. PMID:32337248
Molecular Mechanisms, Diagnostic Aspects and Therapeutic Opportunities of Micro Ribonucleic Acids in Atrial Fibrillation. PMID:32326592
Upregulation of miR-101 during Influenza A Virus Infection Abrogates Viral Life Cycle by Targeting mTOR Pathway. PMID:32326380
METTL14 promotes the migration and invasion of breast cancer cells by modulating N6‑methyladenosine and hsa‑miR‑146a‑5p expression. PMID:32323801
miR-140-3p Inhibits Cutaneous Melanoma Progression by Disrupting AKT/p70S6K and JNK Pathways through ABHD2. PMID:32322665
The functions of ocu-miR-205 in regulating hair follicle development in Rex rabbits. PMID:32321445
The miR‑625‑3p/AXL axis induces non‑T790M acquired resistance to EGFR‑TKI via activation of the TGF‑β/Smad pathway and EMT in EGFR‑mutant non‑small cell lung cancer. PMID:32319651
The insufficiency of circulating miRNA and DNA as diagnostic tools or as biomarkers of treatment efficacy for Onchocerca volvulus. PMID:32317658
Genome-Wide Identification and Characterization of Drought Stress Responsive microRNAs in Tibetan Wild Barley. PMID:32316632
3D Cell Culture-Based Global miRNA Expression Analysis Reveals miR-142-5p as a Theranostic Biomarker of Rectal Cancer Following Neoadjuvant Long-Course Treatment. PMID:32316138
Genomic Clustering Facilitates Nuclear Processing of Suboptimal Pri-miRNA Loci. PMID:32302542
CREB1 is affected by the microRNAs miR-22-3p, miR-26a-5p, miR-27a-3p, and miR-221-3p and correlates with adverse clinicopathological features in renal cell carcinoma. PMID:32300145
The novel microRNAs hsa-miR-nov7 and hsa-miR-nov3 are over-expressed in locally advanced breast cancer. PMID:32298266
Uncovering the cellular capacity for intensive and specific feedback self-control of the argonautes and MicroRNA targeting activity. PMID:32297952
XPO5 promotes primary miRNA processing independently of RanGTP. PMID:32296071
microRNA profiling in the Weddell seal suggests novel regulatory mechanisms contributing to diving adaptation. PMID:32293246
Novel plant microRNAs from broccoletti sprouts do not show cross-kingdom regulation of pancreatic cancer. PMID:32292571
Circulating miRNome detection analysis reveals 537 miRNAS in plasma, 625 in extracellular vesicles and a discriminant plasma signature of 19 miRNAs in children with retinoblastoma from which 14 are also detected in corresponding primary tumors. PMID:32287312
Online Databases and Non-coding RNAs in Cardiovascular Diseases. PMID:32285405
Circulating MicroRNA Profiling in Non-ST Elevated Coronary Artery Syndrome Highlights Genomic Associations with Serial Platelet Reactivity Measurements. PMID:32277149
Knockout of glutathione peroxidase 5 down-regulates the piRNAs in the caput epididymidis of aged mice. PMID:32270769
miRNA target identification and prediction as a function of time in gene expression data. PMID:32249661
Transcriptomic and Functional Screens Reveal MicroRNAs That Modulate Prostate Cancer Metastasis. PMID:32231998
Radiation Exposure of Peripheral Mononuclear Blood Cells Alters the Composition and Function of Secreted Extracellular Vesicles. PMID:32230970
Data on occurrence of miRNA precursors in the Cucurbita maxima phloem sap. PMID:32226817
Predicting the presence of breast cancer using circulating small RNAs, including those in the extracellular vesicles. PMID:32215990
CLING: Candidate Cancer-Related lncRNA Prioritization via Integrating Multiple Biological Networks. PMID:32211391
A miRNA-based diagnostic model predicts resectable lung cancer in humans with high accuracy. PMID:32193503
Optimization of small RNA library preparation protocol from human urinary exosomes. PMID:32188466
PncStress: a manually curated database of experimentally validated stress-responsive non-coding RNAs in plants. PMID:32185394
PESM: predicting the essentiality of miRNAs based on gradient boosting machines and sequences. PMID:32183740
Integrated annotations and analyses of small RNA-producing loci from 47 diverse plants. PMID:32179590
Multi-Omics Analysis Reveals MicroRNAs Associated With Cardiometabolic Traits. PMID:32174972
Comprehensive transcriptome profiling of Taiwanese colorectal cancer implicates an ethnic basis for pathogenesis. PMID:32161294
Response of transgenic tobacco overexpressing the CchGLP gene to cadmium and aluminium: phenotypic and microRNAs expression changes. PMID:32158116
Serum microRNA in patients undergoing atrial fibrillation ablation. PMID:32157193
TAp63-Regulated miRNAs Suppress Cutaneous Squamous Cell Carcinoma through Inhibition of a Network of Cell-Cycle Genes. PMID:32156775
Dietary Depletion of Milk Exosomes and Their MicroRNA Cargos Elicits a Depletion of miR-200a-3p and Elevated Intestinal Inflammation and Chemokine (C-X-C Motif) Ligand 9 Expression in Mdr1a-/- Mice. PMID:32154493
Engineering salinity tolerance in plants: progress and prospects. PMID:32152761
Screening and identification of MicroRNAs expressed in perirenal adipose tissue during rabbit growth. PMID:32145738
Circulating RNAs as Potential Biomarkers in Amyotrophic Lateral Sclerosis. PMID:32138249
Allele-specific miRNA-binding analysis identifies candidate target genes for breast cancer risk. PMID:32128252
MicroRNA as novel biomarkers and therapeutic targets in diabetic kidney disease: An update. PMID:32123840
A de novo reference transcriptome for Bolitoglossa vallecula, an Andean mountain salamander in Colombia. PMID:32123704
Comparative Analysis of miRNA Expression Profiles Between Heat-Tolerant and Heat-Sensitive Genotypes of Flowering Chinese Cabbage Under Heat Stress Using High-Throughput Sequencing. PMID:32121287
Integrated Analysis of Large-Scale Omics Data Revealed Relationship Between Tissue Specificity and Evolutionary Dynamics of Small RNAs in Maize (Zea mays). PMID:32117460
Inhalation of lung spheroid cell secretome and exosomes promotes lung repair in pulmonary fibrosis. PMID:32111836
Postprandial transfer of colostral extracellular vesicles and their protein and miRNA cargo in neonatal calves. PMID:32109241
Comparison of Arachis monticola with Diploid and Cultivated Tetraploid Genomes Reveals Asymmetric Subgenome Evolution and Improvement of Peanut. PMID:32099754
Identification of putative biomarkers for Infantile Hemangiomas and Propranolol treatment via data integration. PMID:32094357
Chromatin accessibility is associated with the changed expression of miRNAs that target members of the Hippo pathway during myoblast differentiation. PMID:32094347
A Small RNA-Mediated Regulatory Network in Arabidopsis thaliana Demonstrates Connectivity Between phasiRNA Regulatory Modules and Extensive Co-Regulation of Transcription by miRNAs and phasiRNAs. PMID:32082334
Pan-cancer analysis reveals cooperativity of both strands of microRNA that regulate tumorigenesis and patient survival. PMID:32080184
Mutual Regulation of RNA Silencing and the IFN Response as an Antiviral Defense System in Mammalian Cells. PMID:32079277
Identification of novel microRNAs and their targets in Chlorophytum borivilianum by small RNA and degradome sequencing. PMID:32072082
OsmiR167a-targeted auxin response factors modulate tiller angle via fine-tuning auxin distribution in rice. PMID:32061119
Identification of the Regulatory Role of lncRNA SNHG16 in Myasthenia Gravis by Constructing a Competing Endogenous RNA Network. PMID:32059338
MicroRNAs regulate innate immunity against uropathogenic and commensal-like Escherichia coli infections in the surrogate insect model Galleria mellonella. PMID:32054914
Targeted silencing of miRNA-132-3p expression rescues disuse osteopenia by promoting mesenchymal stem cell osteogenic differentiation and osteogenesis in mice. PMID:32054528
Loss of p53 drives neuron reprogramming in head and neck cancer. PMID:32051587
miR-128a Acts as a Regulator in Cardiac Development by Modulating Differentiation of Cardiac Progenitor Cell Populations. PMID:32050579
miR159 Represses a Constitutive Pathogen Defense Response in Tobacco. PMID:32041907
Highly Sensitive Circulating MicroRNA Panel for Accurate Detection of Hepatocellular Carcinoma in Patients With Liver Disease. PMID:32025611
MicroRNA and Cardiovascular Diseases. PMID:32018347
Identification of drought-responsive miRNAs in Hippophae tibetana using high-throughput sequencing. PMID:32015949
Three paralogous clusters of the miR-17~92 family of microRNAs restrain IL-12-mediated immune defense. PMID:32015501
Evolutionary dynamics of microRNA target sites across vertebrate evolution. PMID:32012152
Altered Biogenesis and MicroRNA Content of Hippocampal Exosomes Following Experimental Status Epilepticus. PMID:32009885
miR-19a Is Involved In Progression And Malignancy Of Anaplastic Thyroid Cancer Cells. PMID:32009794
RATEmiRs: the rat atlas of tissue-specific and enriched miRNAs for discerning baseline expression exclusivity of candidate biomarkers. PMID:32009518
The 3'-untranslated region contributes to the pregnane X receptor (PXR) expression down-regulation by PXR ligands and up-regulation by glucocorticoids. PMID:31998607
Comprehensive analysis of the Gossypium hirsutum L. respiratory burst oxidase homolog (Ghrboh) gene family. PMID:31996127
Novel miRNA identification and comparative profiling of miRNA regulations revealed important pathways in Jinding duck ovaries by small RNA sequencing. PMID:31988832
The role of the redox/miR-6855-3p/PRDX5A axis in reversing SLUG-mediated BRCA2 silencing in breast cancer cells. PMID:31987042
Unique microRNA Signals in Plasma Exosomes from Pregnancies Complicated by Preeclampsia. PMID:31983308
A regulatory microRNA network controls endothelial cell phenotypic switch during sprouting angiogenesis. PMID:31976858
A novel computational approach to the silencing of Sugarcane Bacilliform Guadeloupe A Virus determines potential host-derived MicroRNAs in sugarcane (Saccharum officinarum L.). PMID:31976180
Small RNA Bidirectional Crosstalk During the Interaction Between Wheat and Zymoseptoria tritici. PMID:31969895
CRL4-Cereblon complex in Thalidomide Embryopathy: a translational investigation. PMID:31964914
SNP Diversity in CD14 Gene Promoter Suggests Adaptation Footprints in Trypanosome Tolerant N'Dama (Bos taurus) but not in Susceptible White Fulani (Bos indicus) Cattle. PMID:31963925
Intragenic MicroRNAs Autoregulate Their Host Genes in Both Direct and Indirect Ways-A Cross-Species Analysis. PMID:31963421
Manatee: detection and quantification of small non-coding RNAs from next-generation sequencing data. PMID:31959833
miRNAs as Influencers of Cell-Cell Communication in Tumor Microenvironment. PMID:31952362
miR-TV: an interactive microRNA Target Viewer for microRNA and target gene expression interrogation for human cancer studies. PMID:31950188
Transcriptional mechanisms of drug addiction . PMID:31949405
Phenotype-genotype network construction and characterization: a case study of cardiovascular diseases and associated non-coding RNAs. PMID:31942979
Transcriptome meta-analysis reveals differences of immune profile between eutopic endometrium from stage I-II and III-IV endometriosis independently of hormonal milieu. PMID:31941945
Enhanced genome assembly and a new official gene set for Tribolium castaneum. PMID:31937263
miRNA-34a suppresses colon carcinoma proliferation and induces cell apoptosis by targeting SYT1. PMID:31934125
Deep neural networks for human microRNA precursor detection. PMID:31931701
Role of miR-221/222 in Tumor Development and the Underlying Mechanism. PMID:31929798
Mesostigma viride Genome and Transcriptome Provide Insights into the Origin and Evolution of Streptophyta. PMID:31921561
Theranostic application of miR-429 in HER2+ breast cancer. PMID:31903105
Multi-level transcriptome sequencing identifies COL1A1 as a candidate marker in human heart failure progression. PMID:31902369
Characterization of Holstein and Normande whole milk miRNomes highlights breed specificities. PMID:31889100
Sensitive detection of EBV microRNAs across cancer spectrum reveals association with decreased survival in adult acute myelocytic leukemia. PMID:31889055
A network view of microRNA and gene interactions in different pathological stages of colon cancer. PMID:31888617
Robust profiling of microRNAs and isomiRs in human plasma exosomes across 46 individuals. PMID:31882820
Systems and Synthetic microRNA Biology: From Biogenesis to Disease Pathogenesis. PMID:31878193
miR-10a-5p and miR-29b-3p as Extracellular Vesicle-Associated Prostate Cancer Detection Markers. PMID:31877768
Genome-wide identification, phylogeny, and expression analysis of the SBP-box gene family in Euphorbiaceae. PMID:31874634
RCMF: a robust collaborative matrix factorization method to predict miRNA-disease associations. PMID:31874608
Identification of circulating microRNA signatures as potential biomarkers in the serum of elk infected with chronic wasting disease. PMID:31873177
The persimmon (Diospyros oleifera Cheng) genome provides new insights into the inheritance of astringency and ancestral evolution. PMID:31871686
Unraveling the Role of MicroRNAs in Mycobacterium tuberculosis Infection and Disease: Advances and Pitfalls. PMID:31871103
Expression alteration of microRNAs in Nucleus Accumbens is associated with chronic stress and antidepressant treatment in rats. PMID:31856805
LncRNA-miRNA interaction prediction through sequence-derived linear neighborhood propagation method with information combination. PMID:31856716
A 10-year prediagnostic follow-up study shows that serum RNA signals are highly dynamic in lung carcinogenesis. PMID:31851411
Identification of miRNA precursors in the phloem of Cucurbita maxima. PMID:31844599
miR-639 Expression Is Silenced by DNMT3A-Mediated Hypermethylation and Functions as a Tumor Suppressor in Liver Cancer Cells. PMID:31843451
Effective and Accurate Gene Silencing by a Recombinant AAV-Compatible MicroRNA Scaffold. PMID:31843447
miRNA142-3p targets Tet2 and impairs Treg differentiation and stability in models of type 1 diabetes. PMID:31836704
Identification of microRNAs in skeletal muscle associated with lung cancer cachexia. PMID:31828982
Circulating Serum MicroRNAs as Potential Diagnostic Biomarkers of Posttraumatic Stress Disorder: A Pilot Study. PMID:31824554
Association Between Side Effects and Blood microRNA Expression Levels and Their Targeted Pathways in Patients With Major Depressive Disorder Treated by a Selective Serotonin Reuptake Inhibitor, Escitalopram: A CAN-BIND-1 Report. PMID:31819986
Cancer-Derived Extracellular Vesicle-Associated MicroRNAs in Intercellular Communication: One Cell's Trash Is Another Cell's Treasure. PMID:31817101
microRNA-143-3p attenuated development of hepatic fibrosis in autoimmune hepatitis through regulation of TAK1 phosphorylation. PMID:31808606
Identification and characterization of differentially expressed exosomal microRNAs in bovine milk infected with Staphylococcus aureus. PMID:31805863
The molecular landscape of ETMR at diagnosis and relapse. PMID:31802000
Isolation of microglia-derived extracellular vesicles: towards miRNA signatures and neuroprotection. PMID:31801555
LGP2 virus sensor enhances apoptosis by upregulating apoptosis regulatory genes through TRBP-bound miRNAs during viral infection. PMID:31799626
An Integrated Model of Minor Intron Emergence and Conservation. PMID:31798628
The integrative knowledge base for miRNA-mRNA expression in colorectal cancer. PMID:31792281
A cell-based probabilistic approach unveils the concerted action of miRNAs. PMID:31790387
Potato Virus Y Infection Alters Small RNA Metabolism and Immune Response in Tomato. PMID:31783643
ODNA: a manually curated database of noncoding RNAs associated with orthopedics. PMID:31781773
Recent Progress on Circular RNA Research in Acute Myeloid Leukemia. PMID:31781482
miR-590-3p and Its Downstream Target Genes in HCC Cell Lines. PMID:31781476
Identification of potential molecular pathogenesis mechanisms modulated by microRNAs in patients with Intestinal Neuronal Dysplasia type B. PMID:31776429
Downregulation of exosomal miR-192-5p and miR-204-5p in subjects with nonclassic apparent mineralocorticoid excess. PMID:31775784
Comparative analysis of small RNAs released by the filarial nematode Litomosoides sigmodontis in vitro and in vivo. PMID:31770367
Dynamic architecture and regulatory implications of the miRNA network underlying the response to stress in melon. PMID:31766933
A network-based approach to uncover microRNA-mediated disease comorbidities and potential pathobiological implications. PMID:31754458
Evolution of small RNA expression following hybridization and allopolyploidization: insights from Spartina species (Poaceae, Chloridoideae). PMID:31748889
Upgrading the Repertoire of miRNAs in Gastric Adenocarcinoma to Provide a New Resource for Biomarker Discovery. PMID:31739401
Transcriptome analysis of miRNA and mRNA in the livers of pigs with highly diverged backfat thickness. PMID:31727987
Emerging roles of piRNAs in cancer: challenges and prospects. PMID:31727866
PlantCircNet: a database for plant circRNA-miRNA-mRNA regulatory networks. PMID:31725858
Genome-wide analysis of small RNAs from Odontoglossum ringspot virus and Cymbidium mosaic virus synergistically infecting Phalaenopsis. PMID:31724809
Integrative molecular analysis of metastatic hepatocellular carcinoma. PMID:31722693
Systematic Analysis of Alkaline/Neutral Invertase Genes Reveals the Involvement of Smi-miR399 in Regulation of SmNINV3 and SmNINV4 in Salvia miltiorrhiza. PMID:31717988
High-Throughput MicroRNA Profiles of Permissive Madin-Darby Canine Kidney Cell Line Infected with Influenza B Viruses. PMID:31717720
Exosomal MicroRNAs Associate With Neuropsychological Performance in Individuals With HIV Infection on Antiretroviral Therapy. PMID:31714431
Mature miR-99a Upregulation in the Amniotic Fluid Samples from Female Fetus Down Syndrome Pregnancies: A Pilot Study. PMID:31703316
MicroRNAs in Daphnia magna identified and characterized by deep sequencing, genome mapping and manual curation. PMID:31685896
MIENTURNET: an interactive web tool for microRNA-target enrichment and network-based analysis. PMID:31684860
ARS2 Plays Diverse Roles in DNA Damage Response, Fungal Development, and Pathogenesis in the Plant Pathogenic Fungus Fusarium graminearum. PMID:31681199
Multiomics analysis of tolerant interaction of potato with potato virus Y. PMID:31673114
Oct4-mediated reprogramming induces embryonic-like microRNA expression signatures in human fibroblasts. PMID:31673026
Unstable TTTTA/TTTCA expansions in MARCH6 are associated with Familial Adult Myoclonic Epilepsy type 3. PMID:31664039
Genome-Wide Analysis of Cotton miRNAs During Whitefly Infestation Offers New Insights into Plant-Herbivore Interaction. PMID:31661835
Water-deficit responsive microRNAs in the primary root growth zone of maize. PMID:31651253
Deep Small RNA Sequencing of BRAF V600E Mutated Papillary Thyroid Carcinoma With Lymph Node Metastasis. PMID:31649724
Comprehensive Analysis of Human microRNA-mRNA Interactome. PMID:31649721
miRTarBase 2020: updates to the experimentally validated microRNA-target interaction database. PMID:31647101
A novel miRNA negatively regulates resistance to Glomerella leaf spot by suppressing expression of an NBS gene in apple. PMID:31645951
Dynamics of microRNA expression during mouse prenatal development. PMID:31645363
Identification of microRNAs and relative target genes in Moringa oleifera leaf and callus. PMID:31641153
Retrotransposon gag-like 1 (RTL1) and the molecular evolution of self-targeting imprinted microRNAs. PMID:31640745
Silencing of one copy of the translation initiation factor eIFiso4G in Japanese plum (Prunus salicina) impacts susceptibility to Plum pox virus (PPV) and small RNA production. PMID:31640557
A semi-supervised machine learning framework for microRNA classification. PMID:31639051
miR-152 inhibits the proliferation and invasion of chordoma cells by targeting HOXC8. PMID:31638463
Sex-Dependent Changes in miRNA Expression in the Bed Nucleus of the Stria Terminalis Following Stress. PMID:31636537
Exchange of Small Regulatory RNAs between Plants and Their Pests. PMID:31636103
Transcriptomic profiling of cell-free and vesicular microRNAs from matched arterial and venous sera. PMID:31632620
Lidocaine inhibits cervical cancer cell proliferation and induces cell apoptosis by modulating the lncRNA-MEG3/miR-421/BTG1 pathway. PMID:31632519
A systemic study of indoxacarb resistance in Spodoptera litura revealed complex expression profiles and regulatory mechanism. PMID:31628365
miR-190-5p in human diseases. PMID:31624470
Identification of conserved and novel miRNAs responsive to heat stress in flowering Chinese cabbage using high-throughput sequencing. PMID:31624298
Long noncoding RNAs sustain high expression levels of exogenous octamer-binding protein 4 by sponging regulatory microRNAs during cellular reprogramming. PMID:31624145
Analysis of miRNAs in the Heads of Different Castes of the Bumblebee Bombus lantschouensis (Hymenoptera: Apidae). PMID:31623265
Plasma microRNA detection standardization test. PMID:31617231
Circulatory microRNAs: promising non-invasive prognostic and diagnostic biomarkers for parasitic infections. PMID:31617024
Non-coding RNAs as Regulators of Lymphangiogenesis in Lymphatic Development, Inflammation, and Cancer Metastasis. PMID:31616631
Improved annotation of Lutzomyia longipalpis genome using bioinformatics analysis. PMID:31616601
Small RNA and degradome deep sequencing reveal respective roles of cold-related microRNAs across Chinese wild grapevine and cultivated grapevine. PMID:31615400
High Expression of MicroRNA-196a is Associated with Progression of Hepatocellular Carcinoma in Younger Patients. PMID:31614906
Translational Potential of MicroRNAs for Preoperative Staging and Prediction of Chemoradiotherapy Response in Rectal Cancer. PMID:31614848
Differential expression of miR-4492 and IL-10 is involved in chronic rhinosinusitis with nasal polyps. PMID:31611936
PopTargs: a database for studying population evolutionary genetics of human microRNA target sites. PMID:31608947
MicroRNAs: Fine Tuners of Monocyte Heterogeneity. PMID:31608049
Continuous salt stress-induced long non-coding RNAs and DNA methylation patterns in soybean roots. PMID:31606033
SEAweb: the small RNA Expression Atlas web application. PMID:31598718
MirGeneDB 2.0: the metazoan microRNA complement. PMID:31598695
miRWoods: Enhanced precursor detection and stacked random forests for the sensitive detection of microRNAs. PMID:31596843
Benchmark of computational methods for predicting microRNA-disease associations. PMID:31594544
Phylogenetic Analysis to Explore the Association Between Anti-NMDA Receptor Encephalitis and Tumors Based on microRNA Biomarkers. PMID:31590348
Critical microRNAs and regulatory motifs in cleft palate identified by a conserved miRNA-TF-gene network approach in humans and mice. PMID:31589286
MicroRNA prediction based on 3D graphical representation of RNA secondary structures. PMID:31582883
Identification of Regulatory Networks of MicroRNAs and Their Targets in Response to Colletotrichum gloeosporioides in Tea Plant (Camellia sinensis L.). PMID:31572415
Stromal cells downregulate miR-23a-5p to activate protective autophagy in acute myeloid leukemia. PMID:31570693
Expression of microRNA in human retinal pigment epithelial cells following infection with Zaire ebolavirus. PMID:31570108
Adipocytes and microRNAs Crosstalk: A Key Tile in the Mosaic of Breast Cancer Microenvironment. PMID:31569710
Micro RNA Transcriptome Profile in Canine Oral Melanoma. PMID:31569419
LNRLMI: Linear neighbour representation for predicting lncRNA-miRNA interactions. PMID:31568653
Systematic assessment of commercially available low-input miRNA library preparation kits. PMID:31559901
Epigenetic Regulation of Innate Immunity by microRNAs. PMID:31557989
MicroRNA in Pancreatic Cancer: From Biology to Therapeutic Potential. PMID:31557962
MicroRNA-27a/b-3p and PPARG regulate SCAMP3 through a feed-forward loop during adipogenesis. PMID:31554889
Comprehensive Profiles of mRNAs and miRNAs Reveal Molecular Characteristics of Multiple Organ Physiologies and Development in Pigs. PMID:31552085
Reference gene and small RNA data from multiple tissues of Davidia involucrata Baill. PMID:31551451
Connecting the molecular function of microRNAs to cell differentiation dynamics. PMID:31551049
Genetic robustness of let-7 miRNA sequence-structure pairs. PMID:31548338
Hypermethylation-associated downregulation of microRNA-4456 in hypersexual disorder with putative influence on oxytocin signalling: A DNA methylation analysis of miRNA genes. PMID:31542994
Spatial sorting enables comprehensive characterization of liver zonation. PMID:31535084
Altered Fecal Small RNA Profiles in Colorectal Cancer Reflect Gut Microbiome Composition in Stool Samples. PMID:31530647
Associations of osteopontin and NT-proBNP with circulating miRNA levels in acute coronary syndrome. PMID:31530226
X-chromosome-linked miR548am-5p is a key regulator of sex disparity in the susceptibility to mitochondria-mediated apoptosis. PMID:31511496
Dietary bovine milk exosomes elicit changes in bacterial communities in C57BL/6 mice. PMID:31509432
Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API. PMID:31504201
Defining fallopian tube-derived miRNA cancer signatures. PMID:31503420
ABCD: Alzheimer's disease Biomarkers Comprehensive Database. PMID:31501752
The role of T cell miRNAs for regulatory T cell induction in islet autoimmunity. PMID:31500823
Systematic Assessment of Blood-Borne MicroRNAs Highlights Molecular Profiles of Endurance Sport and Carbohydrate Uptake. PMID:31500139
Differential expression of novel MicroRNAs from developing fetal heart of Gallus gallus domesticus implies a role in cardiac development. PMID:31494815
Crosstalk between microRNAs, the putative target genes and the lncRNA network in metabolic diseases. PMID:31485667
MicroRNA-mediated control of developmental lymphangiogenesis. PMID:31478836
Genotype-Specific Differences in Phosphorus Efficiency of Potato (Solanum tuberosum L.). PMID:31475025
Integration analysis for novel lncRNA markers predicting tumor recurrence in human colon adenocarcinoma. PMID:31470869
Three miRNAs cooperate with host genes involved in human cardiovascular disease. PMID:31464655
Numerical operations in living cells by programmable RNA devices. PMID:31457099
A Novel Computational Model for Predicting microRNA-Disease Associations Based on Heterogeneous Graph Convolutional Networks. PMID:31455028
Circular and Micro RNAs from Arabidopsis thaliana Flowers Are Simultaneously Isolated from AGO-IP Libraries. PMID:31454955
Adipocyte metabolism is improved by TNF receptor-targeting small RNAs identified from dried nuts. PMID:31453381
Herpes Simplex Virus Type 1-Encoded miR-H2-3p Manipulates Cytosolic DNA-Stimulated Antiviral Innate Immune Response by Targeting DDX41. PMID:31443275
Reconstruction of the lncRNA-miRNA-mRNA network based on competitive endogenous RNA reveal functional lncRNAs in Cerebral Infarction. PMID:31434962
lncRNA/circRNA‑miRNA‑mRNA ceRNA network in lumbar intervertebral disc degeneration. PMID:31432173
Evolutionary characteristics of intergenic transcribed regions indicate rare novel genes and widespread noisy transcription in the Poaceae. PMID:31431676
Differentially Expressed MiRNAs and tRNA Genes Affect Host Homeostasis During Highly Pathogenic Porcine Reproductive and Respiratory Syndrome Virus Infections in Young Pigs. PMID:31428130
IRNdb: the database of immunologically relevant non-coding RNAs. PMID:31414702
Regulation of KIR3DL3 Expression via Mirna. PMID:31405037
Quantitative principles of cis-translational control by general mRNA sequence features in eukaryotes. PMID:31399036
AGO-unbound cytosolic pool of mature miRNAs in plant cells reveals a novel regulatory step at AGO1 loading. PMID:31392979
Blockade of miR-140-3p prevents functional deterioration in afterload-enhanced engineered heart tissue. PMID:31391475
Joint RNA-Seq and miRNA Profiling Analyses to Reveal Molecular Mechanisms in Regulating Thickness of Pod Canopy in Brassica napus. PMID:31387302
Small RNA profiling in Pinus pinaster reveals the transcriptome of developing seeds and highlights differences between zygotic and somatic embryos. PMID:31383905
Functional genetic variants can mediate their regulatory effects through alteration of transcription factor binding. PMID:31375681
Serum miR-182 is a predictive biomarker for dichotomization of risk of hepatocellular carcinoma in rats. PMID:31373075
miR-21: a promising biomarker for the early detection of colon cancer. PMID:31371997
Genome-wide exploration and characterization of miR172/euAP2 genes in Brassica napus L. for likely role in flower organ development. PMID:31370790
Multi-view Co-training for microRNA Prediction. PMID:31358877
Repressive Gene Regulation Synchronizes Development with Cellular Metabolism. PMID:31353220
Stabilizing heterochromatin by DGCR8 alleviates senescence and osteoarthritis. PMID:31350386
Time-Resolved Small RNA Sequencing Unravels the Molecular Principles of MicroRNA Homeostasis. PMID:31350118
miR‑543 acts as a novel oncogene in oral squamous cell carcinoma by targeting CYP3A5. PMID:31322243
Genome-Wide Identification of Putative MicroRNAs in Cassava (Manihot esculenta Crantz) and Their Functional Landscape in Cellular Regulation. PMID:31321230
Circulating miR-141-3p, miR-143-3p and miR-200c-3p are differentially expressed in colorectal cancer and advanced adenomas. PMID:31316774
MicroRNA-889-3p targets FGFR2 to inhibit cervical cancer cell viability and invasion. PMID:31316631
Genomic non-redundancy of the mir-183/96/182 cluster and its requirement for hair cell maintenance. PMID:31311951
Regulation of terpenoid biosynthesis by miRNA in Persicaria minor induced by Fusarium oxysporum. PMID:31311515
Discovering and Constructing ceRNA-miRNA-Target Gene Regulatory Networks during Anther Development in Maize. PMID:31311189
The emerging roles of PIWI-interacting RNA in human cancers. PMID:31303794
Peptides as epigenetic modulators: therapeutic implications. PMID:31300053
MicroRNAs as modulators of longevity and the aging process. PMID:31297598
Identifying microRNAs and Their Editing Sites in Macaca mulatta. PMID:31284505
Epigenome-wide association study of DNA methylation and microRNA expression highlights novel pathways for human complex traits. PMID:31282290
Genome-wide identification and comparative analysis of drought-related microRNAs in two maize inbred lines with contrasting drought tolerance by deep sequencing. PMID:31276526
Analysis of common targets for circular RNAs. PMID:31266442
MicroRNA profiles in B-cell non-Hodgkin lymphoma. PMID:31263393
Clustered microRNAs hsa-miR-221-3p/hsa-miR-222-3p and their targeted genes might be prognostic predictors for hepatocellular carcinoma. PMID:31258758
MicroRNAs in porcine uterus and serum are affected by zearalenone and represent a new target for mycotoxin biomarker discovery. PMID:31253833
miRkwood: a tool for the reliable identification of microRNAs in plant genomes. PMID:31253093
miRBaseMiner, a tool for investigating miRBase content. PMID:31251108
Biological Significance of microRNA Biomarkers in ALS-Innocent Bystanders or Disease Culprits? PMID:31244752
Genome-Wide Analysis of ROS Antioxidant Genes in Resurrection Species Suggest an Involvement of Distinct ROS Detoxification Systems during Desiccation. PMID:31242611
GECKO is a genetic algorithm to classify and explore high throughput sequencing data. PMID:31240260
Design of RNA-targeting macrocyclic peptides. PMID:31239053
Partial trisomy 21 map: Ten cases further supporting the highly restricted Down syndrome critical region (HR-DSCR) on human chromosome 21. PMID:31237416
MepmiRDB: a medicinal plant microRNA database. PMID:31231773
Developmental atlas of the RNA editome in Sus scrofa skeletal muscle. PMID:31231762
miR-200c Prevents TGF-β1-Induced Epithelial-to-Mesenchymal Transition and Fibrogenesis in Mesothelial Cells by Targeting ZEB2 and Notch1. PMID:31226520
A simplified system for the effective expression and delivery of functional mature microRNAs in mammalian cells. PMID:31222181
miR-625-3p and lncRNA GAS5 in Liquid Biopsies for Predicting the Outcome of Malignant Pleural Mesothelioma Patients Treated with Neo-Adjuvant Chemotherapy and Surgery. PMID:31212997
miRNA contributions to pediatric-onset multiple sclerosis inferred from GWAS. PMID:31211169
Differentially expressed mRNAs, proteins and miRNAs associated to energy metabolism in skeletal muscle of beef cattle identified for low and high residual feed intake. PMID:31208329
Refinement of breast cancer molecular classification by miRNA expression profiles. PMID:31208318
MicroRNA-guided regulation of heat stress response in wheat. PMID:31195958
Comparing small urinary extracellular vesicle purification methods with a view to RNA sequencing-Enabling robust and non-invasive biomarker research. PMID:31194192
A Novel Method for Predicting Disease-Associated LncRNA-MiRNA Pairs Based on the Higher-Order Orthogonal Iteration. PMID:31191710
Mixed Diets Reduce the Oxidative Stress of Common Carp (Cyprinus carpio): Based on MicroRNA Sequencing. PMID:31191340
Overexpression of miRNA-25-3p inhibits Notch1 signaling and TGF-β-induced collagen expression in hepatic stellate cells. PMID:31189969
Cell Cycle-Dependent Regulation and Function of ARGONAUTE1 in Plants. PMID:31189739
microRNA-14 as an efficient suppressor to switch off ecdysone production after ecdysis in insects. PMID:31184522
Transcriptome-wide identification of microRNAs and functional insights inferred from microRNA-target pairs in Physalis angulata L. PMID:31184247
A novel lncRNA-miRNA-mRNA triple network identifies lncRNA TWF1 as an important regulator of miRNA and gene expression in coronary artery disease. PMID:31182968
Somatic Mutations in miRNA Genes in Lung Cancer-Potential Functional Consequences of Non-Coding Sequence Variants. PMID:31181801
gga-miRNA-18b-3p Inhibits Intramuscular Adipocytes Differentiation in Chicken by Targeting the ACOT13 Gene. PMID:31181634
Bioinformatics analysis of the regulatory lncRNA‑miRNA‑mRNA network and drug prediction in patients with hypertrophic cardiomyopathy. PMID:31180540
miR-181c-5p Exacerbates Hypoxia/Reoxygenation-Induced Cardiomyocyte Apoptosis via Targeting PTPN4. PMID:31178952
Integrated analysis of miRNAs and their targets reveals that miR319c/TCP2 regulates apical bud burst in tea plant (Camellia sinensis). PMID:31172343
Storage of Extracellular Vesicles in Human Milk, and MicroRNA Profiles in Human Milk Exosomes and Infant Formulas. PMID:31169664
Challenges in microRNAs' targetome prediction and validation. PMID:31169173
CRISPR/Cas9-targeted removal of unwanted sequences from small-RNA sequencing libraries. PMID:31165880
Measurement of microRNA with isothermal DNA amplification on fully automated immunoassay analyzers. PMID:31161320
A comparison of RNA extraction and sequencing protocols for detection of small RNAs in plasma. PMID:31159762
Uncovering anthocyanin biosynthesis related microRNAs and their target genes by small RNA and degradome sequencing in tuberous roots of sweetpotato. PMID:31159725
Genome-Wide Profiling of the Microrna Transcriptome Regulatory Network to Identify Putative Candidate Genes Associated with Backfat Deposition in Pigs. PMID:31159441
Identification of novel rhesus macaque microRNAs from naïve whole blood. PMID:31154603
Interpreting the MicroRNA-15/107 family: interaction identification by combining network based and experiment supported approach. PMID:31151434
Dual Epigenetic Regulation of ERα36 Expression in Breast Cancer Cells. PMID:31146345
Altered microRNA expression profiles in large offspring syndrome and Beckwith-Wiedemann syndrome. PMID:31144574
Pleiotropic microRNA-21 in pulmonary remodeling: novel insights for molecular mechanism and present advancements. PMID:31139230
Evolutionary Analyses Reveal Diverged Patterns of SQUAMOSA Promoter Binding Protein-Like (SPL) Gene Family in Oryza Genus. PMID:31139200
Identification of a Combined RNA Prognostic Signature in Adenocarcinoma of the Lung. PMID:31132294
Overexpression of Solanum habrochaites microRNA319d (sha-miR319d) confers chilling and heat stress tolerance in tomato (S. lycopersicum). PMID:31122194
Transcriptional consequences of impaired immune cell responses induced by cystic fibrosis plasma characterized via dual RNA sequencing. PMID:31118097
Clinical and biological impact of miR-18a expression in breast cancer after neoadjuvant chemotherapy. PMID:31115881
miR‑10b‑3p, miR‑8112 and let‑7j as potential biomarkers for autoimmune inner ear diseases. PMID:31115534
Retinal miRNA Functions in Health and Disease. PMID:31108959
Bioinformatics Resource Manager: a systems biology web tool for microRNA and omics data integration. PMID:31101000
Identification of potential biomarkers for diagnosis of pancreatic and biliary tract cancers by sequencing of serum microRNAs. PMID:31096984
OsteoporosAtlas: a human osteoporosis-related gene database. PMID:31086734
miRNA inhibition by proximity-enabled Dicer inactivation. PMID:31077820
High-throughput sequencing reveals microRNAs in response to heat stress in the head kidney of rainbow trout (Oncorhynchus mykiss). PMID:31076931
Heat shock protein DNAJA1 stabilizes PIWI proteins to support regeneration and homeostasis of planarian Schmidtea mediterranea. PMID:31076507
ALG-1 Influences Accurate mRNA Splicing Patterns in the Caenorhabditis elegans Intestine and Body Muscle Tissues by Modulating Splicing Factor Activities. PMID:31073019
Evaluating and Correcting Inherent Bias of microRNA Expression in Illumina Sequencing Analysis. PMID:31069233
Identification of a putative competitive endogenous RNA network for lung adenocarcinoma using TCGA datasets. PMID:31065463
MicroRNA profiling of mouse liver in response to DENV-1 infection by deep sequencing. PMID:31065454
The long non-coding RNA Cerox1 is a post transcriptional regulator of mitochondrial complex I catalytic activity. PMID:31045494
Idiosyncrasies of Viral Noncoding RNAs Provide Insights into Host Cell Biology. PMID:31039329
Molecular insights into an ancient form of Paget's disease of bone. PMID:31036632
Comprehensive analysis of miRNA and protein profiles within exosomes derived from canine lymphoid tumour cell lines. PMID:31034520
METTL1 Promotes let-7 MicroRNA Processing via m7G Methylation. PMID:31031083
Modulation of the IL-6-Signaling Pathway in Liver Cells by miRNAs Targeting gp130, JAK1, and/or STAT3. PMID:31026677
Postovulatory maternal transcriptome in Atlantic salmon and its relation to developmental potential of embryos. PMID:31014241
MicroRNAs and the Genetic Nexus of Brain Aging, Neuroinflammation, Neurodegeneration, and Brain Trauma. PMID:31011481
Identification of DNA methylation patterns predisposing for an efficient response to BCG vaccination in healthy BCG-naïve subjects. PMID:31010371
Analysis of microRNAs, phased small interfering RNAs and their potential targets in Rosarugosa Thunb. PMID:30999850
Identification and Characterization of Salt-Responsive MicroRNAs in Vicia faba by High-Throughput Sequencing. PMID:30999691
Adipokines Regulate the Expression of Tumor-Relevant MicroRNAs. PMID:30999294
Screening for mutations in selected miRNA genes in hypogonadotropic hypogonadism patients. PMID:30999277
Exosomal miRNAs as Novel Pharmacodynamic Biomarkers for Cancer Chemopreventive Agent Early Stage Treatments in Chemically Induced Mouse Model of Lung Squamous Cell Carcinoma. PMID:30987362
MicroRNA-related transcription factor regulatory networks in human colorectal cancer. PMID:30985693
Verification of miRNAs in ginseng decoction by high-throughput sequencing and quantitative real-time PCR. PMID:30984884
Novel and Conserved miRNAs Among Brazilian Pine and Other Gymnosperms. PMID:30984236
Emerging Roles of miRNAs in Brain Development and Perinatal Brain Injury. PMID:30984006
MicroRNA-145 Regulates Pathological Retinal Angiogenesis by Suppression of TMOD3. PMID:30981984
The role of the protein-RNA recognition code in neurodegeneration. PMID:30980111
Integrative Analysis Reveals Subtype-Specific Regulatory Determinants in Triple Negative Breast Cancer. PMID:30974831
Plant microRNAs: Biogenesis, Homeostasis, and Degradation. PMID:30972093
Global identification of functional microRNA-mRNA interactions in Drosophila. PMID:30967537
isoTar: Consensus Target Prediction with Enrichment Analysis for MicroRNAs Harboring Editing Sites and Other Variations. PMID:30963495
Characterization and Cloning of Grape Circular RNAs Identified the Cold Resistance-Related Vv-circATS1. PMID:30962290
Music-performance regulates microRNAs in professional musicians. PMID:30956902
Pan-cancer analysis on microRNA-associated gene activation. PMID:30956173
FCMDAP: using miRNA family and cluster information to improve the prediction accuracy of disease related miRNAs. PMID:30953512
miRNA signatures in childhood sarcomas and their clinical implications. PMID:30949930
Comprehensive analysis of miRNA profiles reveals the role of Schistosoma japonicum miRNAs at different developmental stages. PMID:30947738
MicroRNAs and Androgen Receptor: Emerging Players in Breast Cancer. PMID:30941159
Life-long reduction in myomiR expression does not adversely affect skeletal muscle morphology. PMID:30940834
Adaptive multi-view multi-label learning for identifying disease-associated candidate miRNAs. PMID:30933970
Association of mir-196a-2 rs11614913 and mir-149 rs2292832 Polymorphisms With Risk of Cancer: An Updated Meta-Analysis. PMID:30930933
Sequence and expression levels of circular RNAs in progenitor cell types during mouse corticogenesis. PMID:30926618
RNA-sequencing in ophthalmology research: considerations for experimental design and analysis. PMID:30911735
Small molecules with big roles in microRNA chemical biology and microRNA-targeted therapeutics. PMID:30900502
SSS-test: a novel test for detecting positive selection on RNA secondary structure. PMID:30898084
Hypomorphic mutation of the mouse Huntington's disease gene orthologue. PMID:30897080
Identification and functional analysis of microRNAs in rats following focal cerebral ischemia injury. PMID:30896823
Coalitional Game Theory Facilitates Identification of Non-Coding Variants Associated With Autism. PMID:30886520
PAmiRDB: A web resource for plant miRNAs targeting viruses. PMID:30874591
Identifying High Confidence microRNAs in the Developing Seeds of Jatropha curcas. PMID:30872797
Micromanagement of Developmental and Stress-Induced Senescence: The Emerging Role of MicroRNAs. PMID:30871088
De novo origination of MIRNAs through generation of short inverted repeats in target genes. PMID:30870071
LINE-2 transposable elements are a source of functional human microRNAs and target sites. PMID:30865625
Grape seed proanthocyanidins inhibit proliferation of pancreatic cancer cells by modulating microRNA expression. PMID:30854052
Identifying the differentially expressed microRNAs in esophagus squamous cell carcinoma of Kazakh patients in Xinjiang. PMID:30854040
Design, implementation, and operation of a rapid, robust named entity recognition web service. PMID:30850898
miRNA analysis with Prost! reveals evolutionary conservation of organ-enriched expression and post-transcriptional modifications in three-spined stickleback and zebrafish. PMID:30850632
Apoptotic tumor cell-derived microRNA-375 uses CD36 to alter the tumor-associated macrophage phenotype. PMID:30850595
TACCO, a Database Connecting Transcriptome Alterations, Pathway Alterations and Clinical Outcomes in Cancers. PMID:30846808
Small RNA-Seq Analysis Reveals miRNA Expression Dynamics Across Tissues in the Malaria Vector, Anopheles gambiae. PMID:30846481
Characterization of lncRNA-miRNA-mRNA Network to Reveal Potential Functional ceRNAs in Bovine Skeletal Muscle. PMID:30842787
Comparative genomics reveals origin of MIR159A-MIR159B paralogy, and complexities of PTGS interaction between miR159 and target GA-MYBs in Brassicaceae. PMID:30840147
Disruption of APOL1-miR193a Axis Induces Disorganization of Podocyte Actin Cytoskeleton. PMID:30837512
Gonadal microRNA Expression Profiles and Their Potential Role in Sex Differentiation and Gonadal Maturation of Mud Crab Scylla paramamosain. PMID:30835008
In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant. PMID:30832582
3D Cellular Architecture Affects MicroRNA and Protein Cargo of Extracellular Vesicles. PMID:30828519
Biclustering analysis of transcriptome big data identifies condition-specific microRNA targets. PMID:30820547
An estimate of the total number of true human miRNAs. PMID:30820533
OPTIMIR, a novel algorithm for integrating available genome-wide genotype data into miRNA sequence alignment analysis. PMID:30819774
miR‑146a‑5p targets TCSF and influences cell growth and apoptosis to repress NSCLC progression. PMID:30816543
Reconstruction and analysis of circRNA‑miRNA‑mRNA network in the pathology of cervical cancer. PMID:30816541
Identification of biomarkers associated with the recurrence of osteosarcoma using ceRNA regulatory network analysis. PMID:30816442
Significant improvement of miRNA target prediction accuracy in large datasets using meta-strategy based on comprehensive voting and artificial neural networks. PMID:30813885
MicroRNA in Brain pathology: Neurodegeneration the Other Side of the Brain Cancer. PMID:30813461
Main constraints for RNAi induced by expressed long dsRNA in mouse cells. PMID:30808654
Antarctic blackfin icefish genome reveals adaptations to extreme environments. PMID:30804520
Identification of copper (Cu) stress-responsive grapevine microRNAs and their target genes by high-throughput sequencing. PMID:30800341
Gene-Specific Intron Retention Serves as Molecular Signature that Distinguishes Melanoma from Non-Melanoma Cancer Cells in Greek Patients. PMID:30795533
Interplay between miRNAs and host genes and their role in cancer. PMID:30785618
High-throughput, Efficient, and Unbiased Capture of Small RNAs from Low-input Samples for Sequencing. PMID:30783180
Expanding the repertoire of miRNAs and miRNA-offset RNAs expressed in multiple myeloma by small RNA deep sequencing. PMID:30783080
Inferring the regulatory network of the miRNA-mediated response to biotic and abiotic stress in melon. PMID:30777009
Alterations in tissue microRNA after heat stress in the conscious rat: potential biomarkers of organ-specific injury. PMID:30770735
Small RNAs in Rat Sperm Are a Predictive and Sensitive Biomarker of Exposure to the Testicular Toxicant Ethylene Glycol Monomethyl Ether. PMID:30768127
PmiRDiscVali: an integrated pipeline for plant microRNA discovery and validation. PMID:30760208
Small RNA sequencing reveals dynamic microRNA expression of important nutrient metabolism during development of Camellia oleifera fruit. PMID:30745831
MicroRNA-dependent regulation of biomechanical genes establishes tissue stiffness homeostasis. PMID:30742093
Ciphers and Executioners: How 3'-Untranslated Regions Determine the Fate of Messenger RNAs. PMID:30740123
CeModule: an integrative framework for discovering regulatory patterns from genomic data in cancer. PMID:30732558
Murine trophoblast-derived and pregnancy-associated exosome-enriched extracellular vesicle microRNAs: Implications for placenta driven effects on maternal physiology. PMID:30730971
A genetic variant associated with multiple sclerosis inversely affects the expression of CD58 and microRNA-548ac from the same gene. PMID:30730892
Plant IsomiR Atlas: Large Scale Detection, Profiling, and Target Repertoire of IsomiRs in Plants. PMID:30723486
MicroRNAs in endometriosis: biological function and emerging biomarker candidates†. PMID:30721951
Comprehensive bioinformatics analysis of critical lncRNAs, mRNAs and miRNAs in non‑alcoholic fatty liver disease. PMID:30720100
JMJD2A facilitates growth and inhibits apoptosis of cervical cancer cells by downregulating tumor suppressor miR‑491‑5p. PMID:30720092
Homeostasis in the soybean miRNA396-GRF network is essential for productive soybean cyst nematode infections. PMID:30715445
CircFunBase: a database for functional circular RNAs. PMID:30715276
MicroRNA-144-3p targets relaxin/insulin-like family peptide receptor 1 (RXFP1) expression in lung fibroblasts from patients with idiopathic pulmonary fibrosis. PMID:30709904
Plant Extracellular Vesicles Contain Diverse Small RNA Species and Are Enriched in 10- to 17-Nucleotide "Tiny" RNAs. PMID:30705133
5p and 3p Strands of miR-34 Family Members Have Differential Effects in Cell Proliferation, Migration, and Invasion in Cervical Cancer Cells. PMID:30696040
Dgcr8 knockout approaches to understand microRNA functions in vitro and in vivo. PMID:30694346
Integrating random walk and binary regression to identify novel miRNA-disease association. PMID:30691413
Systematic Review of the Potential of MicroRNAs in Diffuse Large B Cell Lymphoma. PMID:30691158
EnhancerDB: a resource of transcriptional regulation in the context of enhancers. PMID:30689845
The Nematode Caenorhabditis elegans as a Model Organism to Study Metabolic Effects of ω-3 Polyunsaturated Fatty Acids in Obesity. PMID:30689684
The Role of miRNAs in Drosophila melanogaster Male Courtship Behavior. PMID:30683757
Sequence and structural properties of circular RNAs in the brain of nurse and forager honeybees (Apis mellifera). PMID:30683059
Modulation of miRNA expression in natural populations of A. thaliana along a wide altitudinal gradient of Indian Himalayas. PMID:30679759
Circular RNA hsa_circ_001783 regulates breast cancer progression via sponging miR-200c-3p. PMID:30670688
Prediction of functional microRNA targets by integrative modeling of microRNA binding and target expression data. PMID:30670076
An Exonic Switch Regulates Differential Accession of microRNAs to the Cd34 Transcript in Atherosclerosis Progression. PMID:30669689
Mechanistic Computational Models of MicroRNA-Mediated Signaling Networks in Human Diseases. PMID:30669429
DASHR 2.0: integrated database of human small non-coding RNA genes and mature products. PMID:30668832
Identification of microRNA clusters cooperatively acting on epithelial to mesenchymal transition in triple negative breast cancer. PMID:30657980
Assessing the Response of Small RNA Populations to Allopolyploidy Using Resynthesized Brassica napus Allotetraploids. PMID:30657939
Prognostic value of microRNAs in lung cancer: A systematic review and meta-analysis. PMID:30655979
Factors Regulating microRNA Expression and Function in Multiple Myeloma. PMID:30654527
Efficient Knockdown and Lack of Passenger Strand Activity by Dicer-Independent shRNAs Expressed from Pol II-Driven MicroRNA Scaffolds. PMID:30654192
Expanding the miRNA Repertoire in Atlantic Salmon; Discovery of IsomiRs and miRNAs Highly Expressed in Different Tissues and Developmental Stages. PMID:30641951
MiR-30c/PGC-1β protects against diabetic cardiomyopathy via PPARα. PMID:30635067
Bioinformatic analysis of long-lasting transcriptional and translational changes in the basolateral amygdala following acute stress. PMID:30629705
Structural Differences between Pri-miRNA Paralogs Promote Alternative Drosha Cleavage and Expand Target Repertoires. PMID:30625327
Exploration of miRNA-mediated fertility regulation network of cytoplasmic male sterility during flower bud development in soybean. PMID:30622860
Functional Characterization of microRNA171 Family in Tomato. PMID:30621201
Regulation of LINE-1 Elements by miR-128 Is Not Conserved in Mouse Embryonic Stem Cells. PMID:30619491
Interpreting Non-coding Genetic Variation in Multiple Sclerosis Genome-Wide Associated Regions. PMID:30619471
MDA-SKF: Similarity Kernel Fusion for Accurately Discovering miRNA-Disease Association. PMID:30619454
Potato miR828 Is Associated With Purple Tuber Skin and Flesh Color. PMID:30619382
A miRNA Host Response Signature Accurately Discriminates Acute Respiratory Infection Etiologies. PMID:30619110
Discovery and profiling of small RNAs from Puccinia triticina by deep sequencing and identification of their potential targets in wheat. PMID:30618015
A programmed wave of uridylation-primed mRNA degradation is essential for meiotic progression and mammalian spermatogenesis. PMID:30617251
microRNA-22 promotes megakaryocyte differentiation through repression of its target, GFI1. PMID:30617215
MicroRNAs and Long Non-coding RNAs in Genetic Diseases. PMID:30610665
Bias-minimized quantification of microRNA reveals widespread alternative processing and 3' end modification. PMID:30605524
MicroRNA expression profile in chronic nonbacterial prostatitis revealed by next-generation small RNA sequencing. PMID:30604696
Modulation of Bacterial sRNAs Activity by Epigenetic Modifications: Inputs from the Eukaryotic miRNAs. PMID:30602712
Cyclic Peptidomimetics as Inhibitor for miR-155 Biogenesis. PMID:30601666
Piwi-interacting RNAs (piRNAs) and cancer: Emerging biological concepts and potential clinical implications. PMID:30599187
Relationship between Fusobacterium nucleatum, inflammatory mediators and microRNAs in colorectal carcinogenesis. PMID:30598580
Novel link prediction for large-scale miRNA-lncRNA interaction network in a bipartite graph. PMID:30598112
FKL-Spa-LapRLS: an accurate method for identifying human microRNA-disease association. PMID:30598109
miRBaseConverter: an R/Bioconductor package for converting and retrieving miRNA name, accession, sequence and family information in different versions of miRBase. PMID:30598108
Genotype- and tissue-specific miRNA profiles and their targets in three alfalfa (Medicago sativa L) genotypes. PMID:30598106
Identification of pre-microRNAs by characterizing their sequence order evolution information and secondary structure graphs. PMID:30598066
A Novel Approach Based on a Weighted Interactive Network to Predict Associations of MiRNAs and Diseases. PMID:30597923
Constitutive Dicer1 phosphorylation accelerates metabolism and aging in vivo. PMID:30593561
Poly(A)-specific ribonuclease sculpts the 3' ends of microRNAs. PMID:30591540
Gonadotrophin-mediated miRNA expression in testis at onset of puberty in rhesus monkey: predictions on regulation of thyroid hormone activity and DLK1-DIO3 locus. PMID:30590698
miRNA-641 inhibits the proliferation, migration, and invasion and induces apoptosis of cervical cancer cells by directly targeting ZEB1. PMID:30588009
Copy number variation in the MSRB3 gene enlarges porcine ear size through a mechanism involving miR-584-5p. PMID:30587124
The spatiotemporal expression pattern of microRNAs in the developing mouse nervous system. PMID:30578296
Multiple trans QTL and one cis-regulatory deletion are associated with the differential expression of cone opsins in African cichlids. PMID:30563463
miRNAmotif-A Tool for the Prediction of Pre-miRNA⁻Protein Interactions. PMID:30562930
Routes of Zika virus dissemination in the testis and epididymis of immunodeficient mice. PMID:30559387
A novel semi-supervised model for miRNA-disease association prediction based on [Formula: see text]-norm graph. PMID:30547813
Non-Coding RNAs in Breast Cancer: Intracellular and Intercellular Communication. PMID:30545127
MiR-19a Overexpression in FTC-133 Cell Line Induces a More De-Differentiated and Aggressive Phenotype. PMID:30544640
The translation of non-canonical open reading frames controls mucosal immunity. PMID:30542152
Non-coding RNA in C9orf72-related amyotrophic lateral sclerosis and frontotemporal dementia: A perfect storm of dysfunction. PMID:30533567
Regulation of Adult Neurogenesis by Non-coding RNAs: Implications for Substance Use Disorders. PMID:30524229
High-yield production of human Dicer by transfection of human HEK293-EBNA1 cells grown in suspension. PMID:30522464
MER: a shell script and annotation server for minimal named entity recognition and linking. PMID:30519990
Circulating small non-coding RNAs associated with age, sex, smoking, body mass and physical activity. PMID:30518766
Concentrations of Purine Metabolites Are Elevated in Fluids from Adults and Infants and in Livers from Mice Fed Diets Depleted of Bovine Milk Exosomes and their RNA Cargos. PMID:30517726
Expression levels of miR-34-family microRNAs are associated with TP53 mutation status in head and neck squamous cell carcinoma. PMID:30515607
miRTrace reveals the organismal origins of microRNA sequencing data. PMID:30514392
An integrated omics analysis reveals molecular mechanisms that are associated with differences in seed oil content between Glycine max and Brassica napus. PMID:30514240
Bovine leukemia virus pre-miRNA genes' polymorphism. PMID:30513054
RNA-sequencing analysis of umbilical cord plasma microRNAs from healthy newborns. PMID:30507953
MicroRNA cluster miR199a/214 are differentially expressed in female and male rats following nicotine self-administration. PMID:30504847
miRNomes involved in imparting thermotolerance to crop plants. PMID:30498670
Evidence that microRNAs are part of the molecular toolkit regulating adult reproductive diapause in the mosquito, Culex pipiens. PMID:30496183
Tracking microRNA Processing Signals by Degradome Sequencing Data Analysis. PMID:30487815
Differentially-Expressed miRNAs in Ectopic Stromal Cells Contribute to Endometriosis Development: The Plausible Role of miR-139-5p and miR-375. PMID:30487429
miRNA length variation during macrophage stimulation confounds the interpretation of results: implications for miRNA quantification by RT-qPCR. PMID:30487268
Fibromyalgia: Genetics and epigenetics insights may provide the basis for the development of diagnostic biomarkers. PMID:30486733
Profiling microRNA expression in Atlantic killifish (Fundulus heteroclitus) gill and responses to arsenic and hyperosmotic stress. PMID:30476744
MiR-192, miR-200c and miR-17 are fibroblast-mediated inhibitors of colorectal cancer invasion. PMID:30473751
MicroRNAs as Regulators of Insulin Signaling: Research Updates and Potential Therapeutic Perspectives in Type 2 Diabetes. PMID:30469501
Investigating the Role of MicroRNA and Transcription Factor Co-regulatory Networks in Multiple Sclerosis Pathogenesis. PMID:30463275
Small RNA-Seq reveals novel miRNAs shaping the transcriptomic identity of rat brain structures. PMID:30456375
RATEmiRs: the rat atlas of tissue-specific and enriched miRNAs database. PMID:30453895
Synthetic RNA-based logic computation in mammalian cells. PMID:30451868
Exercise Training-Induced Changes in MicroRNAs: Beneficial Regulatory Effects in Hypertension, Type 2 Diabetes, and Obesity. PMID:30445764
Analysis of miRNA-seq in the liver of common carp (Cyprinus carpio L.) in response to different environmental temperatures. PMID:30443850
Mapping the Pax6 3' untranslated region microRNA regulatory landscape. PMID:30442116
Epstein-Barr Virus Infection of Cell Lines Derived from Diffuse Large B-Cell Lymphomas Alters MicroRNA Loading of the Ago2 Complex. PMID:30429351
funcExplorer: a tool for fast data-driven functional characterisation of high-throughput expression data. PMID:30428831
miRNA arm switching identifies novel tumour biomarkers. PMID:30425004
miRBase: from microRNA sequences to function. PMID:30423142
In silico identification and characterization of a diverse subset of conserved microRNAs in bioenergy crop Arundo donax L. PMID:30420632
C/VDdb: A multi-omics expression profiling database for a knowledge-driven approach in cardiovascular disease (CVD). PMID:30419069
Human Absorbable MicroRNA Prediction based on an Ensemble Manifold Ranking Model. PMID:30416843
MicroRNA-34/449 family and viral infections. PMID:30412711
Molecular Signature of Aluminum Hydroxide Adjuvant in Ovine PBMCs by Integrated mRNA and microRNA Transcriptome Sequencing. PMID:30405610
Multiple Regression Analysis Reveals MicroRNA Regulatory Networks in Oryza sativa under Drought Stress. PMID:30402456
Circular RNAs in Muscle Function and Disease. PMID:30400273
Vitamin D stimulates multiple microRNAs to inhibit CRH and other pro-labor genes in human placenta. PMID:30395535
RNAcentral: a hub of information for non-coding RNA sequences. PMID:30395267
Dysregulation of NCAPG, KNL1, miR-148a-3p, miR-193b-3p, and miR-1179 may contribute to the progression of gastric cancer. PMID:30390708
Autism spectrum disorder: insights into convergent mechanisms from transcriptomics. PMID:30390048
Astrocyte EV-Induced lincRNA-Cox2 Regulates Microglial Phagocytosis: Implications for Morphine-Mediated Neurodegeneration. PMID:30388619
Integrative analysis of microRNA and mRNA expression profiles in fetal rat model with anorectal malformation. PMID:30386697
Interplay Between MicroRNAs and Targeted Genes in Cellular Homeostasis of Adult Zebrafish (Danio rerio). PMID:30386173
Identification of key differentially expressed MicroRNAs in cancer patients through pan-cancer analysis. PMID:30384176
Diverse RNA interference strategies in early-branching metazoans. PMID:30382896
Circulating miRNA panels for specific and early detection in bladder cancer. PMID:30382619
The biological functions of target genes in pan-cancers and cell lines were predicted by miR-375 microarray data from GEO database and bioinformatics. PMID:30379973
New insights into tomato microRNAs. PMID:30375421
Prediction of Potential Small Molecule-Associated MicroRNAs Using Graphlet Interaction. PMID:30374302
SAMMSON fosters cancer cell fitness by concertedly enhancing mitochondrial and cytosolic translation. PMID:30374086
IGF2BP1 promotes SRF-dependent transcription in cancer in a m6A- and miRNA-dependent manner. PMID:30371874
TransmiR v2.0: an updated transcription factor-microRNA regulation database. PMID:30371815
Characterisation of infection associated microRNA and protein cargo in extracellular vesicles of Theileria annulata infected leukocytes. PMID:30370674
Arena-Idb: a platform to build human non-coding RNA interaction networks. PMID:30367585
HMDD v3.0: a database for experimentally supported human microRNA-disease associations. PMID:30364956
A Short Indel-Lacking-Resistance Gene Triggers Silencing of the Photosynthetic Machinery Components Through TYLCSV-Associated Endogenous siRNAs in Tomato. PMID:30364213
GENCODE reference annotation for the human and mouse genomes. PMID:30357393
liqDB: a small-RNAseq knowledge discovery database for liquid biopsy studies. PMID:30357370
Diagnosis of traumatic brain injury using miRNA signatures in nanomagnetically isolated brain-derived extracellular vesicles. PMID:30357245
NanoPARE: parallel analysis of RNA 5' ends from low-input RNA. PMID:30355603
MicroRNA 199a and the eNOS (Endothelial NO Synthase)/NO Pathway. PMID:30354226
Differences in circulating microRNA signature in Prader-Willi syndrome and non-syndromic obesity. PMID:30352401
Emerging microRNA Therapeutic Approaches for Cystic Fibrosis. PMID:30349480
MicroRNAs as Biomarkers of B-cell Lymphoma. PMID:30349178
Control of hepatic gluconeogenesis by Argonaute2. PMID:30348590
Virus Sensor RIG-I Represses RNA Interference by Interacting with TRBP through LGP2 in Mammalian Cells. PMID:30347765
The microRNA-29/PGC1α regulatory axis is critical for metabolic control of cardiac function. PMID:30346946
Unveiling gibberellin-responsive coding and long noncoding RNAs in maize. PMID:30341662
Major Domestication-Related Phenotypes in Indica Rice Are Due to Loss of miRNA-Mediated Laccase Silencing. PMID:30341147
Promoter Methylation-Regulated miR-145-5p Inhibits Laryngeal Squamous Cell Carcinoma Progression by Targeting FSCN1. PMID:30341010
Variants in the 14q32 miRNA cluster are associated with osteosarcoma risk in the Spanish population. PMID:30337581
EVmiRNA: a database of miRNA profiling in extracellular vesicles. PMID:30335161
Differential expression profiles of microRNAs in highly and weakly invasive/metastatic pancreatic cancer cells. PMID:30333874
On the Importance of Host MicroRNAs During Viral Infection. PMID:30333857
Opportunities for microRNAs in the Crowded Field of Cardiovascular Biomarkers. PMID:30332561
Integrated transcriptome, small RNA and degradome sequencing approaches provide insights into Ascochyta blight resistance in chickpea. PMID:30328278
MicroRNA-664-5p promotes myoblast proliferation and inhibits myoblast differentiation by targeting serum response factor and Wnt1. PMID:30323063
Identification of miR-708-5p in peripheral blood monocytes: Potential marker for postmenopausal osteoporosis in Mexican-Mestizo population. PMID:30322266
Deregulation of neuronal miRNAs induced by amyloid-β or TAU pathology. PMID:30314521
Framework for microRNA variant annotation and prioritization using human population and disease datasets. PMID:30302893
Uncovering association networks through an eQTL analysis involving human miRNAs and lincRNAs. PMID:30301969
Role of flow-sensitive microRNAs and long noncoding RNAs in vascular dysfunction and atherosclerosis. PMID:30300747
QuagmiR: a cloud-based application for isomiR big data analytics. PMID:30295744
Predicting microRNA targeting efficacy in Drosophila. PMID:30286781
LncRNADisease 2.0: an updated database of long non-coding RNA-associated diseases. PMID:30285109
Xeno-miRNet: a comprehensive database and analytics platform to explore xeno-miRNAs and their potential targets. PMID:30280028
Circular RNAs: Methodological challenges and perspectives in cardiovascular diseases. PMID:30277664
The role of miR-106p-5p in cervical cancer: from expression to molecular mechanism. PMID:30275981
Functional Role of miRNAs in the Progression of Breast Ductal Carcinoma in Situ. PMID:30273605
Non-coding RNA fragments account for the majority of annotated piRNAs expressed in somatic non-gonadal tissues. PMID:30271890
A Pan-Cancer Analysis Reveals High-Frequency Genetic Alterations in Mediators of Signaling by the TGF-β Superfamily. PMID:30268436
Control of seminal fluid protein expression via regulatory hubs in Drosophila melanogaster. PMID:30257913
Using transcriptomics to enable a plethodontid salamander (Bolitoglossa ramosi) for limb regeneration research. PMID:30253734
Pseudogenes Provide Evolutionary Evidence for the Competitive Endogenous RNA Hypothesis. PMID:30252115
Targeting the KEAP1/NRF2 pathway to manipulate the expression of oncogenic and oncosuppressive miRNAs in human leukemia. PMID:30250873
Inferring microRNA-Environmental Factor Interactions Based on Multiple Biological Information Fusion. PMID:30249984
MIR4532 gene variant rs60432575 influences the expression of KCNJ11 and the sulfonylureas-stimulated insulin secretion. PMID:30242599
Shifts in ovine cardiopulmonary microRNA expression in late gestation and the perinatal period. PMID:30231073
Discovery of microRNA-like RNAs during early fruiting body development in the model mushroom Coprinopsis cinerea. PMID:30231028
miRmapper: A Tool for Interpretation of miRNA⁻mRNA Interaction Networks. PMID:30223528
Conditional and interaction gene-set analysis reveals novel functional pathways for blood pressure. PMID:30218068
Dual-layer transposon repression in heads of Drosophila melanogaster. PMID:30217866
Beyond the 3'UTR binding-microRNA-induced protein truncation via DNA binding. PMID:30214689
Identification and functional analyses of new sesame miRNAs (Sesamum indicum L.) and their targets. PMID:30209739
Small RNA sequences derived from pre-microRNAs in the supraspliceosome. PMID:30203035
Hepatic Ago2-mediated RNA silencing controls energy metabolism linked to AMPK activation and obesity-associated pathophysiology. PMID:30201950
Global and Targeted miRNA Expression Profiling in Clear Cell Renal Cell Carcinoma Tissues Potentially Links miR-155-5p and miR-210-3p to both Tumorigenesis and Recurrence. PMID:30201497
Dme-Hsa Disease Database (DHDD): Conserved Human Disease-Related miRNA and Their Targeting Genes in Drosophila melanogaster. PMID:30200613
ADAR Mediated RNA Editing Modulates MicroRNA Targeting in Human Breast Cancer. PMID:30197877
An integrated analysis of mRNA and sRNA transcriptional profiles in Coffea arabica L. roots: insights on nitrogen starvation responses. PMID:30196429
Impact of miRNA-mRNA Profiling and Their Correlation on Medulloblastoma Tumorigenesis. PMID:30195786
Genome-wide microRNA analysis of HPV-positive self-samples yields novel triage markers for early detection of cervical cancer. PMID:30192375
microCLIP super learning framework uncovers functional transcriptome-wide miRNA interactions. PMID:30190538
Comprehensive analysis of circRNA expression pattern and circRNA-miRNA-mRNA network in the pathogenesis of atherosclerosis in rabbits. PMID:30187887
A Novel Computational Method for the Identification of Potential miRNA-Disease Association Based on Symmetric Non-negative Matrix Factorization and Kronecker Regularized Least Square. PMID:30186308
Significance of non-coding circular RNAs and micro RNAs in the pathogenesis of cardiovascular diseases. PMID:30177556
Differentially Tolerized Mouse Antigen Presenting Cells Share a Common miRNA Signature Including Enhanced mmu-miR-223-3p Expression Which Is Sufficient to Imprint a Protolerogenic State. PMID:30174602
Decreasing miRNA sequencing bias using a single adapter and circularization approach. PMID:30173660
Functional features defining the efficacy of cholesterol-conjugated, self-deliverable, chemically modified siRNAs. PMID:30169779
miRge 2.0 for comprehensive analysis of microRNA sequencing data. PMID:30153801
MDHGI: Matrix Decomposition and Heterogeneous Graph Inference for miRNA-disease association prediction. PMID:30142158
Identifying and characterizing functional 3' nucleotide addition in the miRNA pathway. PMID:30138674
Circular RNA architecture and differentiation during leaf bud to young leaf development in tea (Camellia sinensis). PMID:30128600
The Diverse Roles of microRNAs at the Host⁻Virus Interface. PMID:30126238
Olea europaea small RNA with functional homology to human miR34a in cross-kingdom interaction of anti-tumoral response. PMID:30120339
The methyltransferase HEN1 is required in Nematostella vectensis for microRNA and piRNA stability as well as larval metamorphosis. PMID:30118479
Regulation of microRNA function in animals. PMID:30108335
QsRNA-seq: a method for high-throughput profiling and quantifying small RNAs. PMID:30107842
Identification and characterization of miRNAs in the gills of the mud crab (Scylla paramamosain) in response to a sudden drop in salinity. PMID:30107782
Revealing a human p53 universe. PMID:30107566
The Parkinson's disease gene product DJ-1 modulates miR-221 to promote neuronal survival against oxidative stress. PMID:30107296
Identification and characterization of ncRNA-associated ceRNA networks in Arabidopsis leaf development. PMID:30103673
Computational resources associating diseases with genotypes, phenotypes and exposures. PMID:30102366
Predicting MicroRNA Mediated Gene Regulation between Human and Viruses. PMID:30096814
Mosquito Innate Immunity. PMID:30096752
Small RNAs detected in exosomes derived from the MH7A synovial fibroblast cell line with TNF-α stimulation. PMID:30096164
Comparative transcriptomics of limb regeneration: Identification of conserved expression changes among three species of Ambystoma. PMID:30092345
Comparative effects of a candidate modified-risk tobacco product Aerosol and cigarette smoke on human organotypic small airway cultures: a systems toxicology approach. PMID:30090554
Implication of miR-612 and miR-1976 in the regulation of TP53 and CD40 and their relationship in the response to specific weight-loss diets. PMID:30089130
Extracellular microRNAs and oxidative stress in liver injury: a systematic mini review. PMID:30087537
piRNN: deep learning algorithm for piRNA prediction. PMID:30083483
Small RNA-seq analysis of single porcine blastocysts revealed that maternal estradiol-17beta exposure does not affect miRNA isoform (isomiR) expression. PMID:30081835
MiRNA-BD: an evidence-based bioinformatics model and software tool for microRNA biomarker discovery. PMID:30081733
Bromodomain and extra-terminal domain inhibition modulates the expression of pathologically relevant microRNAs in diffuse large B-cell lymphoma. PMID:30076183
Identification of MicroRNAs and Their Target Genes Associated with Ovarian Development in Black Tiger Shrimp (Penaeus monodon) Using High-Throughput Sequencing. PMID:30072718
Correlation between miR-200 Family Overexpression and Cancer Prognosis. PMID:30069274
miRVIT: A Novel miRNA Database and Its Application to Uncover Vitis Responses to Flavescence dorée Infection. PMID:30065744
Molecular profile of urine extracellular vesicles from normo-functional kidneys reveal minimal differences between living and deceased donors. PMID:30064375
Commentary: MicroRNA-221/222 Family Counteracts Myocardial Fibrosis in Pressure Overload-Induced Heart Failure. PMID:30062098
Metagenomic sequencing suggests a diversity of RNA interference-like responses to viruses across multicellular eukaryotes. PMID:30059538
Expanding the miRNA Transcriptome of Human Kidney and Renal Cell Carcinoma. PMID:30057905
Small RNAs Are Trafficked from the Epididymis to Developing Mammalian Sperm. PMID:30057273
Milk exosomes are bioavailable and distinct microRNA cargos have unique tissue distribution patterns. PMID:30054561
HDncRNA: a comprehensive database of non-coding RNAs associated with heart diseases. PMID:30053237
Death of new microRNA genes in Drosophila via gradual loss of fitness advantages. PMID:30049791
MicroRNA-214-3p in the Kidney Contributes to the Development of Hypertension. PMID:30049682
Expansion of Capsicum annuum fruit is linked to dynamic tissue-specific differential expression of miRNA and siRNA profiles. PMID:30044813
Transgenic microRNA-14 rice shows high resistance to rice stem borer. PMID:30044049
Selective IL-23 Inhibition by Risankizumab Modulates the Molecular Profile in the Colon and Ileum of Patients With Active Crohn's Disease: Results From a Randomised Phase II Biopsy Sub-study. PMID:30032288
Plasma small ncRNA pair panels as novel biomarkers for early-stage lung adenocarcinoma screening. PMID:30029594
Analysis of Brachypodium miRNA targets: evidence for diverse control during stress and conservation in bioenergy crops. PMID:30029591
LIN28 Selectively Modulates a Subclass of Let-7 MicroRNAs. PMID:30029005
Importance of miRNA stability and alternative primary miRNA isoforms in gene regulation during Drosophila development. PMID:30024380
Potential Role of MicroRNAs in the Regulation of Antiviral Responses to Influenza Infection. PMID:30022983
Changes in the microRNA expression profile during blood storage. PMID:30018790
The Nefarious Nexus of Noncoding RNAs in Cancer. PMID:30018188
Deciphering Non-coding RNAs in Cardiovascular Health and Disease. PMID:30013975
MicroRNA-539 inhibits colorectal cancer progression by directly targeting SOX4. PMID:30013665
Cancerin: A computational pipeline to infer cancer-associated ceRNA interaction networks. PMID:30011266
Incorporating uracil and 5-halouracils into short peptide nucleic acids for enhanced recognition of A-U pairs in dsRNAs. PMID:30011039
Identification and Analysis of Human Sex-biased MicroRNAs. PMID:30005964
miRAW: A deep learning-based approach to predict microRNA targets by analyzing whole microRNA transcripts. PMID:30005074
Identification of miRNAs and their targets in regulating tuberous root development in radish using small RNA and degradome analyses. PMID:30003000
Evaluation of the performance of serum miRNAs as normalizers in microRNA studies focused on cardiovascular disease. PMID:29997921
A comprehensive review of web-based resources of non-coding RNAs for plant science research. PMID:29989090
Micro-RNAs involved in cellular proliferation have altered expression profiles in granulosa of young women with diminished ovarian reserve. PMID:29987422
Highly focused transcriptional response of Anopheles coluzzii to O'nyong nyong arbovirus during the primary midgut infection. PMID:29986645
A diet defined by its content of bovine milk exosomes and their RNA cargos has moderate effects on gene expression, amino acid profiles and grip strength in skeletal muscle in C57BL/6 mice. PMID:29986306
MicroRNAs mediate the senescence-associated decline of NRF2 in endothelial cells. PMID:29986211
A genome-wide scan for correlated mutations detects macromolecular and chromatin interactions in Arabidopsis thaliana. PMID:29986106
Trends in the development of miRNA bioinformatics tools. PMID:29982332
Dynamic microRNA activity identifies therapeutic targets in trastuzumab-resistant HER2+ breast cancer. PMID:29981261
Tissue and exosomal miRNA editing in Non-Small Cell Lung Cancer. PMID:29976955
MicroRNA miR-223 as regulator of innate immunity. PMID:29969525
Analysis of Purines and Pyrimidines distribution over miRNAs of Human, Gorilla, Chimpanzee, Mouse and Rat. PMID:29967426
Global characterization of the Dicer-like protein DrnB roles in miRNA biogenesis in the social amoeba Dictyostelium discoideum. PMID:29966484
Clinical evaluation of 4 types of microRNA in serum as biomarkers of esophageal squamous cell carcinoma. PMID:29963194
PASSPORT-seq: A Novel High-Throughput Bioassay to Functionally Test Polymorphisms in Micro-RNA Target Sites. PMID:29963077
IsopiRBank: a research resource for tracking piRNA isoforms. PMID:29961820
LncCeRBase: a database of experimentally validated human competing endogenous long non-coding RNAs. PMID:29961817
MicroRNA Control of TGF-β Signaling. PMID:29958433
xMD-miRNA-seq to generate near in vivo miRNA expression estimates in colon epithelial cells. PMID:29955168
Kynurenine 3-Monooxygenase Gene Associated With Nicotine Initiation and Addiction: Analysis of Novel Regulatory Features at 5' and 3'-Regions. PMID:29951083
Base-pairing probability in the microRNA stem region affects the binding and editing specificity of human A-to-I editing enzymes ADAR1-p110 and ADAR2. PMID:29950133
MicroRNAs as Potential Biomarkers in Merkel Cell Carcinoma. PMID:29949882
Evidence for plant-derived xenomiRs based on a large-scale analysis of public small RNA sequencing data from human samples. PMID:29949574
Association Genetics in Populus Reveal the Allelic Interactions of Pto-MIR167a and Its Targets in Wood Formation. PMID:29946324
Comparison of multi-lineage differentiation of hiPSCs reveals novel miRNAs that regulate lineage specification. PMID:29941943
Degradation of unmethylated miRNA/miRNA*s by a DEDDy-type 3' to 5' exoribonuclease Atrimmer 2 in Arabidopsis. PMID:29941559
LGP2 virus sensor regulates gene expression network mediated by TRBP-bound microRNAs. PMID:29939295
A mixed antagonistic/synergistic miRNA repression model enables accurate predictions of multi-input miRNA sensor activity. PMID:29934631
Opposing roles of microRNA Argonautes during Caenorhabditis elegans aging. PMID:29927939
MicroRNA-guided prioritization of genome-wide association signals reveals the importance of microRNA-target gene networks for complex traits in cattle. PMID:29921979
Dysregulated MicroRNA Involvement in Multiple Sclerosis by Induction of T Helper 17 Cell Differentiation. PMID:29915595
Integrated microRNA and mRNA expression profiling reveals a complex network regulating pomegranate (Punica granatum L.) seed hardness. PMID:29915181
Analysis of the Influence of microRNAs in Lithium Response in Bipolar Disorder. PMID:29904359
Fine-mapping of prostate cancer susceptibility loci in a large meta-analysis identifies candidate causal variants. PMID:29892050
Evaluation of serum extracellular vesicle isolation methods for profiling miRNAs by next-generation sequencing. PMID:29887978
Global miRNA expression profile reveals novel molecular players in aneurysmal subarachnoid haemorrhage. PMID:29884860
Discovering Structural Motifs in miRNA Precursors from the Viridiplantae Kingdom. PMID:29882777
TAM 2.0: tool for MicroRNA set analysis. PMID:29878154
The circulating non-coding RNA landscape for biomarker research: lessons and prospects from cardiovascular diseases. PMID:29877319
Function, dynamics and evolution of network motif modules in integrated gene regulatory networks of worm and plant. PMID:29873777
Transcriptomic and functional analyses unveil the role of long non-coding RNAs in anthocyanin biosynthesis during sea buckthorn fruit ripening. PMID:29873696
RegenDbase: a comparative database of noncoding RNA regulation of tissue regeneration circuits across multiple taxa. PMID:29872545
Expanding the horizons of microRNA bioinformatics. PMID:29871895
ARMOUR - A Rice miRNA: mRNA Interaction Resource. PMID:29868062
The Glucose-Regulated MiR-483-3p Influences Key Signaling Pathways in Cancer. PMID:29867024
Evolutionary divergence of 3' UTRs in cichlid fishes. PMID:29866078
MicroRNA and Breast Cancer: Understanding Pathogenesis, Improving Management. PMID:29861413
Stage-dependent piRNAs in chicken implicated roles in modulating male germ cell development. PMID:29859049
MicroRNA-17 and the prognosis of human carcinomas: a systematic review and meta-analysis. PMID:29858404
Antisense Oligonucleotide-Mediated Terminal Intron Retention of the SMN2 Transcript. PMID:29858094
miR-208a-3p Suppresses Osteoblast Differentiation and Inhibits Bone Formation by Targeting ACVR1. PMID:29858067
Unravelling miRNA regulation in yield of rice (Oryza sativa) based on differential network model. PMID:29855560
Characterization of Transcription Termination-Associated RNAs: New Insights into their Biogenesis, Tailing, and Expression in Primary Tumors. PMID:29854718
A Novel Model for Predicting Associations between Diseases and LncRNA-miRNA Pairs Based on a Newly Constructed Bipartite Network. PMID:29853986
Motif scraper: a cross-platform, open-source tool for identifying degenerate nucleotide motif matches in FASTA files. PMID:29850891
The genomic features of parasitism, Polyembryony and immune evasion in the endoparasitic wasp Macrocentrus cingulum. PMID:29848290
CBD: a biomarker database for colorectal cancer. PMID:29846545
Comprehensive identification of microRNA arm selection preference in lung cancer: miR-324-5p and -3p serve oncogenic functions in lung cancer. PMID:29844840
Identifying miRNA and gene modules of colon cancer associated with pathological stage by weighted gene co-expression network analysis. PMID:29844680
An androgen receptor negatively induced long non-coding RNA ARNILA binding to miR-204 promotes the invasion and metastasis of triple-negative breast cancer. PMID:29844570
Genome-wide microRNA screening in Nile tilapia reveals pervasive isomiRs' transcription, sex-biased arm switching and increasing complexity of expression throughout development. PMID:29844338
MicroRNA and cellular targets profiling reveal miR-217 and miR-576-3p as proviral factors during Oropouche infection. PMID:29813068
Aberrant expression of miR-153 is associated with the poor prognosis of cervical cancer. PMID:29805649
Microarray analysis of miRNA expression profiles following whole body irradiation in a mouse model. PMID:29799276
MicroRNAs as Potential Serum Biomarkers for Early Detection of Ectopic Pregnancy. PMID:29796356
Involvement of SNPs in miR-3117 and miR-3689d2 in childhood acute lymphoblastic leukemia risk. PMID:29796161
On the possibility of death of new genes - evidence from the deletion of de novo microRNAs. PMID:29792159
Regulatory roles of miR-155 and let-7b on the expression of inflammation-related genes in THP-1 cells: effects of fatty acids. PMID:29790117
Non-coding RNAs in Various Stages of Liver Disease Leading to Hepatocellular Carcinoma: Differential Expression of miRNAs, piRNAs, lncRNAs, circRNAs, and sno/mt-RNAs. PMID:29789629
Well-Annotated microRNAomes Do Not Evidence Pervasive miRNA Loss. PMID:29788279
Biomarker microRNAs for prostate cancer metastasis: screened with a network vulnerability analysis model. PMID:29784056
Erythrocyte microRNA sequencing reveals differential expression in relapsing-remitting multiple sclerosis. PMID:29783973
Correlation Analyses Reveal a Limited Role of Transcription in Genome-Wide Differential MicroRNA Expression in Mammals. PMID:29780403
Targeting the Metastatic Bone Microenvironment by MicroRNAs. PMID:29780354
Integrated analysis of colorectal cancer microRNA datasets: identification of microRNAs associated with tumor development. PMID:29779016
Genome-Wide Posttranscriptional Dysregulation by MicroRNAs in Human Asthma as Revealed by Frac-seq. PMID:29769273
Bioinformatic analysis of the ssc-miR-146b upstream promoter region. PMID:29766997
Genome-wide identification and comprehensive analysis of microRNAs and phased small interfering RNAs in watermelon. PMID:29764387
Hookworm Secreted Extracellular Vesicles Interact With Host Cells and Prevent Inducible Colitis in Mice. PMID:29760697
MicroRNA and transcriptome analysis in periocular Sebaceous Gland Carcinoma. PMID:29760516
Breast cancer associated germline structural variants harboring small noncoding RNAs impact post-transcriptional gene regulation. PMID:29760470
Preconception Carrier Screening by Genome Sequencing: Results from the Clinical Laboratory. PMID:29754767
Functional and transcriptomic insights into pathogenesis of R9C phospholamban mutation using human induced pluripotent stem cell-derived cardiomyocytes. PMID:29752948
Assessing the functional association of intronic miRNAs with their host genes. PMID:29752351
Expression and Regulation Profile of Mature MicroRNA in the Pig: Relevance to Xenotransplantation. PMID:29750148
The deterministic role of 5-mers in microRNA-gene targeting. PMID:29749304
Identification of polymorphisms in the bovine collagenous lectins and their association with infectious diseases in cattle. PMID:29744529
Alternative miRNAs? Human sequences misidentified as plant miRNAs in plant studies and in human plasma. PMID:29744036
Integrative analyses of genes and microRNA expressions in human trisomy 21 placentas. PMID:29739397
Circular RNA expression and regulatory network prediction in posterior cingulate astrocytes in elderly subjects. PMID:29739336
SPORTS1.0: A Tool for Annotating and Profiling Non-coding RNAs Optimized for rRNA- and tRNA-derived Small RNAs. PMID:29730207
Cigarette smoke and chewing tobacco alter expression of different sets of miRNAs in oral keratinocytes. PMID:29728663
MicroRNA-focused CRISPR-Cas9 library screen reveals fitness-associated miRNAs. PMID:29720387
Molecular mechanisms of long noncoding RNAs and their role in disease pathogenesis. PMID:29719633
microRNA profiles and functions in mosquitoes. PMID:29718912
Integrated Characterization of MicroRNA and mRNA Transcriptome in Papillary Thyroid Carcinoma. PMID:29713312
The Rosa genome provides new insights into the domestication of modern roses. PMID:29713014
miRNA-based signatures in cerebrospinal fluid as potential diagnostic tools for early stage Parkinson's disease. PMID:29707120
Virulent duck enteritis virus infected DEF cells generate a unique pattern of viral microRNAs and a novel set of host microRNAs. PMID:29704894
The deregulated microRNAome contributes to the cellular response to aneuploidy. PMID:29703144
Co-sequencing and novel delayed anti-correlation identify function for pancreatic enriched microRNA biomarkers in a rat model of acute pancreatic injury. PMID:29699496
Differentially expressed microRNAs associated with changes of transcript levels in detoxification pathways and DDT-resistance in the Drosophila melanogaster strain 91-R. PMID:29698530
Circulating non-coding RNAs in biomarker-guided cardiovascular therapy: a novel tool for personalized medicine? PMID:29688487
Regulation of Large Number of Weak Targets-New Insights from Twin-microRNAs. PMID:29688430
Distinct gene networks modulate floral induction of autonomous maize and photoperiod-dependent teosinte. PMID:29688423
miRToolsGallery: a tag-based and rankable microRNA bioinformatics resources database portal. PMID:29688355
Characterization of Human Salivary Extracellular RNA by Next-generation Sequencing. PMID:29685897
Profiling and Bioinformatic Analyses Indicate Differential circRNA and miRNA/isomiR Expression and Interactions. PMID:29682564
Towards annotating the plant epigenome: the Arabidopsis thaliana small RNA locus map. PMID:29679055
IFN-λ and microRNAs are important modulators of the pulmonary innate immune response against influenza A (H1N2) infection in pigs. PMID:29677213
Comparative transcriptome analysis to investigate the potential role of miRNAs in milk protein/fat quality. PMID:29674689
Interrogating the Functions of PRDM9 Domains in Meiosis. PMID:29674518
Integrated Analysis Reveals That miR-193b, miR-671, and TREM-1 Correlate With a Good Response to Treatment of Human Localized Cutaneous Leishmaniasis Caused by Leishmania braziliensis. PMID:29670621
Differential Expression of Several miRNAs and the Host Genes AATK and DNM2 in Leukocytes of Sporadic ALS Patients. PMID:29670510
miRNAome expression profiles in the gonads of adult Melopsittacus undulatus. PMID:29666766
SeedVicious: Analysis of microRNA target and near-target sites. PMID:29664927
RNA-Seq reveals the existence of a CDKN1C-E2F1-TP53 axis that is altered in human T-cell lymphoblastic lymphomas. PMID:29661169
IGF2BP1 enhances an aggressive tumor cell phenotype by impairing miRNA-directed downregulation of oncogenic factors. PMID:29660014
miRNAtools: Advanced Training Using the miRNA Web of Knowledge. PMID:29657302
Deciphering microRNAs and Their Associated Hairpin Precursors in a Non-Model Plant, Abelmoschus esculentus. PMID:29657290
MicroRNA MultiTool: A Software for Identifying Modified and Unmodified Human microRNA Using Mass Spectrometry. PMID:29657285
oncoNcRNA: A Web Portal for Exploring the Non-Coding RNAs with Oncogenic Potentials in Human Cancers. PMID:29657279
High Percentage of Isomeric Human MicroRNA and Their Analytical Challenges. PMID:29657271
miRNAs in Tuberculosis: New Avenues for Diagnosis and Host-Directed Therapy. PMID:29651283
Pathobiologic Roles of Epstein-Barr Virus-Encoded MicroRNAs in Human Lymphomas. PMID:29649101
MicroRNA profiling during directed differentiation of cortical interneurons from human-induced pluripotent stem cells. PMID:29632804
Parathyroid hormone-induced down-regulation of miR-532-5p for matrix metalloproteinase-13 expression in rat osteoblasts. PMID:29626351
Exploration of miRNAs and target genes of cytoplasmic male sterility line in cotton during flower bud development. PMID:29626311
Glucocorticoid receptor overexpression slightly shifts microRNA expression patterns in triple-negative breast cancer. PMID:29620157
m6ASNP: a tool for annotating genetic variants by m6A function. PMID:29617790
Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context. PMID:29617668
The Potential Role of Platelet-Related microRNAs in the Development of Cardiovascular Events in High-Risk Populations, Including Diabetic Patients: A Review. PMID:29615970
Breast cancer identification via modeling of peripherally circulating miRNAs. PMID:29607263
A computational biology approach of a genome-wide screen connected miRNAs to obesity and type 2 diabetes. PMID:29605715
miRNA-mediated 'tug-of-war' model reveals ceRNA propensity of genes in cancers. PMID:29603582
Follistatin-like 1 in development and human diseases. PMID:29594389
Identification of cold stress responsive microRNAs in two winter turnip rape (Brassica rapa L.) by high throughput sequencing. PMID:29587648
Identification of Blueberry miRNAs and Their Targets Based on High-Throughput Sequencing and Degradome Analyses. PMID:29587414
Distinct telomere length and molecular signatures in seminoma and non-seminoma of testicular germ cell tumor. PMID:29579225
miRNAs control HAM1 functions at the single-cell-layer level and are essential for normal embryogenesis in Arabidopsis. PMID:29574557
Metazoan MicroRNAs. PMID:29570994
miR-126-5p by direct targeting of JNK-interacting protein-2 (JIP-2) plays a key role in Theileria-infected macrophage virulence. PMID:29570727
Genome-wide identification, putative functionality and interactions between lncRNAs and miRNAs in Brassica species. PMID:29563515
Long Non-coding MIR205HG Depletes Hsa-miR-590-3p Leading to Unrestrained Proliferation in Head and Neck Squamous Cell Carcinoma. PMID:29556360
Competitive endogenous RNA networks: integrated analysis of non-coding RNA and mRNA expression profiles in infantile hemangioma. PMID:29552284
MicroRNA-126 affects ovarian cancer cell differentiation and invasion by modulating expression of vascular endothelial growth factor. PMID:29552211
The Oncogenic Relevance of miR-17-92 Cluster and Its Paralogous miR-106b-25 and miR-106a-363 Clusters in Brain Tumors. PMID:29547527
Cell Cycle Regulation of Stem Cells by MicroRNAs. PMID:29541978
miR-3140 suppresses tumor cell growth by targeting BRD4 via its coding sequence and downregulates the BRD4-NUT fusion oncoprotein. PMID:29540837
NDAMDA: Network distance analysis for MiRNA-disease association prediction. PMID:29532987
Analysis of microRNA profile of Anopheles sinensis by deep sequencing and bioinformatic approaches. PMID:29530087
Global analysis of A-to-I RNA editing reveals association with common disease variants. PMID:29527417
Identification and comparative analysis of microRNAs from tomato varieties showing contrasting response to ToLCV infections. PMID:29515314
MicroRNA duplication accelerates the recruitment of new targets during vertebrate evolution. PMID:29511046
Are microRNAs Important Players in HIV-1 Infection? An Update. PMID:29510515
Small RNA-seq analysis of circulating miRNAs to identify phenotypic variability in Friedreich's ataxia patients. PMID:29509186
An integrative transcriptomic approach to identify depot differences in genes and microRNAs in adipose tissues from high fat fed mice. PMID:29507687
Differentially expressed microRNAs in lung adenocarcinoma invert effects of copy number aberrations of prognostic genes. PMID:29507679
Novel and Haplotype Specific MicroRNAs Encoded by the Major Histocompatibility Complex. PMID:29497078
Identification and characterization of microRNAs in the intestinal tissues of sheep (Ovis aries). PMID:29489866
Baculovirus-Encoded MicroRNAs: A Brief Overview and Future Prospects. PMID:29487989
Small RNAs in Circulating Exosomes of Cancer Patients: A Minireview. PMID:29485611
Deep sequencing and in silico analysis of small RNA library reveals novel miRNA from leaf Persicaria minor transcriptome. PMID:29479512
Recently Evolved Tumor Suppressor Transcript TP73-AS1 Functions as Sponge of Human-Specific miR-941. PMID:29474580
Small RNA populations revealed by blocking rRNA fragments in Drosophila melanogaster reproductive tissues. PMID:29474379
Evaluation of Bioinformatics Approaches for Next-Generation Sequencing Analysis of microRNAs with a Toxicogenomics Study Design. PMID:29467792
A Genomic View of Alternative Splicing of Long Non-coding RNAs during Rice Seed Development Reveals Extensive Splicing and lncRNA Gene Families. PMID:29467783
MiR-205-5p and miR-342-3p cooperate in the repression of the E2F1 transcription factor in the context of anticancer chemotherapy resistance. PMID:29464002
The miRNA Mirage: How Close Are We to Finding a Non-Invasive Diagnostic Biomarker in Endometriosis? A Systematic Review. PMID:29463003
An in silico argument for mitochondrial microRNA as a determinant of primary non function in liver transplantation. PMID:29449571
Identification and characterization of microRNA in the lung tissue of pigs with different susceptibilities to PCV2 infection. PMID:29448950
Integrated microRNA and mRNA network analysis of the human myometrial transcriptome in the transition from quiescence to labor. PMID:29447339
Strong conservation of inbred mouse strain microRNA loci but broad variation in brain microRNAs due to RNA editing and isomiR expression. PMID:29445025
Downregulation of MicroRNA eca-mir-128 in Seminal Exosomes and Enhanced Expression of CXCL16 in the Stallion Reproductive Tract Are Associated with Long-Term Persistence of Equine Arteritis Virus. PMID:29444949
MicroRNA-598 Inhibits Cell Proliferation and Invasion of Glioblastoma by Directly Targeting Metastasis Associated in Colon Cancer-1 (MACC1). PMID:29444745
microRNA expression profiles of scar and normal tissue from patients with posterior urethral stricture caused by pelvic fracture urethral distraction defects. PMID:29436608
miRNAexpression profile of retinal pigment epithelial cells under oxidative stress conditions. PMID:29435412
FRG3, a Target of slmiR482e-3p, Provides Resistance against the Fungal Pathogen Fusarium oxysporum in Tomato. PMID:29434609
Transcriptome-wide identification and functional prediction of novel and flowering-related circular RNAs from trifoliate orange (Poncirus trifoliata L. Raf.). PMID:29417269
Endurance training remodels sperm-borne small RNA expression and methylation at neurological gene hotspots. PMID:29416570
Drosha drives the formation of DNA:RNA hybrids around DNA break sites to facilitate DNA repair. PMID:29416038
Mirna biogenesis pathway is differentially regulated during adipose derived stromal/stem cell differentiation. PMID:29411671
Characterization of Trichuris muris secreted proteins and extracellular vesicles provides new insights into host-parasite communication. PMID:29410780
Unraveling the determinants of microRNA mediated regulation using a massively parallel reporter assay. PMID:29410437
Comprehensive network of miRNA-induced intergenic interactions and a biological role of its core in cancer. PMID:29402894
circRNA_0046366 inhibits hepatocellular steatosis by normalization of PPAR signaling. PMID:29391755
Identification of microRNAs in corpus luteum of pregnancy in buffalo (Bubalus bubalis) by deep sequencing. PMID:29387104
Elucidating the Small Regulatory RNA Repertoire of the Sea Anemone Anemonia viridis Based on Whole Genome and Small RNA Sequencing. PMID:29385567
Integrated analysis of mRNA and miRNA expression profiles in livers of Yimeng black pigs with extreme phenotypes for backfat thickness. PMID:29383120
Novel evidence for a PIWI-interacting RNA (piRNA) as an oncogenic mediator of disease progression, and a potential prognostic biomarker in colorectal cancer. PMID:29382334
Dynamic evolution of regulatory element ensembles in primate CD4+ T cells. PMID:29379187
RNase H2-Dependent Polymerase Chain Reaction and Elimination of Confounders in Sample Collection, Storage, and Analysis Strengthen Evidence That microRNAs in Bovine Milk Are Bioavailable in Humans. PMID:29378054
Expression profiling of snoRNAs in normal hematopoiesis and AML. PMID:29365324
Development and validation of a plasma-based melanoma biomarker suitable for clinical use. PMID:29360813
Integration analysis of microRNA and mRNA paired expression profiling identifies deregulated microRNA-transcription factor-gene regulatory networks in ovarian endometriosis. PMID:29357938
Genetic polymorphism in Hsp90AA1 gene is associated with the thermotolerance in Chinese Holstein cows. PMID:29353403
Dual Strategies for Argonaute2-Mediated Biogenesis of Erythroid miRNAs Underlie Conserved Requirements for Slicing in Mammals. PMID:29351846
microRNAs associated with early neural crest development in Xenopus laevis. PMID:29347911
Functional Roles of Sex-Biased, Growth Hormone-Regulated MicroRNAs miR-1948 and miR-802 in Young Adult Mouse Liver. PMID:29346554
Characterization and selective incorporation of small non-coding RNAs in non-small cell lung cancer extracellular vesicles. PMID:29344346
Revisiting Criteria for Plant MicroRNA Annotation in the Era of Big Data. PMID:29343505
Regulation of Bone Metabolism by microRNAs. PMID:29335833
Sex differences in the late first trimester human placenta transcriptome. PMID:29335024
Characterization of the late embryogenesis abundant (LEA) proteins family and their role in drought stress tolerance in upland cotton. PMID:29334890
Non-coding RNAs and plant male sterility: current knowledge and future prospects. PMID:29332167
Discovery of microRNA-target modules of African rice (Oryza glaberrima) under salinity stress. PMID:29330361
The Dynamics of microRNA Transcriptome in Bovine Corpus Luteum during Its Formation, Function, and Regression. PMID:29326752
Comparative analysis of miRNA expression profiles in transgenic and non-transgenic rice using miRNA-Seq. PMID:29321648
Non-coding RNAs in hepatocellular carcinoma: molecular functions and pathological implications. PMID:29317776
Methods for Using Small Non-Coding RNAs to Improve Recombinant Protein Expression in Mammalian Cells. PMID:29315258
Systematic analysis reveals tumor-enhancing and -suppressing microRNAs in Drosophila epithelial tumors. PMID:29312571
Characterization and Function of MicroRNA∗s in Plants. PMID:29312425
Salicylic Acid Perturbs sRNA-Gibberellin Regulatory Network in Immune Response of Potato to Potato virus Y Infection. PMID:29312421
Extracellular Vesicle MicroRNA Transfer in Lung Diseases. PMID:29311962
Expression of Alternative Ago2 Isoform Associated with Loss of microRNA-Driven Translational Repression in Mouse Oocytes. PMID:29307557
Up-regulated Pro-inflammatory MicroRNAs (miRNAs) in Alzheimer's disease (AD) and Age-Related Macular Degeneration (AMD). PMID:29302837
A miRNA181a/NFAT5 axis links impaired T cell tolerance induction with autoimmune type 1 diabetes. PMID:29298866
Reconstructing evolutionary trees in parallel for massive sequences. PMID:29297337
MicroRNAs sequencing unveils distinct molecular subgroups of plasmablastic lymphoma. PMID:29296171
The red deer Cervus elaphus genome CerEla1.0: sequencing, annotating, genes, and chromosomes. PMID:29294181
MicroRNAs in CSF as prodromal biomarkers for Huntington disease in the PREDICT-HD study. PMID:29282329
Exploring the RNA landscape of endothelial exosomes. PMID:29282313
RNA Interference Therapies for an HIV-1 Functional Cure. PMID:29280961
miR-222 isoforms are differentially regulated by type-I interferon. PMID:29263133
Identification of Differentially Expressed miRNAs in Colorado Potato Beetles (Leptinotarsa decemlineata (Say)) Exposed to Imidacloprid. PMID:29258192
Comprehensive Expression Analysis of microRNAs and mRNAs in Synovial Tissue from a Mouse Model of Early Post-Traumatic Osteoarthritis. PMID:29255152
Aedes aegypti microRNA miR-2b regulates ubiquitin-related modifier to control chikungunya virus replication. PMID:29247247
Central role of the p53 pathway in the noncoding-RNA response to oxidative stress. PMID:29242407
MicroRNA-211 promotes non-small-cell lung cancer proliferation and invasion by targeting MxA. PMID:29238200
MicroRNAs regulate the sesquiterpenoid hormonal pathway in Drosophila and other arthropods. PMID:29237851
Genome-Wide Profiling of Small RNAs and Degradome Revealed Conserved Regulations of miRNAs on Auxin-Responsive Genes during Fruit Enlargement in Peaches. PMID:29236054
The landscape of miRNA editing in animals and its impact on miRNA biogenesis and targeting. PMID:29233923
Deep experimental profiling of microRNA diversity, deployment, and evolution across the Drosophila genus. PMID:29233922
MKRMDA: multiple kernel learning-based Kronecker regularized least squares for MiRNA-disease association prediction. PMID:29233191
Unique expression signatures of circular RNAs in response to DNA tumor virus SV40 infection. PMID:29228714
RNAStructuromeDB: A genome-wide database for RNA structural inference. PMID:29222504
A tRNA fragment, tRF5-Glu, regulates BCAR3 expression and proliferation in ovarian cancer cells. PMID:29221134
MiRIAD update: using alternative polyadenylation, protein interaction network analysis and additional species to enhance exploration of the role of intragenic miRNAs and their host genes. PMID:29220447
NRDTD: a database for clinically or experimentally supported non-coding RNAs and drug targets associations. PMID:29220444
A comprehensive profile of circulating RNAs in human serum. PMID:29219730
Current Research on Non-Coding Ribonucleic Acid (RNA). PMID:29206165
mirDIP 4.1-integrative database of human microRNA target predictions. PMID:29194489
Genome-wide discovery of tissue-specific miRNAs in clusterbean (Cyamopsis tetragonoloba) indicates their association with galactomannan biosynthesis. PMID:29193664
MicroRNA dynamics at the onset of primordial germ and somatic cell sex differentiation during mouse embryonic gonad development. PMID:29187591
Analysis of MicroRNA Expression in Newborns with Differential Birth Weight Using Newborn Screening Cards. PMID:29182561
Over-expression of miR-146b and its regulatory role in intestinal epithelial cell viability, proliferation, and apoptosis in piglets. PMID:29178964
Small RNA sequencing profiles of mir-181 and mir-221, the most relevant microRNAs in acute myeloid leukemia. PMID:29172404
NRF2 regulates endothelial glycolysis and proliferation with miR-93 and mediates the effects of oxidized phospholipids on endothelial activation. PMID:29161413
DNA Methylation of miR-7 is a Mechanism Involved in Platinum Response through MAFG Overexpression in Cancer Cells. PMID:29158814
Development of transcriptome based web genomic resources of yellow mosaic disease in Vigna mungo. PMID:29158627
Identification of drought-responsive miRNAs and physiological characterization of tea plant (Camellia sinensis L.) under drought stress. PMID:29157225
Genome-wide identification of conserved and novel microRNAs in one bud and two tender leaves of tea plant (Camellia sinensis) by small RNA sequencing, microarray-based hybridization and genome survey scaffold sequences. PMID:29157210
DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions. PMID:29156006
The role of microRNAs in chronic respiratory disease: recent insights. PMID:29148977
Molecular Crosstalking among Noncoding RNAs: A New Network Layer of Genome Regulation in Cancer. PMID:29147648
Intron retention enhances gene regulatory complexity in vertebrates. PMID:29141666
Genome-wide identification of miRNAs and lncRNAs in Cajanus cajan. PMID:29141604
Differential Content of Proteins, mRNAs, and miRNAs Suggests that MDSC and Their Exosomes May Mediate Distinct Immune Suppressive Functions. PMID:29139296
Random walks on mutual microRNA-target gene interaction network improve the prediction of disease-associated microRNAs. PMID:29137601
MicroRNA-7-5p mediates the signaling of hepatocyte growth factor to suppress oncogenes in the MCF-10A mammary epithelial cell. PMID:29133945
Identification of miRNA-mediated drought responsive multi-tiered regulatory network in drought tolerant rice, Nagina 22. PMID:29133823
Integrative microRNA and mRNA deep-sequencing expression profiling in endemic Burkitt lymphoma. PMID:29132323
Comprehensive genomic analysis of the CNGC gene family in Brassica oleracea: novel insights into synteny, structures, and transcript profiles. PMID:29132315
miRTarBase update 2018: a resource for experimentally validated microRNA-target interactions. PMID:29126174
MiRNA-513a-5p inhibits progesterone receptor expression and constitutes a risk factor for breast cancer: the hOrmone and Diet in the ETiology of breast cancer prospective study. PMID:29126102
Deep sequencing and analyses of miRNAs, isomiRs and miRNA induced silencing complex (miRISC)-associated miRNome in primary human chondrocytes. PMID:29123165
Identification and characterization of intestine microRNAs and targets in red swamp crayfish, Procambarus clarkii infected with white spot syndrome virus. PMID:29121070
Maternal effects of microRNAs in early embryogenesis. PMID:29120257
A Role for the F-Box Protein HAWAIIAN SKIRT in Plant microRNA Function. PMID:29114080
A microRNA feedback loop regulates global microRNA abundance during aging. PMID:29114017
Comparative analysis of the microRNA transcriptome between yak and cattle provides insight into high-altitude adaptation. PMID:29109913
MicroRNA-874-mediated inhibition of the major G1/S phase cyclin, CCNE1, is lost in osteosarcomas. PMID:29109143
Role of Melt Curve Analysis in Interpretation of Nutrigenomics' MicroRNA Expression Data. PMID:29109097
MSDD: a manually curated database of experimentally supported associations among miRNAs, SNPs and human diseases. PMID:29106642
MNDR v2.0: an updated resource of ncRNA-disease associations in mammals. PMID:29106639
High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing. PMID:29106417
Identification and verification of potential piRNAs from domesticated yak testis. PMID:29101267
Identification and expression profiling of microRNAs involved in the stigma exsertion under high-temperature stress in tomato. PMID:29096602
Effect of Wenxin Granules on Gap Junction and MiR-1 in Rats with Myocardial Infarction. PMID:29094045
The ISB Cancer Genomics Cloud: A Flexible Cloud-Based Platform for Cancer Genomics Research. PMID:29092928
Bleomycin Can Cleave an Oncogenic Noncoding RNA. PMID:29084369
Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation. PMID:29079676
lncRNASNP2: an updated database of functional SNPs and mutations in human and mouse lncRNAs. PMID:29077939
mirTrans: a resource of transcriptional regulation on microRNAs for human cell lines. PMID:29077896
The Pattern of microRNA Binding Site Distribution. PMID:29077021
Diversity of P-element piRNA production among M' and Q strains and its association with P-M hybrid dysgenesis in Drosophila melanogaster. PMID:29075336
Profiling of miRNAs and target genes related to cystogenesis in ADPKD mouse models. PMID:29074972
Overexpression of herbaceous peony miR156e-3p improves anthocyanin accumulation in transgenic Arabidopsis thaliana lateral branches. PMID:29071176
Constructing prediction models from expression profiles for large scale lncRNA-miRNA interaction profiling. PMID:29069317
MicroRNA Expression-Based Model Indicates Event-Free Survival in Pediatric Acute Myeloid Leukemia. PMID:29068783
Small non-coding RNA transcriptome of the NCI-60 cell line panel. PMID:29064465
MicroRNA-like RNAs in plant pathogenic fungus Fusarium oxysporum f. sp. niveum are involved in toxin gene expression fine tuning. PMID:29062675
Repertoire of noncoding RNAs in corpus luteum of early pregnancy in buffalo (Bubalus bubalis). PMID:29062204
Computational tools for plant small RNA detection and categorization. PMID:29059285
In silico analysis of the grapefruit sRNAome, transcriptome and gene regulation in response to CTV-CDVd co-infection. PMID:29058618
A Systematic Review of Computational Drug Discovery, Development, and Repurposing for Ebola Virus Disease Treatment. PMID:29053626
Transcriptome assembly in Suaeda aralocaspica to reveal the distinct temporal gene/miRNA alterations between the dimorphic seeds during germination. PMID:29052505
Genome-wide identification of microRNAs responsive to Ectropis oblique feeding in tea plant (Camellia sinensis L.). PMID:29051614
Network analysis of EMT and MET micro-RNA regulation in breast cancer. PMID:29051564
A Genome-Wide Scan for MicroRNA-Related Genetic Variants Associated With Primary Open-Angle Glaucoma. PMID:29049738
Common microRNA-mRNA interactions exist among distinct porcine iPSC lines independent of their metastable pluripotent states. PMID:29048434
Cellular and molecular characterization of gametogenic progression in ex vivo cultured prepuberal mouse testes. PMID:29047395
Pluripotent Stem Cell-Derived Hematopoietic Progenitors Are Unable to Downregulate Key Epithelial-Mesenchymal Transition-Associated miRNAs. PMID:29047185
Dynamic and Modularized MicroRNA Regulation and Its Implication in Human Cancers. PMID:29042600
MicroRNAs as biomarkers for liver injury: Current knowledge, challenges and future prospects. PMID:29042291
miR-200b downregulates Kruppel Like Factor 2 (KLF2) during acute hypoxia in human endothelial cells. PMID:29042072
Human Argonaute3 has slicer activity. PMID:29040713
RISE: a database of RNA interactome from sequencing experiments. PMID:29040625
MicroRNAs as Biomarkers in Thyroid Carcinoma. PMID:29038786
miRCarta: a central repository for collecting miRNA candidates. PMID:29036653
miRandola 2017: a curated knowledge base of non-invasive biomarkers. PMID:29036351
m6AVar: a database of functional variants involved in m6A modification. PMID:29036329
A Smoking-Associated miRNA-mRNA Coexpression Network. PMID:29030404
MicroRNA Signature of Cigarette Smoking and Evidence for a Putative Causal Role of MicroRNAs in Smoking-Related Inflammation and Target Organ Damage. PMID:29030400
OncomiR: an online resource for exploring pan-cancer microRNA dysregulation. PMID:29028907
The Plasticizer Bisphenol A Perturbs the Hepatic Epigenome: A Systems Level Analysis of the miRNome. PMID:29027980
MicroRNAs-Based Inter-Domain Communication between the Host and Members of the Gut Microbiome. PMID:29021788
Integrated analysis of coding genes and non-coding RNAs during hair follicle cycle of cashmere goat (Capra hircus). PMID:29020916
Non-coding RNAs and Their Roles in Stress Response in Plants. PMID:29017967
Simultaneous visualization of the subfemtomolar expression of microRNA and microRNA target gene using HILO microscopy. PMID:28989695
Porcine model of progressive cardiac hypertrophy and fibrosis with secondary postcapillary pulmonary hypertension. PMID:28985746
Circular RNA expression profiles and features in human tissues: a study using RNA-seq data. PMID:28984197
Identification of genome-wide non-canonical spliced regions and analysis of biological functions for spliced sequences using Read-Split-Fly. PMID:28984182
The GBAP1 pseudogene acts as a ceRNA for the glucocerebrosidase gene GBA by sponging miR-22-3p. PMID:28983119
Frequent miRNA-convergent fusion gene events in breast cancer. PMID:28983113
Naturally existing isoforms of miR-222 have distinct functions. PMID:28981911
'Multi-omic' data analysis using O-miner. PMID:28981577
Drosophila Model for the Analysis of Genesis of LIM-kinase 1-Dependent Williams-Beuren Syndrome Cognitive Phenotypes: INDELs, Transposable Elements of the Tc1/Mariner Superfamily and MicroRNAs. PMID:28979292
Role of microRNAs in obesity and obesity-related diseases. PMID:28974990
Analysis of primary microRNA loci from nascent transcriptomes reveals regulatory domains governed by chromatin architecture. PMID:28973462
Plasma exosomal miRNAs-based prognosis in metastatic kidney cancer. PMID:28969022
Intrinsic structural variability in GNRA-like tetraloops: insight from molecular dynamics simulation. PMID:28965269
TDP-43 regulates cancer-associated microRNAs. PMID:28952053
Plant small RNAs: the essential epigenetic regulators of gene expression for salt-stress responses and tolerance. PMID:28951953
Comparative analysis of miRNAs of two rapeseed genotypes in response to acetohydroxyacid synthase-inhibiting herbicides by high-throughput sequencing. PMID:28950015
Small Non-coding RNA Abundance in Adrenocortical Carcinoma: A Footprint of a Rare Cancer. PMID:28943972
MicroRNAs in Heart Failure, Cardiac Transplantation, and Myocardial Recovery: Biomarkers with Therapeutic Potential. PMID:28940102
Computational prediction of human disease-related microRNAs by path-based random walk. PMID:28938576
A comprehensive, cell specific microRNA catalogue of human peripheral blood. PMID:28934507
MicroRNA expression in a phosphaturic mesenchymal tumour. PMID:28932769
Integrated analysis of microRNA and mRNA expression profiles during the sex-differentiation sensitive period in oriental river prawn, Macrobrachium nipponense. PMID:28931848
Identification of Circulating miRNAs Differentially Regulated by Opioid Treatment. PMID:28926935
DNA Methylomes Reveal Biological Networks Involved in Human Eye Development, Functions and Associated Disorders. PMID:28924151
MiR-148a impairs Ras/ERK signaling in B lymphocytes by targeting SOS proteins. PMID:28915601
Urine miR-21-5p as a potential non-invasive biomarker for gastric cancer. PMID:28915598
Combinatorial ensemble miRNA target prediction of co-regulation networks with non-prediction data. PMID:28911111
Web-based NGS data analysis using miRMaster: a large-scale meta-analysis of human miRNAs. PMID:28911107
miR-217-5p induces apoptosis by directly targeting PRKCI, BAG3, ITGAV and MAPK1 in colorectal cancer cells. PMID:28905214
Evaluation and control of miRNA-like off-target repression for RNA interference. PMID:28905147
Meta-analysis of microRNAs expression in head and neck cancer: uncovering association with outcome and mechanisms. PMID:28903437
miR-150 Regulates Memory CD8 T Cell Differentiation via c-Myb. PMID:28903040
Catalog of Differentially Expressed Long Non-Coding RNA following Activation of Human and Mouse Innate Immune Response. PMID:28900427
Long noncoding RNAs in the model species Brachypodium distachyon. PMID:28900227
miRNA Expression Profile and Effect of Wenxin Granule in Rats with Ligation-Induced Myocardial Infarction. PMID:28894747
MicroRNA Profiling Reveals Distinct Profiles for Tissue-Derived and Cultured Endothelial Cells. PMID:28887500
Identification of high-confidence RNA regulatory elements by combinatorial classification of RNA-protein binding sites. PMID:28886744
Splenic microRNA Expression Profiles and Integration Analyses Involved in Host Responses to Salmonella enteritidis Infection in Chickens. PMID:28884089
RNA Sequencing and Co-expressed Long Non-coding RNA in Modern and Wild Wheats. PMID:28878329
A miRNA catalogue and ncRNA annotation of the short-living fish Nothobranchius furzeri. PMID:28874118
Multiple miRNAs jointly regulate the biosynthesis of ecdysteroid in the holometabolous insects, Chilo suppressalis. PMID:28860304
Ancient human miRNAs are more likely to have broad functions and disease associations than young miRNAs. PMID:28859623
Meta-signature of human endometrial receptivity: a meta-analysis and validation study of transcriptomic biomarkers. PMID:28855728
Transposable Element Misregulation Is Linked to the Divergence between Parental piRNA Pathways in Drosophila Hybrids. PMID:28854624
Comprehensive transcriptome analyses reveal tomato plant responses to tobacco rattle virus-based gene silencing vectors. PMID:28852064
MicroRNA-induced silencing in epilepsy: Opportunities and challenges for clinical application. PMID:28850760
5'-UTR and 3'-UTR Regulation of MICB Expression in Human Cancer Cells by Novel microRNAs. PMID:28850101
Oyster RNA-seq Data Support the Development of Malacoherpesviridae Genomics. PMID:28848525
Analysis of the miR-34 family functions in breast cancer reveals annotation error of miR-34b. PMID:28848235
Genome-wide analysis of DUF221 domain-containing gene family in Oryza species and identification of its salinity stress-responsive members in rice. PMID:28846681
Small RNA profiles from Panax notoginseng roots differing in sizes reveal correlation between miR156 abundances and root biomass levels. PMID:28842680
Rat Genome and Model Resources. PMID:28838068
MicroRNA-31 inhibits RhoA-mediated tumor invasion and chemotherapy resistance in MKN-45 gastric adenocarcinoma cells. PMID:28836853
Discovery and characterization of the feline miRNAome. PMID:28835705
Small RNA Transcriptome of Hibiscus Syriacus Provides Insights into the Potential Influence of microRNAs in Flower Development and Terpene Synthesis. PMID:28835019
A New Network-Based Strategy for Predicting the Potential miRNA-mRNA Interactions in Tumorigenesis. PMID:28831388
unitas: the universal tool for annotation of small RNAs. PMID:28830358
An integrated expression atlas of miRNAs and their promoters in human and mouse. PMID:28829439
Response of miR156-SPL Module during the Red Peel Coloration of Bagging-Treated Chinese Sand Pear (Pyrus pyrifolia Nakai). PMID:28824447
Reprogramming human gallbladder cells into insulin-producing β-like cells. PMID:28813430
A Circulating MicroRNA Signature Serves as a Diagnostic and Prognostic Indicator in Sarcoidosis. PMID:28812922
Global mapping of miRNA-target interactions in cattle (Bos taurus). PMID:28811507
Sex differences in microRNA-mRNA networks: examination of novel epigenetic programming mechanisms in the sexually dimorphic neonatal hypothalamus. PMID:28810930
The role of microRNAs in oral lichenoid disorders. Systematic review. PMID:28809371
A method for extracting and characterizing RNA from urine: For downstream PCR and RNAseq analysis. PMID:28803886
MicroRNA expression in bone marrow-derived human multipotent Stromal cells. PMID:28800721
Modeling miRNA-mRNA interactions that cause phenotypic abnormality in breast cancer patients. PMID:28793339
mRNA 3' uridylation and poly(A) tail length sculpt the mammalian maternal transcriptome. PMID:28792939
Novel Modulators of Asthma and Allergy: Exosomes and MicroRNAs. PMID:28785260
MicroRNAs are differentially abundant during Aedes albopictus diapause maintenance but not diapause induction. PMID:28776797
Role of G protein-coupled receptors-microRNA interactions in gastrointestinal pathophysiology. PMID:28774868
MicroRNAs in the miR-17 and miR-15 families are downregulated in chronic kidney disease with hypertension. PMID:28771472
SNPs, linkage disequilibrium, and chronic mountain sickness in Tibetan Chinese. PMID:28770234
MicroRNAs as Important Players in Host-Adenovirus Interactions. PMID:28769895
Tough decoy targeting of predominant let-7 miRNA species in adult human hematopoietic cells. PMID:28768505
Structural Foundations of RNA Silencing by Argonaute. PMID:28757069
Genomic innovations, transcriptional plasticity and gene loss underlying the evolution and divergence of two highly polyphagous and invasive Helicoverpa pest species. PMID:28756777
Annexin A1 down-regulation in head and neck squamous cell carcinoma is mediated via transcriptional control with direct involvement of miR-196a/b. PMID:28754915
Improving the Quality of Positive Datasets for the Establishment of Machine Learning Models for pre-microRNA Detection. PMID:28753538
Acute resistance exercise modulates microRNA expression profiles: Combined tissue and circulatory targeted analyses. PMID:28750051
Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus. PMID:28749982
Bivariate genome-wide association meta-analysis of pediatric musculoskeletal traits reveals pleiotropic effects at the SREBF1/TOM1L2 locus. PMID:28743860
Genome-wide identification of Hami melon miRNAs with putative roles during fruit development. PMID:28742088
Low genetic diversity and functional constraint of miRNA genes participating pollen-pistil interaction in rice. PMID:28735504
Assessment of isomiR Discrimination Using Commercial qPCR Methods. PMID:28730153
Novel small RNA spike-in oligonucleotides enable absolute normalization of small RNA-Seq data. PMID:28724941
m6aViewer: software for the detection, analysis, and visualization of N6-methyladenosine peaks from m6A-seq/ME-RIP sequencing data. PMID:28724534
Low active loading of cargo into engineered extracellular vesicles results in inefficient miRNA mimic delivery. PMID:28717424
Genome-wide identification and characterization of circular RNAs by high throughput sequencing in soybean. PMID:28717203
Zika virus alters the microRNA expression profile and elicits an RNAi response in Aedes aegypti mosquitoes. PMID:28715413
Identification of Conserved and Novel MicroRNAs in Blueberry. PMID:28713413
Identification and molecular characterization of a trans-acting small interfering RNA producing locus regulating leaf rust responsive gene expression in wheat (Triticum aestivum L.). PMID:28710588
miRNAs in the alga Chlamydomonas reinhardtii are not phylogenetically conserved and play a limited role in responses to nutrient deprivation. PMID:28710366
Clinical value of integrated-signature miRNAs in esophageal cancer. PMID:28707457
Spatial regulation of monolignol biosynthesis and laccase genes control developmental and stress-related lignin in flax. PMID:28705193
Endurance Exercise Ability in the Horse: A Trait with Complex Polygenic Determinism. PMID:28702049
Bias in recent miRBase annotations potentially associated with RNA quality issues. PMID:28701729
The yeast noncoding RNA interaction network. PMID:28701522
Fish Oil Feeding Modulates the Expression of Hepatic MicroRNAs in a Western-Style Diet-Induced Nonalcoholic Fatty Liver Disease Rat Model. PMID:28691019
An Assessment of Database-Validated microRNA Target Genes in Normal Colonic Mucosa: Implications for Pathway Analysis. PMID:28690395
MicroRNA profiling provides insights into post-transcriptional regulation of gene expression in chickpea root apex under salinity and water deficiency. PMID:28680071
miR‑199a‑3p is involved in the pathogenesis and progression of diabetic neuropathy through downregulation of SerpinE2. PMID:28677735
The Stress-Responding miR-132-3p Shows Evolutionarily Conserved Pathway Interactions. PMID:28667373
Small RNA fragments derived from multiple RNA classes - the missing element of multi-omics characteristics of the hepatitis C virus cell culture model. PMID:28666407
Transcriptional Network Analysis Reveals Drought Resistance Mechanisms of AP2/ERF Transgenic Rice. PMID:28663756
Altered miRNA expression network in locus coeruleus of depressed suicide subjects. PMID:28663595
The MicroRNA390/TAS3 Pathway Mediates Symbiotic Nodulation and Lateral Root Growth. PMID:28663332
Tissue-Specific MicroRNA Expression Patterns in Four Types of Kidney Disease. PMID:28663230
Upregulation of circulating microRNA-134 in adult-onset Still's disease and its use as potential biomarker. PMID:28646209
Towards a Consistent, Quantitative Evaluation of MicroRNA Evolution. PMID:28637930
Systematic Prediction of the Impacts of Mutations in MicroRNA Seed Sequences. PMID:28637929
Evolution of miRNA Tailing by 3' Terminal Uridylyl Transferases in Metazoa. PMID:28633361
Temperature-responsive miRNAs in Drosophila orchestrate adaptation to different ambient temperatures. PMID:28630141
Broad-Spectrum Inhibition of Respiratory Virus Infection by MicroRNA Mimics Targeting p38 MAPK Signaling. PMID:28624201
IpiRId: Integrative approach for piRNA prediction using genomic and epigenomic data. PMID:28622364
A Distinct Inhibitory Function for miR-18a in Th17 Cell Differentiation. PMID:28607111
BioM2MetDisease: a manually curated database for associations between microRNAs, metabolites, small molecules and metabolic diseases. PMID:28605773
CHOmine: an integrated data warehouse for CHO systems biology and modeling. PMID:28605771
Identification of Salt Tolerance-related microRNAs and Their Targets in Maize (Zea mays L.) Using High-throughput Sequencing and Degradome Analysis. PMID:28603532
Mechanistic roles of microRNAs in hepatocarcinogenesis: A study of thioacetamide with multiple doses and time-points of rats. PMID:28596526
Cross-Kingdom Regulation of Putative miRNAs Derived from Happy Tree in Cancer Pathway: A Systems Biology Approach. PMID:28587194
Differential expression of microRNAs and their possible roles in patients with chronic idiopathic urticaria and active hives. PMID:28583230
JNSViewer-A JavaScript-based Nucleotide Sequence Viewer for DNA/RNA secondary structures. PMID:28582416
Genome-wide profiling of Sus scrofa circular RNAs across nine organs and three developmental stages. PMID:28575165
Colorectal Cancer: From the Genetic Model to Posttranscriptional Regulation by Noncoding RNAs. PMID:28573140
Pulmonary microRNA profiling: implications in upper lobe predominant lung disease. PMID:28572860
Molecular mechanisms in microRNA-mediated TRB3 gene and hypertension left ventricular hypertrophy. PMID:28565784
Small RNA sequencing for secondary metabolite analysis in Persicaria minor. PMID:28560169
Small RNA-seq analysis in response to methyl jasmonate and abscisic acid treatment in Persicaria minor. PMID:28560166
Profile and functional analysis of small RNAs derived from Aspergillus fumigatus infected with double-stranded RNA mycoviruses. PMID:28558690
MiR529a modulates panicle architecture through regulating SQUAMOSA PROMOTER BINDING-LIKE genes in rice (Oryza sativa). PMID:28551765
Expression profile of Epstein-Barr virus and human adenovirus small RNAs in tonsillar B and T lymphocytes. PMID:28542273
MiR-277/4989 regulate transcriptional landscape during juvenile to adult transition in the parasitic helminth Schistosoma mansoni. PMID:28542189
Radiosensitization effect of hsa-miR-138-2-3p on human laryngeal cancer stem cells. PMID:28533948
MicroRNAs 146a/b-5 and 425-3p and 24-3p are markers of antidepressant response and regulate MAPK/Wnt-system genes. PMID:28530238
Cancer-derived Circulating MicroRNAs Promote Tumor Angiogenesis by Entering Dendritic Cells to Degrade Highly Complementary MicroRNAs. PMID:28529626
Dehydration stress extends mRNA 3' untranslated regions with noncoding RNA functions in Arabidopsis. PMID:28522613
Transcriptome Profiling of Wheat Inflorescence Development from Spikelet Initiation to Floral Patterning Identified Stage-Specific Regulatory Genes. PMID:28515146
De novo Transcriptome Profiling of Flowers, Flower Pedicels and Pods of Lupinus luteus (Yellow Lupine) Reveals Complex Expression Changes during Organ Abscission. PMID:28512462
Genome-wide characterization and expression analyses of superoxide dismutase (SOD) genes in Gossypium hirsutum. PMID:28499417
The Effect of Different Pollination on the Expression of Dangshan Su Pear MicroRNA. PMID:28497043
Sequencing of small RNAs of the fern Pleopeltis minima (Polypodiaceae) offers insight into the evolution of the microrna repertoire in land plants. PMID:28494025
Genome-Wide Identification, Characterization, and Expression Analysis of Small RNA Biogenesis Purveyors Reveal Their Role in Regulation of Biotic Stress Responses in Three Legume Crops. PMID:28487701
Differential microRNA expression in cultured palatal fibroblasts from infants with cleft palate and controls. PMID:28486694
The Role of HCMV and HIV-1 MicroRNAs: Processing, and Mechanisms of Action during Viral Infection. PMID:28484438
Small RNA and Transcriptome Sequencing Reveal a Potential miRNA-Mediated Interaction Network That Functions during Somatic Embryogenesis in Lilium pumilum DC. Fisch. PMID:28473835
Exploring genetic associations with ceRNA regulation in the human genome. PMID:28472449
Pervasive Behavioral Effects of MicroRNA Regulation in Drosophila. PMID:28468905
Systems biology study of transcriptional and post-transcriptional co-regulatory network sheds light on key regulators involved in important biological processes in Citrus sinensis. PMID:28461722
Small RNA sequencing reveals metastasis-related microRNAs in lung adenocarcinoma. PMID:28460486
Identification of active miRNA promoters from nuclear run-on RNA sequencing. PMID:28460090
GmDREB1 overexpression affects the expression of microRNAs in GM wheat seeds. PMID:28459812
Reciprocal regulation between microRNAs and epigenetic machinery in colorectal cancer. PMID:28454212
Differential processing of small RNAs during endoplasmic reticulum stress. PMID:28452371
Significant changes in circulating microRNA by dietary supplementation of selenium and coenzyme Q10 in healthy elderly males. A subgroup analysis of a prospective randomized double-blind placebo-controlled trial among elderly Swedish citizens. PMID:28448590
MicroRNA and Transcription Factor: Key Players in Plant Regulatory Network. PMID:28446918
Non-small cell lung cancer associated microRNA expression signature: integrated bioinformatics analysis, validation and clinical significance. PMID:28445945
High-purity circular RNA isolation method (RPAD) reveals vast collection of intronic circRNAs. PMID:28444238
Identification of MicroRNA Targets of Capsicum spp. Using MiRTrans-a Trans-Omics Approach. PMID:28443105
Circulating MicroRNAs in Delayed Cerebral Infarction After Aneurysmal Subarachnoid Hemorrhage. PMID:28442458
Emerging roles for ncRNAs in alcohol use disorders. PMID:28438526
A Macrocyclic Peptide Ligand Binds the Oncogenic MicroRNA-21 Precursor and Suppresses Dicer Processing. PMID:28437065
A microRNA-mRNA expression network during oral siphon regeneration in Ciona. PMID:28432214
Genome-wide survey of miRNAs and their evolutionary history in the ascidian, Halocynthia roretzi. PMID:28427349
Identification and Characterization of microRNA319a and Its Putative Target Gene, PvPCF5, in the Bioenergy Grass Switchgrass (Panicum virgatum). PMID:28424710
Identification and characterization of L1-specific endo-siRNAs essential for early embryonic development in pig. PMID:28423565
Sexual Dimorphism of miRNAs Secreted by Bovine In vitro-produced Embryos. PMID:28421107
MicroRNAs in Palatogenesis and Cleft Palate. PMID:28420997
MicroRNAs of the mir-17~92 cluster regulate multiple aspects of pancreatic tumor development and progression. PMID:28415794
Systematic characterization of A-to-I RNA editing hotspots in microRNAs across human cancers. PMID:28411194
Highly accessible AU-rich regions in 3' untranslated regions are hotspots for binding of regulatory factors. PMID:28410363
miRCat2: accurate prediction of plant and animal microRNAs from next-generation sequencing datasets. PMID:28407097
Identification of Drought-Responsive MicroRNAs from Roots and Leaves of Alfalfa by High-Throughput Sequencing. PMID:28406444
A role for miR-19 in the migration of adult-born neurons and schizophrenia. PMID:28405585
MiRNA profiling of gastrointestinal stromal tumors by next-generation sequencing. PMID:28402935
Epigenetic Regulations in Diabetic Nephropathy. PMID:28401169
In silico MCMV Silencing Concludes Potential Host-Derived miRNAs in Maize. PMID:28400775
Human and Epstein-Barr Virus miRNA Profiling as Predictive Biomarkers for Endemic Burkitt Lymphoma. PMID:28400759
DES-ncRNA: A knowledgebase for exploring information about human micro and long noncoding RNAs based on literature-mining. PMID:28387604
Novel miRNA-mRNA interactions conserved in essential cancer pathways. PMID:28387377
Comparative study of joint bioinformatics analysis of underlying potential of 'neurimmiR', miR-212-3P/miR-132-3P, being involved in epilepsy and its emerging role in human cancer. PMID:28380454
Genome-wide analysis of microRNA targeting impacted by SNPs in cucumber genome. PMID:28376783
Role and Regulation of MicroRNAs in Aldosterone-Mediated Cardiac Injury and Dysfunction in Male Rats. PMID:28368454
A Comprehensive NGS Data Analysis of Differentially Regulated miRNAs, piRNAs, lncRNAs and sn/snoRNAs in Triple Negative Breast Cancer. PMID:28367238
Ensembl core software resources: storage and programmatic access for DNA sequence and genome annotation. PMID:28365736
Plant miRNAs found in human circulating system provide evidences of cross kingdom RNAi. PMID:28361700
Small Luggage for a Long Journey: Transfer of Vesicle-Enclosed Small RNA in Interspecies Communication. PMID:28360889
3' Uridylation controls mature microRNA turnover during CD4 T-cell activation. PMID:28351886
Oxygen tension regulates the miRNA profile and bioactivity of exosomes released from extravillous trophoblast cells - Liquid biopsies for monitoring complications of pregnancy. PMID:28350871
Molecular, phenotypic, and sample-associated data to describe pluripotent stem cell lines and derivatives. PMID:28350385
Exploration of small RNA-seq data for small non-coding RNAs in Human Colorectal Cancer. PMID:28348640
Cross disease analysis of co-functional microRNA pairs on a reconstructed network of disease-gene-microRNA tripartite. PMID:28340554
let-7 regulates radial migration of new-born neurons through positive regulation of autophagy. PMID:28336683
High-throughput sequencing of pituitary and hypothalamic microRNA transcriptome associated with high rate of egg production. PMID:28335741
Comprehensive Transcriptome Analyses Reveal that Potato Spindle Tuber Viroid Triggers Genome-Wide Changes in Alternative Splicing, Inducible trans-Acting Activity of Phased Secondary Small Interfering RNAs, and Immune Responses. PMID:28331096
Identification and characterization of durum wheat microRNAs in leaf and root tissues. PMID:28321518
QuickMIRSeq: a pipeline for quick and accurate quantification of both known miRNAs and isomiRs by jointly processing multiple samples from microRNA sequencing. PMID:28320324
Identification and Expression of Equine MER-Derived miRNAs. PMID:28320202
Identification and comparative profiling of miRNAs in herbaceous peony (Paeonia lactiflora Pall.) with red/yellow bicoloured flowers. PMID:28317945
Disruption of the Cx43/miR21 pathway leads to osteocyte apoptosis and increased osteoclastogenesis with aging. PMID:28317237
The Non-Coding Transcriptome of Prostate Cancer: Implications for Clinical Practice. PMID:28299719
Unveiling Another Missing Piece in EBV-Driven Lymphomagenesis: EBV-Encoded MicroRNAs Expression in EBER-Negative Burkitt Lymphoma Cases. PMID:28298901
Identification and characterization of microRNAs in the muscle of Schizothorax prenanti. PMID:28293861
The pivotal role of small non-coding RNAs in the regulation of seed development. PMID:28289886
Microarray profiling of circular RNAs in human papillary thyroid carcinoma. PMID:28288173
MicroRNA-based Regulation of Picornavirus Tropism. PMID:28287517
PLK1-associated microRNAs are correlated with pediatric medulloblastoma prognosis. PMID:28283778
Bioinformatics Study of Structural Patterns in Plant MicroRNA Precursors. PMID:28280737
Identification and characterization of differentially expressed miRNAs in subcutaneous adipose between Wagyu and Holstein cattle. PMID:28272430
Combination of Interleukin-27 and MicroRNA for Enhancing Expression of Anti-Inflammatory and Proosteogenic Genes. PMID:28265470
Tumor Cell-Derived Microvesicles Induced Not Epithelial-Mesenchymal Transition but Apoptosis in Human Proximal Tubular (HK-2) Cells: Implications for Renal Impairment in Multiple Myeloma. PMID:28264449
Extracting microRNA-gene relations from biomedical literature using distant supervision. PMID:28263989
miRNA engineering of CHO cells facilitates production of difficult-to-express proteins and increases success in cell line development. PMID:28262952
Dynamics of miRNA transcriptome during gonadal development of zebrafish. PMID:28262836
Circulating microRNAs as Potential Biomarkers of Infectious Disease. PMID:28261201
Mutation in cpsf6/CFIm68 (Cleavage and Polyadenylation Specificity Factor Subunit 6) causes short 3'UTRs and disturbs gene expression in developing embryos, as revealed by an analysis of primordial germ cell migration using the medaka mutant naruto. PMID:28253363
Noncoding Effects of Circular RNA CCDC66 Promote Colon Cancer Growth and Metastasis. PMID:28249903
The Accumulation of miRNAs Differentially Modulated by Drought Stress Is Affected by Grafting in Grapevine. PMID:28235889
Can milk cell or skim milk miRNAs be used as biomarkers for early pregnancy detection in cattle? PMID:28234939
Comprehensive analysis of long non-coding RNAs highlights their spatio-temporal expression patterns and evolutional conservation in Sus scrofa. PMID:28233874
MicroRNAs as Master Regulators of Glomerular Function in Health and Disease. PMID:28232619
The miRNAome of Catharanthus roseus: identification, expression analysis, and potential roles of microRNAs in regulation of terpenoid indole alkaloid biosynthesis. PMID:28223695
Transcriptome-wide microRNA and target dynamics in the fat body during the gonadotrophic cycle of Aedes aegypti. PMID:28223504
Coordination of Myeloid Differentiation with Reduced Cell Cycle Progression by PU.1 Induction of MicroRNAs Targeting Cell Cycle Regulators and Lipid Anabolism. PMID:28223367
Deep Illumina sequencing reveals conserved and novel microRNAs in grass carp in response to grass carp reovirus infection. PMID:28219339
Stress-responsive pathways and small RNA changes distinguish variable developmental phenotypes caused by MSH1 loss. PMID:28219335
Profound changes in miRNA expression during cancer initiation by aflatoxin B1 and their abrogation by the chemopreventive triterpenoid CDDO-Im. PMID:28218475
Use of Mature miRNA Strand Selection in miRNAs Families in Cervical Cancer Development. PMID:28216603
Unraveling the microRNA of Caragana korshinskii along a precipitation gradient on the Loess Plateau, China, using high-throughput sequencing. PMID:28207805
Defining age- and lactocrine-sensitive elements of the neonatal porcine uterine microRNA-mRNA interactome. PMID:28203709
Exo-miRExplorer: A Comprehensive Resource for Exploring and Comparatively Analyzing Exogenous MicroRNAs. PMID:28203233
Mapping circulating serum miRNAs to their immune-related target mRNAs. PMID:28203094
The landscape of extreme genomic variation in the highly adaptable Atlantic killifish. PMID:28201664
MicroRNA miR-29 controls a compensatory response to limit neuronal iron accumulation during adult life and aging. PMID:28193224
Characterizing isomiR variants within the microRNA-34/449 family. PMID:28192603
A Comprehensive Prescription for Plant miRNA Identification. PMID:28174574
Identifying survival-associated modules from the dysregulated triplet network in glioblastoma multiforme. PMID:28168356
Grouping miRNAs of similar functions via weighted information content of gene ontology. PMID:28155659
microRNA target prediction programs predict many false positives. PMID:28148562
Exploiting microRNAs As Cancer Therapeutics. PMID:28138797
Serum microRNA miR-501-3p as a potential biomarker related to the progression of Alzheimer's disease. PMID:28137310
MicroRNA and mRNA Transcriptome Profiling in Primary Human Astrocytes Infected with Borrelia burgdorferi. PMID:28135303
An approach to forecast human cancer by profiling microRNA expressions from NGS data. PMID:28122525
Transcriptome-Wide Identification and Prediction of miRNAs and Their Targets in Paris polyphylla var. yunnanensis by High-Throughput Sequencing Analysis. PMID:28117746
Roles of MIWI, MILI and PLD6 in small RNA regulation in mouse growing oocytes. PMID:28115634
Distribution and differential expression of microRNAs in the intestinal mucosal layer of necrotic enteritis induced Fayoumi chickens. PMID:28111433
From benchmarking HITS-CLIP peak detection programs to a new method for identification of miRNA-binding sites from Ago2-CLIP data. PMID:28108660
miRmine: a database of human miRNA expression profiles. PMID:28108447
Anti-NMDA Receptor Encephalitis and Vaccination. PMID:28106787
Mirnacle: machine learning with SMOTE and random forest for improving selectivity in pre-miRNA ab initio prediction. PMID:28105918
Deregulated Cardiac Specific MicroRNAs in Postnatal Heart Growth. PMID:28105427
MicroRNA expression patterns and signalling pathways in the development and progression of childhood solid tumours. PMID:28103887
Contextual Refinement of Regulatory Targets Reveals Effects on Breast Cancer Prognosis of the Regulome. PMID:28103241
Induced Packaging of Cellular MicroRNAs into HIV-1 Virions Can Inhibit Infectivity. PMID:28096489
Nutrition, microRNAs, and Human Health. PMID:28096131
Diet, gonadal sex, and sex chromosome complement influence white adipose tissue miRNA expression. PMID:28095800
Novel determinants of mammalian primary microRNA processing revealed by systematic evaluation of hairpin-containing transcripts and human genetic variation. PMID:28087842
MicroRNA-432 targeting E2F3 and P55PIK inhibits myogenesis through PI3K/AKT/mTOR signaling pathway. PMID:28085550
MicroRNAs and tRNA-derived fragments predict the transformation of myelodysplastic syndromes to acute myeloid leukemia. PMID:28084850
KTCNlncDB-a first platform to investigate lncRNAs expressed in human keratoconus and non-keratoconus corneas. PMID:28077570
RAIN: RNA-protein Association and Interaction Networks. PMID:28077569
Gene co-expression analysis for functional classification and gene-disease predictions. PMID:28077403
miRDis: a Web tool for endogenous and exogenous microRNA discovery based on deep-sequencing data analysis. PMID:28073746
Origin and evolution of MIR1444 genes in Salicaceae. PMID:28071760
Plant genome and transcriptome annotations: from misconceptions to simple solutions. PMID:28062412
ccNET: Database of co-expression networks with functional modules for diploid and polyploid Gossypium. PMID:28053168
PceRBase: a database of plant competing endogenous RNA. PMID:28053167
POSTAR: a platform for exploring post-transcriptional regulation coordinated by RNA-binding proteins. PMID:28053162
The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes. PMID:28053160
Integrated genomic characterization of oesophageal carcinoma. PMID:28052061
Identification of small RNAs in extracellular vesicles from the commensal yeast Malassezia sympodialis. PMID:28051166
Modulation of microRNA-mRNA Target Pairs by Human Papillomavirus 16 Oncoproteins. PMID:28049151
Response of MiRNA-22-3p and MiRNA-149-5p to Folate Deficiency and the Differential Regulation of MTHFR Expression in Normal and Cancerous Human Hepatocytes. PMID:28045918
Novel Biomarker MicroRNAs for Subtyping of Acute Coronary Syndrome: A Bioinformatics Approach. PMID:28044128
In silico identification and in vivo validation of miR-495 as a novel regulator of motivation for cocaine that targets multiple addiction-related networks in the nucleus accumbens. PMID:28044061
Non-Coding RNAs in Lung Cancer: Contribution of Bioinformatics Analysis to the Development of Non-Invasive Diagnostic Tools. PMID:28035947
Plant MicroRNAs-Novel Players in Natural Medicine? PMID:28025496
RiceATM: a platform for identifying the association between rice agronomic traits and miRNA expression. PMID:28025342
Genome sequence and genetic diversity of European ash trees. PMID:28024298
Identification of miRNAs Affecting the Establishment of Brassica Alboglabra Seedling. PMID:28018366
Deep sequencing of wheat sRNA transcriptome reveals distinct temporal expression pattern of miRNAs in response to heat, light and UV. PMID:28004741
Integrated Strategy Improves the Prediction Accuracy of miRNA in Large Dataset. PMID:28002428
A microRNA negative feedback loop downregulates vesicle transport and inhibits fear memory. PMID:28001126
Dysregulated MicroRNA Expression Profiles and Potential Cellular, Circulating and Polymorphic Biomarkers in Non-Hodgkin Lymphoma. PMID:27999330
A comprehensive benchmark of RNA-RNA interaction prediction tools for all domains of life. PMID:27993777
Site-Dependent Differences in DNA Methylation and Their Impact on Plant Establishment and Phosphorus Nutrition in Populus trichocarpa. PMID:27992519
Dynamic landscape of alternative polyadenylation during retinal development. PMID:27990575
New Cross-Talk Layer between Ultraconserved Non-Coding RNAs, MicroRNAs and Polycomb Protein YY1 in Bladder Cancer. PMID:27983635
Time Series miRNA-mRNA integrated analysis reveals critical miRNAs and targets in macrophage polarization. PMID:27981970
Knockout of miR-221 and miR-222 reveals common and specific targets for paralogous miRNAs. PMID:27981894
Transcriptome profiling of the developing male germ line identifies the miR-29 family as a global regulator during meiosis. PMID:27981880
A Dormant Microbial Component in the Development of Preeclampsia. PMID:27965958
Insights into psychosis risk from leukocyte microRNA expression. PMID:27959328
Downstream mRNA Target Analysis in Neonatal Hypoxic-Ischaemic Encephalopathy Identifies Novel Marker of Severe Injury: a Proof of Concept Paper. PMID:27957679
Cancer-derived exosomic microRNAs shape the immune system within the tumor microenvironment: State of the art. PMID:27956165
Tools for Sequence-Based miRNA Target Prediction: What to Choose? PMID:27941681
Molecular Evolution of PTEN Pseudogenes in Mammals. PMID:27936183
Small RNAs from Bemisia tabaci Are Transferred to Solanum lycopersicum Phloem during Feeding. PMID:27933079
Comparison of Small RNA Profiles of Glycine max and Glycine soja at Early Developmental Stages. PMID:27929436
Acfs: accurate circRNA identification and quantification from RNA-Seq data. PMID:27929140
Evolutionary patterns of metazoan microRNAs reveal targeting principles in the let-7 and miR-10 families. PMID:27927717
Differential Expression and Functional Analysis of High-Throughput -Omics Data Using Open Source Tools. PMID:27924603
Computational analysis reveals microRNA-mRNA regulatory network in esophageal squamous cell carcinoma. PMID:27924512
ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data. PMID:27924033
Differentially expressed miRNAs in oxygen‑induced retinopathy newborn mouse models. PMID:27922698
Biomarker MicroRNAs for Diagnosis, Prognosis and Treatment of Hepatocellular Carcinoma: A Functional Survey and Comparison. PMID:27917899
Role of MicroRNA in the Lung's Innate Immune Response. PMID:27915347
miRTar2GO: a novel rule-based model learning method for cell line specific microRNA target prediction that integrates Ago2 CLIP-Seq and validated microRNA-target interaction data. PMID:27903911
Joint Profiling of miRNAs and mRNAs Reveals miRNA Mediated Gene Regulation in the Göttingen Minipig Obesity Model. PMID:27902747
YM500v3: a database for small RNA sequencing in human cancer research. PMID:27899625
NSDNA: a manually curated database of experimentally supported ncRNAs associated with nervous system diseases. PMID:27899613
dbDEMC 2.0: updated database of differentially expressed miRNAs in human cancers. PMID:27899556
miRNAs differentially expressed by next-generation sequencing in cord blood buffy coat samples of boys and girls. PMID:27882772
MicroRNAs in Coronary Heart Disease: Ready to Enter the Clinical Arena? PMID:27882321
The genome, transcriptome, and proteome of the nematode Steinernema carpocapsae: evolutionary signatures of a pathogenic lifestyle. PMID:27876851
Small RNA Library Preparation Method for Next-Generation Sequencing Using Chemical Modifications to Prevent Adapter Dimer Formation. PMID:27875576
Identification of urinary exosomal noncoding RNAs as novel biomarkers in chronic kidney disease. PMID:27872161
A microRNA biomarker panel for the non-invasive detection of bladder cancer. PMID:27863434
A human microRNA precursor binding to folic acid discovered by small RNA transcriptomic SELEX. PMID:27852928
Systems analysis identifies miR-29b regulation of invasiveness in melanoma. PMID:27852308
The caste- and sex-specific DNA methylome of the termite Zootermopsis nevadensis. PMID:27848993
Identification and characterization of microRNAs in Humulus lupulus using high-throughput sequencing and their response to Citrus bark cracking viroid (CBCVd) infection. PMID:27846797
Immediate-early alcohol-responsive miRNA expression in Drosophila. PMID:27845601
Partial reconstitution of the RNAi response in human cells using Drosophila gene products. PMID:27837013
Blood miRNomes and transcriptomes reveal novel longevity mechanisms in the long-lived bat, Myotis myotis. PMID:27832764
Identification of microRNAs Actively Involved in Fatty Acid Biosynthesis in Developing Brassica napus Seeds Using High-Throughput Sequencing. PMID:27822220
Investigating the mechanism of hepatocellular carcinoma progression by constructing genetic and epigenetic networks using NGS data identification and big database mining method. PMID:27821810
MicroRNAs in the Host Response to Viral Infections of Veterinary Importance. PMID:27800484
Assessing the Gene Content of the Megagenome: Sugar Pine (Pinus lambertiana). PMID:27799338
Small RNA Sequencing in Cells and Exosomes Identifies eQTLs and 14q32 as a Region of Active Export. PMID:27799337
Identification and Expression Profiling of miRNAome in Goat longissimus dorsi Muscle from Prenatal Stages to a Neonatal Stage. PMID:27798673
miRNA92a targets KLF2 and the phosphatase PTEN signaling to promote human T follicular helper precursors in T1D islet autoimmunity. PMID:27791035
Mammalian microRNA: an important modulator of host-pathogen interactions in human viral infections. PMID:27784307
Circulating MicroRNAs as Potential Biomarkers of Exercise Response. PMID:27782053
The state of play in higher eukaryote gene annotation. PMID:27773922
Significant role for microRNA-21 affecting toll-like receptor pathway in primary graft dysfunction after human lung transplantation. PMID:27773452
Determining the Roles of Inositol Trisphosphate Receptors in Neurodegeneration: Interdisciplinary Perspectives on a Complex Topic. PMID:27771899
MicroRNA-like viral small RNA from porcine reproductive and respiratory syndrome virus negatively regulates viral replication by targeting the viral nonstructural protein 2. PMID:27769040
Future of environmental research in the age of epigenomics and exposomics. PMID:27768585
Prioritization, clustering and functional annotation of MicroRNAs using latent semantic indexing of MEDLINE abstracts. PMID:27766940
Comparative profiling of microRNAs in the winged and wingless English grain aphid, Sitobion avenae (F.) (Homoptera: Aphididae). PMID:27762301
The Influence of Genotype and Environment on Small RNA Profiles in Grapevine Berry. PMID:27761135
HSV1 MicroRNA Modulation of GPI Anchoring and Downstream Immune Evasion. PMID:27760325
RNAdualPF: software to compute the dual partition function with sample applications in molecular evolution theory. PMID:27756204
A Developmental Transcriptome Map for Allotetraploid Arachis hypogaea. PMID:27746793
miRPathDB: a new dictionary on microRNAs and target pathways. PMID:27742822
Post-Transcriptional Regulation of Toll-Interacting Protein in the Intestinal Epithelium. PMID:27741296
Onco-GPCR signaling and dysregulated expression of microRNAs in human cancer. PMID:27734836
microRNAs differentially modulated in response to heat and drought stress in durum wheat cultivars with contrasting water use efficiency. PMID:27734229
MiRNA-221-3p desensitizes pancreatic cancer cells to 5-fluorouracil by targeting RB1. PMID:27726102
Discovering MicroRNA-Regulatory Modules in Multi-Dimensional Cancer Genomic Data: A Survey of Computational Methods. PMID:27721651
Generation of an integrated Hieracium genomic and transcriptomic resource enables exploration of small RNA pathways during apomixis initiation. PMID:27716180
Novel microRNA discovery using small RNA sequencing in post-mortem human brain. PMID:27716130
miR-203 is a predictive biomarker for colorectal cancer and its expression is associated with BIRC5. PMID:27714672
Gene Overexpression Resources in Cereals for Functional Genomics and Discovery of Useful Genes. PMID:27708649
MicroRNA-34/449 controls mitotic spindle orientation during mammalian cortex development. PMID:27707753
Lateralization of gene expression in the honeybee brain during olfactory learning. PMID:27703214
Dynamic changes of small RNAs in rice spikelet development reveal specialized reproductive phasiRNA pathways. PMID:27702997
Rapid Functional and Sequence Differentiation of a Tandemly Repeated Species-Specific Multigene Family in Drosophila. PMID:27702774
Uncovering leaf rust responsive miRNAs in wheat (Triticum aestivum L.) using high-throughput sequencing and prediction of their targets through degradome analysis. PMID:27699487
Deep sequencing reveals microRNAs predictive of antiangiogenic drug response. PMID:27699216
Microarray analysis reveals altered circulating microRNA expression in mice infected with Coxsackievirus B3. PMID:27698715
Identification of drought-responsive microRNAs and their targets in Ammopiptanthus mongolicus by using high-throughput sequencing. PMID:27698373
Dissecting the regulation rules of cancer-related miRNAs based on network analysis. PMID:27694936
Epstein-Barr virus: more than 50 years old and still providing surprises. PMID:27687982
Multi-perspective quality control of Illumina RNA sequencing data analysis. PMID:27687708
Comprehensive analysis of microRNA signature of mouse pancreatic acini: overexpression of miR-21-3p in acute pancreatitis. PMID:27686613
Integrated RNA-seq and sRNA-seq analysis reveals miRNA effects on secondary metabolism in Solanum tuberosum L. PMID:27679507
Sex-Biased Transcriptome of Schistosoma mansoni: Host-Parasite Interaction, Genetic Determinants and Epigenetic Regulators Are Associated with Sexual Differentiation. PMID:27677173
STarMir Tools for Prediction of microRNA Binding Sites. PMID:27665594
Template-Based Modeling of Protein-RNA Interactions. PMID:27662342
LNCediting: a database for functional effects of RNA editing in lncRNAs. PMID:27651464
Urea Transporter B and MicroRNA-200c Differ in Kidney Outer Versus Inner Medulla Following Dehydration. PMID:27650235
TUT-DIS3L2 is a mammalian surveillance pathway for aberrant structured non-coding RNAs. PMID:27647875
The miR-33 gene is identified in a marine teleost: a potential role in regulation of LC-PUFA biosynthesis in Siganus canaliculatus. PMID:27640649
Genome-wide identification and characterisation of HOT regions in the human genome. PMID:27633377
Post-transcriptional Regulation of BRCA2 through Interactions with miR-19a and miR-19b. PMID:27630665
SpermBase: A Database for Sperm-Borne RNA Contents. PMID:27628216
Rapid Evolutionary Rates and Unique Genomic Signatures Discovered in the First Reference Genome for the Southern Ocean Salp, Salpa thompsoni (Urochordata, Thaliacea). PMID:27624472
BmncRNAdb: a comprehensive database of non-coding RNAs in the silkworm, Bombyx mori. PMID:27623959
Large-Scale microRNA Expression Profiling Identifies Putative Retinal miRNA-mRNA Signaling Pathways Underlying Form-Deprivation Myopia in Mice. PMID:27622715
Comprehensive Small RNA-Seq of Adeno-Associated Virus (AAV)-Infected Human Cells Detects Patterns of Novel, Non-Coding AAV RNAs in the Absence of Cellular miRNA Regulation. PMID:27611072
Genomic identification, characterization and differential expression analysis of SBP-box gene family in Brassica napus. PMID:27608922
SMEpred workbench: A web server for predicting efficacy of chemicallymodified siRNAs. PMID:27603513
Genomic-Wide Analysis with Microarrays in Human Oncology. PMID:27600234
Genome-wide association study of positive emotion identifies a genetic variant and a role for microRNAs. PMID:27595594
miR-155 functions downstream of angiotensin II receptor subtype 1 and calcineurin to regulate cardiac hypertrophy. PMID:27588076
Alu-miRNA interactions modulate transcript isoform diversity in stress response and reveal signatures of positive selection. PMID:27586304
Genome-Wide Analysis of MicroRNA Responses to the Phytohormone Abscisic Acid in Populus euphratica. PMID:27582743
The roles of microRNAs and siRNAs in mammalian spermatogenesis. PMID:27578177
Cross-species identification of genomic drivers of squamous cell carcinoma development across preneoplastic intermediates. PMID:27574101
Next-generation sequencing reveals broad down-regulation of microRNAs in secondary progressive multiple sclerosis CD4+ T cells. PMID:27570566
IGF-1 deficiency in a critical period early in life influences the vascular aging phenotype in mice by altering miRNA-mediated post-transcriptional gene regulation: implications for the developmental origins of health and disease hypothesis. PMID:27566308
Epstein-Barr viral microRNAs target caspase 3. PMID:27565721
Influence of gestational diabetes mellitus on human umbilical vein endothelial cell miRNA. PMID:27562513
Can baseline serum microRNAs predict response to TNF-alpha inhibitors in rheumatoid arthritis? PMID:27558398
Identification of Ice Plant (Mesembryanthemum crystallinum L.) MicroRNAs Using RNA-Seq and Their Putative Roles in High Salinity Responses in Seedlings. PMID:27555850
High-fat diet disrupts metabolism in two generations of rats in a parent-of-origin specific manner. PMID:27550193
MicroRNAs in heart failure: Non-coding regulators of metabolic function. PMID:27544699
Resolvin E1 Reverses Experimental Periodontitis and Dysbiosis. PMID:27543615
RNALocate: a resource for RNA subcellular localizations. PMID:27543076
Biomarkers of β-Cell Stress and Death in Type 1 Diabetes. PMID:27541297
Genetics and Epigenetics of Diabetic Nephropathy. PMID:27536664
Association Studies in Populus tomentosa Reveal the Genetic Interactions of Pto-MIR156c and Its Targets in Wood Formation. PMID:27536313
Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63. PMID:27535938
The beagle dog MicroRNA tissue atlas: identifying translatable biomarkers of organ toxicity. PMID:27535741
Comprehensive profiling of functional Epstein-Barr virus miRNA expression in human cell lines. PMID:27531524
Extracellular RNA in aging. PMID:27531497
Systematic Review of Micro-RNA Expression in Pre-Eclampsia Identifies a Number of Common Pathways Associated with the Disease. PMID:27529341
microRNA regulatory circuits in a mouse model of inherited retinal degeneration. PMID:27527066
Human Ribosomal RNA-Derived Resident MicroRNAs as the Transmitter of Information upon the Cytoplasmic Cancer Stress. PMID:27517048
Regulatory non-coding RNA: new instruments in the orchestration of cell death. PMID:27512954
The Diversification of Plant NBS-LRR Defense Genes Directs the Evolution of MicroRNAs That Target Them. PMID:27512116
Identification of extracellular miRNA in archived serum samples by next-generation sequencing from RNA extracted using multiple methods. PMID:27510798
MiR-153 promotes breast cancer cell apoptosis by targeting HECTD3. PMID:27508098
High-throughput sequencing and degradome analysis reveal altered expression of miRNAs and their targets in a male-sterile cybrid pummelo (Citrus grandis). PMID:27506907
Genetics of Male Infertility. PMID:27502429
Transcriptome profiling of drought responsive noncoding RNAs and their target genes in rice. PMID:27501838
The regulation roles of miR-125b, miR-221 and miR-27b in porcine Salmonella infection signalling pathway. PMID:27474500
RNA-binding protein HuR and the members of the miR-200 family play an unconventional role in the regulation of c-Jun mRNA. PMID:27473170
MicroRNA expression and gene regulation drive breast cancer progression and metastasis in PyMT mice. PMID:27449149
Who Watches the Watchmen: Roles of RNA Modifications in the RNA Interference Pathway. PMID:27441695
Identification and Classification of New Transcripts in Dorper and Small-Tailed Han Sheep Skeletal Muscle Transcriptomes. PMID:27434270
DICER governs characteristics of glioma stem cells and the resulting tumors in xenograft mouse models of glioblastoma. PMID:27421140
Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle. PMID:27412606
The miR-644a/CTBP1/p53 axis suppresses drug resistance by simultaneous inhibition of cell survival and epithelial-mesenchymal transition in breast cancer. PMID:27409664
Function and regulation of microRNA-31 in development and disease. PMID:27405090
An invertebrate-specific and immune-responsive microRNA augments oyster haemocyte phagocytosis by targeting CgIκB2. PMID:27404434
Pharmacomodulation of microRNA Expression in Neurocognitive Diseases: Obstacles and Future Opportunities. PMID:27397479
Identification of microRNA biomarker candidates in urine and plasma from rats with kidney or liver damage. PMID:27397436
NeuroRDF: semantic integration of highly curated data to prioritize biomarker candidates in Alzheimer's disease. PMID:27392431
Illumina Sequencing Reveals Aberrant Expression of MicroRNAs and Their Variants in Whitefish (Coregonus lavaretus) Liver after Exposure to Microcystin-LR. PMID:27391076
Ancestral vinclozolin exposure alters the epigenetic transgenerational inheritance of sperm small noncoding RNAs. PMID:27390623
MicroRNAs As Potential Targets for Abiotic Stress Tolerance in Plants. PMID:27379117
Specific miRNA Disease Biomarkers in Blood, Serum and Plasma: Challenges and Prospects. PMID:27378479
Elastic band resistance training influences transforming growth factor-ß receptor I mRNA expression in peripheral mononuclear cells of institutionalised older adults: the Vienna Active Ageing Study (VAAS). PMID:27375767
Comprehensive analysis of microRNA-Seq and target mRNAs of rice sheath blight pathogen provides new insights into pathogenic regulatory mechanisms. PMID:27374612
Hepatitis C Virus Core Protein Promotes miR-122 Destabilization by Inhibiting GLD-2. PMID:27366906
Transcriptome-wide based identification of miRs in congenital anomalies of the kidney and urinary tract (CAKUT) in children: the significant upregulation of tissue miR-144 expression. PMID:27364533
A Conserved MicroRNA Regulatory Circuit Is Differentially Controlled during Limb/Appendage Regeneration. PMID:27355827
Structural Analysis using SHALiPE to Reveal RNA G-Quadruplex Formation in Human Precursor MicroRNA. PMID:27355429
Comprehensive investigation of aberrant microRNA profiling in bladder cancer tissues. PMID:27350368
A survey of the sorghum transcriptome using single-molecule long reads. PMID:27339290
Network-based identification of microRNAs as potential pharmacogenomic biomarkers for anticancer drugs. PMID:27329603
Genome-wide identification of microRNA-related variants associated with risk of Alzheimer's disease. PMID:27328823
Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum. PMID:27324919
IntNetLncSim: an integrative network analysis method to infer human lncRNA functional similarity. PMID:27323856
Toward reliable biomarker signatures in the age of liquid biopsies - how to standardize the small RNA-Seq workflow. PMID:27317696
Understanding microRNA-mediated gene regulatory networks through mathematical modelling. PMID:27317695
A comprehensive view of the web-resources related to sericulture. PMID:27307138
microRNA editing in seed region aligns with cellular changes in hypoxic conditions. PMID:27298257
Nucleotide specificity of the human terminal nucleotidyltransferase Gld2 (TUT2). PMID:27284165
Evaluation of microRNA alignment techniques. PMID:27284164
MicroRNA-Offset RNA Alters Gene Expression and Cell Proliferation. PMID:27276022
Integrated Analysis of the Roles of Long Noncoding RNA and Coding RNA Expression in Sheep (Ovis aries) Skin during Initiation of Secondary Hair Follicle. PMID:27276011
Post-transcriptional knowledge in pathway analysis increases the accuracy of phenotypes classification. PMID:27275538
Omics databases on kidney disease: where they can be found and how to benefit from them. PMID:27274817
Analysis of the Microprocessor in Dictyostelium: The Role of RbdB, a dsRNA Binding Protein. PMID:27272207
The Role of microRNAs in the Pathogenesis of Herpesvirus Infection. PMID:27271654
Regulation of Small RNAs and Corresponding Targets in Nod Factor-Induced Phaseolus vulgaris Root Hair Cells. PMID:27271618
Bioinformatics resources for pollen. PMID:27271281
Genomic profiling of exogenous abscisic acid-responsive microRNAs in tomato (Solanum lycopersicum). PMID:27260799
Principles of microRNA Regulation Revealed Through Modeling microRNA Expression Quantitative Trait Loci. PMID:27260304
Diagnostic value of microRNAs in asbestos exposure and malignant mesothelioma: systematic review and qualitative meta-analysis. PMID:27259231
Nucleic acid biomarkers of β cell stress and death in type 1 diabetes. PMID:27254268
Comparative Analyses between Skeletal Muscle miRNAomes from Large White and Min Pigs Revealed MicroRNAs Associated with Postnatal Muscle Hypertrophy. PMID:27253583
A Comprehensive Review on the Genetic Regulation of Cisplatin-induced Nephrotoxicity. PMID:27252593
The IL-4/STAT6 signaling axis establishes a conserved microRNA signature in human and mouse macrophages regulating cell survival via miR-342-3p. PMID:27245778
Identification of Rapeseed MicroRNAs Involved in Early Stage Seed Germination under Salt and Drought Stresses. PMID:27242859
Automatic learning of pre-miRNAs from different species. PMID:27233515
Genome-wide identification of microRNAs in pomegranate (Punica granatum L.) by high-throughput sequencing. PMID:27230657
miR-190 Enhances HIF-Dependent Responses to Hypoxia in Drosophila by Inhibiting the Prolyl-4-hydroxylase Fatiga. PMID:27223464
Comparative Profiling of microRNA Expression in Soybean Seeds from Genetically Modified Plants and their Near-Isogenic Parental Lines. PMID:27214227
Predicting MicroRNA Biomarkers for Cancer Using Phylogenetic Tree and Microarray Analysis. PMID:27213352
DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data. PMID:27207881
Genome-wide analysis of single non-templated nucleotides in plant endogenous siRNAs and miRNAs. PMID:27207877
spongeScan: A web for detecting microRNA binding elements in lncRNA sequences. PMID:27198221
Specific down-regulation of spermatogenesis genes targeted by 22G RNAs in hybrid sterile males associated with an X-Chromosome introgression. PMID:27197225
Genome-Wide Analysis of Polycistronic MicroRNAs in Cultivated and Wild Rice. PMID:27190137
Evolutionary Transitions of MicroRNA-Target Pairs. PMID:27189995
microRNAs in the Same Clusters Evolve to Coordinately Regulate Functionally Related Genes. PMID:27189568
Genomic conservation of erythropoietic microRNAs (erythromiRs) in white-blooded Antarctic icefish. PMID:27189439
Improving microRNA target prediction with gene expression profiles. PMID:27189211
The Drosophila Dicer-1 Partner Loquacious Enhances miRNA Processing from Hairpins with Unstable Structures at the Dicing Site. PMID:27184838
Small RNA sequencing and degradome analysis of developing fibers of short fiber mutants Ligon-lintles-1 (Li 1 ) and -2 (Li 2 ) revealed a role for miRNAs and their targets in cotton fiber elongation. PMID:27184029
Improving classification of mature microRNA by solving class imbalance problem. PMID:27181057
tRF2Cancer: A web server to detect tRNA-derived small RNA fragments (tRFs) and their expression in multiple cancers. PMID:27179031
DeAnnIso: a tool for online detection and annotation of isomiRs from small RNA sequencing data. PMID:27179030
Targeting oncomiRNAs and mimicking tumor suppressor miRNAs: Νew trends in the development of miRNA therapeutic strategies in oncology (Review). PMID:27175518
Improved Placement of Multi-mapping Small RNAs. PMID:27175019
Small RNAs and the competing endogenous RNA network in high grade serous ovarian cancer tumor spread. PMID:27172797
MicroRNAs in the Evaluation and Potential Treatment of Liver Diseases. PMID:27171116
Uptake of dietary milk miRNAs by adult humans: a validation study. PMID:27158459
A whole-mount in situ hybridization method for microRNA detection in Caenorhabditis elegans. PMID:27154969
The emerging role of microRNAs in hypoxia-induced pulmonary hypertension. PMID:27154628
Sensitive and specific miRNA detection method using SplintR Ligase. PMID:27154271
RISC-mediated control of selected chromatin regulators stabilizes ground state pluripotency of mouse embryonic stem cells. PMID:27154007
A widespread sequence-specific mRNA decay pathway mediated by hnRNPs A1 and A2/B1. PMID:27151978
Differential expression of conserved and novel microRNAs during tail regeneration in the lizard Anolis carolinensis. PMID:27150582
STarMirDB: A database of microRNA binding sites. PMID:27144897
Identification of miR-34a-target interactions by a combined network based and experimental approach. PMID:27144431
Integrated analysis of miRNA and mRNA expression profiles in tilapia gonads at an early stage of sex differentiation. PMID:27142172
ImiRP: a computational approach to microRNA target site mutation. PMID:27122020
Genome-wide identification of target genes for miR-204 and miR-211 identifies their proliferation stimulatory role in breast cancer cells. PMID:27121770
MiR-210 promotes sensory hair cell formation in the organ of corti. PMID:27121005
An Improved microRNA Annotation of the Canine Genome. PMID:27119849
Altered expression pattern of circular RNAs in primary and metastatic sites of epithelial ovarian carcinoma. PMID:27119352
MicroRNA Target Recognition: Insights from Transcriptome-Wide Non-Canonical Interactions. PMID:27117456
Characterization of piRNAs across postnatal development in mouse brain. PMID:27112104
Mmu-miR-1894-3p Inhibits Cell Proliferation and Migration of Breast Cancer Cells by Targeting Trim46. PMID:27110773
Prognostic microRNA signatures derived from The Cancer Genome Atlas for head and neck squamous cell carcinomas. PMID:27109697
MicroRNA: a connecting road between apoptosis and cholesterol metabolism. PMID:27105614
Functional Implications of Human-Specific Changes in Great Ape microRNAs. PMID:27105073
Long non-coding RNAs harboring miRNA seed regions are enriched in prostate cancer exosomes. PMID:27102850
Urinary Exosomal microRNA-451-5p Is a Potential Early Biomarker of Diabetic Nephropathy in Rats. PMID:27101382
The emerging role of extracellular vesicle-derived miRNAs: implication in cancer progression and stem cell related diseases. PMID:27099870
g:Profiler-a web server for functional interpretation of gene lists (2016 update). PMID:27098042
miR-200c: a versatile watchdog in cancer progression, EMT, and drug resistance. PMID:27094812
Ebola virus encodes a miR-155 analog to regulate importin-α5 expression. PMID:27094387
Small Non-coding RNAs Associated with Viral Infectious Diseases of Veterinary Importance: Potential Clinical Applications. PMID:27092305
The hibernating South American marsupial, Dromiciops gliroides, displays torpor-sensitive microRNA expression patterns. PMID:27090740
MiRTargetLink--miRNAs, Genes and Interaction Networks. PMID:27089332
NPInter v3.0: an upgraded database of noncoding RNA-associated interactions. PMID:27087310
Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding. PMID:27082250
PmiRExAt: plant miRNA expression atlas database and web applications. PMID:27081157
Integrative transcriptome analysis identifies deregulated microRNA-transcription factor networks in lung adenocarcinoma. PMID:27081085
MiR-299-5p regulates apoptosis through autophagy in neurons and ameliorates cognitive capacity in APPswe/PS1dE9 mice. PMID:27080144
Combined small RNA and degradome sequencing to identify miRNAs and their targets in response to drought in foxtail millet. PMID:27068810
Identification of additional risk loci for stroke and small vessel disease: a meta-analysis of genome-wide association studies. PMID:27068588
Identification of Arbuscular Mycorrhiza (AM)-Responsive microRNAs in Tomato. PMID:27066061
MicroRNA and Heart Failure. PMID:27058529
The cytoskeleton adaptor protein ankyrin-1 is upregulated by p53 following DNA damage and alters cell migration. PMID:27054339
Identification of Differentially Expressed microRNAs between the Fenpropathrin Resistant and Susceptible Strains in Tetranychus cinnabarinus. PMID:27050424
Mechanistically linked serum miRNAs distinguish between drug induced and fatty liver disease of different grades. PMID:27045805
Alcohol Use During Pregnancy is Associated with Specific Alterations in MicroRNA Levels in Maternal Serum. PMID:27038596
GAMDB: a web resource to connect microRNAs with autophagy in gerontology. PMID:27037912
Expression profile analysis of head and neck squamous cell carcinomas using data from The Cancer Genome Atlas. PMID:27035117
Splicing-dependent expression of microRNAs of mirtron origin in human digestive and excretory system cancer cells. PMID:27019673
miR-isomiRExp: a web-server for the analysis of expression of miRNA at the miRNA/isomiR levels. PMID:27009551
Small molecule-mediated up-regulation of microRNA targeting a key cell death modulator BNIP3 improves cardiac function following ischemic injury. PMID:27008992
Role of MicroRNAs in carcinogenesis that potential for biomarker of endometrial cancer. PMID:27006767
CCAR1 5' UTR as a natural miRancer of miR-1254 overrides tamoxifen resistance. PMID:27002217
Rbfox proteins regulate microRNA biogenesis by sequence-specific binding to their precursors and target downstream Dicer. PMID:27001519
Translating RNA sequencing into clinical diagnostics: opportunities and challenges. PMID:26996076
The miRNA biogenesis in marine bivalves. PMID:26989613
An integrative data analysis platform for gene set analysis and knowledge discovery in a data warehouse framework. PMID:26989145
Genetic Association of Curative and Adverse Reactions to Tyrosine Kinase Inhibitors in Chinese advanced Non-Small Cell Lung Cancer patients. PMID:26988277
Extracellular Vesicles and MicroRNAs: Their Role in Tumorigenicity and Therapy for Brain Tumors. PMID:26983830
In silico genome wide mining of conserved and novel miRNAs in the brain and pineal gland of Danio rerio using small RNA sequencing data. PMID:26981358
ncRNA orthologies in the vertebrate lineage. PMID:26980512
High-fat diet reprograms the epigenome of rat spermatozoa and transgenerationally affects metabolism of the offspring. PMID:26977389
Small RNA and PARE sequencing in flower bud reveal the involvement of sRNAs in endodormancy release of Japanese pear (Pyrus pyrifolia 'Kosui'). PMID:26976036
Most microRNAs in the single-cell alga Chlamydomonas reinhardtii are produced by Dicer-like 3-mediated cleavage of introns and untranslated regions of coding RNAs. PMID:26968199
Global miRNA expression is temporally correlated with acute kidney injury in mice. PMID:26966664
miR-434-3p and DNA hypomethylation co-regulate eIF5A1 to increase AChRs and to improve plasticity in SCT rat skeletal muscle. PMID:26964899
Analyzing the Role of MicroRNAs in Schizophrenia in the Context of Common Genetic Risk Variants. PMID:26963595
Characterization and Profiling of Liver microRNAs by RNA-sequencing in Cattle Divergently Selected for Residual Feed Intake. PMID:26954124
Identification and Analysis of the Porcine MicroRNA in Porcine Cytomegalovirus-Infected Macrophages Using Deep Sequencing. PMID:26943793
Novel Mad2-targeting miR-493-3p controls mitotic fidelity and cancer cells' sensitivity to paclitaxel. PMID:26943585
Long non-coding RNA containing ultraconserved genomic region 8 promotes bladder cancer tumorigenesis. PMID:26943042
High-throughput discovery of post-transcriptional cis-regulatory elements. PMID:26941072
High throughput sequencing of small RNAs transcriptomes in two Crassostrea oysters identifies microRNAs involved in osmotic stress response. PMID:26940974
TCF4-Targeting miR-124 is Differentially Expressed amongst Dendritic Cell Subsets. PMID:26937233
miRNA Profiling Reveals Dysregulation of RET and RET-Regulating Pathways in Hirschsprung's Disease. PMID:26933947
Transcriptional regulation of miR-15b by c-Rel and CREB in Japanese encephalitis virus infection. PMID:26931521
Characterization of an extensive rainbow trout miRNA transcriptome by next generation sequencing. PMID:26931235
lncRNA-RNA Interactions across the Human Transcriptome. PMID:26930590
Urinary Exosomal miRNA Signature in Type II Diabetic Nephropathy Patients. PMID:26930277
Divergence in gene expression within and between two closely related flycatcher species. PMID:26928872
Significant impact of miRNA-target gene networks on genetics of human complex traits. PMID:26927695
Serum-circulating miRNAs predict neuroblastoma progression in mouse model of high-risk metastatic disease. PMID:26921195
Posttranscriptional regulation of FOXO expression: microRNAs and beyond. PMID:26920226
Six Serum miRNAs Fail to Validate as Myotonic Dystrophy Type 1 Biomarkers. PMID:26919350
Guidelines for the functional annotation of microRNAs using the Gene Ontology. PMID:26917558
Small RNA Profiling in Dengue Virus 2-Infected Aedes Mosquito Cells Reveals Viral piRNAs and Novel Host miRNAs. PMID:26914027
MicroRNAs in Rice Innate Immunity. PMID:26897721
Constructing an integrated genetic and epigenetic cellular network for whole cellular mechanism using high-throughput next-generation sequencing data. PMID:26897165
Ensembl comparative genomics resources. PMID:26896847
miR-21 Might be Involved in Breast Cancer Promotion and Invasion Rather than in Initial Events of Breast Cancer Development. PMID:26891730
PlanTE-MIR DB: a database for transposable element-related microRNAs in plant genomes. PMID:26887375
Copy number variations in 119 Chinese children with idiopathic short stature identified by the custom genome-wide microarray. PMID:26884814
MicroRNAs for Fine-Tuning of Mouse Embryonic Stem Cell Fate Decision through Regulation of TGF-β Signaling. PMID:26876669
Synteny and comparative analysis of miRNA retention, conservation, and structure across Brassicaceae reveals lineage- and sub-genome-specific changes. PMID:26873704
miR-451a is underexpressed and targets AKT/mTOR pathway in papillary thyroid carcinoma. PMID:26871295
Integrated genomic profiling identifies microRNA-92a regulation of IQGAP2 in locally advanced rectal cancer. PMID:26865277
Prediction of Immunomodulatory potential of an RNA sequence for designing non-toxic siRNAs and RNA-based vaccine adjuvants. PMID:26861761
Small RNA and degradome deep sequencing reveals drought-and tissue-specific micrornas and their important roles in drought-sensitive and drought-tolerant tomato genotypes. PMID:26857916
miR-145 sensitizes gallbladder cancer to cisplatin by regulating multidrug resistance associated protein 1. PMID:26852750
miR-30-5p Regulates Muscle Differentiation and Alternative Splicing of Muscle-Related Genes by Targeting MBNL. PMID:26840300
The Role of MicroRNAs in Antiarrhythmic Therapy for Atrial Fibrillation. PMID:26835117
Novel functional microRNAs from virus-free and infected Vitis vinifera plants under water stress. PMID:26833264
RNA-seq of human reference RNA samples using a thermostable group II intron reverse transcriptase. PMID:26826130
Possible Biomarkers in Blood for Crohn's Disease: Oxidative Stress and MicroRNAs-Current Evidences and Further Aspects to Unravel. PMID:26823944
Bioinformatics Resources for MicroRNA Discovery. PMID:26819547
MicroRNAs Expressed during Viral Infection: Biomarker Potential and Therapeutic Considerations. PMID:26819546
MicroRNA-mediated interactions between host and hepatitis C virus. PMID:26819516
Distinct cognitive effects and underlying transcriptome changes upon inhibition of individual miRNAs in hippocampal neurons. PMID:26813637
A survey of best practices for RNA-seq data analysis. PMID:26813401
Expression Profiles and Biological Roles of miR-196a in Swine. PMID:26805888
Genome-Wide Investigation of MicroRNAs and Their Targets in Response to Freezing Stress in Medicago sativa L., Based on High-Throughput Sequencing. PMID:26801649
Integrative Analysis of the microRNAome and Transcriptome Illuminates the Response of Susceptible Rice Plants to Rice Stripe Virus. PMID:26799317
Unveiling the Micronome of Cassava (Manihot esculenta Crantz). PMID:26799216
Gene Expressing and sRNA Sequencing Show That Gene Differentiation Associates with a Yellow Acer palmatum Mutant Leaf in Different Light Conditions. PMID:26788511
Quantitative evaluation of first, second, and third generation hairpin systems reveals the limit of mammalian vector-based RNAi. PMID:26786363
Relationship between microRNA genes incidence and cancer-associated genomic regions in canine tumors: a comprehensive bioinformatics study. PMID:26780769
Integrative meta-analysis identifies microRNA-regulated networks in infantile hemangioma. PMID:26772808
Systematic Identification and Characterization of Long Non-Coding RNAs in the Silkworm, Bombyx mori. PMID:26771876
miRNAs Regulation and Its Role as Biomarkers in Endometriosis. PMID:26771608
MicroRNAs and cardiovascular medicine. PMID:26770714
Piwi-interacting RNAs in cancer: emerging functions and clinical utility. PMID:26768585
A large microRNA cluster on chromosome 19 is a transcriptional hallmark of WHO type A and AB thymomas. PMID:26766736
The Host Shapes the Gut Microbiota via Fecal MicroRNA. PMID:26764595
Design of Effective Primary MicroRNA Mimics With Different Basal Stem Conformations. PMID:26756196
iMiRNA-SSF: Improving the Identification of MicroRNA Precursors by Combining Negative Sets with Different Distributions. PMID:26753561
Guardian of Genetic Messenger-RNA-Binding Proteins. PMID:26751491
miR-185 mediates lung epithelial cell death after oxidative stress. PMID:26747785
A novel variable exonic region and differential expression of LINC00663 non-coding RNA in various cancer cell lines and normal human tissue samples. PMID:26743782
Identification and characterization of microRNAs in the plant parasitic root-knot nematode Meloidogyne incognita using deep sequencing. PMID:26743520
Improving microRNA target prediction by modeling with unambiguously identified microRNA-target pairs from CLIP-ligation studies. PMID:26743510
Signaling and molecular basis of bone marrow niche angiogenesis in leukemia. PMID:26742939
A transcriptome-wide, organ-specific regulatory map of Dendrobium officinale, an important traditional Chinese orchid herb. PMID:26732614
Association genetics in Populus reveals the interactions between Pto-miR160a and its target Pto-ARF16. PMID:26732268
Identification of miRNAs and their targets by high-throughput sequencing and degradome analysis in cytoplasmic male-sterile line NJCMS1A and its maintainer NJCMS1B of soybean. PMID:26729289
The transcriptome of nitrofen-induced pulmonary hypoplasia in the rat model of congenital diaphragmatic hernia. PMID:26720608
MicroRNA-34a Negatively Regulates Efferocytosis by Tissue Macrophages in Part via SIRT1. PMID:26718338
MicroRNA Expression in Formalin-fixed Paraffin-embedded Cancer Tissue: Identifying Reference MicroRNAs and Variability. PMID:26714641
Novel and conserved miRNAs in the halophyte Suaeda maritima identified by deep sequencing and computational predictions using the ESTs of two mangrove plants. PMID:26714456
The role of microRNAs in cardiac development and regenerative capacity. PMID:26702142
High Throughput qPCR Expression Profiling of Circulating MicroRNAs Reveals Minimal Sex- and Sample Timing-Related Variation in Plasma of Healthy Volunteers. PMID:26699132
CancerNet: a database for decoding multilevel molecular interactions across diverse cancer types. PMID:26690544
The microRNA-29 family in cartilage homeostasis and osteoarthritis. PMID:26687115
Molecular analysis of pediatric brain tumors identifies microRNAs in pilocytic astrocytomas that target the MAPK and NF-κB pathways. PMID:26682910
Genome-wide analysis of tomato long non-coding RNAs and identification as endogenous target mimic for microRNA in response to TYLCV infection. PMID:26679690
Exosomes from bulk and stem cells from human prostate cancer have a differential microRNA content that contributes cooperatively over local and pre-metastatic niche. PMID:26675257
The European Bioinformatics Institute in 2016: Data growth and integration. PMID:26673705
Double-stranded microRNA mimics can induce length- and passenger strand-dependent effects in a cell type-specific manner. PMID:26670622
CircInteractome: A web tool for exploring circular RNAs and their interacting proteins and microRNAs. PMID:26669964
microRNAs Distinctively Regulate Vascular Smooth Muscle and Endothelial Cells: Functional Implications in Angiogenesis, Atherosclerosis, and In-Stent Restenosis. PMID:26662986
CANTATAdb: A Collection of Plant Long Non-Coding RNAs. PMID:26657895
HRGRN: A Graph Search-Empowered Integrative Database of Arabidopsis Signaling Transduction, Metabolism and Gene Regulation Networks. PMID:26657893
A pH Sensitive High-Throughput Assay for miRNA Binding of a Peptide-Aminoglycoside (PA) Library. PMID:26656788
Interplay between miRNA regulation and mechanical stress for CUC gene expression at the shoot apical meristem. PMID:26653277
The Role of MicroRNAs in the Regulation of K(+) Channels in Epithelial Tissue. PMID:26648872
Reproducible features of small RNAs in C. elegans reveal NU RNAs and provide insights into 22G RNAs and 26G RNAs. PMID:26647462
Improved Pre-miRNA Classification by Reducing the Effect of Class Imbalance. PMID:26640803
MiRNAs and Other Epigenetic Changes as Biomarkers in Triple Negative Breast Cancer. PMID:26633365
DICER1 and microRNA regulation in post-traumatic stress disorder with comorbid depression. PMID:26632874
microRNA targeting of the P2X7 purinoceptor opposes a contralateral epileptogenic focus in the hippocampus. PMID:26631939
The miR-302/367 cluster: a comprehensive update on its evolution and functions. PMID:26631377
MicroRNAs as growth regulators, their function and biomarker status in colorectal cancer. PMID:26623728
MicroRNA-650 in a copy number-variable region regulates the production of interleukin 6 in human osteosarcoma cells. PMID:26622897
microRNA-18a regulates gastric carcinoma cell apoptosis and invasion by suppressing hypoxia-inducible factor-1α expression. PMID:26622381
Production of functional small interfering RNAs by an amino-terminal deletion mutant of human Dicer. PMID:26621737
Increased production of piRNAs from euchromatic clusters and genes in Anopheles gambiae compared with Drosophila melanogaster. PMID:26617674
DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts. PMID:26612864
MicroRNA target prediction using thermodynamic and sequence curves. PMID:26608597
Promoter-based identification of novel non-coding RNAs reveals the presence of dicistronic snoRNA-miRNA genes in Arabidopsis thaliana. PMID:26607788
MicroRNA in inflammatory bowel disease: Translational research and clinical implication. PMID:26604636
MicroRNA Profiles of Barrett's Esophagus and Esophageal Adenocarcinoma: Differences in Glandular Non-native Epithelium. PMID:26604271
Profile of microRNA in Giant Panda Blood: A Resource for Immune-Related and Novel microRNAs. PMID:26599861
miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database. PMID:26590260
deepBase v2.0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data. PMID:26590255
Regulation signature of miR-143 and miR-26 in porcine Salmonella infection identified by binding site enrichment analysis. PMID:26589421
DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators. PMID:26586797
Integrative analysis and expression profiling of secondary cell wall genes in C4 biofuel model Setaria italica reveals targets for lignocellulose bioengineering. PMID:26583030
piRNA cluster database: a web resource for piRNA producing loci. PMID:26582915
Proposal of supervised data analysis strategy of plasma miRNAs from hybridisation array data with an application to assess hemolysis-related deregulation. PMID:26581577
Role of bioinformatics in establishing microRNAs as modulators of abiotic stress responses: the new revolution. PMID:26578966
Bioinformatic tools for microRNA dissection. PMID:26578605
SomamiR 2.0: a database of cancer somatic mutations altering microRNA-ceRNA interactions. PMID:26578591
InsectBase: a resource for insect genomes and transcriptomes. PMID:26578584
High-throughput sequencing of RNAs isolated by cross-linking immunoprecipitation (HITS-CLIP) reveals Argonaute-associated microRNAs and targets in Schistosoma japonicum. PMID:26577460
Systematic study of cis-antisense miRNAs in animal species reveals miR-3661 to target PPP2CA in human cells. PMID:26577378
MicroRNA molecular profiling from matched tumor and bio-fluids in bladder cancer. PMID:26576778
The comprehensive immunomodulation of NeurimmiRs in haemocytes of oyster Crassostrea gigas after acetylcholine and norepinephrine stimulation. PMID:26576764
Deep sequencing of small RNA facilitates tissue and sex associated microRNA discovery in zebrafish. PMID:26574018
Identification and characterization of microRNAs from in vitro-grown pear shoots infected with Apple stem grooving virus in response to high temperature using small RNA sequencing. PMID:26573813
High transcript abundance, RNA editing, and small RNAs in intergenic regions within the massive mitochondrial genome of the angiosperm Silene noctiflora. PMID:26573088
A Comprehensive MicroRNA Expression Profile Related to Hypoxia Adaptation in the Tibetan Pig. PMID:26571238
miRge - A Multiplexed Method of Processing Small RNA-Seq Data to Determine MicroRNA Entropy. PMID:26571139
Knowledge-based analysis of functional impacts of mutations in microRNA seed regions. PMID:26564979
Identification of microRNAs in Macaca fascicularis (Cynomolgus Monkey) by Homology Search and Experimental Validation by Small RNA-Seq and RT-qPCR Using Kidney Cortex Tissues. PMID:26562842
Effectiveness and Usability of Bioinformatics Tools to Analyze Pathways Associated with miRNA Expression. PMID:26560461
Radiation and SN38 treatments modulate the expression of microRNAs, cytokines and chemokines in colon cancer cells in a p53-directed manner. PMID:26556872
Genome-wide analysis implicates microRNAs and their target genes in the development of bipolar disorder. PMID:26556287
High-Throughput Profiling of Caenorhabditis elegans Starvation-Responsive microRNAs. PMID:26554708
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation. PMID:26553804
DASHR: database of small human noncoding RNAs. PMID:26553799
miR-1343 attenuates pathways of fibrosis by targeting the TGF-β receptors. PMID:26542979
miRA: adaptable novel miRNA identification in plants using small RNA sequencing data. PMID:26542525
Computational Characterization of Exogenous MicroRNAs that Can Be Transferred into Human Circulation. PMID:26528912
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum. PMID:26518483
The functional role of microRNA in acute lymphoblastic leukemia: relevance for diagnosis, differential diagnosis, prognosis, and therapy. PMID:26508875
A Database of microRNA Expression Patterns in Xenopus laevis. PMID:26506012
Integrated analysis of miRNA and mRNA paired expression profiling of prenatal skeletal muscle development in three genotype pigs. PMID:26496978
microRNA regulation of peritoneal cavity homeostasis in peritoneal dialysis. PMID:26495316
β-Cell MicroRNAs: Small but Powerful. PMID:26494215
MtiBase: a database for decoding microRNA target sites located within CDS and 5'UTR regions from CLIP-Seq and expression profile datasets. PMID:26490638
Next-generation sequencing of microRNAs in primary human polarized macrophages. PMID:26484091
The Role of MicroRNAs as Predictors of Response to Tamoxifen Treatment in Breast Cancer Patients. PMID:26473850
Food Deprivation Affects the miRNome in the Lactating Goat Mammary Gland. PMID:26473604
A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome. PMID:26473382
Evolution and divergence of SBP-box genes in land plants. PMID:26467431
Dormancy-associated MADS-box genes and microRNAs jointly control dormancy transition in pear (Pyrus pyrifolia white pear group) flower bud. PMID:26466664
miRNA Nomenclature: A View Incorporating Genetic Origins, Biosynthetic Pathways, and Sequence Variants. PMID:26453491
MicroRNA-derived network analysis of differentially methylated genes in schizophrenia, implicating GABA receptor B1 [GABBR1] and protein kinase B [AKT1]. PMID:26450699
A cross-cancer differential co-expression network reveals microRNA-regulated oncogenic functional modules. PMID:26448606
Molecular Characterization and Expression Profiling of NAC Transcription Factors in Brachypodium distachyon L. PMID:26444425
Identification of Novel and Conserved microRNAs in Homalodisca vitripennis, the Glassy-Winged Sharpshooter by Expression Profiling. PMID:26440407
miRNA interventions serve as 'magic bullets' in the reversal of glioblastoma hallmarks. PMID:26439688
MicroRNAs in the oriental fruit fly, Bactrocera dorsalis: extending Drosophilid miRNA conservation to the Tephritidae. PMID:26438165
RNA-Binding Proteins in the Regulation of miRNA Activity: A Focus on Neuronal Functions. PMID:26437437
mirPRo-a novel standalone program for differential expression and variation analysis of miRNAs. PMID:26434581
ncRDeathDB: A comprehensive bioinformatics resource for deciphering network organization of the ncRNA-mediated cell death system. PMID:26431463
MicroRNAs in placental health and disease. PMID:26428496
MicroRNA Promoter Identification in Arabidopsis Using Multiple Histone Markers. PMID:26425556
miRSponge: a manually curated database for experimentally supported miRNA sponges and ceRNAs. PMID:26424084
Next generation sequencing profiling identifies miR-574-3p and miR-660-5p as potential novel prognostic markers for breast cancer. PMID:26416693
Targeted Knock-Down of miR21 Primary Transcripts Using snoMEN Vectors Induces Apoptosis in Human Cancer Cell Lines. PMID:26405811
Combinatorial Control of mRNA Fates by RNA-Binding Proteins and Non-Coding RNAs. PMID:26404389
tRNA-Derived Short Non-coding RNA as Interacting Partners of Argonaute Proteins. PMID:26401098
Transfer RNA detection by small RNA deep sequencing and disease association with myelodysplastic syndromes. PMID:26400237
Translational compensation of genomic instability in neuroblastoma. PMID:26399178
Comprehensive analysis of microRNA expression in regionalized human neural progenitor cells reveals microRNA-10 as a caudalizing factor. PMID:26395143
Identification of miRNAs Responsive to Botrytis cinerea in Herbaceous Peony (Paeonia lactiflora Pall.) by High-Throughput Sequencing. PMID:26393656
Transfer RNA as a source of small functional RNA. PMID:26389128
The expression and post-transcriptional regulation of FSTL1 transcripts in placental trophoblasts. PMID:26386648
Identification of novel small ncRNAs in pollen of tomato. PMID:26385469
miRVaS: a tool to predict the impact of genetic variants on miRNAs. PMID:26384425
Integrating mRNA and miRNA Weighted Gene Co-Expression Networks with eQTLs in the Nucleus Accumbens of Subjects with Alcohol Dependence. PMID:26381263
Noncoding Genomics in Gastric Cancer and the Gastric Precancerous Cascade: Pathogenesis and Biomarkers. PMID:26379360
The identification and characteristics of salinity-related microRNAs in gills of Portunus trituberculatus. PMID:26373863
Global Identification of MicroRNAs and Their Targets in Barley under Salinity Stress. PMID:26372557
Combined Small RNA and Degradome Sequencing Reveals Novel MiRNAs and Their Targets in the High-Yield Mutant Wheat Strain Yunong 3114. PMID:26372220
Genome-wide expression profiling of microRNAs in poplar upon infection with the foliar rust fungus Melampsora larici-populina. PMID:26370267
Regulatory RNAs and control of epigenetic mechanisms: expectations for cognition and cognitive dysfunction. PMID:26366811
miRTarVis: an interactive visual analysis tool for microRNA-mRNA expression profile data. PMID:26361498
Caenorhabditis elegans ALG-1 antimorphic mutations uncover functions for Argonaute in microRNA guide strand selection and passenger strand disposal. PMID:26351692
Roles for miRNAs in endocrine resistance in breast cancer. PMID:26346768
Alterations in serum microRNA in humans with alcohol use disorders impact cell proliferation and cell death pathways and predict structural and functional changes in brain. PMID:26341662
Tracking Distinct RNA Populations Using Efficient and Reversible Covalent Chemistry. PMID:26340425
MicroRNA expression profiles of cancer stem cells in head and neck squamous cell carcinoma. PMID:26323893
MicroRNAs as Therapeutic Targets in Colitis and Colitis-Associated Cancer: Tiny Players With a Giant Impact. PMID:26311277
MicroRNA Processing and Human Cancer. PMID:26308063
Selection Against Maternal microRNA Target Sites in Maternal Transcripts. PMID:26306531
Extracellular microRNAs as Biomarkers in Human Disease. PMID:26306299
Cooperation meets competition in microRNA-mediated DMPK transcript regulation. PMID:26304544
Identification of cold-inducible microRNAs in grapevine. PMID:26300896
Coxiella burnetii and Leishmania mexicana residing within similar parasitophorous vacuoles elicit disparate host responses. PMID:26300862
Enrichment Analysis Identifies Functional MicroRNA-Disease Associations in Humans. PMID:26296081
Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals. PMID:26292667
Genome-wide annotation of microRNA primary transcript structures reveals novel regulatory mechanisms. PMID:26290535
Negative Association of Plasma Levels of Vitamin D and miR-378 With Viral Load in Patients With Chronic Hepatitis B Infection. PMID:26288634
Endogenous microRNAs in human microvascular endothelial cells regulate mRNAs encoded by hypertension-related genes. PMID:26283043
Third Report on Chicken Genes and Chromosomes 2015. PMID:26282327
Comparative MiRNA Expressional Profiles and Molecular Networks in Human Small Bowel Tissues of Necrotizing Enterocolitis and Spontaneous Intestinal Perforation. PMID:26274503
Large-scale profiling of microRNAs for The Cancer Genome Atlas. PMID:26271990
Characterisation of peripheral blood mononuclear cell microRNA in hepatitis B-related acute-on-chronic liver failure. PMID:26267843
Large-Scale Transcriptome Analysis in Faba Bean (Vicia faba L.) under Ascochyta fabae Infection. PMID:26267359
Predicting effective microRNA target sites in mammalian mRNAs. PMID:26267216
A Rapid, High-Quality, Cost-Effective, Comprehensive and Expandable Targeted Next-Generation Sequencing Assay for Inherited Heart Diseases. PMID:26265630
MicroRNA-200c and microRNA-31 regulate proliferation, colony formation, migration and invasion in serous ovarian cancer. PMID:26260454
Post-transcriptional regulation of BRCA1 through its coding sequence by the miR-15/107 group of miRNAs. PMID:26257769
Overexpression of Arabidopsis thaliana ERI, the homolog of C. elegans Enhancer of RNAinterference, leads to enhanced growth. PMID:26257748
Sp-miR396a-5p acts as a stress-responsive genes regulator by conferring tolerance to abiotic stresses and susceptibility to Phytophthora nicotianae infection in transgenic tobacco. PMID:26242449
Genome-wide analysis of YB-1-RNA interactions reveals a novel role of YB-1 in miRNA processing in glioblastoma multiforme. PMID:26240386
Identification of novel drought-responsive microRNAs and trans-acting siRNAs from Sorghum bicolor (L.) Moench by high-throughput sequencing analysis. PMID:26236318
Antioxidant responses and cellular adjustments to oxidative stress. PMID:26233704
Cooperative target mRNA destabilization and translation inhibition by miR-58 microRNA family in C. elegans. PMID:26232411
Transcriptome Profiling of Developing Murine Lens Through RNA Sequencing. PMID:26225632
Constitutive Expression of Rice MicroRNA528 Alters Plant Development and Enhances Tolerance to Salinity Stress and Nitrogen Starvation in Creeping Bentgrass. PMID:26224802
Gender and Obesity Specific MicroRNA Expression in Adipose Tissue from Lean and Obese Pigs. PMID:26222688
MicroRNA Clusters in the Adult Mouse Heart: Age-Associated Changes. PMID:26221604
Update on the Pathogenic Implications and Clinical Potential of microRNAs in Cardiac Disease. PMID:26221581
The miR-200 Family: Versatile Players in Epithelial Ovarian Cancer. PMID:26213923
Comprehensive Annotation of Physcomitrella patens Small RNA Loci Reveals That the Heterochromatic Short Interfering RNA Pathway Is Largely Conserved in Land Plants. PMID:26209555
Blocking of targeted microRNAs from next-generation sequencing libraries. PMID:26209131
MicroRNAs: New Biomarkers for Diagnosis, Prognosis, Therapy Prediction and Therapeutic Tools for Breast Cancer. PMID:26199650
Expression of CRISPR/Cas single guide RNAs using small tRNA promoters. PMID:26187160
Homo sapiens exhibit a distinct pattern of CNV genes regulation: an important role of miRNAs and SNPs in expression plasticity. PMID:26178010
Nonrandom Distribution of miRNAs Genes and Single Nucleotide Variants in Keratoconus Loci. PMID:26176855
Circulating microRNA signature of genotype-by-age interactions in the long-lived Ames dwarf mouse. PMID:26176567
Integrated microRNA and mRNA responses to acute human left ventricular ischemia. PMID:26175501
The microRNA-183 cluster: the family that plays together stays together. PMID:26170234
Prognostic role of the LCS6 KRAS variant in locally advanced rectal cancer: results of the EXPERT-C trial. PMID:26162609
MicroRNA Expression Profile in Penile Cancer Revealed by Next-Generation Small RNA Sequencing. PMID:26158897
Regulation rewiring analysis reveals mutual regulation between STAT1 and miR-155-5p in tumor immunosurveillance in seven major cancers. PMID:26156524
High copy number variation of cancer-related microRNA genes and frequent amplification of DICER1 and DROSHA in lung cancer. PMID:26156018
MiR-21 in Extracellular Vesicles Leads to Neurotoxicity via TLR7 Signaling in SIV Neurological Disease. PMID:26154133
Transcriptome analysis of mRNA and miRNA in skeletal muscle indicates an important network for differential Residual Feed Intake in pigs. PMID:26150313
Oncogenic Role of miR-15a-3p in 13q Amplicon-Driven Colorectal Adenoma-to-Carcinoma Progression. PMID:26148070
Uridylation of RNA Hairpins by Tailor Confines the Emergence of MicroRNAs in Drosophila. PMID:26145176
mirEX 2.0 - an integrated environment for expression profiling of plant microRNAs. PMID:26141515
Comparative mapping of the 22q11.2 deletion region and the potential of simple model organisms. PMID:26137170
miR-155 Is Essential for Inflammation-Induced Hippocampal Neurogenic Dysfunction. PMID:26134658
Biomarker discovery: quantification of microRNAs and other small non-coding RNAs using next generation sequencing. PMID:26130076
Arabidopsis microRNA expression regulation in a wide range of abiotic stress responses. PMID:26089831
A unified gene catalog for the laboratory mouse reference genome. PMID:26084703
MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal elicitors. PMID:26083154
Human miR-3145 inhibits influenza A viruses replication by targeting and silencing viral PB1 gene. PMID:26080461
Robust Distal Tip Cell Pathfinding in the Face of Temperature Stress Is Ensured by Two Conserved microRNAS in Caenorhabditis elegans. PMID:26078280
Computational prediction of miRNAs and their targets in Phaseolus vulgaris using simple sequence repeat signatures. PMID:26067253
miR-137 Targets p160 Steroid Receptor Coactivators SRC1, SRC2, and SRC3 and Inhibits Cell Proliferation. PMID:26066330
MiRNA-based therapeutic intervention of cancer. PMID:26062952
Dual regulation by microRNA-200b-3p and microRNA-200b-5p in the inhibition of epithelial-to-mesenchymal transition in triple-negative breast cancer. PMID:26062653
p53 Represses the Oncogenic Sno-MiR-28 Derived from a SnoRNA. PMID:26061048
Genome-wide identification of the Phaseolus vulgaris sRNAome using small RNA and degradome sequencing. PMID:26059339
A 40-bp VNTR polymorphism in the 3'-untranslated region of DAT1/SLC6A3 is associated with ADHD but not with alcoholism. PMID:26058807
Families of microRNAs Expressed in Clusters Regulate Cell Signaling in Cervical Cancer. PMID:26057746
Circulating small non-coding RNA signature in head and neck squamous cell carcinoma. PMID:26057471
Co-existence of intact stemness and priming of neural differentiation programs in mES cells lacking Trim71. PMID:26057209
Genetic variants in microRNA genes: impact on microRNA expression, function, and disease. PMID:26052338
The biology of circulating microRNAs in cardiovascular disease. PMID:26046787
MicroRNAs in cardiovascular ageing. PMID:26040259
Identification of miR-194-5p as a potential biomarker for postmenopausal osteoporosis. PMID:26038726
Principles of miRNA-mRNA interactions: beyond sequence complementarity. PMID:26037721
MicroRNA regulation of lymphocyte tolerance and autoimmunity. PMID:26030228
Profiling the expression domains of a rice-specific microRNA under stress. PMID:26029232
Quantitative and qualitative analysis of small RNAs in human endothelial cells and exosomes provides insights into localized RNA processing, degradation and sorting. PMID:26027894
Mirinho: An efficient and general plant and animal pre-miRNA predictor for genomic and deep sequencing data. PMID:26022464
Downregulated miR-495 [Corrected] Inhibits the G1-S Phase Transition by Targeting Bmi-1 in Breast Cancer. PMID:26020378
Shifts in temperature within the physiologic range modify strand-specific expression of select human microRNAs. PMID:26018549
The use of high-throughput sequencing methods for plant microRNA research. PMID:26016494
Unique somatic and malignant expression patterns implicate PIWI-interacting RNAs in cancer-type specific biology. PMID:26013764
High Throughput Sequencing of Small RNAs in the Two Cucurbita Germplasm with Different Sodium Accumulation Patterns Identifies Novel MicroRNAs Involved in Salt Stress Response. PMID:26010449
General hallmarks of microRNAs in brain evolution and development. PMID:26000728
Noncoding RNAs in human saliva as potential disease biomarkers. PMID:25999984
Roles of small RNAs in the effects of nutrition on apoptosis and spermatogenesis in the adult testis. PMID:25996545
miRVine: a microRNA expression atlas of grapevine based on small RNA sequencing. PMID:25981679
MicroRNA expression profiles predict clinical phenotypes and prognosis in chromophobe renal cell carcinoma. PMID:25981392
TUT7 controls the fate of precursor microRNAs by using three different uridylation mechanisms. PMID:25979828
Gap junctions modulate glioma invasion by direct transfer of microRNA. PMID:25978028
MicroRNA-375 plays a dual role in prostate carcinogenesis. PMID:25977730
DIANA-miRPath v3.0: deciphering microRNA function with experimental support. PMID:25977294
Computational identification of novel microRNAs and their targets in the malarial vector, Anopheles stephensi. PMID:25972985
GLAST But Not Least--Distribution, Function, Genetics and Epigenetics of L-Glutamate Transport in Brain--Focus on GLAST/EAAT1. PMID:25972039
MiRduplexSVM: A High-Performing MiRNA-Duplex Prediction and Evaluation Methodology. PMID:25961860
MicroRNAs and Cardiac Regeneration. PMID:25953925
RNA sequencing and functional analysis implicate the regulatory role of long non-coding RNAs in tomato fruit ripening. PMID:25948705
Identification of a novel FGFRL1 MicroRNA target site polymorphism for bone mineral density in meta-analyses of genome-wide association studies. PMID:25941324
NFFinder: an online bioinformatics tool for searching similar transcriptomics experiments in the context of drug repositioning. PMID:25940629
Assessment of small RNA sorting into different extracellular fractions revealed by high-throughput sequencing of breast cell lines. PMID:25940616
Dgcr8 and Dicer are essential for sex chromosome integrity during meiosis in males. PMID:25934699
Prognostic role of miR-200c in various malignancies: a systematic review and meta-analysis. PMID:25932122
Identification and analysis of unitary loss of long-established protein-coding genes in Poaceae shows evidences for biased gene loss and putatively functional transcription of relics. PMID:25927997
miRNAs in the Pathogenesis of Systemic Lupus Erythematosus. PMID:25927578
Identification of MicroRNAs and their Targets Associated with Embryo Abortion during Chrysanthemum Cross Breeding via High-Throughput Sequencing. PMID:25909659
Evolutionary Comparison of Two Combinatorial Regulators of SBP-Box Genes, MiR156 and MiR529, in Plants. PMID:25909360
An integrative approach to identify hexaploid wheat miRNAome associated with development and tolerance to abiotic stress. PMID:25903161
Integrated RNA-Seq and sRNA-Seq Analysis Identifies Chilling and Freezing Responsive Key Molecular Players and Pathways in Tea Plant (Camellia sinensis). PMID:25901577
Influence of microRNA-related polymorphisms on clinical outcomes in coronary artery disease. PMID:25901206
miRiadne: a web tool for consistent integration of miRNA nomenclature. PMID:25897123
Wnt antagonist, secreted frizzled-related protein 1, is involved in prenatal skeletal muscle development and is a target of miRNA-1/206 in pigs. PMID:25888412
Annotation of the goat genome using next generation sequencing of microRNA expressed by the lactating mammary gland: comparison of three approaches. PMID:25888052
Changes in cellular microRNA expression induced by porcine circovirus type 2-encoded proteins. PMID:25885539
MicroRNAs in Cancer Management: Big Challenges for Small Molecules. PMID:25879042
Challenges in using circulating miRNAs as cancer biomarkers. PMID:25874226
Improving small RNA-seq by using a synthetic spike-in set for size-range quality control together with a set for data normalization. PMID:25870415
RNA Sequencing and Analysis. PMID:25870306
Sequence features of Drosha and Dicer cleavage sites affect the complexity of isomiRs. PMID:25867481
Evidence That Up-Regulation of MicroRNA-29 Contributes to Postnatal Body Growth Deceleration. PMID:25866874
High-Throughput Sequencing Reveals Diverse Sets of Conserved, Nonconserved, and Species-Specific miRNAs in Jute. PMID:25861616
MicroRNA-like small RNAs prediction in the development of Antrodia cinnamomea. PMID:25860872
Non-coding RNAs and HIV: viral manipulation of host dark matter to shape the cellular environment. PMID:25859257
miRGate: a curated database of human, mouse and rat miRNA-mRNA targets. PMID:25858286
Bioinformatic identification and expression analysis of banana microRNAs and their targets. PMID:25856313
Concordant dysregulation of miR-5p and miR-3p arms of the same precursor microRNA may be a mechanism in inducing cell proliferation and tumorigenesis: a lung cancer study. PMID:25852169
High-throughput deep sequencing reveals that microRNAs play important roles in salt tolerance of euhalophyte Salicornia europaea. PMID:25848810
Association mapping in Populus reveals the interaction between Pto-miR530a and its target Pto-KNAT1. PMID:25833262
Unveiling the principle of microRNA-mediated redundancy in cellular pathway regulation. PMID:25826657
Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods. PMID:25826400
Conservation and losses of non-coding RNAs in avian genomes. PMID:25822729
Expression quantitative trait loci (eQTLs) in microRNA genes are enriched for schizophrenia and bipolar disorder association signals. PMID:25817407
In silico analysis of the genes encoding proteins that are involved in the biosynthesis of the RMS/MAX/D pathway revealed new roles of Strigolactones in plants. PMID:25815594
Highly specific gene silencing in a monocot species by artificial microRNAs derived from chimeric miRNA precursors. PMID:25809382
Identification of a microRNA signature for the diagnosis of fibromyalgia. PMID:25803872
Structural imprints in vivo decode RNA regulatory mechanisms. PMID:25799993
Placental expression of miR-517a/b and miR-517c contributes to trophoblast dysfunction and preeclampsia. PMID:25799546
Entropy-based model for miRNA isoform analysis. PMID:25785816
Outside the coding genome, mammalian microRNAs confer structural and functional complexity. PMID:25783159
The Expansion of Animal MicroRNA Families Revisited. PMID:25780960
Dumbbell-PCR: a method to quantify specific small RNA variants with a single nucleotide resolution at terminal sequences. PMID:25779041
microRNA-based diagnostics and therapy in cardiovascular disease-Summing up the facts. PMID:25774345
The role of non-coding RNAs in the regulation of stem cells and progenitors in the normal mammary gland and in breast tumors. PMID:25774169
Identification of AGO3-associated miRNAs and computational prediction of their targets in the green alga Chlamydomonas reinhardtii. PMID:25769981
Critical analysis of the potential for microRNA biomarkers in breast cancer management. PMID:25759599
microRNA regulation in cancer: One arm or two arms? PMID:25758934
Differential expression of microRNAs in postoperative radiotherapy sensitive and resistant patients with glioblastoma multiforme. PMID:25758051
MicroRNA modulators of epigenetic regulation, the tumor microenvironment and the immune system in lung cancer. PMID:25743773
Profiling of Virus-Encoded MicroRNAs in Epstein-Barr Virus-Associated Gastric Carcinoma and Their Roles in Gastric Carcinogenesis. PMID:25740983
Hsa-microRNA-181a is a regulator of a number of cancer genes and a biomarker for endometrial carcinoma in patients: a bioinformatic and clinical study and the therapeutic implication. PMID:25733820
Potential small guide RNAs for tRNase ZL from human plasma, peripheral blood mononuclear cells, and cultured cell lines. PMID:25730316
The microRNA feedback regulation of p63 in cancer progression. PMID:25726529
Potent degradation of neuronal miRNAs induced by highly complementary targets. PMID:25724380
N6-adenosine methylation in MiRNAs. PMID:25723394
Comprehensive miRNA sequence analysis reveals survival differences in diffuse large B-cell lymphoma patients. PMID:25723320
MicroRNA-mediated regulation of p21 and TASK1 cellular restriction factors enhances HIV-1 infection. PMID:25717002
microRNAs regulate cell-to-cell variability of endogenous target gene expression in developing mouse thymocytes. PMID:25714103
Biological databases for human research. PMID:25712261
Effects of Rosmarinus officinalis extract on human primary omental preadipocytes and adipocytes. PMID:25710930
Integrated analyses to reconstruct microRNA-mediated regulatory networks in mouse liver using high-throughput profiling. PMID:25707768
APP intracellular domain acts as a transcriptional regulator of miR-663 suppressing neuronal differentiation. PMID:25695604
Regulation of RNA metabolism is important for in vitro dedifferentiation of plant cells. PMID:25694002
Comprehensive analysis of human small RNA sequencing data provides insights into expression profiles and miRNA editing. PMID:25692236
The role of microRNAs in osteoclasts and osteoporosis. PMID:25692234
Computational Prediction of miRNA Genes from Small RNA Sequencing Data. PMID:25674563
MicroRNAs and the regulation of aldosterone signaling in the kidney. PMID:25673770
miRNAs regulated by estrogens, tamoxifen, and endocrine disruptors and their downstream gene targets. PMID:25659536
CLIPdb: a CLIP-seq database for protein-RNA interactions. PMID:25652745
SOX4 interacts with EZH2 and HDAC3 to suppress microRNA-31 in invasive esophageal cancer cells. PMID:25644061
Methylated microRNA genes of the developing murine palate. PMID:25642850
Recent progress in the genetics and epigenetics of paraoxonase: why it is relevant to children's environmental health. PMID:25635583
A tumor-specific microRNA signature predicts survival in clear cell renal cell carcinoma. PMID:25633718
Distribution of miRNA genes in the pig genome. PMID:25632794
Association between miR-125a rs12976445 and survival in breast cancer patients. PMID:25628797
Correlation of circular RNA abundance with proliferation--exemplified with colorectal and ovarian cancer, idiopathic lung fibrosis, and normal human tissues. PMID:25624062
Extracellular Onchocerca-derived small RNAs in host nodules and blood. PMID:25623184
MBSTAR: multiple instance learning for predicting specific functional binding sites in microRNA targets. PMID:25614300
A Computational Approach for Predicting Role of Human MicroRNAs in MERS-CoV Genome. PMID:25610462
A deeply conserved, noncanonical miRNA hosted by ribosomal DNA. PMID:25605965
Identification and characterization of microRNAs from Chinese pollination constant non-astringent persimmon using high-throughput sequencing. PMID:25604351
The Tumor Cytosol miRNAs, Fluid miRNAs, and Exosome miRNAs in Lung Cancer. PMID:25601903
Identification of microRNAs and target genes in the fruit and shoot tip of Lycium chinense: a traditional Chinese medicinal plant. PMID:25587984
Small tRNA-derived RNAs are increased and more abundant than microRNAs in chronic hepatitis B and C. PMID:25567797
From guide to target: molecular insights into eukaryotic RNA-interference machinery. PMID:25565029
Methods and compositions for amplification and detection of microRNAs (miRNAs) and noncoding RNAs (ncRNAs) using the signature sequence amplification method (SSAM). PMID:25564022
Alternative RNA structure-coupled gene regulations in tumorigenesis. PMID:25551597
Identification of the endosomal sorting complex required for transport-I (ESCRT-I) as an important modulator of anti-miR uptake by cancer cells. PMID:25550434
Comprehensive reconstruction and visualization of non-coding regulatory networks in human. PMID:25540777
The oncogenic and prognostic potential of eight microRNAs identified by a synergetic regulatory network approach in lung cancer. PMID:25539849
The liverwort Pellia endiviifolia shares microtranscriptomic traits that are common to green algae and land plants. PMID:25530158
Identification, expression, and molecular evolution of microRNAs in the "living fossil" Triops cancriformis (tadpole shrimp). PMID:25525151
Concise review: custodians of the transcriptome: how microRNAs guard stemness in squamous epithelia. PMID:25524325
A human herpesvirus 6A-encoded microRNA: role in viral lytic replication. PMID:25520507
Identification of Wolbachia-responsive microRNAs in the two-spotted spider mite, Tetranychus urticae. PMID:25515563
Identification of a polyomavirus microRNA highly expressed in tumors. PMID:25514573
The Role of microRNAs in Bovine Infection and Immunity. PMID:25505900
MicroRNA-181b regulates ALX/FPR2 receptor expression and proresolution signaling in human macrophages. PMID:25505240
Functional and evolutionary significance of human microRNA seed region mutations. PMID:25501359
MicroRNA Dysregulation, Gene Networks, and Risk for Schizophrenia in 22q11.2 Deletion Syndrome. PMID:25484875
Non-coding RNA gene families in the genomes of anopheline mosquitoes. PMID:25432596
GRASP v2.0: an update on the Genome-Wide Repository of Associations between SNPs and phenotypes. PMID:25428361
Identification of host miRNAs that may limit human rhinovirus replication. PMID:25426267
MicroRNA-binding site polymorphisms in hematological malignancies. PMID:25421940
MicroRNAs of two medically important mosquito species: Aedes aegypti and Anopheles stephensi. PMID:25420875
DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions. PMID:25416803
De novo transcriptome assembly, gene annotation, marker development, and miRNA potential target genes validation under abiotic stresses in Oenanthe javanica. PMID:25416420
The draft genome of the large yellow croaker reveals well-developed innate immunity. PMID:25407894
On the normalization of the minimum free energy of RNAs by sequence length. PMID:25405875
Potential microRNA-mediated oncogenic intercellular communication revealed by pan-cancer analysis. PMID:25403569
PNRD: a plant non-coding RNA database. PMID:25398903
Heterogeneity and individuality: microRNAs in mental disorders. PMID:25395183
Profiling the microRNA Expression in Human iPS and iPS-derived Retinal Pigment Epithelium. PMID:25392691
Rfam 12.0: updates to the RNA families database. PMID:25392425
The emerging role of non-coding RNA in essential hypertension and blood pressure regulation. PMID:25391760
MicroRNAs in kidney physiology and disease. PMID:25385286
Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes. PMID:25384563
β-catenin mediates stress resilience through Dicer1/microRNA regulation. PMID:25383518
VIRmiRNA: a comprehensive resource for experimentally validated viral miRNAs and their targets. PMID:25380780
miRDB: an online resource for microRNA target prediction and functional annotations. PMID:25378301
Characterization of microRNA expression profiles in Leishmania-infected human phagocytes. PMID:25376316
Small and Long Regulatory RNAs in the Immune System and Immune Diseases. PMID:25368617
Genome-wide identification and evolutionary analysis of positively selected miRNA genes in domesticated rice. PMID:25362560
Regulation of Cardiac Cell Fate by microRNAs: Implications for Heart Regeneration. PMID:25358052
Genome-wide association study identifies phospholipase C zeta 1 (PLCz1) as a stallion fertility locus in Hanoverian warmblood horses. PMID:25354211
RNAcentral: an international database of ncRNA sequences. PMID:25352543
Analytical tools and current challenges in the modern era of neuroepigenomics. PMID:25349914
Exploring the genes of yerba mate (Ilex paraguariensis A. St.-Hil.) by NGS and de novo transcriptome assembly. PMID:25330175
Global identification of target recognition and cleavage by the Microprocessor in human ES cells. PMID:25326327
Effects of Acute Prenatal Exposure to Ethanol on microRNA Expression are Ameliorated by Social Enrichment. PMID:25309888
Genomic dissection of the seed. PMID:25309563
Copy number variants in short children born small for gestational age. PMID:25300501
Evaluation of miR-720 prognostic significance in patients with colorectal cancer. PMID:25286763
Integrated analysis of miRNA and mRNA expression profiles in response to Cd exposure in rice seedlings. PMID:25273267
HSP90α plays an important role in piRNA biogenesis and retrotransposon repression in mouse. PMID:25262350
RNA expression profiling of human iPSC-derived cardiomyocytes in a cardiac hypertrophy model. PMID:25255322
The potential of microRNAs in personalized medicine against cancers. PMID:25243170
MicroRNAs mediate dietary-restriction-induced longevity through PHA-4/FOXA and SKN-1/Nrf transcription factors. PMID:25242029
The use of microRNA by human viruses: lessons from NK cells and HCMV infection. PMID:25234555
Optimization of extraction of circulating RNAs from plasma--enabling small RNA sequencing. PMID:25229651
Guidelines for the nomenclature of genetic elements in tunicate genomes. PMID:25220678
The role of microRNAs in human neural stem cells, neuronal differentiation and subtype specification. PMID:25172833
A genome-wide map of hyper-edited RNA reveals numerous new sites. PMID:25158696
Target repression induced by endogenous microRNAs: large differences, small effects. PMID:25141277
Identification of conserved and novel microRNAs in the Pacific oyster Crassostrea gigas by deep sequencing. PMID:25137038
Systematic identification of 3'-UTR regulatory elements in activity-dependent mRNA stability in hippocampal neurons. PMID:25135970
A quest for miRNA bio-marker: a track back approach from gingivo buccal cancer to two different types of precancers. PMID:25126847
Circulating microRNA profiles in human patients with acetaminophen hepatotoxicity or ischemic hepatitis. PMID:25092309
Prognostic value of miR-221-3p, miR-342-3p and miR-491-5p expression in colon cancer. PMID:25075256
A-to-I editing in the miRNA seed region regulates target mRNA selection and silencing efficiency. PMID:25056317
Single-cell RNA-seq: advances and future challenges. PMID:25053837
Long-term evolution of nucleotide-binding site-leucine-rich repeat genes: understanding gained from and beyond the legume family. PMID:25052854
Identification of microRNAs specific for high producer CHO cell lines using steady-state cultivation. PMID:25052466
PAPD5-mediated 3' adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease. PMID:25049417
Regulation of microRNA biogenesis. PMID:25027649
Identification and consequences of miRNA-target interactions--beyond repression of gene expression. PMID:25022902
High-throughput sequencing reveals small RNAs involved in ASGV infection. PMID:24998458
AGO1 controls arabidopsis inflorescence architecture possibly by regulating TFL1 expression. PMID:24989784
Systems biology in the context of big data and networks. PMID:24982882
Role of miR-15/16 in CLL. PMID:24971479
Sex differences in microRNA expression during development in rat cortex. PMID:24969725
Epigenetic regulation of adult neural stem cells: implications for Alzheimer's disease. PMID:24964731
Early microRNA expression profile as a prognostic biomarker for the development of pelvic inflammatory disease in a mouse model of chlamydial genital infection. PMID:24961692
Argonaute-dependent small RNAs derived from single-stranded, non-structured precursors. PMID:24959173
In silico identification of plant miRNAs in mammalian breast milk exosomes--a small step forward? PMID:24933019
The role of microRNAs in lymphopoiesis. PMID:24929847
Different miRNA expression profiles between human breast cancer tumors and serum. PMID:24904649
Polymorphisms in microRNA target sites modulate risk of lymphoblastic and myeloid leukemias and affect microRNA binding. PMID:24886876
Whole-genome discovery of miRNAs and their targets in wheat (Triticum aestivum L.). PMID:24885911
Association between risk of oral precancer and genetic variations in microRNA and related processing genes. PMID:24885463
Concise review: new frontiers in microRNA-based tissue regeneration. PMID:24873861
MicroRNA function in the profibrogenic interplay upon chronic liver disease. PMID:24871365
Expanding the annotation of zebrafish microRNAs based on small RNA sequencing. PMID:24835514
STarMir: a web server for prediction of microRNA binding sites. PMID:24803672
Ribogenomics: the science and knowledge of RNA. PMID:24769101
Endogenous small RNA clusters in plants. PMID:24769055
Characterization of miRNomes in acute and chronic myeloid leukemia cell lines. PMID:24755403
Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.). PMID:24734873
Inferring the evolutionary history of primate microRNA binding sites: overcoming motif counting biases. PMID:24723422
Evidence for the biogenesis of more than 1,000 novel human microRNAs. PMID:24708865
microRNAs in axon guidance. PMID:24672429
MicroRNAs in the Regulation of MMPs and Metastasis. PMID:24670365
Micro spies from the brain to the periphery: new clues from studies on microRNAs in neuropsychiatric disorders. PMID:24653674
miRBase: tools for microRNA genomics PubMed citations: 2171.

2171 articles citing: miRBase: tools for microRNA genomics

Transcriptome analysis revealed gene expression feminization of testis after exogenous tetrodotoxin administration in pufferfish Takifugu flavidus. PMID:35922761
Human placental microRNAs dysregulated by cadmium exposure predict neurobehavioral outcomes at birth. PMID:35906307
A Bioinformatics Approach to MicroRNA-Sequencing Analysis Based on Human Saliva Samples of Patients with Endometriosis. PMID:35887388
Genome-Wide Analysis of microRNAs Identifies the Lipid Metabolism Pathway to Be a Defining Factor in Adipose Tissue From Different Sheep. PMID:35880040
Identification and Characterization of Long Non-coding RNA in Tomato Roots Under Salt Stress. PMID:35865296
MiR-4763-3p targeting RASD2as a Potential Biomarker and Therapeutic Target for Schizophrenia. PMID:35855328
Molecular Dissection of a Conserved Cluster of miRNAs Identifies Critical Structural Determinants That Mediate Differential Processing. PMID:35784477
Nested miRNA Secondary Structure Is a Unique Determinant of miR159 Efficacy in Arabidopsis. PMID:35720551
CircRFWD3 promotes HNSCC metastasis by modulating miR-27a/b/PPARγ signaling. PMID:35690612
ceRNAshiny: An Interactive R/Shiny App for Identification and Analysis of ceRNA Regulation. PMID:35647026
Identification of microRNAs in the Lyme Disease Vector Ixodes scapularis. PMID:35628370
Endometriosis Associated-miRNome Analysis of Blood Samples: A Prospective Study. PMID:35626305
MicroRNA-503 Exacerbates Myocardial Ischemia/Reperfusion Injury via Inhibiting PI3K/Akt- and STAT3-Dependent Prosurvival Signaling Pathways. PMID:35620576
miR-155-3p: processing by-product or rising star in immunity and cancer? PMID:35611569
Dissection of the microRNA Network Regulating Hedgehog Signaling in Drosophila. PMID:35573695
RNA-Seq, Bioinformatic Identification of Potential MicroRNA-like Small RNAs in the Edible Mushroom Agaricus bisporus and Experimental Approach for Their Validation. PMID:35563314
The Role of Epigenetics in Primary Biliary Cholangitis. PMID:35563266
Investigation of the relationship between miR-33a, miR-122, erythrocyte membrane fatty acids profile, and serum lipids with components of metabolic syndrome in type 2 diabetic patients. PMID:35531134
Verticillium dahliae Secretes Small RNA to Target Host MIR157d and Retard Plant Floral Transition During Infection. PMID:35519822
MicroRNA Profile of MA-104 Cell Line Associated With the Pathogenesis of Bovine Rotavirus Strain Circulated in Chinese Calves. PMID:35516441
Mapping the epithelial-immune cell interactome upon infection in the gut and the upper airways. PMID:35501398
Seminal plasma piRNA array analysis and identification of possible biomarker piRNAs for the diagnosis of asthenozoospermia. PMID:35493429
Set of miRNAs Involved in Sulfur Uptake and the Assimilation Pathway of Indian Mustard (B. juncea) in Response to Sulfur Treatments. PMID:35474774
A Multi-Level Iterative Bi-Clustering Method for Discovering miRNA Co-regulation Network of Abiotic Stress Tolerance in Soybeans. PMID:35463453
Characteristics of the MicroRNA Expression Profile of Exosomes Released by Vero Cells Infected with Porcine Epidemic Diarrhea Virus. PMID:35458536
Distinct CholinomiR Blood Cell Signature as a Potential Modulator of the Cholinergic System in Women with Fibromyalgia Syndrome. PMID:35455956
Integrated Analysis of Physiological, mRNA Sequencing, and miRNA Sequencing Data Reveals a Specific Mechanism for the Response to Continuous Cropping Obstacles in Pogostemon cablin Roots. PMID:35432413
Clone and Function Verification of the OPR gene in Brassica napus Related to Linoleic Acid Synthesis. PMID:35410118
Genome-wide variants and polygenic risk scores for cognitive impairment following blood or marrow transplantation. PMID:35379913
Identification and evaluation of circulating small extracellular vesicle microRNAs as diagnostic biomarkers for patients with indeterminate pulmonary nodules. PMID:35366907
Expression characteristics and interaction networks of microRNAs in spleen tissues of grass carp (Ctenopharyngodon idella). PMID:35344574
hsa-miR-206b Involves in the Development of Papillary Thyroid Carcinoma via Targeting LMX1B. PMID:35342753
Evidence of antagonistic predictive effects of miRNAs in breast cancer cohorts through data-driven networks. PMID:35338170
Role of miRNAs in Neurodegeneration: From Disease Cause to Tools of Biomarker Discovery and Therapeutics. PMID:35327979
Single cell multi-miRNAs quantification with hydrogel microbeads for liver cancer cell subtypes discrimination. PMID:35308856
microRNA profile of Hermetia illucens (black soldier fly) and its implications on mass rearing. PMID:35298540
Swelling-induced upregulation of miR-141-3p inhibits hepatocyte proliferation. PMID:35287291
LncRNA-miRNA-mRNA Network Analysis Reveals the Potential Biomarkers in Crohn's Disease Rats Treated with Herb-Partitioned Moxibustion. PMID:35282268
Nitrate/ammonium-responsive microRNA-mRNA regulatory networks affect root system architecture in Populus × canescens. PMID:35246022
Integrated analysis of the transcriptome, sRNAome, and degradome reveals the network regulating fruit skin coloration in sponge gourd (Luffa cylindrica). PMID:35228643
Identification of miRNA and their target genes in Cestrum nocturnum L. and Cestrum diurnum L. in stress responses. PMID:35221570
Analysing miRNA-Target Gene Networks in Inflammatory Bowel Disease and Other Complex Diseases Using Transcriptomic Data. PMID:35205414
Serological profiling reveals hsa-miR-451a as a possible biomarker of anaphylaxis. PMID:35202004
Genome-wide identification of MITE-derived microRNAs and their targets in bread wheat. PMID:35193500
Depth normalization of small RNA sequencing: using data and biology to select a suitable method. PMID:35188574
TRmir: A Comprehensive Resource for Human Transcriptional Regulatory Information of MiRNAs. PMID:35186035
Schwann Cell-Derived Exosomes Induce the Differentiation of Human Adipose-Derived Stem Cells Into Schwann Cells. PMID:35174212
Upregulation of miR-34a-5p, miR-20a-3p and miR-29a-3p by Onconase in A375 Melanoma Cells Correlates with the Downregulation of Specific Onco-Proteins. PMID:35163570
Salivary MicroRNA Signature for Diagnosis of Endometriosis. PMID:35160066
Translocated Legionella pneumophila small RNAs mimic eukaryotic microRNAs targeting the host immune response. PMID:35140216
Exosome-Mediated miR-21 Was Involved in the Promotion of Structural and Functional Recovery Effect Produced by Electroacupuncture in Sciatic Nerve Injury. PMID:35132352
Answer ALS, a large-scale resource for sporadic and familial ALS combining clinical and multi-omics data from induced pluripotent cell lines. PMID:35115730
Systematic Review: microRNAs as Potential Biomarkers in Mild Cognitive Impairment Diagnosis. PMID:35095478
Small RNAs Participate in Plant-Virus Interaction and Their Application in Plant Viral Defense. PMID:35054880
Clues for Improving the Pathophysiology Knowledge for Endometriosis Using Serum Micro-RNA Expression. PMID:35054341
Role of MicroRNAs and Long Non-Coding RNAs in Sarcopenia. PMID:35053303
Whole-Genome Transcript Expression Profiling Reveals Novel Insights into Transposon Genes and Non-Coding RNAs during Atlantic Salmon Seawater Adaptation. PMID:35052999
Preclinical development and phase 1 trial of a novel siRNA targeting lipoprotein(a). PMID:35027752
Altered White Matter and microRNA Expression in a Murine Model Related to Williams Syndrome Suggests That miR-34b/c Affects Brain Development via Ptpru and Dcx Modulation. PMID:35011720
Identification of miRNA-mRNA Regulatory Modules Involved in Lipid Metabolism and Seed Development in a Woody Oil Tree (Camellia oleifera). PMID:35011633
Macrophage Heterogeneity in the Intestinal Cells of Salmon: Hints From Transcriptomic and Imaging Data. PMID:35003123
Roles of Noncoding RNA in Reproduction. PMID:34956326
miR-181a Promotes Multiple Protumorigenic Functions by Targeting TGFβR3. PMID:34890627
MiR-1246 regulates the PI3K/AKT signaling pathway by targeting PIK3AP1 and inhibits thyroid cancer cell proliferation and tumor growth. PMID:34870753
Coordinated regulation of WNT/β-catenin, c-Met, and integrin signalling pathways by miR-193b controls triple negative breast cancer metastatic traits. PMID:34863149
MYCN in Neuroblastoma: "Old Wine into New Wineskins". PMID:34842635
Identification and Characterization of Downy Mildew-Responsive microRNAs in Indian Vitis vinifera by High-Throughput Sequencing. PMID:34829189
Circulating miRNAs associated with bone mineral density in healthy adult baboons. PMID:34799865
MicroRNAs affect GPCR and Ion channel genes needed for influenza replication. PMID:34787540
miR-199a-5p inhibits the expression of ABCB11 in obstructive cholestasis. PMID:34774795
MiR-106b-5p Promotes Malignant Behaviors of Cervical Squamous Cell Carcinoma Cells by Targeting TIMP2. PMID:34767243
Controlling flowering of Medicago sativa (alfalfa) by inducing dominant mutations. PMID:34761872
Global RNA editing identification and characterization during human pluripotent-to-cardiomyocyte differentiation. PMID:34760335
An integrated multi-omic analysis of iPSC-derived motor neurons from C9ORF72 ALS patients. PMID:34746695
Genome-wide in silico analysis of long intergenic non-coding RNAs from rice peduncles at the heading stage. PMID:34744373
ZO-2 favors Hippo signaling, and its re-expression in the steatotic liver by AMPK restores junctional sealing. PMID:34689705
MicroRNAs in the Onset of Schizophrenia. PMID:34685659
Genome sequencing of turmeric provides evolutionary insights into its medicinal properties. PMID:34654884
Circulating miR-19b-3p as a Novel Prognostic Biomarker for Acute Heart Failure. PMID:34612058
Whole Transcriptome Analysis Revealed a Stress Response to Deep Underground Environment Conditions in Chinese Hamster V79 Lung Fibroblast Cells. PMID:34603371
ZBED6 regulates Igf2 expression partially through its regulation of miR483 expression. PMID:34593874
Blood small extracellular vesicles derived miRNAs to differentiate pancreatic ductal adenocarcinoma from chronic pancreatitis. PMID:34586739
Analysis of Nanotoxicity with Integrated Omics and Mechanobiology. PMID:34578701
Differentially Regulated miRNAs and Their Related Molecular Pathways in Lichen Sclerosus. PMID:34571940
Role of MicroRNA in Inflammatory Bowel Disease: Clinical Evidence and the Development of Preclinical Animal Models. PMID:34571853
Altered expression of microRNAs in the rat diaphragm in a model of ventilator-induced diaphragm dysfunction after controlled mechanical ventilation. PMID:34537009
MicroRNAs in Woody Plants. PMID:34531880
Comprehensive transcriptome and methylome analysis delineates the biological basis of hair follicle development and wool-related traits in Merino sheep. PMID:34503498
Detection of an anti-angina therapeutic module in the effective population treated by a multi-target drug Danhong injection: a randomized trial. PMID:34471087
Expression of Bioinformatically Candidate miRNAs including, miR-576-5p, miR-501-3p and miR-3143, Targeting PI3K Pathway in Triple-Negative Breast Cancer. PMID:34466540
Physiological characteristics and miRNA sequencing of two root zones with contrasting ammonium assimilation patterns in Populus. PMID:34455578
Liquid Biopsy for Cancer Cachexia: Focus on Muscle-Derived microRNAs. PMID:34445710
MicroRNA Targeting. PMID:34432276
Circular RNA Circ_0005564 promotes osteogenic differentiation of bone marrow mesenchymal cells in osteoporosis. PMID:34374320
Regulating COX10-AS1 / miR-142-5p / PAICS axis inhibits the proliferation of non-small cell lung cancer. PMID:34323174
A structure-specific small molecule inhibits a miRNA-200 family member precursor and reverses a type 2 diabetes phenotype. PMID:34320373
Identifying potential human and medicinal plant microRNAs against SARS-CoV-2 3'UTR region: A computational genomics assessment. PMID:34311261
Construction and comprehensive analysis of a ceRNA network to reveal potential prognostic biomarkers for lung adenocarcinoma. PMID:34301211
In Silico Target Prediction of Overexpressed microRNAs from LPS-Challenged Zebrafish (Danio rerio) Treated with the Novel Anti-Inflammatory Peptide TnP. PMID:34281170
In Silico Identification and Functional Characterization of Conserved miRNAs in the Genome of Cryptosporidium parvum. PMID:34262265
Secretory microRNA Profiles of Third- and Fourth-Stage Dirofilaria immitis Larvae with Different Macrocyclic Lactone Susceptibility: In Search of Biomarkers for Early Detection of Infection. PMID:34206439
MicroRNA Omics Analysis of Camellia sinesis Pollen Tubes in Response to Low-Temperature and Nitric Oxide. PMID:34201466
Placental extracellular vesicles-associated microRNA-519c mediates endotoxin adaptation in pregnancy. PMID:34181894
Immune System and Neuroinflammation in Idiopathic Parkinson's Disease: Association Analysis of Genetic Variants and miRNAs Interactions. PMID:34149802
Genetic Determinants Highlight the Existence of Shared Etiopathogenetic Mechanisms Characterizing Age-Related Macular Degeneration and Neurodegenerative Disorders. PMID:34135841
Expression Characteristics of microRNA in Pig Umbilical Venous Blood and Umbilical Arterial Blood. PMID:34071966
Genome-wide analysis of primary microRNA expression using H3K36me3 ChIP-seq data. PMID:33995896
In silico analysis suggests the RNAi-enhancing antibiotic enoxacin as a potential inhibitor of SARS-CoV-2 infection. PMID:33986351
Barriers in systemic delivery and preclinical testing of synthetic microRNAs in animal models: an experimental study on miR-215-5p mimic. PMID:33982582
Profiling of Primary and Mature miRNA Expression in Atherosclerosis-Associated Cell Types. PMID:33980036
Application of the targeted sequencing approach reveals the single nucleotide polymorphism (SNP) repertoire in microRNA genes in the pig genome. PMID:33972633
Simultaneous learning of individual microRNA-gene interactions and regulatory comodules. PMID:33971820
Elucidation of the Host Bronchial Lymph Node miRNA Transcriptome Response to Bovine Respiratory Syncytial Virus. PMID:33968129
Non-Coding RNAs Regulate Placental Trophoblast Function and Participate in Recurrent Abortion. PMID:33967782
Global miRNA dosage control of embryonic germ layer specification. PMID:33953397
Comparative Small RNA Profiling and Functional Exploration on Wheat With High- and Low-Cadmium Accumulation. PMID:33936166
miR-190 promotes malignant transformation and progression of human urothelial cells through CDKN1B/p27 inhibition. PMID:33926470
Extracellular Vesicles from Human Adipose-Derived Mesenchymal Stem Cells: A Review of Common Cargos. PMID:33904115
MicroRNA-1 Expression and Function in Hyalomma Anatolicum anatolicum (Acari: Ixodidae) Ticks. PMID:33897444
Plasma miRNA Biomarkers in Limited Volume Samples for Detection of Early-stage Pancreatic Cancer. PMID:33893071
The Chinese mitten crab genome provides insights into adaptive plasticity and developmental regulation. PMID:33888695
Single nucleotide polymorphisms affect miRNA target prediction in bovine. PMID:33882076
Evolution after Whole-Genome Duplication: Teleost MicroRNAs. PMID:33871629
Conserved long-range base pairings are associated with pre-mRNA processing of human genes. PMID:33863890
Integrated Genome-Wide Analysis of MicroRNA Expression Quantitative Trait Loci in Pig Longissimus Dorsi Muscle. PMID:33859669
Current Status of MicroRNAs that Target the Wnt Signaling Pathway in Regulation of Osteogenesis and Bone Metabolism: A Review. PMID:33828067
Distinct miRNA Signatures and Networks Discern Fetal from Adult Erythroid Differentiation and Primary from Immortalized Erythroid Cells. PMID:33807258
Dual Effect of Taxifolin on ZEB2 Cancer Signaling in HepG2 Cells. PMID:33803107
The Causes and Consequences of miR-503 Dysregulation and Its Impact on Cardiovascular Disease and Cancer. PMID:33762949
Interplay between cyclooxygenase‑2 and microRNAs in cancer (Review). PMID:33760116
Expression profiling of Echinococcus multilocularis miRNAs throughout metacestode development in vitro. PMID:33750964
Longitudinal profiling of circulating miRNA during cardiac allograft rejection: a proof-of-concept study. PMID:33713567
Genome-wide identification of microRNAs involved in the somatic embryogenesis of Eucalyptus. PMID:33693674
MicroRNA expression profile in bovine mammary gland parenchyma infected by coagulase-positive or coagulase-negative staphylococci. PMID:33676576
Small Non-coding RNAs Are Dysregulated in Huntington's Disease Transgenic Mice Independently of the Therapeutic Effects of an Environmental Intervention. PMID:33675499
The Multiomics Analyses of Fecal Matrix and Its Significance to Coeliac Disease Gut Profiling. PMID:33671197
Identification of Host Factors Associated with the Development of Equine Herpesvirus Myeloencephalopathy by Transcriptomic Analysis of Peripheral Blood Mononuclear Cells from Horses. PMID:33668216
MicroRNA Mimics or Inhibitors as Antiviral Therapeutic Approaches Against COVID-19. PMID:33638807
Association of MicroRNA Biogenesis Genes Polymorphisms with Risk of Large Artery Atherosclerosis Stroke. PMID:33620673
Identification of Regulatory circRNAs Involved in the Pathogenesis of Acute Myocardial Infarction. PMID:33613625
Negative Regulation of ULK1 by microRNA-106a in Autophagy Induced by a Triple Drug Combination in Colorectal Cancer Cells In Vitro. PMID:33572255
ReCGBM: a gradient boosting-based method for predicting human dicer cleavage sites. PMID:33568063
Techniques for Characterizing Cytomegalovirus-Encoded miRNAs. PMID:33555594
Hypoxia-induced Nur77 activates PI3K/Akt signaling via suppression of Dicer/let-7i-5p to induce epithelial-to-mesenchymal transition. PMID:33537093
Identification of SNPs Associated with Somatic Cell Score in Candidate Genes in Italian Holstein Friesian Bulls. PMID:33535694
The role of miR-29 family in disease. PMID:33529442
A risk progression breast epithelial 3D culture model reveals Cx43/hsa_circ_0077755/miR-182 as a biomarker axis for heightened risk of breast cancer initiation. PMID:33514777
Alteration of Pituitary Tumor Transforming Gene 1 by MicroRNA-186 and 655 Regulates Invasion Ability of Human Oral Squamous Cell Carcinoma. PMID:33498448
MicroRNAs for Virus Pathogenicity and Host Responses, Identified in SARS-CoV-2 Genomes, May Play Roles in Viral-Host Co-Evolution in Putative Zoonotic Host Species. PMID:33467206
The program of renal fibrogenesis is controlled by microRNAs regulating oxidative metabolism. PMID:33465566
MicroRNA profiling of the pig periaqueductal grey (PAG) region reveals candidates potentially related to sex-dependent differences. PMID:33451362
Comprehensive annotation and characterization of planarian tRNA and tRNA-derived fragments (tRFs). PMID:33446492
A genome-wide microRNA screen identifies the microRNA-183/96/182 cluster as a modulator of circadian rhythms. PMID:33443164
Transcriptomic Profiling of Equine and Viral Genes in Peripheral Blood Mononuclear Cells in Horses during Equine Herpesvirus 1 Infection. PMID:33430330
DF-MDA: An effective diffusion-based computational model for predicting miRNA-disease association. PMID:33429082
miRNA expression and interaction with the 3'UTR of FMR1 in FRAXopathy pathogenesis. PMID:33426406
Computationally predicted SARS-COV-2 encoded microRNAs target NFKB, JAK/STAT and TGFB signaling pathways. PMID:33398248
Involvement of miR-190b in Xbp1 mRNA Splicing upon Tocotrienol Treatment. PMID:33396504
Alcoholic and Non-Alcoholic Beer Modulate Plasma and Macrophage microRNAs Differently in a Pilot Intervention in Humans with Cardiovascular Risk. PMID:33379359
PmDNE: Prediction of miRNA-Disease Association Based on Network Embedding and Network Similarity Analysis. PMID:33354569
RNAi Mediated Hypoxia Stress Tolerance in Plants. PMID:33321742
Inhibition of miR-29-3p isoforms via tough decoy suppresses osteoblast function in homeostasis but promotes intermittent parathyroid hormone-induced bone anabolism. PMID:33253931
A developmental stage-specific network approach for studying dynamic co-regulation of transcription factors and microRNAs during craniofacial development. PMID:33234712
Multi-Omics Data Integration in Extracellular Vesicle Biology-Utopia or Future Reality? PMID:33202771
Roles of Non-Coding RNAs in Response to Nitrogen Availability in Plants. PMID:33198163
MiRNAs: A Powerful Tool in Deciphering Gynecological Malignancies. PMID:33194751
Integrative Network Analysis of Predicted miRNA-Targets Regulating Expression of Immune Response Genes in Bovine Coronavirus Infection. PMID:33193717
Bovine hepatic miRNAome profiling and differential miRNA expression analyses between beef steers with divergent feed efficiency phenotypes. PMID:33168877
Blood exosomal micro ribonucleic acid profiling reveals the complexity of hepatocellular carcinoma and identifies potential biomarkers for differential diagnosis. PMID:33133386
New Insights on the Mobility of Viral and Host Non-Coding RNAs Reveal Extracellular Vesicles as Intriguing Candidate Antiviral Targets. PMID:33114356
Importance of microRNAs in Skin Oncogenesis and Their Suitability as Agents and Targets for Topical Therapy. PMID:33080592
CRISPR screening of porcine sgRNA library identifies host factors associated with Japanese encephalitis virus replication. PMID:33057066
Toward Preparing a Knowledge Base to Explore Potential Drugs and Biomedical Entities Related to COVID-19: Automated Computational Approach. PMID:33055059
New approaches to diagnose and target reproductive failure in cattle. PMID:33029221
Placental microRNA expression associates with birthweight through control of adipokines: results from two independent cohorts. PMID:33016211
miR-146a-5p Plays an Oncogenic Role in NSCLC via Suppression of TRAF6. PMID:33015045
Genome-wide identification of low phosphorus responsive microRNAs in two soybean genotypes by high-throughput sequencing. PMID:33009591
Expression differences of miR-142-5p between treatment-naïve chronic myeloid leukemia patients responding and non-responding to imatinib therapy suggest a link to oncogenic ABL2, SRI, cKIT and MCL1 signaling pathways critical for development of therapy resistance. PMID:32999756
Draft Genome of the Common Snapping Turtle, Chelydra serpentina, a Model for Phenotypic Plasticity in Reptiles. PMID:32998935
Identifying metastasis-initiating miRNA-target regulations of colorectal cancer from expressional changes in primary tumors. PMID:32913235
Identification of Biomarkers to Construct a Competing Endogenous RNA Network and Establishment of a Genomic-Clinicopathologic Nomogram to Predict Survival for Children with Rhabdoid Tumors of the Kidney. PMID:32908900
Identification of microRNA-451a as a Novel Circulating Biomarker for Colorectal Cancer Diagnosis. PMID:32908896
miRNA Profiling of Circulating Small Extracellular Vesicles From Subarachnoid Hemorrhage Rats Using Next-Generation Sequencing. PMID:32903819
Non-Coding RNA Databases in Cardiovascular Research. PMID:32887511
miR-205: A Potential Biomedicine for Cancer Therapy. PMID:32854238
An Integrative Omics Approach Reveals Involvement of BRCA1 in Hepatic Metastatic Progression of Colorectal Cancer. PMID:32842712
Whole transcriptome analysis on blue light-induced eye damage. PMID:32821674
Comprehensive Analysis of Non-coding RNA Profiles of Exosome-Like Vesicles From the Protoscoleces and Hydatid Cyst Fluid of Echinococcus granulosus. PMID:32793506
An in-silico approach to study the possible interactions of miRNA between human and SARS-CoV2. PMID:32771962
Distinct miRNA Profile of Cellular and Extracellular Vesicles Released from Chicken Tracheal Cells Following Avian Influenza Virus Infection. PMID:32764349
Transcriptome Characterization of Repressed Embryonic Myogenesis Due to Maternal Calorie Restriction. PMID:32671071
The Roles of CCR7 for the Homing of Memory CD8+ T Cells into Their Survival Niches. PMID:32655968
Machine Learning-Based Ensemble Recursive Feature Selection of Circulating miRNAs for Cancer Tumor Classification. PMID:32635415
Integrative Bioinformatic Analyses of Global Transcriptome Data Decipher Novel Molecular Insights into Cardiac Anti-Fibrotic Therapies. PMID:32630753
Repression of tick microRNA-133 induces organic anion transporting polypeptide expression critical for Anaplasma phagocytophilum survival in the vector and transmission to the vertebrate host. PMID:32614824
Expression profiling of microRNAs and isomiRs in conventional central chondrosarcoma. PMID:32566253
Profiling cytotoxic microRNAs in pediatric and adult glioblastoma cells by high-content screening, identification, and validation of miR-1300. PMID:32555332
Functional Landscape of Dysregulated MicroRNAs in Oral Squamous Cell Carcinoma: Clinical Implications. PMID:32547936
Computational analysis of microRNA-mediated interactions in SARS-CoV-2 infection. PMID:32547891
Extracellular Vesicle-Contained microRNA of C. elegans as a Tool to Decipher the Molecular Basis of Nematode Parasitism. PMID:32523895
Developmental alterations in the transcriptome of three distinct rodent models of schizophrenia. PMID:32497066
Identification of Molecular Mechanisms Related to Pig Fatness at the Transcriptome and miRNAome Levels. PMID:32485856
NATpare: a pipeline for high-throughput prediction and functional analysis of nat-siRNAs. PMID:32463462
Regulation of hepatic microRNAs in response to early stage Echinococcus multilocularis egg infection in C57BL/6 mice. PMID:32442168
Genome-wide integration of microRNA and transcriptomic profiles of differentiating human alveolar epithelial cells. PMID:32432919
Small RNA Sequencing Analysis of miRNA Expression Reveals Novel Insihts into Root Formation under Root Restriction Cultivation in Grapevine (Vitis vinifera L.). PMID:32429227
Genome-wide identification and characterization of microRNAs by small RNA sequencing for low nitrogen stress in potato. PMID:32428011
Clues of in vivo nuclear gene regulation by mitochondrial short non-coding RNAs. PMID:32427953
PathWalks: identifying pathway communities using a disease-related map of integrated information. PMID:32369599
Prediction of miRNA targets by learning from interaction sequences. PMID:32369518
MicroRNA Regulation of the Small Rho GTPase Regulators-Complexities and Opportunities in Targeting Cancer Metastasis. PMID:32353968
PathME: pathway based multi-modal sparse autoencoders for clustering of patient-level multi-omics data. PMID:32299344
MicroRNA-92a-3p enhances functional recovery and suppresses apoptosis after spinal cord injury via targeting phosphatase and tensin homolog. PMID:32297644
Identification and application of piwi-interacting RNAs from seminal plasma exosomes in Cynoglossus semilaevis. PMID:32293248
Analysis of microRNAs and their targets from onion (Allium cepa) using genome survey sequences (GSS) and expressed sequence tags (ESTs). PMID:32256010
Cell-mediated and serology-based tests for Mycobacterium ulcerans disease: A systematic review and meta-analysis. PMID:32251470
The Encystment-Related MicroRNAs and Its Regulation Molecular Mechanism in Pseudourostyla cristata Revealed by High Throughput Small RNA Sequencing. PMID:32225121
Model-Based Integration Analysis Revealed Presence of Novel Prognostic miRNA Targets and Important Cancer Driver Genes in Triple-Negative Breast Cancers. PMID:32182819
Genome-Wide microRNA Profiling Using Oligonucleotide Microarray Reveals Regulatory Networks of microRNAs in Nicotiana benthamiana During Beet Necrotic Yellow Vein Virus Infection. PMID:32178444
Plasma Exosome-derived MicroRNAs as Novel Biomarkers of Traumatic Brain Injury in Rats. PMID:32174774
The Role of MicroRNAs in Muscle Tissue Development in Beef Cattle. PMID:32168744
Dynamic changes in the expression pattern of miRNAs and associated target genes during coconut somatic embryogenesis. PMID:32166498
Role of non-coding RNA networks in leukemia progression, metastasis and drug resistance. PMID:32164715
Genomic Identification of RNA Editing Through Integrating Omics Datasets and the Clinical Relevance in Hepatocellular Carcinoma. PMID:32117713
Identification of Blood Circular RNAs as Potential Biomarkers for Acute Ischemic Stroke. PMID:32116524
The conserved microRNA miR-34 regulates synaptogenesis via coordination of distinct mechanisms in presynaptic and postsynaptic cells. PMID:32107390
Identification of microRNAs in developing wheat grain that are potentially involved in regulating grain characteristics and the response to nitrogen levels. PMID:32103721
Combining feature selection and shape analysis uncovers precise rules for miRNA regulation in Huntington's disease mice. PMID:32093602
Comparison of Proangiogenic Effects of Adipose-Derived Stem Cells and Foreskin Fibroblast Exosomes on Artificial Dermis Prefabricated Flaps. PMID:32089706
Integrated analysis identifying long non-coding RNAs (lncRNAs) for competing endogenous RNAs (ceRNAs) network-regulated palatal shelf fusion in the development of mouse cleft palate. PMID:32042778
Transcriptome analysis reveals the roles of stem nodes in cadmium transport to rice grain. PMID:32028884
miRNA repertoire and host immune factor regulation upon avian coronavirus infection in eggs. PMID:32025807
RATEmiRs: the rat atlas of tissue-specific and enriched miRNAs for discerning baseline expression exclusivity of candidate biomarkers. PMID:32009518
MicroRNA-384 Inhibits the Progression of Papillary Thyroid Cancer by Targeting PRKACB. PMID:31998791
A comprehensive analysis for associations between multiple microRNAs and prognosis of osteosarcoma patients. PMID:31998559
A novel computational approach to the silencing of Sugarcane Bacilliform Guadeloupe A Virus determines potential host-derived MicroRNAs in sugarcane (Saccharum officinarum L.). PMID:31976180
Small RNA Bidirectional Crosstalk During the Interaction Between Wheat and Zymoseptoria tritici. PMID:31969895
Intragenic MicroRNAs Autoregulate Their Host Genes in Both Direct and Indirect Ways-A Cross-Species Analysis. PMID:31963421
The Asthma-associated PER1-like domain-containing protein 1 (PERLD1) Haplotype Influences Soluble Glycosylphosphatidylinositol Anchor Protein (sGPI-AP) Levels in Serum and Immune Cell Proliferation. PMID:31959860
miRNAs as Influencers of Cell-Cell Communication in Tumor Microenvironment. PMID:31952362
Effect of miR-483-5p on apoptosis of lung cancer cells through targeting of RBM5. PMID:31938444
Circulating miR-141 and miR-375 are associated with treatment outcome in metastatic castration resistant prostate cancer. PMID:31937854
Maternal Recognition of Pregnancy in the Horse: Are MicroRNAs the Secret Messengers? PMID:31936511
Deep neural networks for human microRNA precursor detection. PMID:31931701
DBMDA: A Unified Embedding for Sequence-Based miRNA Similarity Measure with Applications to Predict and Validate miRNA-Disease Associations. PMID:31931344
MiR-195-5p Inhibits Proliferation and Induces Apoptosis of Non-Small Cell Lung Cancer Cells by Targeting CEP55. PMID:31920335
A network view of microRNA and gene interactions in different pathological stages of colon cancer. PMID:31888617
Robust profiling of microRNAs and isomiRs in human plasma exosomes across 46 individuals. PMID:31882820
Human genetics and neuropathology suggest a link between miR-218 and amyotrophic lateral sclerosis pathophysiology. PMID:31852800
Expression and Role of MicroRNA-663b in Childhood Acute Lymphocytic Leukemia and its Mechanism. PMID:31844676
Small RNAs in parasitic nematodes - forms and functions. PMID:31843030
The coding and non-coding transcriptional landscape of subependymal giant cell astrocytomas. PMID:31834371
Up-regulation of miR-let7a-5p Leads to Decreased Expression of ABCC2 in Obstructive Cholestasis. PMID:31832574
DNA methylation directs microRNA biogenesis in mammalian cells. PMID:31827083
DeepMiR2GO: Inferring Functions of Human MicroRNAs Using a Deep Multi-Label Classification Model. PMID:31801264
Regulatory networks of circRNAs related to transcription factors in Populus euphratica Oliv. heteromorphic leaves. PMID:31790153
Microbiome Multi-Omics Network Analysis: Statistical Considerations, Limitations, and Opportunities. PMID:31781153
MicroRNAs Involved in Carcinogenesis, Prognosis, Therapeutic Resistance and Applications in Human Triple-Negative Breast Cancer. PMID:31766744
Secondary Structural Model of Human MALAT1 Reveals Multiple Structure-Function Relationships. PMID:31717552
miRNAs derived from cancer-associated fibroblasts in colorectal cancer. PMID:31702390
Next-Generation Sequence Databases: RNA and Genomic Informatics Resources for Plants. PMID:31690707
Transcription Factors Targeted by miRNAs Regulating Smooth Muscle Cell Growth and Intimal Thickening after Vascular Injury. PMID:31683712
DNA Replication Inhibitor Geminin and Retinoic Acid Signaling Participate in Complex Interactions Associated With Pluripotency. PMID:31659113
Integrated exosomal miRNA and transcriptome analysis of brain microvascular endothelial cells in spontaneously hypertensive rats. PMID:31628439
Integrated Analysis of Small RNA, Transcriptome and Degradome Sequencing Provides New Insights into Floral Development and Abscission in Yellow Lupine (Lupinus luteus L.). PMID:31623090
Integrative Analysis of miRNA and mRNA Expression Profiles Associated With Human Atrial Aging. PMID:31607954
Intracellular MicroRNA imaging using telomerase-catalyzed FRET ratioflares with signal amplification. PMID:31588279
Plasma extracellular vesicle microRNAs for pulmonary ground-glass nodules. PMID:31579436
miR-183 inhibits microglia activation and expression of inflammatory factors in rats with cerebral ischemia reperfusion via NF-κB signaling pathway. PMID:31572505
RNAseq analysis reveals drought-responsive molecular pathways with candidate genes and putative molecular markers in root tissue of wheat. PMID:31558740
Epigenetic Regulation of Innate Immunity by microRNAs. PMID:31557989
Transcriptome characterization and expression profiling in chestnut cultivars resistant or susceptible to the gall wasp Dryocosmus kuriphilus. PMID:31506717
A Complete Pipeline for Isolating and Sequencing MicroRNAs, and Analyzing Them Using Open Source Tools. PMID:31498311
Protocols for the Analysis of microRNA Expression, Biogenesis, and Function in Immune Cells. PMID:31483103
Oxygen-induced circRNA profiles and coregulatory networks in a retinopathy of prematurity mouse model. PMID:31452702
Identification of miRNAs involved in fruit ripening by deep sequencing of Olea europaea L. transcriptome. PMID:31437230
Differentially Expressed MiRNAs and tRNA Genes Affect Host Homeostasis During Highly Pathogenic Porcine Reproductive and Respiratory Syndrome Virus Infections in Young Pigs. PMID:31428130
Inventory of European Sea Bass (Dicentrarchus labrax) sncRNAs Vital During Early Teleost Development. PMID:31404269
Differential microRNA Expression in Porcine Endometrium Involved in Remodeling and Angiogenesis That Contributes to Embryonic Implantation. PMID:31402929
p85α Inactivates MMP-2 and Suppresses Bladder Cancer Invasion by Inhibiting MMP-14 Transcription and TIMP-2 Degradation. PMID:31401412
MicroRNA Sequencing Reveals the Effect of Different Levels of Non-Fibrous Carbohydrate/Neutral Detergent Fiber on Rumen Development in Calves. PMID:31357699
MicroRNA-transcriptome networks in whole blood and monocytes of women undergoing preterm labour. PMID:31342622
Ensemble of decision tree reveals potential miRNA-disease associations. PMID:31329575
miR‑195 suppresses metastasis and angiogenesis of squamous cell lung cancer by inhibiting the expression of VEGF. PMID:31322197
Regulation of cytochrome P450 expression by microRNAs and long noncoding RNAs: Epigenetic mechanisms in environmental toxicology and carcinogenesis. PMID:31305208
MicroRNA profiles in B-cell non-Hodgkin lymphoma. PMID:31263393
HNRNPA2/B1 is upregulated in endocrine-resistant LCC9 breast cancer cells and alters the miRNA transcriptome when overexpressed in MCF-7 cells. PMID:31263129
MicroRNA Regulation of Epigenetic Modifiers in Breast Cancer. PMID:31252590
miRBaseMiner, a tool for investigating miRBase content. PMID:31251108
Lineage-Specific Evolved MicroRNAs Regulating NB-LRR Defense Genes in Triticeae. PMID:31248042
Several phased siRNA annotation methods can frequently misidentify 24 nucleotide siRNA-dominated PHAS loci. PMID:31245701
Identification and characterization of Populus microRNAs in response to plant growth-promoting endophytic Streptomyces sp. SSD49. PMID:31222457
Correlation of miRNA expression with intensity of neuropathic pain in man. PMID:31218919
Giardia lamblia miRNAs as a new diagnostic tool for human giardiasis. PMID:31206518
MicroRNA heterogeneity in melanoma progression. PMID:31163254
A comparison of RNA extraction and sequencing protocols for detection of small RNAs in plasma. PMID:31159762
Interpreting the MicroRNA-15/107 family: interaction identification by combining network based and experiment supported approach. PMID:31151434
Induced androgenetic development in rainbow trout and transcriptome analysis of irradiated eggs. PMID:31147623
Dual Epigenetic Regulation of ERα36 Expression in Breast Cancer Cells. PMID:31146345
Analysis of miRNAs Targeted Storage Regulatory Genes during Soybean Seed Development Based on Transcriptome Sequencing. PMID:31142023
Bioinformatics Resource Manager: a systems biology web tool for microRNA and omics data integration. PMID:31101000
MicroRNA26 attenuates vascular smooth muscle maturation via endothelial BMP signalling. PMID:31091229
anamiR: integrated analysis of MicroRNA and gene expression profiling. PMID:31088348
ALG-1 Influences Accurate mRNA Splicing Patterns in the Caenorhabditis elegans Intestine and Body Muscle Tissues by Modulating Splicing Factor Activities. PMID:31073019
miR-27b-mediated suppression of aquaporin-11 expression in hepatocytes reduces HCV genomic RNA levels but not viral titers. PMID:31046802
MicroRNA‑576‑3p inhibits the migration and proangiogenic abilities of hypoxia‑treated glioma cells through hypoxia‑inducible factor‑1α. PMID:31017266
Exosomal miRNAs as Novel Pharmacodynamic Biomarkers for Cancer Chemopreventive Agent Early Stage Treatments in Chemically Induced Mouse Model of Lung Squamous Cell Carcinoma. PMID:30987362
Identification of conserved miRNA molecules in einkorn wheat (Triticum monococcum subsp. monococcum) by using small RNA sequencing analysis. PMID:30983871
Comparative analysis of microRNA profiles between wild and cultured Haemaphysalis longicornis (Acari, Ixodidae) ticks. PMID:30916642
High levels of PIWI-interacting RNAs are present in the small RNA landscape of prostate epithelium from vitamin D clinical trial specimens. PMID:30905091
Microbe and host interaction in gastrointestinal homeostasis. PMID:30900006
Seminal Plasma Exosomes: Promising Biomarkers for Identification of Male and Pseudo-Males in Cynoglossus semilaevis. PMID:30863906
Comparative genomics reveals origin of MIR159A-MIR159B paralogy, and complexities of PTGS interaction between miR159 and target GA-MYBs in Brassicaceae. PMID:30840147
Long Non-coding RNAs Coordinate Developmental Transitions and Other Key Biological Processes in Grapevine. PMID:30837504
Interplay between miRNAs and host genes and their role in cancer. PMID:30785618
Alterations in tissue microRNA after heat stress in the conscious rat: potential biomarkers of organ-specific injury. PMID:30770735
Small RNAs in Rat Sperm Are a Predictive and Sensitive Biomarker of Exposure to the Testicular Toxicant Ethylene Glycol Monomethyl Ether. PMID:30768127
Comprehensive Investigation of miRNome Identifies Novel Candidate miRNA-mRNA Interactions Implicated in T-Cell Acute Lymphoblastic Leukemia. PMID:30763910
Bioinformatic analysis of long-lasting transcriptional and translational changes in the basolateral amygdala following acute stress. PMID:30629705
Interpreting Non-coding Genetic Variation in Multiple Sclerosis Genome-Wide Associated Regions. PMID:30619471
A miRNA Host Response Signature Accurately Discriminates Acute Respiratory Infection Etiologies. PMID:30619110
Human antigen R and drug resistance in tumors. PMID:30612309
The miR164-dependent regulatory pathway in developing maize seed. PMID:30607602
Network Profiling of Brain-Expressed X-Chromosomal MicroRNA Genes Implicates Shared Key MicroRNAs in Intellectual Disability. PMID:30604382
miRBaseConverter: an R/Bioconductor package for converting and retrieving miRNA name, accession, sequence and family information in different versions of miRBase. PMID:30598108
MicroRNA dysregulational synergistic network: discovering microRNA dysregulatory modules across subtypes in non-small cell lung cancers. PMID:30577741
PinMol: Python application for designing molecular beacons for live cell imaging of endogenous mRNAs. PMID:30573696
Noncoding RNAs regulating cardiac muscle mass. PMID:30571279
iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data. PMID:30567491
Large-scale validation of miRNAs by disease association, evolutionary conservation and pathway activity. PMID:30567465
Association of a potential functional mir-520f rs75598818 G>A polymorphism with breast cancer. PMID:30555079
Cooperative and Independent Functions of the miR-23a~27a~24-2 Cluster in Bovine Adipocyte Adipogenesis. PMID:30544847
Sequencing the mosaic genome of Brahman cattle identifies historic and recent introgression including polled. PMID:30531891
Dysregulated miR-155 and miR-125b Are Related to Impaired B-cell Responses in Down Syndrome. PMID:30515165
miRTrace reveals the organismal origins of microRNA sequencing data. PMID:30514392
Distinct communication patterns of trophoblastic miRNA among the maternal-placental-fetal compartments. PMID:30501878
Identification and Characterization of MicroRNAs Associated with Somatic Copy Number Alterations in Cancer. PMID:30501131
Genome-wide analysis of RNAs associated with Populus euphratica Oliv. heterophyll morphogenesis. PMID:30467318
RATEmiRs: the rat atlas of tissue-specific and enriched miRNAs database. PMID:30453895
Exercise Training-Induced Changes in MicroRNAs: Beneficial Regulatory Effects in Hypertension, Type 2 Diabetes, and Obesity. PMID:30445764
Mapping the Pax6 3' untranslated region microRNA regulatory landscape. PMID:30442116
Novel Human miRNA-Disease Association Inference Based on Random Forest. PMID:30439645
miRBase: from microRNA sequences to function. PMID:30423142
In silico identification and characterization of a diverse subset of conserved microRNAs in bioenergy crop Arundo donax L. PMID:30420632
Biogenesis, Stabilization, and Transport of microRNAs in Kidney Health and Disease. PMID:30400314
Integrating Transcriptome and Experiments Reveals the Anti-diabetic Mechanism of Cyclocarya paliurus Formula. PMID:30388616
The Lhx1-Ldb1 complex interacts with Furry to regulate microRNA expression during pronephric kidney development. PMID:30375416
Identification of eight key miRNAs associated with renal cell carcinoma: A meta-analysis. PMID:30344735
Control of Immunoregulatory Molecules by miRNAs in T Cell Activation. PMID:30319616
Uncovering association networks through an eQTL analysis involving human miRNAs and lincRNAs. PMID:30301969
Predicting microRNA targeting efficacy in Drosophila. PMID:30286781
Identification of six key miRNAs associated with breast cancer through screening large-scale microarray data. PMID:30250531
Expression Profile of Glossina pallidipes MicroRNAs During Symptomatic and Asymptomatic Infection With Glossina pallidipes Salivary Gland Hypertrophy Virus (Hytrosavirus). PMID:30233523
Comprehensive RNA-Sequencing Analysis in Serum and Muscle Reveals Novel Small RNA Signatures with Biomarker Potential for DMD. PMID:30219269
Dual-layer transposon repression in heads of Drosophila melanogaster. PMID:30217866
Predicting microRNA-disease associations using bipartite local models and hubness-aware regression. PMID:30196756
Impact of miRNA-mRNA Profiling and Their Correlation on Medulloblastoma Tumorigenesis. PMID:30195786
Genome-wide profiling of sRNAs in the Verticillium dahliae-infected Arabidopsis roots. PMID:30181922
Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries. PMID:30180884
Crosstalk between MicroRNAs and Autophagy in Adult Neurogenesis: Implications for Neurodegenerative Disorders. PMID:30151343
Investigating the Molecular Mechanism of Aqueous Extract of Cyclocarya paliurus on Ameliorating Diabetes by Transcriptome Profiling. PMID:30140229
miR-320b Is Down-Regulated in Psoriasis and Modulates Keratinocyte Proliferation by Targeting AKT3. PMID:30136020
Identification and verification of differentially expressed microRNAs and their target genes for the diagnosis of esophageal cancer. PMID:30127973
A regulation loop between Nrf1α and MRTF-A controls migration and invasion in MDA-MB-231 breast cancer cells. PMID:30106093
Identification of MicroRNAs and Their Target Genes Associated with Ovarian Development in Black Tiger Shrimp (Penaeus monodon) Using High-Throughput Sequencing. PMID:30072718
d Rhamnose β-hederin reverses chemoresistance of breast cancer cells by regulating exosome-mediated resistance transmission. PMID:30061173
High resolution annotation of zebrafish transcriptome using long-read sequencing. PMID:30061115
Identification of virus-encoded microRNAs in divergent Papillomaviruses. PMID:30048533
Genome-wide identification, expression profiling, and target gene analysis of microRNAs in the Onion thrips, Thrips tabaci Lindeman (Thysanoptera: Thripidae), vectors of tospoviruses (Bunyaviridae). PMID:30038744
MicroRNA-539 inhibits colorectal cancer progression by directly targeting SOX4. PMID:30013665
Identification and annotation of newly conserved microRNAs and their targets in wheat (Triticum aestivum L.). PMID:29990369
A comprehensive review of web-based resources of non-coding RNAs for plant science research. PMID:29989090
Pain-Associated Transcriptome Changes in Synovium of Knee Osteoarthritis Patients. PMID:29973527
TGF-β signaling alters H4K20me3 status via miR-29 and contributes to cellular senescence and cardiac aging. PMID:29967491
Using microRNA Networks to Understand Cancer. PMID:29949872
Circulating microRNAs and prediction of asthma exacerbation in childhood asthma. PMID:29940952
ARMOUR - A Rice miRNA: mRNA Interaction Resource. PMID:29868062
The Glucose-Regulated MiR-483-3p Influences Key Signaling Pathways in Cancer. PMID:29867024
MicroRNA-17 and the prognosis of human carcinomas: a systematic review and meta-analysis. PMID:29858404
Motif scraper: a cross-platform, open-source tool for identifying degenerate nucleotide motif matches in FASTA files. PMID:29850891
Comprehensive identification of microRNA arm selection preference in lung cancer: miR-324-5p and -3p serve oncogenic functions in lung cancer. PMID:29844840
The small RNA complement of adult Schistosoma haematobium. PMID:29813122
Highly expressed placental miRNAs control key biological processes in human cancer cell lines. PMID:29805755
Exploration of the molecular mechanisms of cervical cancer based on mRNA expression profiles and predicted microRNA interactions. PMID:29805632
Response to Persistent ER Stress in Plants: A Multiphasic Process That Transitions Cells from Prosurvival Activities to Cell Death. PMID:29802214
Microarray analysis of miRNA expression profiles following whole body irradiation in a mouse model. PMID:29799276
Estrogen receptor β promotes renal cell carcinoma progression via regulating LncRNA HOTAIR-miR-138/200c/204/217 associated CeRNA network. PMID:29789714
Integration of isothermal amplification with quantum dot-based fluorescence resonance energy transfer for simultaneous detection of multiple microRNAs. PMID:29780556
miR-MaGiC improves quantification accuracy for small RNA-seq. PMID:29764489
Assessing the functional association of intronic miRNAs with their host genes. PMID:29752351
Genome-Wide Identification of MicroRNAs in Response to Cadmium Stress in Oilseed Rape (Brassica napus L.) Using High-Throughput Sequencing. PMID:29748489
Identification of miRNAs in cervical mucus as a novel diagnostic marker for cervical neoplasia. PMID:29728572
Application values of miR-194 and miR-29 in the diagnosis and prognosis of gastric cancer. PMID:29725366
Cyclin D1-mediated microRNA expression signature predicts breast cancer outcome. PMID:29721077
Identification of novel circulatory microRNA signatures linked to patients with ischemic stroke. PMID:29701837
Integrated Analysis Reveals That miR-193b, miR-671, and TREM-1 Correlate With a Good Response to Treatment of Human Localized Cutaneous Leishmaniasis Caused by Leishmania braziliensis. PMID:29670621
Examining the Genetic Background of Porcine Muscle Growth and Development Based on Transcriptome and miRNAome Data. PMID:29659518
MicroRNA MultiTool: A Software for Identifying Modified and Unmodified Human microRNA Using Mass Spectrometry. PMID:29657285
High Percentage of Isomeric Human MicroRNA and Their Analytical Challenges. PMID:29657271
Lateral Root Development in Potato Is Mediated by Stu-mi164 Regulation of NAC Transcription Factor. PMID:29651294
miRNA Long-Term Response to Early Metabolic Environmental Challenge in Hypothalamic Arcuate Nucleus. PMID:29643765
Comprehensive analysis of blood cells and plasma identifies tissue-specific miRNAs as potential novel circulating biomarkers in cattle. PMID:29636028
Genome-wide identification, putative functionality and interactions between lncRNAs and miRNAs in Brassica species. PMID:29563515
The Oncogenic Relevance of miR-17-92 Cluster and Its Paralogous miR-106b-25 and miR-106a-363 Clusters in Brain Tumors. PMID:29547527
Identification and characterization of microRNAs in tree peony during chilling induced dormancy release by high-throughput sequencing. PMID:29540706
Dysregulation of miRNA and its potential therapeutic application in schizophrenia. PMID:29529357
Metastasis-associated miR-23a from nasopharyngeal carcinoma-derived exosomes mediates angiogenesis by repressing a novel target gene TSGA10. PMID:29520105
Wolbachia-mediated virus blocking in mosquito cells is dependent on XRN1-mediated viral RNA degradation and influenced by viral replication rate. PMID:29494679
Association of Genetic Variants of Small Non-Coding RNAs with Survival in Colorectal Cancer. PMID:29483812
MicroRNA meta-signature of oral cancer: evidence from a meta-analysis. PMID:29482431
Expression and function of microRNA-9 in the mid-hindbrain area of embryonic chick. PMID:29471810
Functional Redundancy of DICER Cofactors TARBP2 and PRKRA During Murine Embryogenesis Does Not Involve miRNA Biogenesis. PMID:29467169
Deciphering microRNA targets in pancreatic cancer using miRComb R package. PMID:29464088
The miRNA Mirage: How Close Are We to Finding a Non-Invasive Diagnostic Biomarker in Endometriosis? A Systematic Review. PMID:29463003
Testicular piRNA profile comparison between successful and unsuccessful micro-TESE retrieval in NOA patients. PMID:29460056
MiR-27a-5p Increases Steer Fat Deposition Partly by Targeting Calcium-sensing Receptor (CASR). PMID:29445089
microRNA expression profiles of scar and normal tissue from patients with posterior urethral stricture caused by pelvic fracture urethral distraction defects. PMID:29436608
Integrated micro/messenger RNA regulatory networks in essential thrombocytosis. PMID:29420626
Mirna biogenesis pathway is differentially regulated during adipose derived stromal/stem cell differentiation. PMID:29411671
Clinical-pathological study on β-APP, IL-1β, GFAP, NFL, Spectrin II, 8OHdG, TUNEL, miR-21, miR-16, miR-92 expressions to verify DAI-diagnosis, grade and prognosis. PMID:29402984
Oncogenic and Tumor-Suppressive Roles of MicroRNAs with Special Reference to Apoptosis: Molecular Mechanisms and Therapeutic Potential. PMID:29388067
MicroRNA-138 targets SP1 to inhibit the proliferation, migration and invasion of hepatocellular carcinoma cells. PMID:29387246
Predictive relevance of miR-34a, miR-224 and miR-342 in patients with advanced squamous cell carcinoma of the lung undergoing palliative chemotherapy. PMID:29387235
The regulatory network analysis of long noncoding RNAs in human colorectal cancer. PMID:29374362
miR-137 regulates ferroptosis by targeting glutamine transporter SLC1A5 in melanoma. PMID:29348676
Non-coding RNAs and plant male sterility: current knowledge and future prospects. PMID:29332167
MicroRNA signatures of endogenous Huntingtin CAG repeat expansion in mice. PMID:29324753
Integrative analysis reveals disrupted pathways regulated by microRNAs in cancer. PMID:29294105
About miRNAs, miRNA seeds, target genes and target pathways. PMID:29291020
Prostate-specific PTen deletion in mice activates inflammatory microRNA expression pathways in the epithelium early in hyperplasia development. PMID:29284790
Small RNA profiling for identification of miRNAs involved in regulation of saponins biosynthesis in Chlorophytum borivilianum. PMID:29281971
MicroRNAs regulate key cell survival pathways and mediate chemosensitivity during progression of diffuse large B-cell lymphoma. PMID:29242506
RNAStructuromeDB: A genome-wide database for RNA structural inference. PMID:29222504
Mir-513a-3p contributes to the controlling of cellular migration processes in the A549 lung tumor cells by modulating integrin β-8 expression. PMID:29204818
The phenotypic and molecular assessment of the non-conserved Arabidopsis MICRORNA163/S-ADENOSYL-METHYLTRANSFERASE regulatory module during biotic stress. PMID:29196849
High throughput deep sequencing reveals the important roles of microRNAs during sweetpotato storage at chilling temperature. PMID:29185497
Identification of metastasis-associated microRNAs in serum from rectal cancer patients. PMID:29163812
MicroRNA-Mediated Regulation of ITGB3 and CHL1 Is Implicated in SSRI Action. PMID:29163031
Tumor-suppressive roles of ΔNp63β-miR-205 axis in epithelial-mesenchymal transition of oral squamous cell carcinoma via targeting ZEB1 and ZEB2. PMID:29150940
Long 3'UTR of Nurr1 mRNAs is targeted by miRNAs in mesencephalic dopamine neurons. PMID:29145474
MicroRNAs as a novel class of diagnostic biomarkers for the detection of osteosarcoma: a meta-analysis. PMID:29138575
PAGER 2.0: an update to the pathway, annotated-list and gene-signature electronic repository for Human Network Biology. PMID:29126216
Identification and expression profiling of microRNAs involved in the stigma exsertion under high-temperature stress in tomato. PMID:29096602
miR156 switches on vegetative phase change under the regulation of redox signals in apple seedlings. PMID:29079841
Differential expression of microRNA let-7b-5p regulates burn-induced hyperglycemia. PMID:29069833
In silico analysis of the grapefruit sRNAome, transcriptome and gene regulation in response to CTV-CDVd co-infection. PMID:29058618
MicroRNA-Directed Cancer Therapies: Implications in Melanoma Intervention. PMID:29054858
Identification of functionally important microRNAs from rice inflorescence at heading stage of a qDTY4.1-QTL bearing Near Isogenic Line under drought conditions. PMID:29045473
Mirnovo: genome-free prediction of microRNAs from small RNA sequencing data and single-cells using decision forests. PMID:29036314
Characterization of microRNAs of Beta macrocarpa and their responses to Beet necrotic yellow vein virus infection. PMID:29036205
MicroRNAs-Based Inter-Domain Communication between the Host and Members of the Gut Microbiome. PMID:29021788
Genome-wide Analysis of HDAC Inhibitor-mediated Modulation of microRNAs and mRNAs in B Cells Induced to Undergo Class-switch DNA Recombination and Plasma Cell Differentiation. PMID:28994753
miR‑494 inhibits cell proliferation and metastasis via targeting of CDK6 in osteosarcoma. PMID:28990071
Identification of genome-wide non-canonical spliced regions and analysis of biological functions for spliced sequences using Read-Split-Fly. PMID:28984182
The GBAP1 pseudogene acts as a ceRNA for the glucocerebrosidase gene GBA by sponging miR-22-3p. PMID:28983119
Computational Identification of MicroRNAs and Their Transcript Target(s) in Field Mustard (Brassica rapa L.). PMID:28959349
Identification of drought-responsive microRNAs in tomato using high-throughput sequencing. PMID:28956210
CRISPR-Cas9 Based Genome Editing Reveals New Insights into MicroRNA Function and Regulation in Rice. PMID:28955376
Genome-wide identification of leaf abscission associated microRNAs in sugarcane (Saccharum officinarum L.). PMID:28946845
Two-tailed RT-qPCR: a novel method for highly accurate miRNA quantification. PMID:28911110
MicroRNAs Involvement in Renal Pathophysiology: A Bird's Eye View. PMID:28904427
miR-150 Regulates Memory CD8 T Cell Differentiation via c-Myb. PMID:28903040
Effects of anticholinergic agent on miRNA profiles and transcriptomes in a murine model of allergic rhinitis. PMID:28901404
Genome-wide miRNA response to anacardic acid in breast cancer cells. PMID:28886127
Animal Models to Study MicroRNA Function. PMID:28882225
Overexpression of Exportin-5 Overrides the Inhibitory Effect of miRNAs Regulation Control and Stabilize Proteins via Posttranslation Modifications in Prostate Cancer. PMID:28881308
Onset of human preterm and term birth is related to unique inflammatory transcriptome profiles at the maternal fetal interface. PMID:28879060
Transposable Element Misregulation Is Linked to the Divergence between Parental piRNA Pathways in Drosophila Hybrids. PMID:28854624
Uncovering robust patterns of microRNA co-expression across cancers using Bayesian Relevance Networks. PMID:28817636
A Circulating MicroRNA Signature Serves as a Diagnostic and Prognostic Indicator in Sarcoidosis. PMID:28812922
miR-187 inhibits tumor growth and invasion by directly targeting MAPK12 in osteosarcoma. PMID:28810556
Expression and prognostic significance of miR-375 and miR-221 in liver cancer. PMID:28781668
SNPs, linkage disequilibrium, and chronic mountain sickness in Tibetan Chinese. PMID:28770234
Tough decoy targeting of predominant let-7 miRNA species in adult human hematopoietic cells. PMID:28768505
Improving the Quality of Positive Datasets for the Establishment of Machine Learning Models for pre-microRNA Detection. PMID:28753538
Acute resistance exercise modulates microRNA expression profiles: Combined tissue and circulatory targeted analyses. PMID:28750051
Circulating microRNAs and association with methacholine PC20 in the Childhood Asthma Management Program (CAMP) cohort. PMID:28749975
Profiling and characterization of a longissimus dorsi muscle microRNA dataset from an F2 Duroc × Pietrain pig resource population. PMID:28736700
Targeted regulation of MiR-98 on E2F1 increases chemosensitivity of leukemia cells K562/A02. PMID:28721074
Combining Supervised and Unsupervised Learning for Improved miRNA Target Prediction. PMID:28715336
Peptide Nucleic Acids as miRNA Target Protectors for the Treatment of Cystic Fibrosis. PMID:28698463
MiR-155 enhances phagocytic activity of β-thalassemia/HbE monocytes via targeting of BACH1. PMID:28685309
Extrapolative microRNA precursor based SSR mining from tea EST database in respect to agronomic traits. PMID:28683768
MicroRNA profiling in gingival crevicular fluid of periodontitis-a pilot study. PMID:28680811
MicroRNA profiling provides insights into post-transcriptional regulation of gene expression in chickpea root apex under salinity and water deficiency. PMID:28680071
miR‑199a‑3p is involved in the pathogenesis and progression of diabetic neuropathy through downregulation of SerpinE2. PMID:28677735
miRNome landscape analysis reveals a 30 miRNA core in retinoblastoma. PMID:28668075
MicroRNA‑21 promotes neurite outgrowth by regulating PDCD4 in a rat model of spinal cord injury. PMID:28656242
Small RNA Activity in Archeological Barley Shows Novel Germination Inhibition in Response to Environment. PMID:28655202
Profiling of drought-responsive microRNA and mRNA in tomato using high-throughput sequencing. PMID:28651543
Identification, Characterization, and Functional Validation of Drought-responsive MicroRNAs in Subtropical Maize Inbreds. PMID:28626466
Dynamic monitoring of circulating microRNAs as a predictive biomarker for the diagnosis and recurrence of papillary thyroid carcinoma. PMID:28599426
Analysis of Microarray-Identified Genes and MicroRNAs Associated with Idiopathic Pulmonary Fibrosis. PMID:28588348
Genome-Wide Identification and Characterization of Salinity Stress-Responsive miRNAs in Wild Emmer Wheat (Triticum turgidum ssp. dicoccoides). PMID:28587281
A sketch of known and novel MYCN-associated miRNA networks in neuroblastoma. PMID:28586032
Fixed differences in the 3'UTR of buffalo PRNP gene provide binding sites for miRNAs post-transcriptional regulation. PMID:28545018
Dysregulation of miRNA Expression in Cancer Associated Fibroblasts (CAFs) and Its Consequences on the Tumor Microenvironment. PMID:28538690
Quantification of microRNAs directly from body fluids using a base-stacking isothermal amplification method in a point-of-care device. PMID:28536858
In situ Detection of MicroRNAs: The Art of MicroRNA Research in Human Diseases. PMID:28529819
Cancer-derived Circulating MicroRNAs Promote Tumor Angiogenesis by Entering Dendritic Cells to Degrade Highly Complementary MicroRNAs. PMID:28529626
Dysregulation of miR-638 in hepatocellular carcinoma and its clinical significance. PMID:28529597
MiR-30b Attenuates Neuropathic Pain by Regulating Voltage-Gated Sodium Channel Nav1.3 in Rats. PMID:28529474
MiR-106b and miR-93 regulate cell progression by suppression of PTEN via PI3K/Akt pathway in breast cancer. PMID:28518139
De novo Transcriptome Profiling of Flowers, Flower Pedicels and Pods of Lupinus luteus (Yellow Lupine) Reveals Complex Expression Changes during Organ Abscission. PMID:28512462
Whole exome sequencing of a consanguineous family identifies the possible modifying effect of a globally rare AK5 allelic variant in celiac disease development among Saudi patients. PMID:28505210
MicroRNAs in injury and repair. PMID:28501916
A Systems Genetics Approach Identified GPD1L and its Molecular Mechanism for Obesity in Human Adipose Tissue. PMID:28496128
miR-218-5p restores sensitivity to gemcitabine through PRKCE/MDR1 axis in gallbladder cancer. PMID:28492560
MicroRNAs as biomarkers associated with bladder cancer. PMID:28491850
An Integrating Approach for Genome-Wide Screening of MicroRNA Polymorphisms Mediated Drug Response Alterations. PMID:28480217
Identification and profiling of Cyprinus carpio microRNAs during ovary differentiation by deep sequencing. PMID:28454515
Identification of miRNA biomarkers of pneumonia using RNA-sequencing and bioinformatics analysis. PMID:28413462
In silico MCMV Silencing Concludes Potential Host-Derived miRNAs in Maize. PMID:28400775
Downregulation of miR-429 contributes to the development of drug resistance in epithelial ovarian cancer by targeting ZEB1. PMID:28386361
Changes in circulating microRNA levels can be identified as early as day 8 of pregnancy in cattle. PMID:28380001
High-throughput sequencing of pituitary and hypothalamic microRNA transcriptome associated with high rate of egg production. PMID:28335741
MicroRNA-based Regulation of Picornavirus Tropism. PMID:28287517
What Is New in the miRNA World Regarding Osteosarcoma and Chondrosarcoma? PMID:28272374
Identification and characterization of conserved miRNAs with its targets mRNA in Trichinella Spiralis. PMID:28246461
miRNA-based heavy metal homeostasis and plant growth. PMID:28229383
Genome-wide identification of direct HBx genomic targets. PMID:28212627
miR-718 represses proinflammatory cytokine production through targeting phosphatase and tensin homolog (PTEN). PMID:28209713
Defining age- and lactocrine-sensitive elements of the neonatal porcine uterine microRNA-mRNA interactome. PMID:28203709
MicroRNAs regulating cluster of differentiation 46 (CD46) in cardioembolic and non-cardioembolic stroke. PMID:28199366
Global transcriptome analysis reveals extensive gene remodeling, alternative splicing and differential transcription profiles in non-seed vascular plant Selaginella moellendorffii. PMID:28198676
Analysis of miRNA, mRNA, and TF interactions through network-based methods. PMID:28194173
Large-scale analysis of microRNA expression, epi-transcriptomic features and biogenesis. PMID:28180281
MiR-21-5p in urinary extracellular vesicles is a novel biomarker of urothelial carcinoma. PMID:28160564
Differential expression of microRNAs during fiber development between fuzzless-lintless mutant and its wild-type allotetraploid cotton. PMID:28127052
Roles of MIWI, MILI and PLD6 in small RNA regulation in mouse growing oocytes. PMID:28115634
Activation of gga-miR-155 by reticuloendotheliosis virus T strain and its contribution to transformation. PMID:28113043
Pro-inflammation NF-κB signaling triggers a positive feedback via enhancing cholesterol accumulation in liver cancer cells. PMID:28100270
Extracellular vesicle mediated intercellular communication at the porcine maternal-fetal interface: A new paradigm for conceptus-endometrial cross-talk. PMID:28079186
An internet-based bioinformatics toolkit for plant biosecurity diagnosis and surveillance of viruses and viroids. PMID:28077064
Genome-wide association study with additional genetic and post-transcriptional analyses reveals novel regulators of plasma factor XI levels. PMID:28053049
Modulation of microRNA-mRNA Target Pairs by Human Papillomavirus 16 Oncoproteins. PMID:28049151
The in vivo genetic toolkit for studying expression and functions of Drosophila melanogaster microRNAs. PMID:28010188
HIC1 and miR-23~27~24 clusters form a double-negative feedback loop in breast cancer. PMID:28009350
Systemic Wound Healing Associated with local sub-Cutaneous Mechanical Stimulation. PMID:28008941
Exon-Enriched Libraries Reveal Large Genic Differences Between Aedes aegypti from Senegal, West Africa, and Populations Outside Africa. PMID:28007834
A microRNA negative feedback loop downregulates vesicle transport and inhibits fear memory. PMID:28001126
A comparison of microRNA expression profiles from splenic hemangiosarcoma, splenic nodular hyperplasia, and normal spleens of dogs. PMID:27912752
The UCSC Genome Browser database: 2017 update. PMID:27899642
Prediction of human miRNA target genes using computationally reconstructed ancestral mammalian sequences. PMID:27899600
Muscle-Enriched MicroRNAs Isolated from Whole Blood Are Regulated by Exercise and Are Potential Biomarkers of Cardiorespiratory Fitness. PMID:27895662
Small RNA Library Preparation Method for Next-Generation Sequencing Using Chemical Modifications to Prevent Adapter Dimer Formation. PMID:27875576
miRNAsong: a web-based tool for generation and testing of miRNA sponge constructs in silico. PMID:27857164
Systems analysis identifies miR-29b regulation of invasiveness in melanoma. PMID:27852308
The genome of the crustacean Parhyale hawaiensis, a model for animal development, regeneration, immunity and lignocellulose digestion. PMID:27849518
Genome-Wide Scleral Micro- and Messenger-RNA Regulation During Myopia Development in the Mouse. PMID:27832275
Plasma miRNA Profiles in Pregnant Women Predict Infant Outcomes following Prenatal Alcohol Exposure. PMID:27828986
Identification and characterization of microRNAs expressed in the African malaria vector Anopheles funestus life stages using high throughput sequencing. PMID:27825380
Genome-Wide Identification and Analysis of MicroRNAs Involved in Witches'-Broom Phytoplasma Response in Ziziphus jujuba. PMID:27824938
Identification of anthocyanin biosynthesis related microRNAs in a distinctive Chinese radish (Raphanus sativus L.) by high-throughput sequencing. PMID:27817120
Genome-Wide Analysis of Differentially Expressed microRNA in Bombyx mori Infected with Nucleopolyhedrosis Virus. PMID:27806111
Interplay between RNA interference and heat shock response systems in Drosophila melanogaster. PMID:27805906
Comparative Profiling of miRNAs and Target Gene Identification in Distant-Grafting between Tomato and Lycium (Goji Berry). PMID:27803702
MicroRNAs in the Host Response to Viral Infections of Veterinary Importance. PMID:27800484
Associations of mRNA:microRNA for the Shared Downstream Molecules of EGFR and Alternative Tyrosine Kinase Receptors in Non-small Cell Lung Cancer. PMID:27790245
Serum exosomal miR-4772-3p is a predictor of tumor recurrence in stage II and III colon cancer. PMID:27788488
Novel equine tissue miRNAs and breed-related miRNA expressed in serum. PMID:27782799
MicroRNA-939 restricts Hepatitis B virus by targeting Jmjd3-mediated and C/EBPα-coordinated chromatin remodeling. PMID:27779233
miRPathDB: a new dictionary on microRNAs and target pathways. PMID:27742822
Prioritizing cancer-related microRNAs by integrating microRNA and mRNA datasets. PMID:27734929
Discovering MicroRNA-Regulatory Modules in Multi-Dimensional Cancer Genomic Data: A Survey of Computational Methods. PMID:27721651
Genome-Wide Identification and Characterization of MicroRNAs and Target Genes in Lonicera japonica. PMID:27711182
Identification and Characterization of Small Noncoding RNAs in Genome Sequences of the Edible Fungus Pleurotus ostreatus. PMID:27703969
Genome-Wide Anaplasma phagocytophilum AnkA-DNA Interactions Are Enriched in Intergenic Regions and Gene Promoters and Correlate with Infection-Induced Differential Gene Expression. PMID:27703927
The First Report of miRNAs from a Thysanopteran Insect, Thrips palmi Karny Using High-Throughput Sequencing. PMID:27685664
Synovium-Derived MicroRNAs Regulate Bone Pathways in Rheumatoid Arthritis. PMID:27676131
Integrative Modeling Reveals Annexin A2-mediated Epigenetic Control of Mesenchymal Glioblastoma. PMID:27667176
Computational identification and characterization of novel microRNA in the mammary gland of dairy goat (Capra hircus). PMID:27659334
Differences in miRNA and mRNA Profile of Papillary Thyroid Cancer Variants. PMID:27656207
Identification of miRNAs and their targets in wild tomato at moderately and acutely elevated temperatures by high-throughput sequencing and degradome analysis. PMID:27653374
Genome-wide identification and characterisation of HOT regions in the human genome. PMID:27633377
Generation of different sizes and classes of small RNAs in barley is locus, chromosome and/or cultivar-dependent. PMID:27633252
Wnt-signalling pathways and microRNAs network in carcinogenesis: experimental and bioinformatics approaches. PMID:27590724
Preliminary evidence for association of genetic variants in pri-miR-34b/c and abnormal miR-34c expression with attention deficit and hyperactivity disorder. PMID:27576168
Resolvin E1 Reverses Experimental Periodontitis and Dysbiosis. PMID:27543615
HGIMDA: Heterogeneous graph inference for miRNA-disease association prediction. PMID:27533456
Alpha-Defensin 5 Expression is Regulated by microRNAs in the Caco-2 Intestinal Epithelial Cell Line. PMID:27525335
Identification of conserved and novel microRNAs in Porphyridium purpureum via deep sequencing and bioinformatics. PMID:27516065
Identification of extracellular miRNA in archived serum samples by next-generation sequencing from RNA extracted using multiple methods. PMID:27510798
Differential microRNA Expression and Regulation in the Rat Model of Post-Infarction Heart Failure. PMID:27504893
Gld2-catalyzed 3' monoadenylation of miRNAs in the hippocampus has no detectable effect on their stability or on animal behavior. PMID:27495319
Genome-Wide Analysis of Polyadenylation Events in Schmidtea mediterranea. PMID:27489207
Regulation of B-cell development and tolerance by different members of the miR-17∼92 family microRNAs. PMID:27481093
The regulation roles of miR-125b, miR-221 and miR-27b in porcine Salmonella infection signalling pathway. PMID:27474500
Comparison of miRNAs and Their Targets in Seed Development between Two Maize Inbred Lines by High-Throughput Sequencing and Degradome Analysis. PMID:27463682
Recent trends in microRNA research into breast cancer with particular focus on the associations between microRNAs and intrinsic subtypes. PMID:27439682
Targeted inhibition of oncogenic miR-21 maturation with designed RNA-binding proteins. PMID:27428511
Elucidation of transcriptome-wide microRNA binding sites in human cardiac tissues by Ago2 HITS-CLIP. PMID:27418678
Export of microRNAs: A Bridge between Breast Carcinoma and Their Neighboring Cells. PMID:27379209
Specific miRNA Disease Biomarkers in Blood, Serum and Plasma: Challenges and Prospects. PMID:27378479
The impact of feature selection on one and two-class classification performance for plant microRNAs. PMID:27366641
Plasma miRNA expression profile in the diagnosis of late-onset hypogonadism. PMID:27364544
Circulating MicroRNAs: Association with Lung Function in Asthma. PMID:27362794
Dynamic regulation of RNA editing in human brain development and disease. PMID:27348216
Circulating microRNA Profiles during the Bovine Oestrous Cycle. PMID:27340826
A survey of the sorghum transcriptome using single-molecule long reads. PMID:27339290
Expressed miRNAs target feather related mRNAs involved in cell signaling, cell adhesion and structure during chicken epidermal development. PMID:27320726
A comprehensive view of the web-resources related to sericulture. PMID:27307138
MicroRNA-132 targets PEA-15 and suppresses the progression of astrocytoma in vitro. PMID:27294355
Web-based tools for microRNAs involved in human cancer. PMID:27284356
Small RNA transcriptomes of mangroves evolve adaptively in extreme environments. PMID:27278626
Post-transcriptional knowledge in pathway analysis increases the accuracy of phenotypes classification. PMID:27275538
Diagnostic value of microRNAs in asbestos exposure and malignant mesothelioma: systematic review and qualitative meta-analysis. PMID:27259231
Identification of Rapeseed MicroRNAs Involved in Early Stage Seed Germination under Salt and Drought Stresses. PMID:27242859
OGRO: The Overview of functionally characterized Genes in Rice online database. PMID:27234245
miR-190 Enhances HIF-Dependent Responses to Hypoxia in Drosophila by Inhibiting the Prolyl-4-hydroxylase Fatiga. PMID:27223464
SePIA: RNA and small RNA sequence processing, integration, and analysis. PMID:27213017
Identification and Characterization of miRNAs in Chondrus crispus by High-Throughput Sequencing and Bioinformatics Analysis. PMID:27193824
Feature Selection Has a Large Impact on One-Class Classification Accuracy for MicroRNAs in Plants. PMID:27190509
microRNAs in the Same Clusters Evolve to Coordinately Regulate Functionally Related Genes. PMID:27189568
Exploring miRNAs involved in blue/UV-A light response in Brassica rapa reveals special regulatory mode during seedling development. PMID:27160188
Characterization and Small RNA Content of Extracellular Vesicles in Follicular Fluid of Developing Bovine Antral Follicles. PMID:27158133
N(ϵ) -Carboxymethyllysine Increases the Expression of miR-103/143 and Enhances Lipid Accumulation in 3T3-L1 Cells. PMID:27137869
ImiRP: a computational approach to microRNA target site mutation. PMID:27122020
Deep-sequence profiling of miRNAs and their target prediction in Monotropa hypopitys. PMID:27097902
Inforna 2.0: A Platform for the Sequence-Based Design of Small Molecules Targeting Structured RNAs. PMID:27097021
ChemiRs: a web application for microRNAs and chemicals. PMID:27091357
Genome-Wide Identification and Characterization of microRNAs in Developing Grains of Zea mays L. PMID:27082634
Verification of microRNA expression in human endometrial adenocarcinoma. PMID:27039384
ΔNp63α Silences a miRNA Program to Aberrantly Initiate a Wound-Healing Program That Promotes TGFβ-Induced Metastasis. PMID:26988989
The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. PMID:26950095
Identification and validation of a virus-inducible ta-siRNA-generating TAS4 locus in tomato. PMID:26949093
Long non-coding RNA containing ultraconserved genomic region 8 promotes bladder cancer tumorigenesis. PMID:26943042
An Interferon Regulated MicroRNA Provides Broad Cell-Intrinsic Antiviral Immunity through Multihit Host-Directed Targeting of the Sterol Pathway. PMID:26938778
Analysis of secondary structural elements in human microRNA hairpin precursors. PMID:26928172
Staufen Negatively Modulates MicroRNA Activity in Caenorhabditis elegans. PMID:26921297
The genome of the miiuy croaker reveals well-developed innate immune and sensory systems. PMID:26902509
Alteration of Pituitary Tumor Transforming Gene-1 Regulates Trophoblast Invasion via the Integrin/Rho-Family Signaling Pathway. PMID:26900962
Constructing an integrated genetic and epigenetic cellular network for whole cellular mechanism using high-throughput next-generation sequencing data. PMID:26897165
Role of apoptosis-related miRNAs in resveratrol-induced breast cancer cell death. PMID:26890143
microRNAs regulate TAL1 expression in T-cell acute lymphoblastic leukemia. PMID:26882564
A partial loss-of-function mutation in an Arabidopsis RNA polymerase III subunit leads to pleiotropic defects. PMID:26865731
Novel functional microRNAs from virus-free and infected Vitis vinifera plants under water stress. PMID:26833264
DNA methylation in the pathophysiology of hyperphenylalaninemia in the PAH(enu2) mouse model of phenylketonuria. PMID:26822703
A survey of best practices for RNA-seq data analysis. PMID:26813401
Dysregulated expression of microRNAs and mRNAs in myocardial infarction. PMID:26807177
Identification and Expression Analyses of miRNAs from Two Contrasting Flower Color Cultivars of Canna by Deep Sequencing. PMID:26799570
MicroRNA heterogeneity in endometrial cancer cell lines revealed by deep sequencing. PMID:26788150
Relationship between microRNA genes incidence and cancer-associated genomic regions in canine tumors: a comprehensive bioinformatics study. PMID:26780769
MicroRNA: a new and promising potential biomarker for diagnosis and prognosis of ovarian cancer. PMID:26779370
Integrative meta-analysis identifies microRNA-regulated networks in infantile hemangioma. PMID:26772808
Natural products as potential cancer therapy enhancers: A preclinical update. PMID:26770737
miR-503 inhibits cell proliferation and invasion in glioma by targeting L1CAM. PMID:26770450
Competing endogenous RNA in cancer: a new pattern of gene expression regulation. PMID:26770304
Computational identification of putative miRNAs and their target genes in pathogenic amoeba Naegleria fowleri. PMID:26770029
The Host Shapes the Gut Microbiota via Fecal MicroRNA. PMID:26764595
Identification and characterization of microRNAs in the plant parasitic root-knot nematode Meloidogyne incognita using deep sequencing. PMID:26743520
Association between microRNA polymorphisms and papillary thyroid cancer susceptibility. PMID:26722556
miR-503 inhibits cell proliferation and induces apoptosis in colorectal cancer cells by targeting E2F3. PMID:26722476
Cantharidin modulates the E2F1/MCM7-miR-106b-93/p21-PTEN signaling axis in MCF-7 breast cancer cells. PMID:26722252
Competing endogenous RNA: A novel posttranscriptional regulatory dimension associated with the progression of cancer. PMID:26722227
Identification and characterization of microRNAs in Eucheuma denticulatum by high-throughput sequencing and bioinformatics analysis. PMID:26717154
Genome-wide discovery and validation of Eucalyptus small RNAs reveals variable patterns of conservation and diversity across species of Myrtaceae. PMID:26714854
The role of microRNAs in cardiac development and regenerative capacity. PMID:26702142
Breast cancer intrinsic subtype classification, clinical use and future trends. PMID:26693050
The bimodally expressed microRNA miR-142 gates exit from pluripotency. PMID:26690966
Genome-wide analysis of microRNAs identifies the lipid metabolism pathway to be a defining factor in adipose tissue from different sheep. PMID:26690086
A pH Sensitive High-Throughput Assay for miRNA Binding of a Peptide-Aminoglycoside (PA) Library. PMID:26656788
MicroRNA Expression Profile during Aphid Feeding in Chrysanthemum (Chrysanthemum morifolium). PMID:26650759
Prioritizing and selecting likely novel miRNAs from NGS data. PMID:26635395
Loss of serum response factor induces microRNA-mediated apoptosis in intestinal smooth muscle cells. PMID:26633717
Expression and clinical significance of microRNA-21, maspin and vascular endothelial growth factor-C in bladder cancer. PMID:26622898
microRNA-18a regulates gastric carcinoma cell apoptosis and invasion by suppressing hypoxia-inducible factor-1α expression. PMID:26622381
Evolutionarily Dynamic, but Robust, Targeting of Resistance Genes by the miR482/2118 Gene Family in the Solanaceae. PMID:26590211
Regulation signature of miR-143 and miR-26 in porcine Salmonella infection identified by binding site enrichment analysis. PMID:26589421
Host MicroRNA miR-197 Plays a Negative Regulatory Role in the Enterovirus 71 Infectious Cycle by Targeting the RAN Protein. PMID:26581983
Cellular miR-130b inhibits replication of porcine reproductive and respiratory syndrome virus in vitro and in vivo. PMID:26581169
Role of bioinformatics in establishing microRNAs as modulators of abiotic stress responses: the new revolution. PMID:26578966
High-throughput sequencing of RNAs isolated by cross-linking immunoprecipitation (HITS-CLIP) reveals Argonaute-associated microRNAs and targets in Schistosoma japonicum. PMID:26577460
miR-155 targets Caspase-3 mRNA in activated macrophages. PMID:26574931
Deep sequencing of small RNA facilitates tissue and sex associated microRNA discovery in zebrafish. PMID:26574018
Exosomes decrease sensitivity of breast cancer cells to adriamycin by delivering microRNAs. PMID:26555545
RNA Thermodynamic Structural Entropy. PMID:26555444
Mir-351-5p contributes to the establishment of a pro-inflammatory environment in the H9c2 cell line by repressing PTEN expression. PMID:26541756
Inferring plant microRNA functional similarity using a weighted protein-protein interaction network. PMID:26538106
Impacts of Whole-Genome Triplication on MIRNA Evolution in Brassica rapa. PMID:26527651
microRNAs as pharmacogenomic biomarkers for drug efficacy and drug safety assessment. PMID:26501795
Insights into the dynamics of hind leg development in honey bee (Apis mellifera L.) queen and worker larvae - A morphology/differential gene expression analysis. PMID:26500430
Computational identification of microRNAs and their targets in Catharanthus roseus expressed sequence tags. PMID:26484050
The Roles of Arabidopsis CDF2 in Transcriptional and Posttranscriptional Regulation of Primary MicroRNAs. PMID:26473486
Genome-wide identification and functional analysis of lincRNAs acting as miRNA targets or decoys in maize. PMID:26470872
[Chemotherapy with paclitaxel leads to microRNA release]. PMID:26464363
Pattern recognition receptor mediated downregulation of microRNA-650 fine-tunes MxA expression in dendritic cells infected with influenza A virus. PMID:26460926
Omics-Based Biomarkers: Application of Metabolomics in Neuropsychiatric Disorders. PMID:26453695
HDAC inhibitor misprocesses bantam oncomiRNA, but stimulates hid induced apoptotic pathway. PMID:26442596
Identification of Novel and Conserved microRNAs in Homalodisca vitripennis, the Glassy-Winged Sharpshooter by Expression Profiling. PMID:26440407
Regulatory variant in FZD6 gene contributes to nonsyndromic cleft lip and palate in an African-American family. PMID:26436110
Lipopolysaccharide-Induced Differential Expression of miRNAs in Male and Female Rhipicephalus haemaphysaloides Ticks. PMID:26430879
RegNetwork: an integrated database of transcriptional and post-transcriptional regulatory networks in human and mouse. PMID:26424082
Release of Small RNA-containing Exosome-like Vesicles from the Human Filarial Parasite Brugia malayi. PMID:26401956
Survival and Diversity of Human Homologous Dietary MicroRNAs in Conventionally Cooked Top Sirloin and Dried Bovine Tissue Extracts. PMID:26394052
MicroRNA-143 is a putative predictive factor for the response to fluoropyrimidine-based chemotherapy in patients with metastatic colorectal cancer. PMID:26392389
Identification of miR-10b, miR-26a, miR-146a and miR-153 as potential triple-negative breast cancer biomarkers. PMID:26392359
Bioinformatic Interrogation of 5p-arm and 3p-arm Specific miRNA Expression Using TCGA Datasets. PMID:26389959
Asymmetric bulges and mismatches determine 20-nt microRNA formation in plants. PMID:26383777
Identification of four functionally important microRNA families with contrasting differential expression profiles between drought-tolerant and susceptible rice leaf at vegetative stage. PMID:26369665
Small RNA Sequencing Based Identification of MiRNAs in Daphnia magna. PMID:26367422
Regulatory RNAs and control of epigenetic mechanisms: expectations for cognition and cognitive dysfunction. PMID:26366811
Positionally-conserved but sequence-diverged: identification of long non-coding RNAs in the Brassicaceae and Cleomaceae. PMID:26362138
Downregulation of Gabra4 expression during alcohol withdrawal is mediated by specific microRNAs in cultured mouse cortical neurons. PMID:26357588
Cross Platform Standardisation of an Experimental Pipeline for Use in the Identification of Dysregulated Human Circulating MiRNAs. PMID:26355751
Investigation of the Application of miR10b and miR135b in the Identification of Semen Stains. PMID:26355456
RBMMMDA: predicting multiple types of disease-microRNA associations. PMID:26347258
miRNA Influences in NRF2 Pathway Interactions within Cancer Models. PMID:26345522
DNMT1 mediates chemosensitivity by reducing methylation of miRNA-20a promoter in glioma cells. PMID:26337869
Current understanding of the role of microRNAs in spinocerebellar ataxias. PMID:26331031
Identification and profiling of miRNAs in the freeze-avoiding gall moth Epiblema scudderiana via next-generation sequencing. PMID:26328872
miR-155, identified as anti-metastatic by global miRNA profiling of a metastasis model, inhibits cancer cell extravasation and colonization in vivo and causes significant signaling alterations. PMID:26317550
SncRNA715 Inhibits Schwann Cell Myelin Basic Protein Synthesis. PMID:26317513
RAG-3D: a search tool for RNA 3D substructures. PMID:26304547
Predicting effective microRNA target sites in mammalian mRNAs. PMID:26267216
KSHV MicroRNAs Repress Tropomyosin 1 and Increase Anchorage-Independent Growth and Endothelial Tube Formation. PMID:26263384
Analysis of microarray-identified genes and microRNAs associated with drug resistance in ovarian cancer. PMID:26261572
Down but Not Out: The Role of MicroRNAs in Hibernating Bats. PMID:26244645
Identification of MicroRNAs in Meloidogyne incognita Using Deep Sequencing. PMID:26241472
Update on Biomarkers for the Detection of Endometriosis. PMID:26240814
Computer aided gene mining for gingerol biosynthesis. PMID:26229293
Circadian disruption and breast cancer: an epigenetic link? PMID:26220712
Improved Methods to Generate Spheroid Cultures from Tumor Cells, Tumor Cells & Fibroblasts or Tumor-Fragments: Microenvironment, Microvesicles and MiRNA. PMID:26208323
Could the Anti-Chaperone VER155008 Replace Temozolomide for Glioma Treatment. PMID:26185541
MicroRNAs and targets in senescent litchi fruit during ambient storage and post-cold storage shelf life. PMID:26179282
The Discovery, Distribution, and Evolution of Viruses Associated with Drosophila melanogaster. PMID:26172158
The microRNA-183 cluster: the family that plays together stays together. PMID:26170234
Identification of MicroRNAs in Response to Different Day Lengths in Soybean Using High-Throughput Sequencing and qRT-PCR. PMID:26162069
miR-451a Inhibited Cell Proliferation and Enhanced Tamoxifen Sensitive in Breast Cancer via Macrophage Migration Inhibitory Factor. PMID:26161389
MicroRNA Expression Profile in Penile Cancer Revealed by Next-Generation Small RNA Sequencing. PMID:26158897
Transcriptome analysis of mRNA and miRNA in skeletal muscle indicates an important network for differential Residual Feed Intake in pigs. PMID:26150313
Oncogenic Role of miR-15a-3p in 13q Amplicon-Driven Colorectal Adenoma-to-Carcinoma Progression. PMID:26148070
miR-155 Is Essential for Inflammation-Induced Hippocampal Neurogenic Dysfunction. PMID:26134658
KRAS-dependent sorting of miRNA to exosomes. PMID:26132860
MicroRNA-222 promotes human non-small cell lung cancer H460 growth by targeting p27. PMID:26131134
Expression profile of long non-coding RNAs is altered in endometrial cancer. PMID:26131074
Integrated approaches to miRNAs target definition: time-series analysis in an osteosarcoma differentiative model. PMID:26123714
Identification of cytokine-induced modulation of microRNA expression and secretion as measured by a novel microRNA specific qPCR assay. PMID:26108880
Small-RNA asymmetry is directly driven by mammalian Argonautes. PMID:26098316
Integrative miRNA and Gene Expression Profiling Analysis of Human Quiescent Hepatic Stellate Cells. PMID:26096707
Chimira: analysis of small RNA sequencing data and microRNA modifications. PMID:26093149
Identification and Functional Validation of Reciprocal microRNA-mRNA Pairings in African American Prostate Cancer Disparities. PMID:26089375
Human miR-3145 inhibits influenza A viruses replication by targeting and silencing viral PB1 gene. PMID:26080461
Identification and Characterization of Novel Maize Mirnas Involved in Different Genetic Background. PMID:26078720
Robust Distal Tip Cell Pathfinding in the Face of Temperature Stress Is Ensured by Two Conserved microRNAS in Caenorhabditis elegans. PMID:26078280
piRNA-like small RNAs mark extended 3'UTRs present in germ and somatic cells. PMID:26076733
Particulate Air Pollution Exposure and Expression of Viral and Human MicroRNAs in Blood: The Beijing Truck Driver Air Pollution Study. PMID:26068961
Dual regulation by microRNA-200b-3p and microRNA-200b-5p in the inhibition of epithelial-to-mesenchymal transition in triple-negative breast cancer. PMID:26062653
MiR-204 is responsible for inherited retinal dystrophy associated with ocular coloboma. PMID:26056285
ComiRNet: a web-based system for the analysis of miRNA-gene regulatory networks. PMID:26051695
Down-regulation of hsa-miR-1264 contributes to DNMT1-mediated silencing of SOCS3. PMID:26047583
Novel therapeutics for coronary artery disease from genome-wide association study data. PMID:26044129
Principles of miRNA-mRNA interactions: beyond sequence complementarity. PMID:26037721
Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors. PMID:26023934
The use of high-throughput sequencing methods for plant microRNA research. PMID:26016494
Translational regulation shapes the molecular landscape of complex disease phenotypes. PMID:26007203
The schizophrenia risk gene product miR-137 alters presynaptic plasticity. PMID:26005852
Identification and Characterization of MicroRNAs in Ginkgo biloba var. epiphylla Mak. PMID:25978425
MicroRNAs expression patterns in the response of poplar woody root to bending stress. PMID:25963516
Barley Stripe Mosaic Virus (BSMV) Induced MicroRNA Silencing in Common Wheat (Triticum aestivum L.). PMID:25955840
Efficient exploration of pan-cancer networks by generalized covariance selection and interactive web content. PMID:25953855
Analysis of Glioblastoma Patients' Plasma Revealed the Presence of MicroRNAs with a Prognostic Impact on Survival and Those of Viral Origin. PMID:25950799
Bias in ligation-based small RNA sequencing library construction is determined by adaptor and RNA structure. PMID:25942392
The miRNA Transcriptome Directly Reflects the Physiological and Biochemical Differences between Red, White, and Intermediate Muscle Fiber Types. PMID:25938964
Distinct and cooperative activities of HESO1 and URT1 nucleotidyl transferases in microRNA turnover in Arabidopsis. PMID:25928405
Transcriptome-Wide Identification of miRNAs and Their Targets from Typha angustifolia by RNA-Seq and Their Response to Cadmium Stress. PMID:25923807
Identifying TF-MiRNA Regulatory Relationships Using Multiple Features. PMID:25922940
The expression profile of Aedes albopictus miRNAs is altered by dengue virus serotype-2 infection. PMID:25922662
Two less common human microRNAs miR-875 and miR-3144 target a conserved site of E6 oncogene in most high-risk human papillomavirus subtypes. PMID:25913515
Inferring data-specific micro-RNA function through the joint ranking of micro-RNA and pathways from matched micro-RNA and gene expression data. PMID:25910695
miRNA-196b inhibits cell proliferation and induces apoptosis in HepG2 cells by targeting IGF2BP1. PMID:25889892
Annotation of the goat genome using next generation sequencing of microRNA expressed by the lactating mammary gland: comparison of three approaches. PMID:25888052
MicroRNA-mediated regulation of differentiation and trans-differentiation in stem cells. PMID:25887992
Gene profiling characteristics of radioadaptive response in AG01522 normal human fibroblasts. PMID:25886619
Differentially expressed microRNAs in postpartum breast cancer in Hispanic women. PMID:25875827
Improving small RNA-seq by using a synthetic spike-in set for size-range quality control together with a set for data normalization. PMID:25870415
Functional interactions among members of the miR-17-92 cluster in lymphocyte development, differentiation and malignant transformation. PMID:25870038
Sequence features of Drosha and Dicer cleavage sites affect the complexity of isomiRs. PMID:25867481
Evidence That Up-Regulation of MicroRNA-29 Contributes to Postnatal Body Growth Deceleration. PMID:25866874
MicroRNAs in cotton: an open world needs more exploration. PMID:25841643
MiR-195 suppresses non-small cell lung cancer by targeting CHEK1. PMID:25840419
ADRA2A is involved in neuro-endocrine regulation of bone resorption. PMID:25818344
Small RNA sequencing for profiling microRNAs in long-term preserved formalin-fixed and paraffin-embedded non-small cell lung cancer tumor specimens. PMID:25812157
Herb-Partitioned Moxibustion and the miRNAs Related to Crohn's Disease: A Study Based on Rat Models. PMID:25810742
Alternative polyadenylation allows differential negative feedback of human miRNA miR-579 on its host gene ZFR. PMID:25799583
Transcription factor and microRNA interactions in lung cells: an inhibitory link between NK2 homeobox 1, miR-200c and the developmental and oncogenic factors Nfib and Myb. PMID:25763778
Dependence of intracellular and exosomal microRNAs on viral E6/E7 oncogene expression in HPV-positive tumor cells. PMID:25760330
Analysis of 13 cell types reveals evidence for the expression of numerous novel primate- and tissue-specific microRNAs. PMID:25713380
Identification of novel miRNAs and miRNA expression profiling in wheat hybrid necrosis. PMID:25706289
APP intracellular domain acts as a transcriptional regulator of miR-663 suppressing neuronal differentiation. PMID:25695604
The phylogenetic utility and functional constraint of microRNA flanking sequences. PMID:25694624
The Genome 10K Project: a way forward. PMID:25689317
Expression profiling of preadipocyte microRNAs by deep sequencing on chicken lines divergently selected for abdominal fatness. PMID:25675096
MicroRNAs and the regulation of aldosterone signaling in the kidney. PMID:25673770
Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment. PMID:25671092
Identification and characterization of microRNAs from tree peony (Paeonia ostii) and their response to copper stress. PMID:25658957
Polymorphism in the serotonin receptor 2a (HTR2A) gene as possible predisposal factor for aggressive traits. PMID:25658328
MiR-34a, miR-21 and miR-23a as potential biomarkers for coronary artery disease: a pilot microarray study and confirmation in a 32 patient cohort. PMID:25656948
Characterization of the mammalian miRNA turnover landscape. PMID:25653157
miR-216a regulates snx5, a novel notch signaling pathway component, during zebrafish retinal development. PMID:25645681
Methylated microRNA genes of the developing murine palate. PMID:25642850
MiR-429 inhibits oral squamous cell carcinoma growth by targeting ZEB1. PMID:25640197
A global microRNA screen identifies regulators of the ErbB receptor signaling network. PMID:25630670
Comprehensive analysis of small RNA-seq data reveals that combination of miRNA with its isomiRs increase the accuracy of target prediction in Arabidopsis thaliana. PMID:25629686
Methylation of microRNA genes regulates gene expression in bisexual flower development in andromonoecious poplar. PMID:25617468
Overlapping mouse subcongenic strains successfully separate two linked body fat QTL on distal MMU 2. PMID:25613955
Identification and characterization of microRNAs from Chinese pollination constant non-astringent persimmon using high-throughput sequencing. PMID:25604351
Identification of microRNAs and target genes in the fruit and shoot tip of Lycium chinense: a traditional Chinese medicinal plant. PMID:25587984
Role of microRNAs in plant drought tolerance. PMID:25583362
Identification of microRNAs differentially expressed involved in male flower development. PMID:25576251
Protein interactome of muscle invasive bladder cancer. PMID:25569276
Loss of miRNAs during processing and storage of cow's (Bos taurus) milk. PMID:25565082
Improving miRNA-mRNA interaction predictions. PMID:25559987
Epidrug mediated re-expression of miRNA targeting the HMGA transcripts in pituitary cells. PMID:25557289
MicroRNA-301a promotes migration and invasion by targeting TGFBR2 in human colorectal cancer. PMID:25551793
Structure of precursor microRNA's terminal loop regulates human Dicer's dicing activity by switching DExH/D domain. PMID:25549615
A microRNA expression atlas of mouse dendritic cell development. PMID:25533289
MicroRNA-21 Down-regulates Rb1 Expression by Targeting PDCD4 in Retinoblastoma. PMID:25520758
Identification of chilling stress-responsive tomato microRNAs and their target genes by high-throughput sequencing and degradome analysis. PMID:25519760
Genome-wide identification of vegetative phase transition-associated microRNAs and target predictions using degradome sequencing in Malus hupehensis. PMID:25515958
Identification of a polyomavirus microRNA highly expressed in tumors. PMID:25514573
High-throughput sequencing of microRNA transcriptome and expression assay in the sturgeon, Acipenser schrenckii. PMID:25506840
Identifying and validating a combined mRNA and microRNA signature in response to imatinib treatment in a chronic myeloid leukemia cell line. PMID:25506832
Small molecule chemical probes of microRNA function. PMID:25500006
Prediction of clinical outcome in glioblastoma using a biologically relevant nine-microRNA signature. PMID:25499534
A requirement for ERK-dependent Dicer phosphorylation in coordinating oocyte-to-embryo transition in C. elegans. PMID:25490268
Selected extracellular microRNA as potential biomarkers of multiple sclerosis activity--preliminary study. PMID:25487315
Detection of hypoxia markers in the cerebellum after a traumatic frontal cortex injury: a human postmortem gene expression analysis. PMID:25432860
Tissue-aware data integration approach for the inference of pathway interactions in metazoan organisms. PMID:25431329
Deep Sequencing the microRNA profile in rhabdomyosarcoma reveals down-regulation of miR-378 family members. PMID:25427715
microPIR2: a comprehensive database for human-mouse comparative study of microRNA-promoter interactions. PMID:25425035
Prediction of MicroRNA Precursors Using Parsimonious Feature Sets. PMID:25392687
Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes. PMID:25384563
Hunting the needle in the haystack: a guide to obtain biologically meaningful microRNA targets. PMID:25383673
Association study of single nucleotide polymorphisms in mature microRNAs and the risk of thyroid tumor in a Chinese population. PMID:25381599
Discovery and analysis of microRNAs in Leymus chinensis under saline-alkali and drought stress using high-throughput sequencing. PMID:25369004
Systems analysis reveals down-regulation of a network of pro-survival miRNAs drives the apoptotic response in dilated cardiomyopathy. PMID:25361207
Novel miRNA and phasiRNA biogenesis networks in soybean roots from two sister lines that are resistant and susceptible to SCN race 4. PMID:25356812
miRNAome analysis of the mammalian neuronal nicotinic acetylcholine receptor gene family. PMID:25344397
mirMark: a site-level and UTR-level classifier for miRNA target prediction. PMID:25344330
MicroRNA polymorphisms and risk of colorectal cancer. PMID:25342389
[Advances in tumor chemo-resistance regulated by MicroRNA]. PMID:25342041
Molecular cloning and expression analysis of the STAT1 gene in the water buffalo (Bubalus bubalis). PMID:25336386
Regulation of NF-κB signaling by oxidized glycerophospholipid and IL-1β induced miRs-21-3p and -27a-5p in human aortic endothelial cells. PMID:25327529
Genome of the house fly, Musca domestica L., a global vector of diseases with adaptations to a septic environment. PMID:25315136
The effects of microRNA on the absorption, distribution, metabolism and excretion of drugs. PMID:25296724
Identification and characterization of Wilt and salt stress-responsive microRNAs in chickpea through high-throughput sequencing. PMID:25295754
Systematic identification of transcriptional and post-transcriptional regulations in human respiratory epithelial cells during influenza A virus infection. PMID:25281301
miRNome in myocardial infarction: Future directions and perspective. PMID:25276296
Wild-type genotypes of BRCA1 gene SNPs combined with micro-RNA over-expression in mammary tissue leading to familial breast cancer with an increased risk of distant metastases' occurrence. PMID:25273865
Deep sequencing on a genome-wide scale reveals diverse stage-specific microRNAs in cambium during dormancy-release induced by chilling in poplar. PMID:25269469
Functional study of miR-27a in human hepatic stellate cells by proteomic analysis: comprehensive view and a role in myogenic tans-differentiation. PMID:25265485
RNA expression profiling of human iPSC-derived cardiomyocytes in a cardiac hypertrophy model. PMID:25255322
Genetic and epigenetic changes in chromosomally stable and unstable progeny of irradiated cells. PMID:25251398
Up-regulation of miR-146a contributes to the inhibition of invasion of pancreatic cancer cells. PMID:25242818
Syngeneic cardiac and bone marrow stromal cells display tissue-specific microRNA signatures and microRNA subsets restricted to diverse differentiation processes. PMID:25232725
The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing. PMID:25230983
Genome-wide discovery of novel and conserved microRNAs in white shrimp (Litopenaeus vannamei). PMID:25227525
MicroRNA-146a and microRNA-146b expression and anti-inflammatory function in human airway smooth muscle. PMID:25217662
microRNA biogenesis, degradation and activity in plants. PMID:25209320
Integrated miRNA and mRNA profiling of tumor-educated macrophages identifies prognostic subgroups in estrogen receptor-positive breast cancer. PMID:25205039
Multistep model of cervical cancer: participation of miRNAs and coding genes. PMID:25192291
Research resources: comparative microRNA profiles in human corona radiata cells and cumulus oophorus cells detected by next-generation small RNA sequencing. PMID:25188034
Discovery of Novel Leaf Rust Responsive microRNAs in Wheat and Prediction of Their Target Genes. PMID:25180085
Patterns of miRNA expression in Arctic charr development. PMID:25170615
Global population-specific variation in miRNA associated with cancer risk and clinical biomarkers. PMID:25169894
miRBase Tracker: keeping track of microRNA annotation changes. PMID:25157074
Genome-wide discovery and differential regulation of conserved and novel microRNAs in chickpea via deep sequencing. PMID:25151616
Asymmetric mRNA localization contributes to fidelity and sensitivity of spatially localized systems. PMID:25150862
Two-stage genome-wide methylation profiling in childhood-onset Crohn's Disease implicates epigenetic alterations at the VMP1/MIR21 and HLA loci. PMID:25144570
MicroRNA-570-3p regulates HuR and cytokine expression in airway epithelial cells. PMID:25143867
Identification of conserved and novel microRNAs in the Pacific oyster Crassostrea gigas by deep sequencing. PMID:25137038
HumanViCe: host ceRNA network in virus infected cells in human. PMID:25120561
Polymorphisms in MicroRNAs are associated with survival in non-small cell lung cancer. PMID:25103824
Down-regulation of the antisense mitochondrial non-coding RNAs (ncRNAs) is a unique vulnerability of cancer cells and a potential target for cancer therapy. PMID:25100722
microRNA-194 suppresses osteosarcoma cell proliferation and metastasis in vitro and in vivo by targeting CDH2 and IGF1R. PMID:25096247
Innovations in the management of Wilms' tumor. PMID:25083165
Effects of genetic variations on microRNA: target interactions. PMID:25081214
Genome-wide analysis of salt-responsive and novel microRNAs in Populus euphratica by deep sequencing. PMID:25079824
Different microRNA profiles in chronic epilepsy versus acute seizure mouse models. PMID:25078263
Epithelial and stromal expression of miRNAs during prostate cancer progression. PMID:25075250
Epigenetic response in mice mastitis: Role of histone H3 acetylation and microRNA(s) in the regulation of host inflammatory gene expression during Staphylococcus aureus infection. PMID:25075227
Grand challenges in evolutionary and population genetics: the importance of integrating epigenetics, genomics, modeling, and experimentation. PMID:25071827
The multiMiR R package and database: integration of microRNA-target interactions along with their disease and drug associations. PMID:25063298
Inferring condition-specific miRNA activity from matched miRNA and mRNA expression data. PMID:25061069
microRNAs of parasitic helminths - Identification, characterization and potential as drug targets. PMID:25057458
An efficient and sensitive method for preparing cDNA libraries from scarce biological samples. PMID:25056322
5' isomiR variation is of functional and evolutionary importance. PMID:25056318
MicroRNA-204, a direct negative regulator of ezrin gene expression, inhibits glioma cell migration and invasion. PMID:25055875
MicroRNA in teleost fish. PMID:25053657
The common marmoset genome provides insight into primate biology and evolution. PMID:25038751
Detection of circulating parasite-derived microRNAs in filarial infections. PMID:25033073
Differential expression of miR-139, miR-486 and miR-21 in breast cancer patients sub-classified according to lymph node status. PMID:25027758
Regulation of microRNA biogenesis. PMID:25027649
High-throughput sequencing reveals small RNAs involved in ASGV infection. PMID:24998458
A genome-wide miRNA screen revealed miR-603 as a MGMT-regulating miRNA in glioblastomas. PMID:24994119
AGO1 controls arabidopsis inflorescence architecture possibly by regulating TFL1 expression. PMID:24989784
Differential expression of microRNAs and other small RNAs in barley between water and drought conditions. PMID:24975557
Exosomes from docetaxel-resistant breast cancer cells alter chemosensitivity by delivering microRNAs. PMID:24969560
Epigenetic regulation of persistent pain. PMID:24948399
Roles of small RNAs in soybean defense against Phytophthora sojae infection. PMID:24944042
Genome-wide mapping of miRNAs expressed in embryonic stem cells and pluripotent stem cells generated by different reprogramming strategies. PMID:24942538
Role of miR-146a in human chondrocyte apoptosis in response to mechanical pressure injury in vitro. PMID:24939082
MicroRNA target prediction: theory and practice. PMID:24938624
Tc1-like transposable elements in plant genomes. PMID:24926322
Comparison of REST cistromes across human cell types reveals common and context-specific functions. PMID:24922058
Structured RNAs and synteny regions in the pig genome. PMID:24917120
Dysregulated microRNA clusters in response to retinoic acid and CYP26B1 inhibitor induced testicular function in dogs. PMID:24911586
Regulatory and coding genome regions are enriched for trait associated variants in dairy and beef cattle. PMID:24903263
Establishing reliable miRNA-cancer association network based on text-mining method. PMID:24895499
A comparison of performance of plant miRNA target prediction tools and the characterization of features for genome-wide target prediction. PMID:24885295
Ensemble-based classification approach for micro-RNA mining applied on diverse metagenomic sequences. PMID:24884968
Oncogenic transformation of diverse gastrointestinal tissues in primary organoid culture. PMID:24859528
Predicting response to preoperative chemotherapy agents by identifying drug action on modeled microRNA regulation networks. PMID:24848634
Exosomes in human semen carry a distinctive repertoire of small non-coding RNAs with potential regulatory functions. PMID:24838567
Transcriptional Gene Silencing (TGS) via the RNAi Machinery in HIV-1 Infections. PMID:24832229
Issues and prospects of microRNA-based biomarkers in blood and other body fluids. PMID:24830712
Exploitation of a very small peptide nucleic acid as a new inhibitor of miR-509-3p involved in the regulation of cystic fibrosis disease-gene expression. PMID:24829907
Diversity and expression of microRNAs in the filarial parasite, Brugia malayi. PMID:24824352
Identification of microRNA as sepsis biomarker based on miRNAs regulatory network analysis. PMID:24809055
miRNA gene counts in chromosomes vary widely in a species and biogenesis of miRNA largely depends on transcription or post-transcriptional processing of coding genes. PMID:24808907
Integrating omics technologies to study pulmonary physiology and pathology at the systems level. PMID:24802001
microRNAs 424 and 503 are mediators of the anti-proliferative and anti-invasive action of the thyroid hormone receptor beta. PMID:24796297
De novo transcriptome and small RNA analyses of two amorphophallus species. PMID:24759927
Identification of novel and conserved microRNAs related to drought stress in potato by deep sequencing. PMID:24748226
Genome-wide comparative analysis of 20 miniature inverted-repeat transposable element families in Brassica rapa and B. oleracea. PMID:24747717
Exosomes from drug-resistant breast cancer cells transmit chemoresistance by a horizontal transfer of microRNAs. PMID:24740415
An ensemble approach to the evolution of complex systems. PMID:24736159
Interleukin-19 impairment in active Crohn's disease patients. PMID:24718601
Long non-coding RNAs: a novel endogenous source for the generation of Dicer-like 1-dependent small RNAs in Arabidopsis thaliana. PMID:24717238
Next Generation Sequencing of miRNAs - Strategies, Resources and Methods. PMID:24710011
MicroRNA-155 as an inducer of apoptosis and cell differentiation in Acute Myeloid Leukaemia. PMID:24708856
Prognostic biomarkers for prediction of recurrence of hepatocellular carcinoma: current status and future prospects. PMID:24696598
Concordant changes of plasma and kidney microRNA in the early stages of acute kidney injury: time course in a mouse model of bilateral renal ischemia-reperfusion. PMID:24695114
Identification and characterization of the expression profile of microRNAs in Anopheles anthropophagus. PMID:24690438
microRNAs in axon guidance. PMID:24672429
Intestinal epithelial barrier disruption through altered mucosal microRNA expression in human immunodeficiency virus and simian immunodeficiency virus infections. PMID:24672033
A genome-wide perspective of miRNAome in response to high temperature, salinity and drought stresses in Brassica juncea (Czern) L. PMID:24671003
Identification of microRNAs in the coral Stylophora pistillata. PMID:24658574
Network analysis of microRNAs, genes and their regulation in human bladder cancer. PMID:24649053
Sources of individual variability: miRNAs that predispose to neuropathic pain identified using genome-wide sequencing. PMID:24642266
A microRNA signature associated with early recurrence in breast cancer. PMID:24632820
mrSNP: software to detect SNP effects on microRNA binding. PMID:24629096
Transcriptome microRNA profiling of bovine mammary epithelial cells challenged with Escherichia coli or Staphylococcus aureus bacteria reveals pathogen directed microRNA expression profiles. PMID:24606609
MiRNA-125a-5p: a regulator and predictor of gefitinib's effect on nasopharyngeal carcinoma. PMID:24602316
Common features of microRNA target prediction tools. PMID:24600468
Differential microRNA expression signatures and cell type-specific association with Taxol resistance in ovarian cancer cells. PMID:24591819
Colonic miRNA expression/secretion, regulated by intestinal epithelial PepT1, plays an important role in cell-to-cell communication during colitis. PMID:24586284
A novel two-layer SVM model in miRNA Drosha processing site detection. PMID:24565218
A computational method for predicting regulation of human microRNAs on the influenza virus genome. PMID:24565017
MicroRNA identification using linear dimensionality reduction with explicit feature mapping. PMID:24564997
Application of microRNA and mRNA expression profiling on prognostic biomarker discovery for hepatocellular carcinoma. PMID:24564407
Co-modulated behavior and effects of differentially expressed miRNA in colorectal cancer. PMID:24564330
MicroRNA-target binding structures mimic microRNA duplex structures in humans. PMID:24551166
MicroRNAs in bovine adipogenesis: genomic context, expression and function. PMID:24548287
Up-regulated MicroRNA-181a induces carcinogenesis in hepatitis B virus-related hepatocellular carcinoma by targeting E2F5. PMID:24529171
Post-transcriptional regulation of human breast cancer cell proteome by unliganded estrogen receptor β via microRNAs. PMID:24525454
Integrated analysis of microRNA and mRNA expression and association with HIF binding reveals the complexity of microRNA expression regulation under hypoxia. PMID:24517586
Microvesicle-associated microRNA expression is altered upon particulate matter exposure in healthy workers and in A549 cells. PMID:24515752
Rapid identification of regulatory microRNAs by miTRAP (miRNA trapping by RNA in vitro affinity purification). PMID:24510096
Sequence-based design of bioactive small molecules that target precursor microRNAs. PMID:24509821
Identification and differential expression of microRNAs in ovaries of laying and Broody geese (Anser cygnoides) by Solexa sequencing. PMID:24505332
Two-dimensional combinatorial screening enables the bottom-up design of a microRNA-10b inhibitor. PMID:24503738
Candidate disease gene prediction using Gentrepid: application to a genome-wide association study on coronary artery disease. PMID:24498628
Analyses of hypomethylated oil palm gene space. PMID:24497974
Integrated mRNA and microRNA transcriptome sequencing characterizes sequence variants and mRNA-microRNA regulatory network in nasopharyngeal carcinoma model systems. PMID:24490137
Targeting miRNAs for pancreatic cancer therapy. PMID:24479803
The role of viral and host microRNAs in the Aujeszky's disease virus during the infection process. PMID:24475202
Identification of tissue microRNAs predictive of sunitinib activity in patients with metastatic renal cell carcinoma. PMID:24475095
Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons. PMID:24475082
Reference genes for real-time PCR quantification of messenger RNAs and microRNAs in mouse model of obesity. PMID:24465854
NMDA receptor-dependent regulation of miRNA expression and association with Argonaute during LTP in vivo. PMID:24454279
The Arabidopsis miR472-RDR6 silencing pathway modulates PAMP- and effector-triggered immunity through the post-transcriptional control of disease resistance genes. PMID:24453975
Robust global microRNA expression profiling using next-generation sequencing technologies. PMID:24445778
Let-7d microRNA affects mesenchymal phenotypic properties of lung fibroblasts. PMID:24441869
TMPRSS4 regulates levels of integrin α5 in NSCLC through miR-205 activity to promote metastasis. PMID:24434435
The first draft of the pigeonpea genome sequence. PMID:24431589
MicroRNA function and dysregulation in bone tumors: the evidence to date. PMID:24426787
Fast selection of miRNA candidates based on large-scale pre-computed MFE sets of randomized sequences. PMID:24418292
MicroRNAs Implicated in Dysregulation of Gene Expression Following Human Lung Transplantation. PMID:24416715
Coordinate microRNA-mediated regulation of protein complexes in prostate cancer. PMID:24391925
Small RNA analysis in Sindbis virus infected human HEK293 cells. PMID:24391886
Efficient computation of minimal perturbation sets in gene regulatory networks. PMID:24391592
Assessing an improved protocol for plasma microRNA extraction. PMID:24376572
An integrative bioinformatics pipeline for the genomewide identification of novel porcine microRNA genes. PMID:24371181
ATHENA: Identifying interactions between different levels of genomic data associated with cancer clinical outcomes using grammatical evolution neural network. PMID:24359638
The distribution of circulating microRNA and their relation to coronary disease. PMID:24358814
Discovery and visualization of miRNA-mRNA functional modules within integrated data using bicluster analysis. PMID:24357407
MicroRNA156: a potential graft-transmissible microRNA that modulates plant architecture and tuberization in Solanum tuberosum ssp. andigena. PMID:24351688
Curcumin intake affects miRNA signature in murine melanoma with mmu-miR-205-5p most significantly altered. PMID:24349037
iMir: an integrated pipeline for high-throughput analysis of small non-coding RNA data obtained by smallRNA-Seq. PMID:24330401
Identification of Cassava MicroRNAs under Abiotic Stress. PMID:24328029
Fine mapping of variants associated with endometriosis in the WNT4 region on chromosome 1p36. PMID:24319535
MiR-139 targets CXCR4 and inhibits the proliferation and metastasis of laryngeal squamous carcinoma cells. PMID:24318902
Changes in the expression of miR-381 and miR-495 are inversely associated with the expression of the MDR1 gene and development of multi-drug resistance. PMID:24303078
MicroRNAs: fundamental regulators of gene expression in major affective disorders and suicidal behavior? PMID:24298237
Virus-based microRNA silencing in plants. PMID:24296072
PA28gamma emerges as a novel functional target of tumour suppressor microRNA-7 in non-small-cell lung cancer. PMID:24281003
Introns targeted by plant microRNAs: a possible novel mechanism of gene regulation. PMID:24280590
siRNA Genome Screening Approaches to Therapeutic Drug Repositioning. PMID:24275945
miRBase: annotating high confidence microRNAs using deep sequencing data. PMID:24275495
miR-210: fine-tuning the hypoxic response. PMID:24272361
PHDcleav: a SVM based method for predicting human Dicer cleavage sites using sequence and secondary structure of miRNA precursors. PMID:24267009
Deep sequencing of small RNA repertoires in mice reveals metabolic disorders-associated hepatic miRNAs. PMID:24260478
MicroRNA transcriptome in swine small intestine during weaning stress. PMID:24260202
miR-363-5p regulates endothelial cell properties and their communication with hematopoietic precursor cells. PMID:24257019
Construction of microRNA functional families by a mixture model of position weight matrices. PMID:24255813
Deep sequencing identification of novel glucocorticoid-responsive miRNAs in apoptotic primary lymphocytes. PMID:24250753
Deregulation of microRNA expression in thyroid neoplasias. PMID:24247220
A useful method of identifying of miRNAs which can down-regulate Zeb-2. PMID:24245745
MicroRNA-related sequence variations in human cancers. PMID:24241281
Intrinsic features in microRNA transcriptomes link porcine visceral rather than subcutaneous adipose tissues to metabolic risk. PMID:24223210
Integrated profiling of microRNA expression in membranous nephropathy using high-throughput sequencing technology. PMID:24220188
Dynamic modelling of microRNA regulation during mesenchymal stem cell differentiation. PMID:24219887
Emerging Evidence for MicroRNAs as Regulators of Cancer Stem Cells. PMID:24213119
Identification of microRNAs in wool follicles during anagen, catagen, and telogen phases in Tibetan sheep. PMID:24204975
miR-888 is an expressed prostatic secretions-derived microRNA that promotes prostate cell growth and migration. PMID:24200968
Identification and characterization of microRNAs involved in growth of blunt snout bream (Megalobrama amblycephala) by Solexa sequencing. PMID:24188211
De novo transcriptome analysis using 454 pyrosequencing of the Himalayan Mayapple, Podophyllum hexandrum. PMID:24182234
A meta-analysis revealed insights into the sources, conservation and impact of microRNA 5'-isoforms in four model species. PMID:24178030
Translational repression of SLC26A3 by miR-494 in intestinal epithelial cells. PMID:24177028
VAN: an R package for identifying biologically perturbed networks via differential variability analysis. PMID:24156242
Involvement of miRNAs in the differentiation of human glioblastoma multiforme stem-like cells. PMID:24155920
Altered expression of miR-24, miR-126 and miR-365 does not affect viability of childhood TCF3-rearranged leukemia cells. PMID:24153013
High-throughput screens identify microRNAs essential for HER2 positive breast cancer cell growth. PMID:24148764
Role of hepatitis B virus genotype D & its mutants in occult hepatitis B infection. PMID:24135177
Regulation of hepatitis B virus replication by epigenetic mechanisms and microRNAs. PMID:24133502
Neuronal dark matter: the emerging role of microRNAs in neurodegeneration. PMID:24133413
Performance comparison of digital microRNA profiling technologies applied on human breast cancer cell lines. PMID:24116077
Dual role of miR-21 in CD4+ T-cells: activation-induced miR-21 supports survival of memory T-cells and regulates CCR7 expression in naive T-cells. PMID:24098447
Developmental and activity-dependent miRNA expression profiling in primary hippocampal neuron cultures. PMID:24098357
Regulation of MIR genes in response to abiotic stress in Hevea brasiliensis. PMID:24084713
Simultaneous Detection of Different MicroRNA Types Using the ZIP-Code Array System. PMID:24078866
Computational prediction and experimental validation of microRNAs in the brown alga Ectocarpus siliculosus. PMID:24078085
ceRNA cross-talk in cancer: when ce-bling rivalries go awry. PMID:24072616
MicroRNAs act complementarily to regulate disease-related mRNA modules in human diseases. PMID:24062574
Development-associated microRNAs in grains of wheat (Triticum aestivum L.). PMID:24060047
Integrated genomic analysis of triple-negative breast cancers reveals novel microRNAs associated with clinical and molecular phenotypes and sheds light on the pathways they control. PMID:24059244
Characterization of microRNA expression profiles in 3T3-L1 adipocytes overexpressing C10orf116. PMID:24052233
MicroRNAs: history, biogenesis, and their evolving role in animal development and disease. PMID:24045890
MicroRNA expression profiles in Kaposi's sarcoma. PMID:24027049
Expansion of ruminant-specific microRNAs shapes target gene expression divergence between ruminant and non-ruminant species. PMID:24020371
Network and data integration for biomarker signature discovery via network smoothed T-statistics. PMID:24019896
Identification of MiRNA from eggplant (Solanum melongena L.) by small RNA deep sequencing and their response to Verticillium dahliae infection. PMID:24015279
A genome-wide identification and characterization of mircoRNAs and their targets in 'Suli' pear (Pyrus pyrifolia white pear group). PMID:24013795
The miRNA world of polyomaviruses. PMID:23984639
RKIP and HMGA2 regulate breast tumor survival and metastasis through lysyl oxidase and syndecan-2. PMID:23975428
Regulation of huntingtin gene expression by miRNA-137, -214, -148a, and their respective isomiRs. PMID:23965969
Small RNA-mediated regulation of host-pathogen interactions. PMID:23958954
Prediction of microRNAs associated with human diseases based on weighted k most similar neighbors. PMID:23950912
MicroRNAs may solve the mystery of chronic hepatitis B virus infection. PMID:23946591
Genome-wide analyses of Epstein-Barr virus reveal conserved RNA structures and a novel stable intronic sequence RNA. PMID:23937650
A Complex Network of MicroRNAs Expressed in Brain and Genes Associated with Amyotrophic Lateral Sclerosis. PMID:23936767
Mammalian miRNA curation through next-generation sequencing. PMID:23935604
MicroRNA expression differentiates squamous epithelium from Barrett's esophagus and esophageal cancer. PMID:23925817
Transcriptome-wide identification and characterization of microRNAs from castor bean (Ricinus communis L.). PMID:23894571
Construction of small RNA-mediated gene regulatory networks in the roots of rice (Oryza sativa). PMID:23889819
miR-20b, miR-98, miR-125b-1*, and let-7e* as new potential diagnostic biomarkers in ulcerative colitis. PMID:23885139
Biogenesis, turnover, and mode of action of plant microRNAs. PMID:23881412
Inferring potential microRNA-microRNA associations based on targeting propensity and connectivity in the context of protein interaction network. PMID:23874989
Elucidation of miRNAs-mediated responses to low nitrogen stress by deep sequencing of two soybean genotypes. PMID:23861762
The Phytochemical Shikonin Stimulates Epithelial-Mesenchymal Transition (EMT) in Skin Wound Healing. PMID:23861701
Search for signatures in miRNAs associated with cancer. PMID:23861569
A novel epigenetic CREB-miR-373 axis mediates ZIP4-induced pancreatic cancer growth. PMID:23857777
Viability, longevity, and egg production of Drosophila melanogaster are regulated by the miR-282 microRNA. PMID:23852386
Identification of microRNAs dysregulated in cellular senescence driven by endogenous genotoxic stress. PMID:23852002
Widespread purifying selection on RNA structure in mammals. PMID:23847102
Involvement of microRNAs in infection of silkworm with bombyx mori cytoplasmic polyhedrosis virus (BmCPV). PMID:23844171
Plant microRNAs display differential 3' truncation and tailing modifications that are ARGONAUTE1 dependent and conserved across species. PMID:23839787
TNFRSF10B polymorphisms and haplotypes associated with increased risk of death in non-small cell lung cancer. PMID:23839018
RNaseIII and T4 polynucleotide Kinase sequence biases and solutions during RNA-seq library construction. PMID:23826734
MicroRNA-21 knockout improve the survival rate in DSS induced fatal colitis through protecting against inflammation and tissue injury. PMID:23826144
MicroRNA and piRNA profiles in normal human testis detected by next generation sequencing. PMID:23826142
DNA methylation patterns facilitate the identification of microRNA transcription start sites: a brain-specific study. PMID:23826117
MicroRNA-gene expression network in murine liver during Schistosoma japonicum infection. PMID:23825609
Prospects for improving brain function in individuals with Down syndrome. PMID:23821040
Deep sequencing discovery of novel and conserved microRNAs in wild type and a white-flesh mutant strawberry. PMID:23807373
MicroRNA-195 targets ADP-ribosylation factor-like protein 2 to induce apoptosis in human embryonic stem cell-derived neural progenitor cells. PMID:23807224
Exome sequencing resolves apparent incidental findings and reveals further complexity of SH3TC2 variant alleles causing Charcot-Marie-Tooth neuropathy. PMID:23806086
A Single Nucleotide Polymorphism within the Interferon Gamma Receptor 2 Gene Perfectly Coincides with Polledness in Holstein Cattle. PMID:23805331
Sharpening of expression domains induced by transcription and microRNA regulation within a spatio-temporal model of mid-hindbrain boundary formation. PMID:23799959
The regulation and function of microRNAs in kidney diseases. PMID:23794512
Combined small RNA and degradome sequencing reveals novel miRNAs and their targets in response to low nitrate availability in maize. PMID:23788746
Biogenesis, evolution and functional targets of microRNA-125a. PMID:23783428
Integrated analysis of microRNA and mRNA expression: adding biological significance to microRNA target predictions. PMID:23771142
Computational prediction of the localization of microRNAs within their pre-miRNA. PMID:23748953
Molecular imaging strategies for in vivo tracking of microRNAs: a comprehensive review. PMID:23745564
Wolbachia uses a host microRNA to regulate transcripts of a methyltransferase, contributing to dengue virus inhibition in Aedes aegypti. PMID:23733960
Microarray analysis of microRNA expression in peripheral blood mononuclear cells of critically ill patients with influenza A (H1N1). PMID:23731466
PMTED: a plant microRNA target expression database. PMID:23725466
Sequence selective recognition of double-stranded RNA at physiologically relevant conditions using PNA-peptide conjugates. PMID:23721369
A Review of Computational Tools in microRNA Discovery. PMID:23720668
Defining RNA motif-aminoglycoside interactions via two-dimensional combinatorial screening and structure-activity relationships through sequencing. PMID:23719281
Genome-wide analysis reveals diversity of rice intronic miRNAs in sequence structure, biogenesis and function. PMID:23717514
Small RNA sequencing-microarray analyses in Parkinson leukocytes reveal deep brain stimulation-induced splicing changes that classify brain region transcriptomes. PMID:23717260
Insilico profiling of microRNAs in Korean ginseng (Panax ginseng Meyer). PMID:23717176
Fluctuation of global gene expression by endogenous miRNA response to the introduction of an exogenous miRNA. PMID:23712357
Base Composition Characteristics of Mammalian miRNAs. PMID:23710337
CLIP-based prediction of mammalian microRNA binding sites. PMID:23703212
Integrative analysis of miRNA and mRNA profiles in response to ethylene in rose petals during flower opening. PMID:23696879
A deep analysis of the small non-coding RNA population in Schistosoma japonicum eggs. PMID:23691136
Overexpression of miR-26a-2 in human liposarcoma is correlated with poor patient survival. PMID:23689287
Sexual dimorphism floral microRNA profiling and target gene expression in andromonoecious poplar (Populus tomentosa). PMID:23667507
Characterization of novel precursor miRNAs using next generation sequencing and prediction of miRNA targets in Atlantic halibut. PMID:23626677
Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding. PMID:23622248
Members of the high mobility group B protein family are dynamically expressed in embryonic neural stem cells. PMID:23621913
MicroRNA transcriptomes relate intermuscular adipose tissue to metabolic risk. PMID:23609494
MicroRNAs as pharmacological targets in endothelial cell function and dysfunction. PMID:23603154
MicroRNA-1291-mediated silencing of IRE1α enhances Glypican-3 expression. PMID:23598528
Comparative expression profiling of miRNA during anther development in genetic male sterile and wild type cotton. PMID:23597285
Prioritization of genetic variants in the microRNA regulome as functional candidates in genome-wide association studies. PMID:23595788
TUMIR: an experimentally supported database of microRNA deregulation in various cancers. PMID:23594715
Identification and analysis of red sea mangrove (Avicennia marina) microRNAs by high-throughput sequencing and their association with stress responses. PMID:23593307
Advances in the techniques for the prediction of microRNA targets. PMID:23591837
Catalog of Erycina pusilla miRNA and categorization of reproductive phase-related miRNAs and their target gene families. PMID:23575662
Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis. PMID:23570526
Identification of microRNA-mRNA functional interactions in UVB-induced senescence of human diploid fibroblasts. PMID:23557329
miR-146a inhibits cell growth, cell migration and induces apoptosis in non-small cell lung cancer cells. PMID:23555954
MicroRNA-382 expression is elevated in the olfactory neuroepithelium of schizophrenia patients. PMID:23542694
OstemiR: a novel panel of microRNA biomarkers in osteoblastic and osteocytic differentiation from mesencymal stem cells. PMID:23533592
MicroRNA 9-3p targets β1 integrin to sensitize claudin-low breast cancer cells to MEK inhibition. PMID:23530058
Characterization and comparative profiling of miRNAs in invasive Bemisia tabaci (Gennadius) B and Q. PMID:23527280
Identifying dysfunctional miRNA-mRNA regulatory modules by inverse activation, cofunction, and high interconnection of target genes: a case study of glioblastoma. PMID:23516263
PU.1-dependent transcriptional regulation of miR-142 contributes to its hematopoietic cell-specific expression and modulation of IL-6. PMID:23509362
MicroRNAs: an emerging science in cancer epigenetics. PMID:23497588
Deep sequencing and genome-wide analysis reveals the expansion of MicroRNA genes in the gall midge Mayetiola destructor. PMID:23496979
Increased sensitivity to chemotherapy induced by CpG-ODN treatment is mediated by microRNA modulation. PMID:23484053
MicroRNA-584 and the protein phosphatase and actin regulator 1 (PHACTR1), a new signaling route through which transforming growth factor-β Mediates the migration and actin dynamics of breast cancer cells. PMID:23479725
Integrative Approaches for microRNA Target Prediction: Combining Sequence Information and the Paired mRNA and miRNA Expression Profiles. PMID:23467572
MicroRNAs-1614-3p gene seed region polymorphisms and association analysis with chicken production traits. PMID:23456846
MicroRNAs and their putative targets in Brassica napus seed maturation. PMID:23448243
Identification of radiation-induced microRNA transcriptome by next-generation massively parallel sequencing. PMID:23447695
Large scale chromosomal mapping of human microRNA structural clusters. PMID:23444140
Comparison of microRNA expression in hippocampus and the marginal division (MrD) of the neostriatum in rats. PMID:23425148
Novel pancreatic endocrine maturation pathways identified by genomic profiling and causal reasoning. PMID:23418498
A common MicroRNA signature consisting of miR-133a, miR-139-3p, and miR-142-3p clusters bladder carcinoma in situ with normal umbrella cells. PMID:23410519
Characterization and expression profiling of selected microRNAs in tomato (Solanum lycopersicon) 'Jiangshu14'. PMID:23408149
Noncoding RNAs and Cancer. PMID:23407615
The Role of MicroRNAs in Human Diseases. PMID:23407304
Systematic transcriptome wide analysis of lncRNA-miRNA interactions. PMID:23405074
Novel microRNA families expanded in the human genome. PMID:23402294
pseudoMap: an innovative and comprehensive resource for identification of siRNA-mediated mechanisms in human transcribed pseudogenes. PMID:23396300
TGF-β/Smad2/3 signaling directly regulates several miRNAs in mouse ES cells and early embryos. PMID:23390484
Computational identification and characterization of putative miRNAs in Heliothis virescens. PMID:23390350
A simple high-throughput technology enables gain-of-function screening of human microRNAs. PMID:23384178
Multi-platform analysis of microRNA expression measurements in RNA from fresh frozen and FFPE tissues. PMID:23382819
Small RNA and degradome sequencing reveal complex miRNA regulation during cotton somatic embryogenesis. PMID:23382553
MicroRNAs in human cancer. PMID:23377965
Down-regulation of miR-106b suppresses the growth of human glioma cells. PMID:23377830
miRNA expression profile analysis in kidney of different porcine breeds. PMID:23372853
MicroRNA-221 induces cell survival and cisplatin resistance through PI3K/Akt pathway in human osteosarcoma. PMID:23372675
Analysis of miR-205 and miR-155 expression in the blood of breast cancer patients. PMID:23372341
An enhanced computational platform for investigating the roles of regulatory RNA and for identifying functional RNA motifs. PMID:23369107
Important miRs of pathways in different tumor types. PMID:23358700
MicroRNAs and the genetic network in aging. PMID:23353823
MicroRNA-mediated suppression of oncolytic adenovirus replication in human liver. PMID:23349911
The sequence structures of human microRNA molecules and their implications. PMID:23349828
Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers. PMID:23340843
Detecting miRNAs in deep-sequencing data: a software performance comparison and evaluation. PMID:23334922
miRNA-transcription factor interactions: a combinatorial regulation of gene expression. PMID:23334784
Identification of Dirofilaria immitis miRNA using illumina deep sequencing. PMID:23331513
RNAi pathways contribute to developmental history-dependent phenotypic plasticity in C. elegans. PMID:23329696
Deep sequencing of small RNAs identifies canonical and non-canonical miRNA and endogenous siRNAs in mammalian somatic tissues. PMID:23325850
Identification of miRNAs and their targets using high-throughput sequencing and degradome analysis in cytoplasmic male-sterile and its maintainer fertile lines of Brassica juncea. PMID:23324572
Orchidstra: an integrated orchid functional genomics database. PMID:23324169
Genome-wide identification of alternate bearing-associated microRNAs (miRNAs) in olive (Olea europaea L.). PMID:23320600
Bone morphogenetic protein-2 decreases microRNA-30b and microRNA-30c to promote vascular smooth muscle cell calcification. PMID:23316327
Ensemble analysis of primary microRNA structure reveals an extensive capacity to deform near the Drosha cleavage site. PMID:23305493
Heart structure-specific transcriptomic atlas reveals conserved microRNA-mRNA interactions. PMID:23300973
Comparative transcriptome profiling of dairy goat microRNAs from dry period and peak lactation mammary gland tissues. PMID:23300659
Duplication of C7orf58, WNT16 and FAM3C in an obese female with a t(7;22)(q32.1;q11.2) chromosomal translocation and clinical features resembling Coffin-Siris Syndrome. PMID:23300646
MmPalateMiRNA, an R package compendium illustrating analysis of miRNA microarray data. PMID:23298515
Mechanistic insights into the role of microRNAs in cancer: influence of nutrient crosstalk. PMID:23293655
Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes. PMID:23291876
Identification of microRNAs in Helicoverpa armigera and Spodoptera litura based on deep sequencing and homology analysis. PMID:23289012
Reverse genetics screen in zebrafish identifies a role of miR-142a-3p in vascular development and integrity. PMID:23285103
Inferring microRNA regulation of mRNA with partially ordered samples of paired expression data and exogenous prediction algorithms. PMID:23284698
Differential combinatorial regulatory network analysis related to venous metastasis of hepatocellular carcinoma. PMID:23282077
C-mii: a tool for plant miRNA and target identification. PMID:23281648
A computational tool for the design of live attenuated virus vaccine based on microRNA-mediated gene silencing. PMID:23281624
The regulatory effect of miRNAs is a heritable genetic trait in humans. PMID:23272639
Evidence for small RNAs homologous to effector-encoding genes and transposable elements in the oomycete Phytophthora infestans. PMID:23272103
Genomewide analysis of intronic microRNAs in rice and Arabidopsis. PMID:23271017
A three-plasma miRNA signature serves as novel biomarkers for osteosarcoma. PMID:23269581
STA1, an Arabidopsis pre-mRNA processing factor 6 homolog, is a new player involved in miRNA biogenesis. PMID:23268445
Stability of miRNA 5'terminal and seed regions is correlated with experimentally observed miRNA-mediated silencing efficacy. PMID:23251782
Complex role of microRNAs in HTLV-1 infections. PMID:23251140
MicroRNA: A Bridge from H. pylori Infection to Gastritis and Gastric Cancer Development. PMID:23248648
Give It AGO: The Search for miRNA-Argonaute Sorting Signals in Arabidopsis thaliana Indicates a Relevance of Sequence Positions Other than the 5'-Position Alone. PMID:23233858
Human hepatocellular carcinoma cell-specific miRNAs reveal the differential expression of miR-24 and miR-27a in cirrhotic/non-cirrhotic HCC. PMID:23229173
The repertoire and features of human platelet microRNAs. PMID:23226537
Expression-based functional investigation of the organ-specific microRNAs in Arabidopsis. PMID:23226412
Identifying conserved and novel microRNAs in developing seeds of Brassica napus using deep sequencing. PMID:23226347
microRNA miR-34a regulates cytodifferentiation and targets multi-signaling pathways in human dental papilla cells. PMID:23226240
Stabilization of human interferon-α1 mRNA by its antisense RNA. PMID:23224365
miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. PMID:23221645
Systematic screens of proteins binding to synthetic microRNA precursors. PMID:23221640
Zcchc11 uridylates mature miRNAs to enhance neonatal IGF-1 expression, growth, and survival. PMID:23209448
miRNA target enrichment analysis reveals directly active miRNAs in health and disease. PMID:23209027
Building a robust a-p axis. PMID:23204917
miRT: a database of validated transcription start sites of human microRNAs. PMID:23200141
One decade of development and evolution of microRNA target prediction algorithms. PMID:23200135
MicroRNAs in common human diseases. PMID:23200134
SomamiR: a database for somatic mutations impacting microRNA function in cancer. PMID:23180788
Identifying miRNAs, targets and functions. PMID:23175680
Bioinformatics Resource Manager v2.3: an integrated software environment for systems biology with microRNA and cross-species analysis tools. PMID:23174015
Expression of small RNA in Aphis gossypii and its potential role in the resistance interaction with melon. PMID:23173035
Human microRNAs originated from two periods at accelerated rates in mammalian evolution. PMID:23171859
Small RNA and transcriptome deep sequencing proffers insight into floral gene regulation in Rosa cultivars. PMID:23171001
The expression levels of microRNA-361-5p and its target VEGFA are inversely correlated in human cutaneous squamous cell carcinoma. PMID:23166713
Insect microRNAs: biogenesis, expression profiling and biological functions. PMID:23165178
miRNAs regulate expression and function of extracellular matrix molecules. PMID:23159731
MMpred: functional miRNA--mRNA interaction analyses by miRNA expression prediction. PMID:23151045
Genome sequences of wild and domestic bactrian camels. PMID:23149746
Computer-assisted annotation of murine Sertoli cell small RNA transcriptome. PMID:23136297
MicroRNA-302 increases reprogramming efficiency via repression of NR2F2. PMID:23136034
MicroRNAs differentially regulate carbonyl reductase 1 (CBR1) gene expression dependent on the allele status of the common polymorphic variant rs9024. PMID:23133646
Triple-helical recognition of RNA using 2-aminopyridine-modified PNA at physiologically relevant conditions. PMID:23125029
MicroRNA prediction using a fixed-order Markov model based on the secondary structure pattern. PMID:23118959
The inheritance pattern of 24 nt siRNA clusters in arabidopsis hybrids is influenced by proximity to transposable elements. PMID:23118865
smRNAome profiling to identify conserved and novel microRNAs in Stevia rebaudiana Bertoni. PMID:23116282
A Neuronal Transcriptome Response Involving Stress Pathways is Buffered by Neuronal microRNAs. PMID:23115547
Genome-wide identification of reverse complementary microRNA genes in plants. PMID:23110057
Computational methods for ab initio detection of microRNAs. PMID:23087705
PIWI Expression and Function in Cancer. PMID:23087701
Integration of SNP and mRNA arrays with microRNA profiling reveals that MiR-370 is upregulated and targets NF1 in acute myeloid leukemia. PMID:23077663
Cell-free Circulating miRNA Biomarkers in Cancer. PMID:23074383
Unexpected diversity and expression of avian endogenous retroviruses. PMID:23073767
Modeling the role of peroxisome proliferator-activated receptor γ and microRNA-146 in mucosal immune responses to Clostridium difficile. PMID:23071818
Circulating microRNA-92a and microRNA-21 as novel minimally invasive biomarkers for primary breast cancer. PMID:23052693
Functional characterization of Drosophila microRNAs by a novel in vivo library. PMID:23051640
MicroRNAs 125a and 455 repress lipoprotein-supported steroidogenesis by targeting scavenger receptor class B type I in steroidogenic cells. PMID:23045399
Comprehensive exploration of the effects of miRNA SNPs on monocyte gene expression. PMID:23029284
"Seed-Milarity" confers to hsa-miR-210 and hsa-miR-147b similar functional activity. PMID:23028679
A role for microRNA-155 modulation in the anti-HIV-1 effects of Toll-like receptor 3 stimulation in macrophages. PMID:23028330
Prenatal exposure to TCDD triggers significant modulation of microRNA expression profile in the thymus that affects consequent gene expression. PMID:23024791
Epigenetics of colorectal cancer. PMID:23000599
Dose-dependent differential mRNA target selection and regulation by let-7a-7f and miR-17-92 cluster microRNAs. PMID:22995834
Global alteration of microRNAs and transposon-derived small RNAs in cotton (Gossypium hirsutum) during Cotton leafroll dwarf polerovirus (CLRDV) infection. PMID:22987114
A global identification and analysis of small nucleolar RNAs and possible intermediate-sized non-coding RNAs in Oryza sativa. PMID:22986792
miR-127 protects proximal tubule cells against ischemia/reperfusion: identification of kinesin family member 3B as miR-127 target. PMID:22962609
The architecture of the gene regulatory networks of different tissues. PMID:22962474
On-line resources for Xenopus. PMID:22956109
The accessible chromatin landscape of the human genome. PMID:22955617
Profiling microRNAs in lung tissue from pigs infected with Actinobacillus pleuropneumoniae. PMID:22953717
Cigarette smoking decreases global microRNA expression in human alveolar macrophages. PMID:22952876
miRNA regulation of gene expression: a predictive bioinformatics analysis in the postnatally developing monkey hippocampus. PMID:22952683
Identification of novel targets for miR-29a using miRNA proteomics. PMID:22952654
MicroRNAs in ischemia-reperfusion injury. PMID:22937493
BRCA1 and microRNAs: emerging networks and potential therapeutic targets. PMID:22936386
Identification of miRNAs and their targets from Brassica napus by high-throughput sequencing and degradome analysis. PMID:22920854
MicroRNA Regulation of Cholesterol Metabolism. PMID:22919472
Distinctive microRNA profiles in the salivary glands of Haemaphysalis longicornis related to tick blood-feeding. PMID:22918721
Computational identification and functional predictions of long noncoding RNA in Zea mays. PMID:22916204
Single nucleotide polymorphisms can create alternative polyadenylation signals and affect gene expression through loss of microRNA-regulation. PMID:22915998
Regulation of colony stimulating factor-1 expression and ovarian cancer cell behavior in vitro by miR-128 and miR-152. PMID:22909061
Identification of common carp (Cyprinus carpio) microRNAs and microRNA-related SNPs. PMID:22908890
Respiratory syncytial virus modifies microRNAs regulating host genes that affect virus replication. PMID:22894925
Identification and characterization of small non-coding RNAs from Chinese fir by high throughput sequencing. PMID:22894611
Expression differences of circulating microRNAs in metastatic castration resistant prostate cancer and low-risk, localized prostate cancer. PMID:22887127
Barcoded cDNA library preparation for small RNA profiling by next-generation sequencing. PMID:22885844
Identification and validation of potential conserved microRNAs and their targets in peach (Prunus persica). PMID:22878892
The microRNA mir-71 inhibits calcium signaling by targeting the TIR-1/Sarm1 adaptor protein to control stochastic L/R neuronal asymmetry in C. elegans. PMID:22876200
Human developmental enhancers conserved between deuterostomes and protostomes. PMID:22876195
MicroRNAs in Amoebozoa: deep sequencing of the small RNA population in the social amoeba Dictyostelium discoideum reveals developmentally regulated microRNAs. PMID:22875808
AGO4 regulates entry into meiosis and influences silencing of sex chromosomes in the male mouse germline. PMID:22863743
Identification and characterization of argonaute protein, Ago2 and its associated small RNAs in Schistosoma japonicum. PMID:22860145
Perturbation of microRNAs in rat heart during chronic doxorubicin treatment. PMID:22859947
Contributions of mRNA abundance, ribosome loading, and post- or peri-translational effects to temporal repression of C. elegans heterochronic miRNA targets. PMID:22855835
The rectal cancer microRNAome--microRNA expression in rectal cancer and matched normal mucosa. PMID:22850566
Comprehensive microRNA profiling in B-cells of human centenarians by massively parallel sequencing. PMID:22846614
Novel microRNAs differentially expressed during aging in the mouse brain. PMID:22844398
Differential association of microRNAs with polysomes reflects distinct strengths of interactions with their mRNA targets. PMID:22836355
RAmiRNA: Software suite for generation of SVMbased prediction models of mature miRNAs. PMID:22829735
MicroRNA profiling in mucosal biopsies of eosinophilic esophagitis patients pre and post treatment with steroids and relationship with mRNA targets. PMID:22815788
A least angle regression model for the prediction of canonical and non-canonical miRNA-mRNA interactions. PMID:22815777
MicroRNA-503 and the extended microRNA-16 family in angiogenesis. PMID:22814423
Lung cancer: microRNA and target database. PMID:22814263
Differential microRNA response to a high-cholesterol, high-fat diet in livers of low and high LDL-C baboons. PMID:22809019
Identification of soybean microRNAs involved in soybean cyst nematode infection by deep sequencing. PMID:22802924
Identification of soybean seed developmental stage-specific and tissue-specific miRNA targets by degradome sequencing. PMID:22799740
miR2Gene: pattern discovery of single gene, multiple genes, and pathways by enrichment analysis of their microRNA regulators. PMID:22784580
Small RNA expression profiling by high-throughput sequencing: implications of enzymatic manipulation. PMID:22778911
miRNA-mRNA correlation-network modules in human prostate cancer and the differences between primary and metastatic tumor subtypes. PMID:22768240
MicroRNA transcriptomic analysis of heterosis during maize seed germination. PMID:22761829
Dre-miR-2188 targets Nrp2a and mediates proper intersegmental vessel development in zebrafish embryos. PMID:22761789
Genome-wide identification of Brassica napus microRNAs and their targets in response to cadmium. PMID:22760473
Myelin basic protein synthesis is regulated by small non-coding RNA 715. PMID:22744314
miR-26b promotes granulosa cell apoptosis by targeting ATM during follicular atresia in porcine ovary. PMID:22737216
Integrated analysis of microRNA expression and mRNA transcriptome in lungs of avian influenza virus infected broilers. PMID:22726614
Detection of simultaneous group effects in microRNA expression and related target gene sets. PMID:22723856
Skipping of exons by premature termination of transcription and alternative splicing within intron-5 of the sheep SCF gene: a novel splice variant. PMID:22719917
Non-Coding RNAs Regulating Morphine Function: With Emphasis on the In vivo and In vitro Functions of miR-190. PMID:22715342
Circulating microRNAs as novel and sensitive biomarkers of acute myocardial Infarction. PMID:22713968
Global Approaches to the Role of miRNAs in Drug-Induced Changes in Gene Expression. PMID:22707957
MicroRNAs and hepatitis C virus: toward the end of miR-122 supremacy. PMID:22691570
Regulation of iron homeostasis by microRNAs. PMID:22678662
Large-scale analysis of microRNA evolution. PMID:22672736
Regulated Expression of Chromobox Homolog 5 Revealed in Tumors of Apc(Min) (/+) ROSA11 Gene Trap Mice. PMID:22670227
Evidence for premature aging due to oxidative stress in iPSCs from Cockayne syndrome. PMID:22661500
MicroRNAs: molecular features and role in cancer. PMID:22652795
Transcripts with in silico predicted RNA structure are enriched everywhere in the mouse brain. PMID:22651826
MicroRNA-mRNA interactions in a murine model of hyperoxia-induced bronchopulmonary dysplasia. PMID:22646479
Integrative miRNA-mRNA profiling of adipose tissue unravels transcriptional circuits induced by sleep fragmentation. PMID:22629440
MAGIA²: from miRNA and genes expression data integrative analysis to microRNA-transcription factor mixed regulatory circuits (2012 update). PMID:22618880
Eri1 regulates microRNA homeostasis and mouse lymphocyte development and antiviral function. PMID:22613798
Relax with CouchDB--into the non-relational DBMS era of bioinformatics. PMID:22609849
Cis-acting polymorphisms affect complex traits through modifications of microRNA regulation pathways. PMID:22606281
O-miner: an integrative platform for automated analysis and mining of -omics data. PMID:22600742
Computational identification and experimental validation of microRNAs binding to the Alzheimer-related gene ADAM10. PMID:22594617
Novel miRNAs in the control of arsenite levels in rice. PMID:22585409
Rho GTPase regulation by miRNAs and covalent modifications. PMID:22572609
Potential pitfalls in microRNA profiling. PMID:22566380
Organ-specific testosterone-insensitive response of miRNA expression of C57BL/6 mice to Plasmodium chabaudi malaria. PMID:22562236
High-throughput sequencing of mGluR signaling pathway genes reveals enrichment of rare variants in autism. PMID:22558107
Integration of MicroRNA databases to study MicroRNAs associated with multiple sclerosis. PMID:22549745
Epigenetic control on cell fate choice in neural stem cells. PMID:22549586
Enhanced RAD21 cohesin expression confers poor prognosis in BRCA2 and BRCAX, but not BRCA1 familial breast cancers. PMID:22537934
MicroRNA genes and their target 3'-untranslated regions are infrequently somatically mutated in ovarian cancers. PMID:22536442
Differential expression of miRNAs in colorectal cancer: comparison of paired tumor tissue and adjacent normal mucosa using high-throughput sequencing. PMID:22529906
The interface of protein structure, protein biophysics, and molecular evolution. PMID:22528593
A cross-species analysis of microRNAs in the developing avian face. PMID:22523571
MicroRNA-301a regulation of a T-helper 17 immune response controls autoimmune demyelination. PMID:22517757
Diagnosis of pancreatic ductal adenocarcinoma and chronic pancreatitis by measurement of microRNA abundance in blood and tissue. PMID:22511932
MicroRNA profiling: approaches and considerations. PMID:22510765
Cigarette smoke exposure-associated alterations to non-coding RNA. PMID:22509180
miR-146a, an IL-1β responsive miRNA, induces vascular endothelial growth factor and chondrocyte apoptosis by targeting Smad4. PMID:22507670
A novel source for miR-21 expression through the alternative polyadenylation of VMP1 gene transcripts. PMID:22505577
Intestinal epithelial CD98 synthesis specifically modulates expression of colonic microRNAs during colitis. PMID:22499850
MicroRNA-22 can reduce parathymosin expression in transdifferentiated hepatocytes. PMID:22493679
Identification and characterization of microRNAs in Asiatic cotton (Gossypium arboreum L.). PMID:22493671
Identification and characterization of microRNAs from barley (Hordeum vulgare L.) by high-throughput sequencing. PMID:22489137
Transcriptome-wide identification and characterization of miRNAs from Pinus densata. PMID:22480283
Integrative analysis in oral squamous cell carcinoma reveals DNA copy number-associated miRNAs dysregulating target genes. PMID:22470160
MicroRNAs: Processing, Maturation, Target Recognition and Regulatory Functions. PMID:22468167
A 3' UTR SNP in COL18A1 is associated with susceptibility to HBV related hepatocellular carcinoma in Chinese: three independent case-control studies. PMID:22461898
IRES-Dependent Translational Control during Virus-Induced Endoplasmic Reticulum Stress and Apoptosis. PMID:22461781
The physiological impact of microRNA gene regulation in the retina. PMID:22460583
Next generation sequencing for profiling expression of miRNAs: technical progress and applications in drug development. PMID:22457835
MicroRNA-34a inhibits the proliferation and metastasis of osteosarcoma cells both in vitro and in vivo. PMID:22457788
Comparative analysis of human and mouse expression data illuminates tissue-specific evolutionary patterns of miRNAs. PMID:22457063
A genome-wide analysis of common fragile sites: what features determine chromosomal instability in the human genome? PMID:22456607
RIP-chip-SRM--a new combinatorial large-scale approach identifies a set of translationally regulated bantam/miR-58 targets in C. elegans. PMID:22454234
Transcription factors are targeted by differentially expressed miRNAs in primates. PMID:22454130
Annotation of primate miRNAs by high throughput sequencing of small RNA libraries. PMID:22453055
Canonical A-to-I and C-to-U RNA editing is enriched at 3'UTRs and microRNA target sites in multiple mouse tissues. PMID:22448268
Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets. PMID:22442676
microPIR: an integrated database of microRNA target sites within human promoter sequences. PMID:22439011
Identification of XMRV infection-associated microRNAs in four cell types in culture. PMID:22438885
Temporal- and strain-specific host microRNA molecular signatures associated with swine-origin H1N1 and avian-origin H7N7 influenza A virus infection. PMID:22438559
Identification of miRNAs in sorghum by using bioinformatics approach. PMID:22415044
Transcriptome-wide analysis of small RNA expression in early zebrafish development. PMID:22408181
A microRNA superfamily regulates nucleotide binding site-leucine-rich repeats and other mRNAs. PMID:22408077
Genome-wide analysis of microRNAs in rubber tree (Hevea brasiliensis L.) using high-throughput sequencing. PMID:22407387
Bioinformatic Resources of microRNA Sequences, Gene Targets, and Genetic Variation. PMID:22403585
Consistent isomiR expression patterns and 3' addition events in miRNA gene clusters and families implicate functional and evolutionary relationships. PMID:22391651
MicroRNA signature in patients with eosinophilic esophagitis, reversibility with glucocorticoids, and assessment as disease biomarkers. PMID:22391115
Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.). PMID:22388699
Deep-sequencing protocols influence the results obtained in small-RNA sequencing. PMID:22384282
MicroRNAs targeting oncogenes are down-regulated in pancreatic malignant transformation from benign tumors. PMID:22384141
Up-regulation of microRNA 506 leads to decreased Cl-/HCO3- anion exchanger 2 expression in biliary epithelium of patients with primary biliary cirrhosis. PMID:22383162
Functional complementation between transcriptional methylation regulation and post-transcriptional microRNA regulation in the human genome. PMID:22369656
Optimizing a massive parallel sequencing workflow for quantitative miRNA expression analysis. PMID:22363693
Microbial pattern recognition causes distinct functional micro-RNA signatures in primary human monocytes. PMID:22363568
DISC1 conditioned GWAS for psychosis proneness in a large Finnish birth cohort. PMID:22363459
A fast ab-initio method for predicting miRNA precursors in genomes. PMID:22362754
MicroRNA and transcription factor co-regulatory network analysis reveals miR-19 inhibits CYLD in T-cell acute lymphoblastic leukemia. PMID:22362744
Bottlenecks caused by software gaps in miRNA and RNAi research. PMID:22362409
Computational analysis of functional long noncoding RNAs reveals lack of peptide-coding capacity and parallels with 3' UTRs. PMID:22361292
Bioinformatic identification of cassava miRNAs differentially expressed in response to infection by Xanthomonas axonopodis pv. manihotis. PMID:22361011
miRTrail--a comprehensive webserver for analyzing gene and miRNA patterns to enhance the understanding of regulatory mechanisms in diseases. PMID:22356618
Identification of links between small molecules and miRNAs in human cancers based on transcriptional responses. PMID:22355792
MicroRNA dysregulation in cancer: diagnostics, monitoring and therapeutics. A comprehensive review. PMID:22351564
MiRNA genes constitute new targets for microsatellite instability in colorectal cancer. PMID:22348132
Computational analysis of mRNA expression profiles identifies microRNA-29a/c as predictor of colorectal cancer early recurrence. PMID:22348113
miRNA-mediated relationships between Cis-SNP genotypes and transcript intensities in lymphocyte cell lines. PMID:22348086
Identification of mouse serum miRNA endogenous references by global gene expression profiles. PMID:22348064
Large-scale identification of mirtrons in Arabidopsis and rice. PMID:22348048
Quantification of miRNA-mRNA interactions. PMID:22348024
Mass homozygotes accumulation in the NCI-60 cancer cell lines as compared to HapMap Trios, and relation to fragile site location. PMID:22347499
Identification of microRNA-regulated gene networks by expression analysis of target genes. PMID:22345618
Effective small RNA destruction by the expression of a short tandem target mimic in Arabidopsis. PMID:22345490
Comprehensive functional analyses of expressed sequence tags in common wheat (Triticum aestivum). PMID:22334568
Global microRNA level regulation of EGFR-driven cell-cycle protein network in breast cancer. PMID:22333974
Identification of novel microRNAs in Hevea brasiliensis and computational prediction of their targets. PMID:22330773
Target gene expression levels and competition between transfected and endogenous microRNAs are strong confounding factors in microRNA high-throughput experiments. PMID:22325809
A Novel YY1-miR-1 regulatory circuit in skeletal myogenesis revealed by genome-wide prediction of YY1-miRNA network. PMID:22319554
A new strategy for identification of highly conserved microRNAs in non-model insect, Spodoptera litura. PMID:22312275
Non-coding RNAs in retinal development. PMID:22312272
Effect of (S)-3,5-DHPG on microRNA expression in mouse brain. PMID:22309833
Accurate microRNA Target Prediction Using Detailed Binding Site Accessibility and Machine Learning on Proteomics Data. PMID:22303397
MIRNA-DISTILLER: A Stand-Alone Application to Compile microRNA Data from Databases. PMID:22303335
Systems Biology Reveals MicroRNA-Mediated Gene Regulation. PMID:22303325
Systematic Curation of miRBase Annotation Using Integrated Small RNA High-Throughput Sequencing Data for C. elegans and Drosophila. PMID:22303321
Roles of microRNAs and other non-coding RNAs in breast cancer metastasis. PMID:22293951
The viral and cellular microRNA targetome in lymphoblastoid cell lines. PMID:22291592
Computational identification of sweet wormwood (Artemisia annua) microRNA and their mRNA targets. PMID:22289476
Deep-sequencing of endothelial cells exposed to hypoxia reveals the complexity of known and novel microRNAs. PMID:22282338
Transcriptome and proteome research in veterinary science: what is possible and what questions can be asked? PMID:22262952
Integrative survival-based molecular profiling of human pancreatic cancer. PMID:22261810
Functional specialization of the plant miR396 regulatory network through distinct microRNA-target interactions. PMID:22242012
Structural bias in T4 RNA ligase-mediated 3'-adapter ligation. PMID:22241775
Differential expression patterns of conserved miRNAs and isomiRs during Atlantic halibut development. PMID:22233483
Comprehensive transcriptome analysis reveals novel genes involved in cardiac glycoside biosynthesis and mlncRNAs associated with secondary metabolism and stress response in Digitalis purpurea. PMID:22233149
Sculpting the maturation, softening and ethylene pathway: the influences of microRNAs on tomato fruits. PMID:22230737
Origins and evolution of microRNA genes in plant species. PMID:22223755
MicroRNA-195 plays a tumor-suppressor role in human glioblastoma cells by targeting signaling pathways involved in cellular proliferation and invasion. PMID:22217655
Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel. PMID:22216965
The murine caecal microRNA signature depends on the presence of the endogenous microbiota. PMID:22211115
Misexpression of testicular microRNA in sterile Xenopus hybrids points to tetrapod-specific microRNAs associated with male fertility. PMID:22207500
Comparative genomics of the anopheline glutathione S-transferase epsilon cluster. PMID:22206003
E-cadherin is transcriptionally activated via suppression of ZEB1 transcriptional repressor by small RNA-mediated gene silencing. PMID:22205962
The role of microRNAs in glioma initiation and progression. PMID:22201769
Adaptation to P element transposon invasion in Drosophila melanogaster. PMID:22196730
Expression of mir-21 and mir-143 in cervical specimens ranging from histologically normal through to invasive cervical cancer. PMID:22194833
Graph based fusion of miRNA and mRNA expression data improves clinical outcome prediction in prostate cancer. PMID:22188670
MiR-365 regulates lung cancer and developmental gene thyroid transcription factor 1. PMID:22185756
MicroRNA-200 is commonly repressed in conjunctival MALT lymphoma, and targets cyclin E2. PMID:22183793
MicroRNA miR-451 downregulates the PI3K/AKT pathway through CAB39 in human glioma. PMID:22179124
Studying microRNAs in the brain: technical lessons learned from the first ten years. PMID:22178329
Regulatory coordination of clustered microRNAs based on microRNA-transcription factor regulatory network. PMID:22176772
Metabolic and miRNA profiling of TMV infected plants reveals biphasic temporal changes. PMID:22174812
MicroRNA-mediated gene regulation plays a minor role in the transcriptomic plasticity of cold-acclimated zebrafish brain tissue. PMID:22168751
Computational methods for the identification of microRNA targets. PMID:22162940
Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity. PMID:22160515
Systematic analysis of genomic organization and heterogeneities of miRNA cluster in vertebrates. PMID:22160431
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage. PMID:22158467
In-silico human genomics with GeneCards. PMID:22155609
High-throughput sequencing of RNA silencing-associated small RNAs in olive (Olea europaea L.). PMID:22140484
SeqTar: an effective method for identifying microRNA guided cleavage sites from degradome of polyadenylated transcripts in plants. PMID:22140118
IGDB.NSCLC: integrated genomic database of non-small cell lung cancer. PMID:22139933
Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes. PMID:22138974
Microarray-based transcriptomic analysis of differences between long-term gregarious and solitarious desert locusts. PMID:22132225
Genome-wide identification of microRNAs in response to low nitrate availability in maize leaves and roots. PMID:22132192
Construction and analysis of an integrated regulatory network derived from high-throughput sequencing data. PMID:22125477
Characterization of NOL7 gene point mutations, promoter methylation, and protein expression in cervical cancer. PMID:22123719
Analysis of microRNA expression and function. PMID:22118279
miR-200c regulates FGFR-dependent epithelial proliferation via Vldlr during submandibular gland branching morphogenesis. PMID:22115756
Small RNA deep sequencing identifies microRNAs and other small noncoding RNAs from human herpesvirus 6B. PMID:22114334
Identification and characterization of microRNAs from peanut (Arachis hypogaea L.) by high-throughput sequencing. PMID:22110666
MaturePred: efficient identification of microRNAs within novel plant pre-miRNAs. PMID:22110646
Genome-wide profiling of novel and conserved Populus microRNAs involved in pathogen stress response by deep sequencing. PMID:22101925
Mutagen-specific mutation signature determines global microRNA binding. PMID:22096567
MicroRNA transgene overexpression complements deficiency-based modifier screens in Drosophila. PMID:22095085
Genome-wide functional analysis of the cotton transcriptome by creating an integrated EST database. PMID:22087239
Long noncoding intronic RNAs are differentially expressed in primary and metastatic pancreatic cancer. PMID:22078386
Low MAD2 expression levels associate with reduced progression-free survival in patients with high-grade serous epithelial ovarian cancer. PMID:22069160
Comparative analysis of miRNAs and their targets across four plant species. PMID:22067256
Performing custom microRNA microarray experiments. PMID:22064514
Network analysis of microRNAs and their regulation in human ovarian cancer. PMID:22050994
Quantitative bias in Illumina TruSeq and a novel post amplification barcoding strategy for multiplexed DNA and small RNA deep sequencing. PMID:22046424
Perturbation of 14q32 miRNAs-cMYC gene network in osteosarcoma. PMID:22037351
Synergistic post-transcriptional regulation of the Cystic Fibrosis Transmembrane conductance Regulator (CFTR) by miR-101 and miR-494 specific binding. PMID:22028919
First survey of the wheat chromosome 5A composition through a next generation sequencing approach. PMID:22028874
Expression and localization of microRNAs in perinatal rat pancreas: role of miR-21 in regulation of cholesterol metabolism. PMID:22022489
MicroRNA expression and regulation in human, chimpanzee, and macaque brains. PMID:22022286
Molecular basis of differential target regulation by miR-96 and miR-182: the Glypican-3 as a model. PMID:22009679
MicroRNA and AU-rich element regulation of prostaglandin synthesis. PMID:22005950
A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA. PMID:22000014
MiR-29a inhibits cell proliferation and induces cell cycle arrest through the downregulation of p42.3 in human gastric cancer. PMID:21998710
Influence of SLCO1B3 haplotype-tag SNPs on docetaxel disposition in Chinese nasopharyngeal cancer patients. PMID:21995462
Targeting microRNA-122 to Treat Hepatitis C Virus Infection. PMID:21994685
MicroRNA-137/181c regulates serine palmitoyltransferase and in turn amyloid β, novel targets in sporadic Alzheimer's disease. PMID:21994399
New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes. PMID:21994249
Comparative analysis of neural transcriptomes and functional implication of unannotated intronic expression. PMID:21985610
Alzheimer-specific variants in the 3'UTR of Amyloid precursor protein affect microRNA function. PMID:21982160
MicroRNAs associated with metastatic prostate cancer. PMID:21980368
Expression of miR-487b and miR-410 encoded by 14q32.31 locus is a prognostic marker in neuroblastoma. PMID:21970883
Ortho2ExpressMatrix--a web server that interprets cross-species gene expression data by gene family information. PMID:21970648
Distribution pattern of small RNA and degradome reads provides information on miRNA gene structure and regulation. PMID:21957499
A study of the evolution of human microRNAs by their apparent repression effectiveness on target genes. PMID:21957473
miR-25 targets TNF-related apoptosis inducing ligand (TRAIL) death receptor-4 and promotes apoptosis resistance in cholangiocarcinoma. PMID:21953056
RNAspace.org: An integrated environment for the prediction, annotation, and analysis of ncRNA. PMID:21947200
Performance comparison of exome DNA sequencing technologies. PMID:21947028
High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis. PMID:21940835
Conserved regulation of p53 network dosage by microRNA-125b occurs through evolving miRNA-target gene pairs. PMID:21935352
Integrated analysis of miRNA and mRNA expression in childhood medulloblastoma compared with neural stem cells. PMID:21931624
Repertoire of porcine microRNAs in adult ovary and testis by deep sequencing. PMID:21927574
Modeling the relative relationship of transcription factor binding and histone modifications to gene expression levels in mouse embryonic stem cells. PMID:21926158
MicroRNA destabilization enables dynamic regulation of the miR-16 family in response to cell-cycle changes. PMID:21925387
A primate herpesvirus uses the integrator complex to generate viral microRNAs. PMID:21925386
Identification and comparative analysis of drought-associated microRNAs in two cowpea genotypes. PMID:21923928
An integrative genomic approach identifies p73 and p63 as activators of miR-200 microRNA family transcription. PMID:21917857
miR-143 regulation of prostaglandin-endoperoxidase synthase 2 in the amnion: implications for human parturition at term. PMID:21915288
MiR-224 targets the 3'UTR of type 1 5'-iodothyronine deiodinase possibly contributing to tissue hypothyroidism in renal cancer. PMID:21912701
Reduced expression of brain-enriched microRNAs in glioblastomas permits targeted regulation of a cell death gene. PMID:21912681
Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle. PMID:21912509
Identification of aluminum-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing. PMID:21909758
Triple helical recognition of pyrimidine inversions in polypurine tracts of RNA by nucleobase-modified PNA. PMID:21909545
Weak seed-pairing stability and high target-site abundance decrease the proficiency of lsy-6 and other microRNAs. PMID:21909094
dsRNA expression in the mouse elicits RNAi in oocytes and low adenosine deamination in somatic cells. PMID:21908396
A global view of porcine transcriptome in three tissues from a full-sib pair with extreme phenotypes in growth and fat deposition by paired-end RNA sequencing. PMID:21906321
MYC protein inhibits transcription of the microRNA cluster MC-let-7a-1~let-7d via noncanonical E-box. PMID:21903590
Desmin regulates airway smooth muscle hypertrophy through early growth-responsive protein-1 and microRNA-26a. PMID:21903578
Current approaches to micro-RNA analysis and target gene prediction. PMID:21892624
Refining transcriptional programs in kidney development by integration of deep RNA-sequencing and array-based spatial profiling. PMID:21888672
miRTour: Plant miRNA and target prediction tool. PMID:21887016
MicroRNAs and their diverse functions in plants. PMID:21874378
MicroRNAs coordinately regulate protein complexes. PMID:21867514
MicroRNAs in thyroid cancer. PMID:21865360
Characterization and comparative profiling of MiRNA transcriptomes in bighead carp and silver carp. PMID:21858165
MIRTFnet: analysis of miRNA regulated transcription factors. PMID:21857930
The regulatory epicenter of miRNAs. PMID:21857109
Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development. PMID:21854559
Understanding the transcriptome through RNA structure. PMID:21850044
Deep sequencing of microRNA precursors reveals extensive 3' end modification. PMID:21849429
The Arabidopsis bZIP gene AtbZIP63 is a sensitive integrator of transient abscisic acid and glucose signals. PMID:21844310
Whole-exome sequencing identifies compound heterozygous mutations in WDR62 in siblings with recurrent polymicrogyria. PMID:21834044
Using modularly assembled ligands to bind RNA internal loops separated by different distances. PMID:21830289
Profiles of small non-coding RNAs in Schistosoma japonicum during development. PMID:21829742
Hormone-dependent expression of a steroidogenic acute regulatory protein natural antisense transcript in MA-10 mouse tumor Leydig cells. PMID:21829656
Comparative expression profile of miRNA and mRNA in primary peripheral blood mononuclear cells infected with human immunodeficiency virus (HIV-1). PMID:21829495
Identifying transcriptional start sites of human microRNAs based on high-throughput sequencing data. PMID:21821656
Why does the giant panda eat bamboo? A comparative analysis of appetite-reward-related genes among mammals. PMID:21818345
Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity. PMID:21813625
Analysis of the melon (Cucumis melo) small RNAome by high-throughput pyrosequencing. PMID:21812964
Clinical Significance of MicroRNA Expression Profiles and Polymorphisms in Lung Cancer Development and Management. PMID:21811665
Evidence for the complexity of microRNA-mediated regulation in ovarian cancer: a systems approach. PMID:21811625
Functional SNP in the microRNA-367 binding site in the 3'UTR of the calcium channel ryanodine receptor gene 3 (RYR3) affects breast cancer risk and calcification. PMID:21810988
NMD and microRNA expression profiling of the HPCX1 locus reveal MAGEC1 as a candidate prostate cancer predisposition gene. PMID:21810217
Deep sequencing of small RNAs from human skin reveals major alterations in the psoriasis miRNAome. PMID:21807764
The expression and functions of microRNAs in pancreatic adenocarcinoma and hepatocellular carcinoma. PMID:21801602
Expression and rhythmic modulation of circulating microRNAs targeting the clock gene Bmal1 in mice. PMID:21799909
Quantitative proteomics identify novel miR-155 target proteins. PMID:21799781
miRTar: an integrated system for identifying miRNA-target interactions in human. PMID:21791068
MicroRNA regulation of molecular networks mapped by global microRNA, mRNA, and protein expression in activated T lymphocytes. PMID:21788445
PAPD5, a noncanonical poly(A) polymerase with an unusual RNA-binding motif. PMID:21788334
miR-196 regulates axial patterning and pectoral appendage initiation. PMID:21787766
Targeted enrichment beyond the consensus coding DNA sequence exome reveals exons with higher variant densities. PMID:21787409
Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing. PMID:21762498
Coordinated post-transcriptional regulation of Hsp70.3 gene expression by microRNA and alternative polyadenylation. PMID:21757701
The members of an Epstein-Barr virus microRNA cluster cooperate to transform B lymphocytes. PMID:21752900
Barcoding bias in high-throughput multiplex sequencing of miRNA. PMID:21750102
MicroRNAs, diet, and cancer: new mechanistic insights on the epigenetic actions of phytochemicals. PMID:21739482
MicroRNAs in brain tumors : a new diagnostic and therapeutic perspective? PMID:21739238
Therapy-, gender- and race-specific microRNA markers, target genes and networks related to glioblastoma recurrence and survival. PMID:21737610
Genome sequence and global sequence variation map with 5.5 million SNPs in Chinese rhesus macaque. PMID:21733155
MicroRNA expression profiling reveals miRNA families regulating specific biological pathways in mouse frontal cortex and hippocampus. PMID:21731767
Regulation of gene expression in plants through miRNA inactivation. PMID:21731706
A comprehensive survey of miRNA repertoire and 3' addition events in the placentas of patients with pre-eclampsia from high-throughput sequencing. PMID:21731650
Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing. PMID:21729267
Downregulated kynurenine 3-monooxygenase gene expression and enzyme activity in schizophrenia and genetic association with schizophrenia endophenotypes. PMID:21727251
Specific sequence determinants of miR-15/107 microRNA gene group targets. PMID:21724616
The genome of the leaf-cutting ant Acromyrmex echinatior suggests key adaptations to advanced social life and fungus farming. PMID:21719571
A role for noncanonical microRNAs in the mammalian brain revealed by phenotypic differences in Dgcr8 versus Dicer1 knockouts and small RNA sequencing. PMID:21712401
Prediction of plant promoters based on hexamers and random triplet pair analysis. PMID:21711543
microRNA-Seq reveals cocaine-regulated expression of striatal microRNAs. PMID:21708909
Chromatin structure characteristics of pre-miRNA genomic sequences. PMID:21702984
Mini ways to stop a virus: microRNAs and HIV-1 replication. PMID:21701674
Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus. PMID:21699734
Impact of cellular miRNAs on circulating miRNA biomarker signatures. PMID:21698099
BioGraph: unsupervised biomedical knowledge discovery via automated hypothesis generation. PMID:21696594
Computational prediction of intronic microRNA targets using host gene expression reveals novel regulatory mechanisms. PMID:21694770
Inferring causative variants in microRNA target sites. PMID:21693556
Population differences in microRNA expression and biological implications. PMID:21691150
Drosha processing controls the specificity and efficiency of global microRNA expression. PMID:21683814
Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa. PMID:21679406
Circulating microRNAs: potential biomarkers for cancer. PMID:21673939
Characterization the regulation of herpesvirus miRNAs from the view of human protein interaction network. PMID:21668952
Identification of novel soybean microRNAs involved in abiotic and biotic stresses. PMID:21663675
Estrogen-regulated genes in rat testes and their relationship to recovery of spermatogenesis after irradiation. PMID:21653891
EGFR signals downregulate tumor suppressors miR-143 and miR-145 in Western diet-promoted murine colon cancer: role of G1 regulators. PMID:21653642
MicroRNAs in the human pituitary. PMID:21647843
Identification of potential microRNAs and their targets in Brassica rapa L. PMID:21647586
MicroRNA expression profiles of human blood monocyte-derived dendritic cells and macrophages reveal miR-511 as putative positive regulator of Toll-like receptor 4. PMID:21646346
g:Profiler--a web server for functional interpretation of gene lists (2011 update). PMID:21646343
Differentially regulated splice variants and systems biology analysis of Kaposi's sarcoma-associated herpesvirus-infected lymphatic endothelial cells. PMID:21646333
Emerging roles of chicken and viral microRNAs in avian disease. PMID:21645299
MicroRNAs in brain development and degeneration. PMID:21643950
Computational analysis of drought stress-associated miRNAs and miRNA co-regulation network in Physcomitrella patens. PMID:21641561
Exonic DNA sequencing of ERBB4 in bipolar disorder. PMID:21637803
Tracking miRNA precursor metabolic products and processing sites through completely analyzing high-throughput sequencing data. PMID:21633885
A growing molecular toolbox for the functional analysis of microRNAs in Caenorhabditis elegans. PMID:21624898
DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments. PMID:21622957
miRFam: an effective automatic miRNA classification method based on n-grams and a multiclass SVM. PMID:21619662
Genomic features and computational identification of human microRNAs under long-range developmental regulation. PMID:21619633
MicroRNA expression in the livers of inbred mice. PMID:21616085
Characterizing the role of miRNAs within gene regulatory networks using integrative genomics techniques. PMID:21613979
The role of the precursor structure in the biogenesis of microRNA. PMID:21607569
miRvestigator: web application to identify miRNAs responsible for co-regulated gene expression patterns discovered through transcriptome profiling. PMID:21602264
miR-200a regulates SIRT1 expression and epithelial to mesenchymal transition (EMT)-like transformation in mammary epithelial cells. PMID:21596753
Wolbachia uses host microRNAs to manipulate host gene expression and facilitate colonization of the dengue vector Aedes aegypti. PMID:21576469
Identification of microRNA precursors based on random forest with network-level representation method of stem-loop structure. PMID:21575268
Sequencing-based approaches reveal low ambient temperature-responsive and tissue-specific microRNAs in phalaenopsis orchid. PMID:21573107
Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis. PMID:21571671
MicroRNAs in the midst of myeloid signal transduction. PMID:21567394
Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis. PMID:21558790
mirConnX: condition-specific mRNA-microRNA network integrator. PMID:21558324
Divergence in cis-regulatory sequences surrounding the opsin gene arrays of African cichlid fishes. PMID:21554730
Deep sequencing of organ- and stage-specific microRNAs in the evolutionarily basal insect Blattella germanica (L.) (Dictyoptera, Blattellidae). PMID:21552535
The role of microRNAs in cholesterol efflux and hepatic lipid metabolism. PMID:21548778
Widespread expression of piRNA-like molecules in somatic tissues. PMID:21546553
Deficiency of X-linked inverted duplicates with male-biased expression and the underlying evolutionary mechanisms in the Drosophila genome. PMID:21546357
Methods and strategies for gene structure curation in WormBase. PMID:21543339
miRNAs stem cell reprogramming for neuronal induction and differentiation. PMID:21541853
Regulation of cancer aggressive features in melanoma cells by microRNAs. PMID:21541354
MicroRNAs dynamically remodel gastrointestinal smooth muscle cells. PMID:21533178
MicroRNA: Biogenesis, Function and Role in Cancer. PMID:21532838
Detection of human Dicer and Argonaute 2 catalytic activity. PMID:21528451
miR-365, a novel negative regulator of interleukin-6 gene expression, is cooperatively regulated by Sp1 and NF-kappaB. PMID:21518763
miRanalyzer: an update on the detection and analysis of microRNAs in high-throughput sequencing experiments. PMID:21515631
Shielding the messenger (RNA): microRNA-based anticancer therapies. PMID:21514318
Identification of miR-193b targets in breast cancer cells and systems biological analysis of their functional impact. PMID:21512034
Genome-wide characterization of new and drought stress responsive microRNAs in Populus euphratica. PMID:21511902
MicroRNA-192 targeting retinoblastoma 1 inhibits cell proliferation and induces cell apoptosis in lung cancer cells. PMID:21511813
IL-23 receptor regulation by Let-7f in human CD4+ memory T cells. PMID:21508257
HC-Pro silencing suppressor significantly alters the gene expression profile in tobacco leaves and flowers. PMID:21507209
MiRPara: a SVM-based software tool for prediction of most probable microRNA coding regions in genome scale sequences. PMID:21504621
MiR-21 plays an important role in radiation induced carcinogenesis in BALB/c mice by directly targeting the tumor suppressor gene Big-h3. PMID:21494432
Differential glucose-regulation of microRNAs in pancreatic islets of non-obese type 2 diabetes model Goto-Kakizaki rat. PMID:21490936
The functional role of long non-coding RNA in human carcinomas. PMID:21489289
Copy number variation of microRNA genes in the human genome. PMID:21486463
miRNA Biomarkers in Breast Cancer Detection and Management. PMID:21479130
Serum response factor-dependent MicroRNAs regulate gastrointestinal smooth muscle cell phenotypes. PMID:21473868
Analysis of the host microRNA response to Salmonella uncovers the control of major cytokines by the let-7 family. PMID:21468030
Rice-Map: a new-generation rice genome browser. PMID:21450055
Alternative splicing and nonsense-mediated RNA decay contribute to the regulation of SHOX expression. PMID:21448463
MicroRNA let-7 establishes expression of beta2-adrenergic receptors and dynamically down-regulates agonist-promoted down-regulation. PMID:21447718
miTALOS: analyzing the tissue-specific regulation of signaling pathways by human and mouse microRNAs. PMID:21441347
The Role of MicroRNA in Inflammatory Bowel Disease. PMID:21437020
IntmiR: a complete catalogue of intronic miRNAs of human and mouse. PMID:21423893
Dynamic changes in the microRNA expression profile reveal multiple regulatory mechanisms in the spinal nerve ligation model of neuropathic pain. PMID:21423802
Hypomethylation of intragenic LINE-1 represses transcription in cancer cells through AGO2. PMID:21423624
MicroRNAs are transported in plasma and delivered to recipient cells by high-density lipoproteins. PMID:21423178
Integrating microRNAs into a system biology approach to acute lung injury. PMID:21420028
Comprehensive sequence analysis of 24,783 barley full-length cDNAs derived from 12 clone libraries. PMID:21415278
Identification and characterization of maize microRNAs involved in the very early stage of seed germination. PMID:21414237
Identification and characterization of 63 MicroRNAs in the Asian seabass Lates calcarifer. PMID:21412421
Effect of Xpcl1 activation and p27(Kip1) loss on gene expression in murine lymphoma. PMID:21412408
Integrated microRNA and mRNA expression profiling in a rat colon carcinogenesis model: effect of a chemo-protective diet. PMID:21406606
Two-tiered approach identifies a network of cancer and liver disease-related genes regulated by miR-122. PMID:21402708
Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering. PMID:21392545
MicroRNA expression analysis: clinical advantage of propranolol reveals key microRNAs in myocardial infarction. PMID:21386882
MIR@NT@N: a framework integrating transcription factors, microRNAs and their targets to identify sub-network motifs in a meta-regulation network model. PMID:21375730
Temporal differences in microRNA expression patterns in astrocytes and neurons after ischemic injury. PMID:21373187
miRNA-mRNA integrated analysis reveals roles for miRNAs in primary breast tumors. PMID:21364938
High AU content: a signature of upregulated miRNA in cardiac diseases. PMID:21364793
NAViGaTing the micronome--using multiple microRNA prediction databases to identify signalling pathway-associated microRNAs. PMID:21364759
MicroRNAs in platelet production and activation. PMID:21364189
Nuclear and cytoplasmic localization of neural stem cell microRNAs. PMID:21363885
MicroRNA-183 family expression in hair cell development and requirement of microRNAs for hair cell maintenance and survival. PMID:21360794
ENCODE tiling array analysis identifies differentially expressed annotated and novel 5' capped RNAs in hepatitis C infected liver. PMID:21359205
Prediction of Associations between microRNAs and Gene Expression in Glioma Biology. PMID:21358821
Downregulated microRNAs in the differential diagnosis of malignant pleural mesothelioma. PMID:21351265
miR-27b*, an oxidative stress-responsive microRNA modulates nuclear factor-kB pathway in RAW 264.7 cells. PMID:21350856
Discovery of novel human breast cancer microRNAs from deep sequencing data by analysis of pri-microRNA secondary structures. PMID:21346806
Coregulation of transcription factors and microRNAs in human transcriptional regulatory network. PMID:21342573
GARNET--gene set analysis with exploration of annotation relations. PMID:21342555
Integrative analysis of next generation sequencing for small non-coding RNAs and transcriptional regulation in Myelodysplastic Syndromes. PMID:21342535
Practical Aspects of microRNA Target Prediction. PMID:21342132
Identification of common microRNA-mRNA regulatory biomodules in human epithelial cancers. PMID:21340045
Altered methylation at microRNA-associated CpG islands in hereditary and sporadic carcinomas: a methylation-specific multiplex ligation-dependent probe amplification (MS-MLPA)-based approach. PMID:21327300
A statistical framework for modeling gene expression using chromatin features and application to modENCODE datasets. PMID:21324173
Characterization of statistical features for plant microRNA prediction. PMID:21324149
Evolution and functional diversification of MIRNA genes. PMID:21317375
Human microRNA hsa-miR-125a-5p interferes with expression of hepatitis B virus surface antigen. PMID:21317190
Isoform-level microRNA-155 target prediction using RNA-seq. PMID:21317189
Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer. PMID:21307183
Regulation of mouse stomach development and Barx1 expression by specific microRNAs. PMID:21307095
Two-step cleavage of hairpin RNA with 5' overhangs by human DICER. PMID:21306637
MicroRNAs profiling in murine models of acute and chronic asthma: a relationship with mRNAs targets. PMID:21305051
MicroRNAs differentially expressed in postnatal aortic development downregulate elastin via 3' UTR and coding-sequence binding sites. PMID:21305018
Independent component and pathway-based analysis of miRNA-regulated gene expression in a model of type 1 diabetes. PMID:21294859
A microRNA-dependent program controls p53-independent survival and chemosensitivity in human and murine squamous cell carcinoma. PMID:21293058
MicroRNA-based Cancer Therapeutics: Big Hope from Small RNAs. PMID:21289871
Observation of miRNA gene expression in zebrafish embryos by in situ hybridization to microRNA primary transcripts. PMID:21288128
Neutral evolution of robustness in Drosophila microRNA precursors. PMID:21285032
Deep-sequencing of human Argonaute-associated small RNAs provides insight into miRNA sorting and reveals Argonaute association with RNA fragments of diverse origin. PMID:21282978
Cross-talk between miR-29 and transforming growth factor-betas in trabecular meshwork cells. PMID:21273536
Pre-processing and differential expression analysis of Agilent microRNA arrays using the AgiMicroRna Bioconductor library. PMID:21269452
Characterisation and expression of microRNAs in developing wings of the neotropical butterfly Heliconius melpomene. PMID:21266089
Measuring the evolutionary rewiring of biological networks. PMID:21253555
Identification of human miRNA precursors that resemble box C/D snoRNAs. PMID:21247878
Analysis of positional candidate genes in the AAA1 susceptibility locus for abdominal aortic aneurysms on chromosome 19. PMID:21247474
Role of microRNAs from monoclonal gammopathy of undetermined significance to multiple myeloma. PMID:21232657
ARTADE2DB: improved statistical inferences for Arabidopsis gene functions and structure predictions by dynamic structure-based dynamic expression (DSDE) analyses. PMID:21227933
Plant noncoding RNA gene discovery by "single-genome comparative genomics". PMID:21220549
Knockdown of miR-21 in human breast cancer cell lines inhibits proliferation, in vitro migration and in vivo tumor growth. PMID:21219636
Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing. PMID:21219599
MicroRNA evolution by arm switching. PMID:21212805
Molecular targets of alcohol action: Translational research for pharmacotherapy development and screening. PMID:21199775
Genome-wide approaches in the study of microRNA biology. PMID:21197653
A two-step site and mRNA-level model for predicting microRNA targets. PMID:21194446
Microarray-based analysis of microRNA expression in breast cancer stem cells. PMID:21192833
Evolutionary changes of the target sites of two microRNAs encoded in the Hox gene cluster of Drosophila and other insect species. PMID:21187351
The genome of Theobroma cacao. PMID:21186351
A systems genetic analysis of alcohol drinking by mice, rats and men: influence of brain GABAergic transmission. PMID:21185315
MiR-886-3p down regulates CXCL12 (SDF1) expression in human marrow stromal cells. PMID:21179442
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. PMID:21177976
Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data. PMID:21177971
Polycomb preferentially targets stalled promoters of coding and noncoding transcripts. PMID:21177970
Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence. PMID:21177969
Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans. PMID:21177960
mESAdb: microRNA expression and sequence analysis database. PMID:21177657
MiRenSVM: towards better prediction of microRNA precursors using an ensemble SVM classifier with multi-loop features. PMID:21172046
New methods for next generation sequencing based microRNA expression profiling. PMID:21171994
Genome-wide interrogation of Mammalian stem cell fate determinants by nested chromosome deletions. PMID:21170304
Evolution of microRNAs and the diversification of species. PMID:21169229
Gene processing control loops suggested by sequencing, splicing, and RNA folding. PMID:21167075
Altered expression of miRNA-21 and its targets in the hippocampus after traumatic brain injury. PMID:21162128
The emerging role of microRNAs in drug responses. PMID:21154161
RepTar: a database of predicted cellular targets of host and viral miRNAs. PMID:21149264
Identification of cis- and trans-regulatory variation modulating microRNA expression levels in human fibroblasts. PMID:21147911
Discovery and characterization of medaka miRNA genes by next generation sequencing platform. PMID:21143817
dbDEMC: a database of differentially expressed miRNAs in human cancers. PMID:21143814
Investigation gene and microRNA expression in glioblastoma. PMID:21143783
Vigilance and validation: Keys to success in RNAi screening. PMID:21142076
Differentially expressed miRNAs in the plasma may provide a molecular signature for aggressive pancreatic cancer. PMID:21139804
Investigation of the microRNAs in safflower seed, leaf, and petal by high-throughput sequencing. PMID:21136073
MiR-124 regulates early neurogenesis in the optic vesicle and forebrain, targeting NeuroD1. PMID:21131276
miRNAs in human cancer. PMID:21125669
Analyses of copy number variation of GK rat reveal new putative type 2 diabetes susceptibility loci. PMID:21124896
Murine hepatic miRNAs expression and regulation of gene expression in diet-induced obese mice. PMID:21120623
MicroRNAs-10a and -10b contribute to retinoic acid-induced differentiation of neuroblastoma cells and target the alternative splicing regulatory factor SFRS1 (SF2/ASF). PMID:21118818
Identification and analysis of seven H₂O₂-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica). PMID:21113019
lncRNAdb: a reference database for long noncoding RNAs. PMID:21112873
Identification of the transcriptional promoters in the proximal regions of human microRNA genes. PMID:21107707
Regulation of heme oxygenase-1 protein expression by miR-377 in combination with miR-217. PMID:21106538
Stage and tissue-specific modulation of ten conserved miRNAs and their targets during somatic embryogenesis of Valencia sweet orange. PMID:21103993
Microfluidic-based multiplex qRT-PCR identifies diagnostic and prognostic microRNA signatures in the sera of prostate cancer patients. PMID:21098088
LSD: a leaf senescence database. PMID:21097471
Dicer-independent, Ago2-mediated microRNA biogenesis in vertebrates. PMID:21088485
Hepatic miRNA expression reprogrammed by Plasmodium chabaudi malaria. PMID:21085987
Pre-clinical drug prioritization via prognosis-guided genetic interaction networks. PMID:21085674
Trisomy-21 gene dosage over-expression of miRNAs results in the haploinsufficiency of specific target proteins. PMID:21081842
miRTarBase: a database curates experimentally validated microRNA-target interactions. PMID:21071411
Critical association of ncRNA with introns. PMID:21071396
miRNA expression patterns of Triticum dicoccoides in response to shock drought stress. PMID:21069383
Quantitative studies of Epstein-Barr virus-encoded microRNAs provide novel insights into their regulation. PMID:21068248
Ultraconserved cDNA segments in the human transcriptome exhibit resistance to folding and implicate function in translation and alternative splicing. PMID:21062826
Rfam: Wikipedia, clans and the "decimal" release. PMID:21062808
MicroRNAs are mediators of androgen action in prostate and muscle. PMID:21048966
Enrichment of mRNA-like noncoding RNAs in the divergence of Drosophila males. PMID:21041796
Analysis of A to I editing of miRNA in macrophages exposed to Salmonella. PMID:21037424
Why mouse oocytes and early embryos ignore miRNAs? PMID:21037419
starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data. PMID:21037263
miRBase: integrating microRNA annotation and deep-sequencing data. PMID:21037258
Genomic analysis of microRNA time-course expression in liver of mice treated with genotoxic carcinogen N-ethyl-N-nitrosourea. PMID:21029445
Modified least-variant set normalization for miRNA microarray. PMID:20980676
Exprtarget: an integrative approach to predicting human microRNA targets. PMID:20975837
A computational-based update on microRNAs and their targets in barley (Hordeum vulgare L.). PMID:20969764
MicroRNA discovery and analysis of pinewood nematode Bursaphelenchus xylophilus by deep sequencing. PMID:20967259
Tomato Functional Genomics Database: a comprehensive resource and analysis package for tomato functional genomics. PMID:20965973
MiRonTop: mining microRNAs targets across large scale gene expression studies. PMID:20959382
Chromosomal redistribution of male-biased genes in mammalian evolution with two bursts of gene gain on the X chromosome. PMID:20957185
Identifying functional miRNA-mRNA regulatory modules with correspondence latent dirichlet allocation. PMID:20956247
The role of the blood transcriptome in innate inflammation and stroke. PMID:20955424
Global expression profiling of rice microRNAs by one-tube stem-loop reverse transcription quantitative PCR revealed important roles of microRNAs in abiotic stress responses. PMID:20941508
Statistical analysis strategies for association studies involving rare variants. PMID:20940738
Geoseq: a tool for dissecting deep-sequencing datasets. PMID:20939882
Next-generation sequencing identifies the natural killer cell microRNA transcriptome. PMID:20935160
Age-associated changes in miRNA expression profiles in thymopoiesis. PMID:20934450
MiRNA-miRNA synergistic network: construction via co-regulating functional modules and disease miRNA topological features. PMID:20929877
Common variants in the ATP2B1 gene are associated with susceptibility to hypertension: the Japanese Millennium Genome Project. PMID:20921432
A potential role for intragenic miRNAs on their hosts' interactome. PMID:20920310
Identification and characterization of microRNAs in Clonorchis sinensis of human health significance. PMID:20920166
Global microRNA characterization reveals that miR-103 is involved in IGF-1 stimulated mouse intestinal cell proliferation. PMID:20886090
Human traumatic brain injury alters plasma microRNA levels. PMID:20883153
microRNAs and cholesterol metabolism. PMID:20880716
Complete characterization of the microRNAome in a patient with acute myeloid leukemia. PMID:20876853
Complexity of the microRNA repertoire revealed by next-generation sequencing. PMID:20876832
NOVOMIR: De Novo Prediction of MicroRNA-Coding Regions in a Single Plant-Genome. PMID:20871826
Human miR-1271 is a miR-96 paralog with distinct non-conserved brain expression pattern. PMID:20864449
Characterization of Epstein-Barr virus miRNAome in nasopharyngeal carcinoma by deep sequencing. PMID:20862214
Genome-wide analysis of mRNA decay patterns during early Drosophila development. PMID:20858238
Plasma miR-216a as a potential marker of pancreatic injury in a rat model of acute pancreatitis. PMID:20857533
Tobacco microRNAs prediction and their expression infected with Cucumber mosaic virus and Potato virus X. PMID:20853150
Identification of microRNAs associated with ileal and colonic Crohn's disease. PMID:20848482
MicroRNA-218 is deleted and downregulated in lung squamous cell carcinoma. PMID:20838434
MicroRNA targeting in mammalian genomes: genes and mechanisms. PMID:20836019
A quantitative targeted proteomics approach to validate predicted microRNA targets in C. elegans. PMID:20835247
p53 activates the PANK1/miRNA-107 gene leading to downregulation of CDK6 and p130 cell cycle proteins. PMID:20833636
A negative regulatory loop between microRNA and Hox gene controls posterior identities in Caenorhabditis elegans. PMID:20824072
Classification of ncRNAs using position and size information in deep sequencing data. PMID:20823303
Large-scale data integration framework provides a comprehensive view on glioblastoma multiforme. PMID:20822536
Functional shifts in insect microRNA evolution. PMID:20817720
MicroRNA-24 targeting RNA-binding protein DND1 in tongue squamous cell carcinoma. PMID:20816961
Cycling exercise affects the expression of apoptosis-associated microRNAs after spinal cord injury in rats. PMID:20816819
Cooperative and individualistic functions of the microRNAs in the miR-23a~27a~24-2 cluster and its implication in human diseases. PMID:20815877
Global Egr1-miRNAs binding analysis in PMA-induced K562 cells using ChIP-Seq. PMID:20811575
MicroSNiPer: a web tool for prediction of SNP effects on putative microRNA targets. PMID:20809528
Dynamic isomiR regulation in Drosophila development. PMID:20805289
Identification and characterization of microRNAs and their target genes in tobacco (Nicotiana tabacum). PMID:20803216
Structural basis of microRNA length variety. PMID:20739353
Putative tumor suppressor miR-145 inhibits colon cancer cell growth by targeting oncogene Friend leukemia virus integration 1 gene. PMID:20737575
Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs. PMID:20733160
A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness. PMID:20719920
PmiRKB: a plant microRNA knowledge base. PMID:20719744
Canonical and alternate functions of the microRNA biogenesis machinery. PMID:20713509
microRNA miR-144 modulates oxidative stress tolerance and associates with anemia severity in sickle cell disease. PMID:20709907
Functional microRNA generated from a cytoplasmic RNA virus. PMID:20705652
Small RNAs control sodium channel expression, nociceptor excitability, and pain thresholds. PMID:20702715
Human SP-A1 (SFTPA1) variant-specific 3' UTRs and poly(A) tail differentially affect the in vitro translation of a reporter gene. PMID:20693318
MicroRNA-21 plays a role in hypoxia-mediated pulmonary artery smooth muscle cell proliferation and migration. PMID:20693317
Whole blood-derived miRNA profiles as potential new tools for ovarian cancer screening. PMID:20683447
Sizing up the future of microRNA analysis. PMID:20680616
The miR-15/107 group of microRNA genes: evolutionary biology, cellular functions, and roles in human diseases. PMID:20678503
MicroRNAs control intestinal epithelial differentiation, architecture, and barrier function. PMID:20659473
Global transcriptome profiling of wild soybean (Glycine soja) roots under NaHCO3 treatment. PMID:20653984
Alteration of microRNA profiles in squamous cell carcinoma of the head and neck cell lines by human papillomavirus. PMID:20652977
High affinity, dsRNA binding by disconnected interacting protein 1. PMID:20643095
MicroRNAome of porcine pre- and postnatal development. PMID:20634961
miRNA in pluripotent stem cells. PMID:20632858
Prediction of human targets for viral-encoded microRNAs by thermodynamics and empirical constraints. PMID:20628498
Annotating non-coding regions of the genome. PMID:20628352
Deep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata). PMID:20626894
RNAi-based strategies for cyclooxygenase-2 inhibition in cancer. PMID:20625420
Origins and evolution of microRNA genes in Drosophila species. PMID:20624724
Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans. PMID:20622877
Convergent evolution of chicken Z and human X chromosomes by expansion and gene acquisition. PMID:20622855
RNA-mediated trans-communication can establish paramutation at the b1 locus in maize. PMID:20616013
Detection of differentially expressed microRNAs in serum of pancreatic ductal adenocarcinoma patients: miR-196a could be a potential marker for poor prognosis. PMID:20614181
MicroRNAs as effectors of brain function with roles in ischemia and injury, neuroprotection, and neurodegeneration. PMID:20606686
Identifying gene regulatory networks in schizophrenia. PMID:20600988
Targeting breast cancer stem cells. PMID:20599450
Plant microRNAs and their role in defense against viruses: a bioinformatics approach. PMID:20594353
Important aspects of Toll-like receptors, ligands and their signaling pathways. PMID:20593217
Comprehensive survey of human brain microRNA by deep sequencing. PMID:20591156
Genome-wide computational identification and manual annotation of human long noncoding RNA genes. PMID:20587619
Selected microRNAs define cell fate determination of murine central memory CD8 T cells. PMID:20582165
Viral miRNAs: tools for immune evasion. PMID:20580307
Towards computational prediction of microRNA function and activity. PMID:20576699
Variability in the incidence of miRNAs and genes in fragile sites and the role of repeats and CpG islands in the distribution of genetic material. PMID:20567512
MicroRNAs in cardiovascular diseases: biology and potential clinical applications. PMID:20560047
Regulation of mammalian microRNA expression. PMID:20560040
Disease genes and gene regulation by microRNAs. PMID:20560036
Large-scale expression analysis reveals distinct microRNA profiles at different stages of human neurodevelopment. PMID:20559549
miR-802 regulates human angiotensin II type 1 receptor expression in intestinal epithelial C2BBe1 cells. PMID:20558762
DGCR8 recognizes primary transcripts of microRNAs through highly cooperative binding and formation of higher-order structures. PMID:20558544
Design and evaluation of genome-wide libraries for RNA interference screens. PMID:20550664
High-performance quantification of mature microRNAs by real-time RT-PCR using deoxyuridine-incorporated oligonucleotides and hemi-nested primers. PMID:20547774
MiR-RACE, a new efficient approach to determine the precise sequences of computationally identified trifoliate orange (Poncirus trifoliata) microRNAs. PMID:20539756
Naturally occurring variations in sequence length creates microRNA isoforms that differ in argonaute effector complex specificity. PMID:20534119
High-throughput miRNA profiling of human melanoma blood samples. PMID:20529253
Mechanical stretch up-regulates microRNA-26a and induces human airway smooth muscle hypertrophy by suppressing glycogen synthase kinase-3β. PMID:20525681
Prioritization of disease microRNAs through a human phenome-microRNAome network. PMID:20522252
MicroRNA networks in mouse lung organogenesis. PMID:20520778
Analysis of antisense expression by whole genome tiling microarrays and siRNAs suggests mis-annotation of Arabidopsis orphan protein-coding genes. PMID:20520764
The Ectocarpus genome and the independent evolution of multicellularity in brown algae. PMID:20520714
MicroRNA-deficient Schwann cells display congenital hypomyelination. PMID:20519547
MicroRNA-140 and the silencing of osteoarthritis. PMID:20516192
Transcriptomic analysis of dystrophin RNAi knockdown reveals a central role for dystrophin in muscle differentiation and contractile apparatus organization. PMID:20515474
Signatures of RNA binding proteins globally coupled to effective microRNA target sites. PMID:20508147
Evidence for natural antisense transcript-mediated inhibition of microRNA function. PMID:20507594
Structure of the dimerization domain of DiGeorge critical region 8. PMID:20506313
Identification of miRNA from Porphyra yezoensis by high-throughput sequencing and bioinformatics analysis. PMID:20502668
Downregulation of microRNA miR-520h by E1A contributes to anticancer activity. PMID:20501832
MicroRNA 125b inhibition of B cell differentiation in germinal centers. PMID:20497960
Discovery of microRNAs and other small RNAs in solid tumors. PMID:20483914
miR-31 functions as a negative regulator of lymphatic vascular lineage-specific differentiation in vitro and vascular development in vivo. PMID:20479124
mirTools: microRNA profiling and discovery based on high-throughput sequencing. PMID:20478827
MicroRNA-101 negatively regulates Ezh2 and its expression is modulated by androgen receptor and HIF-1alpha/HIF-1beta. PMID:20478051
Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma. PMID:20466808
Identification and characterization of microRNAs and their targets in the bioenergy plant switchgrass (Panicum virgatum). PMID:20461402
Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood. PMID:20459673
Yin Yang 1 phosphorylation contributes to the differential effects of mu-opioid receptor agonists on microRNA-190 expression. PMID:20457614
Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum. PMID:20444247
Reprogramming of miRNA networks in cancer and leukemia. PMID:20439436
Deciphering the porcine intestinal microRNA transcriptome. PMID:20433717
Molecular signaling in zebrafish development and the vertebrate phylotypic period. PMID:20433455
MicroRNA polymorphisms: a giant leap towards personalized medicine. PMID:20428464
The conserved miR-51 microRNA family is redundantly required for embryonic development and pharynx attachment in Caenorhabditis elegans. PMID:20421599
Improved microarray-based decision support with graph encoded interactome data. PMID:20419106
Module network inference from a cancer gene expression data set identifies microRNA regulated modules. PMID:20418949
Flanking region sequence information to refine microRNA target predictions. PMID:20413915
MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana. PMID:20407027
Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus. PMID:20407023
Chromosomal and microRNA expression patterns reveal biologically distinct subgroups of 11q- neuroblastoma. PMID:20406844
Identification of novel miRNAs and miRNA dependent developmental shifts of gene expression in Arabidopsis thaliana. PMID:20405016
Expression of microRNAs and its regulation in plants. PMID:20403450
Small RNA expression and strain specificity in the rat. PMID:20403161
Characterization of transcription start sites of putative non-coding RNAs by multifaceted use of massively paralleled sequencer. PMID:20400770
PuTmiR: a database for extracting neighboring transcription factors of human microRNAs. PMID:20398296
Chromosome 9p21 SNPs Associated with Multiple Disease Phenotypes Correlate with ANRIL Expression. PMID:20386740
High-risk myeloma is associated with global elevation of miRNAs and overexpression of EIF2C2/AGO2. PMID:20385818
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Specificity and functionality of microRNA inhibitors. PMID:20359337
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MapMi: automated mapping of microRNA loci. PMID:20233390
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Efficient inhibition of miR-155 function in vivo by peptide nucleic acids. PMID:20223773
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Current knowledge of MicroRNAs and noncoding RNAs in virus-infected cells. PMID:20217543
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Using Trawler_standalone to discover overrepresented motifs in DNA and RNA sequences derived from various experiments including chromatin immunoprecipitation. PMID:20134431
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miR-146a suppresses invasion of pancreatic cancer cells. PMID:20124483
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microRNAs in heart disease: putative novel therapeutic targets? PMID:20118173
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miR-17, miR-19b, miR-20a, and miR-106a are down-regulated in human aging. PMID:20089119
Identification and Function of MicroRNAs Encoded by Herpesviruses. PMID:20084183
A link between mir-100 and FRAP1/mTOR in clear cell ovarian cancer. PMID:20081105
Integrative genome analysis reveals an oncomir/oncogene cluster regulating glioblastoma survivorship. PMID:20080666
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miRMaid: a unified programming interface for microRNA data resources. PMID:20074352
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MicroRNA-204/211 alters epithelial physiology. PMID:20056717
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MicroRNA assassins: factors that regulate the disappearance of miRNAs. PMID:20051982
Post-transcriptional regulation of miR-27 in murine cytomegalovirus infection. PMID:20047990
The evolutionary-developmental analysis of plant microRNAs. PMID:20047873
Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.). PMID:20047695
RNA degradation compromises the reliability of microRNA expression profiling. PMID:20025722
Genome-wide profiling of populus small RNAs. PMID:20021695
Genomic organization of microRNAs. PMID:20020507
In silico method for systematic analysis of feature importance in microRNA-mRNA interactions. PMID:20015389
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Conservation of miR-15a/16-1 and miR-15b/16-2 clusters. PMID:20013340
MicroRNAs may mediate the down-regulation of neurokinin-1 receptor in chronic bladder pain syndrome. PMID:20008142
Revealing global regulatory perturbations across human cancers. PMID:20005852
Dissecting the dynamics of dysregulation of cellular processes in mouse mammary gland tumor. PMID:20003387
Deciphering the transcriptional circuitry of microRNA genes expressed during human monocytic differentiation. PMID:20003307
Exploring complex miRNA-mRNA interactions with Bayesian networks by splitting-averaging strategy. PMID:20003267
MicroRNAs align with accessible sites in target mRNAs. PMID:19998415
deepBase: a database for deeply annotating and mining deep sequencing data. PMID:19966272
MicroRNAs couple cell fate and developmental timing in retina. PMID:19965369
Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs. PMID:19961592
PDbase: a database of Parkinson's disease-related genes and genetic variation using substantia nigra ESTs. PMID:19958497
Plant polycistronic precursors containing non-homologous microRNAs target transcripts encoding functionally related proteins. PMID:19951405
High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera. PMID:19939267
A genome-wide characterization of microRNA genes in maize. PMID:19936050
MicroRNA profile of the developing mouse retina. PMID:19933188
COMIT: identification of noncoding motifs under selection in coding sequences. PMID:19930548
Non-codingRNA sequence variations in human chronic lymphocytic leukemia and colorectal cancer. PMID:19926640
Differential expression of miRNA patterns in renal cell carcinoma and nontumorous tissues. PMID:19921256
Discovery of microvascular miRNAs using public gene expression data: miR-145 is expressed in pericytes and is a regulator of Fli1. PMID:19917099
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Identification of microRNA activity by Targets' Reverse EXpression. PMID:19897564
Alternative splicing in the differentiation of human embryonic stem cells into cardiac precursors. PMID:19893621
Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach. PMID:19891781
Evidence that multiple genetic variants of MC4R play a functional role in the regulation of energy expenditure and appetite in Hispanic children. PMID:19889825
Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.). PMID:19889219
microRNAs and genetic diseases. PMID:19889204
Modulation of LMP2A expression by a newly identified Epstein-Barr virus-encoded microRNA miR-BART22. PMID:19881953
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MicroRNA: Implications for Alzheimer Disease and other Human CNS Disorders. PMID:19881909
MicroRNAs in C. elegans Aging: Molecular Insurance for Robustness? PMID:19881908
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MicroRNA regulation in Ames dwarf mouse liver may contribute to delayed aging. PMID:19878148
Therapeutic microRNA strategies in human cancer. PMID:19876744
MicroRNAs and epigenetic regulation in the mammalian inner ear: implications for deafness. PMID:19876605
Novel miR390-dependent transacting siRNA precursors in plants revealed by a PCR-based experimental approach and database analysis. PMID:19859540
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Functional analysis of a cellular microRNA in insect host-ascovirus interaction. PMID:19846520
Sequence-non-specific effects of RNA interference triggers and microRNA regulators. PMID:19843612
Review of current methodological approaches for characterizing microRNAs in plants. PMID:19834623
Computational identification and characteristics of novel microRNAs from the silkworm (Bombyx mori L.). PMID:19823945
miRExpress: analyzing high-throughput sequencing data for profiling microRNA expression. PMID:19821977
MicroRNA 132 regulates nutritional stress-induced chemokine production through repression of SirT1. PMID:19819989
Homology-based annotation of non-coding RNAs in the genomes of Schistosoma mansoni and Schistosoma japonicum. PMID:19814823
Combinatorial control of suicide gene expression by tissue-specific promoter and microRNA regulation for cancer therapy. PMID:19809402
miRNAs in lung cancer - studying complex fingerprints in patient's blood cells by microarray experiments. PMID:19807914
Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids. PMID:19805056
miR-145 directs intestinal maturation in zebrafish. PMID:19805048
MicroRNAs in the rhizobia legume symbiosis. PMID:19789286
Enrichment of a set of microRNAs during the cotton fiber development. PMID:19788742
Comparative characterization of a temperature responsive gene (lactate dehydrogenase-B, ldh-b) in two congeneric tropical fish, Lates calcarifer and Lates niloticus. PMID:19787021
Recent insights into the pathogenesis of colorectal cancer. PMID:19786869
MicroRNA expression profiling during the life cycle of the silkworm (Bombyx mori). PMID:19785751
An EST screen from the annelid Pomatoceros lamarckii reveals patterns of gene loss and gain in animals. PMID:19781084
Statistical use of argonaute expression and RISC assembly in microRNA target identification. PMID:19779550
Conserved expression patterns predict microRNA targets. PMID:19779543
Autism Genetic Database (AGD): a comprehensive database including autism susceptibility gene-CNVs integrated with known noncoding RNAs and fragile sites. PMID:19778453
Malate dehydrogenase is negatively regulated by miR-1 in Trichomonas vaginalis. PMID:19777264
Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules. PMID:19767456
Accurate microRNA target prediction correlates with protein repression levels. PMID:19765283
Repertoire and evolution of miRNA genes in four divergent nematode species. PMID:19755563
Reciprocal regulation of microRNA and mRNA profiles in neuronal development and synapse formation. PMID:19737397
A high throughput experimental approach to identify miRNA targets in human cells. PMID:19734348
Sequence features associated with microRNA strand selection in humans and flies. PMID:19732433
MicroRNA-208a is a regulator of cardiac hypertrophy and conduction in mice. PMID:19726871
The microRNA signature in response to insulin reveals its implication in the transcriptional action of insulin in human skeletal muscle and the role of a sterol regulatory element-binding protein-1c/myocyte enhancer factor 2C pathway. PMID:19720801
Reproducibility of quantitative RT-PCR array in miRNA expression profiling and comparison with microarray analysis. PMID:19715577
Systematic and single cell analysis of Xenopus Piwi-interacting RNAs and Xiwi. PMID:19713941
BatchGenAna: a batch platform for large-scale genomic analysis of mammalian small RNAs. PMID:19707298
The tiny world of microRNAs in the cross hairs of the mammalian eye. PMID:19706364
Silencing viral microRNA as a novel antiviral therapy? PMID:19704916
MicroRNA regulation of neuron-like differentiation of adipose tissue-derived stem cells. PMID:19695767
Acquisition of the contractile phenotype by murine arterial smooth muscle cells depends on the Mir143/145 gene cluster. PMID:19690389
Cell contact-dependent acquisition of cellular and viral nonautonomously encoded small RNAs. PMID:19684116
Loss of cardiac microRNA-mediated regulation leads to dilated cardiomyopathy and heart failure. PMID:19679836
Intrinsic expression of host genes and intronic miRNAs in prostate carcinoma cells. PMID:19674469
Computational identification of hepatitis C virus associated microRNA-mRNA regulatory modules in human livers. PMID:19671175
Coupled RNA processing and transcription of intergenic primary microRNAs. PMID:19667074
MicroPC (microPC): A comprehensive resource for predicting and comparing plant microRNAs. PMID:19660144
First step in pre-miRNAs processing by human Dicer. PMID:19654583
Role of Dicer in female fertility. PMID:19646895
MicroRNAs as Novel Biomarkers for Breast Cancer. PMID:19639033
Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection. PMID:19633723
Abundant and dynamically expressed miRNAs, piRNAs, and other small RNAs in the vertebrate Xenopus tropicalis. PMID:19628731
Differential micro RNA expression in PBMC from multiple sclerosis patients. PMID:19617918
SNPs in human miRNA genes affect biogenesis and function. PMID:19617315
Epigenetics in the placenta. PMID:19614624
Exploiting and antagonizing microRNA regulation for therapeutic and experimental applications. PMID:19609263
Tubulin polymerization-promoting protein (TPPP/p25) is critical for oligodendrocyte differentiation. PMID:19606501
MicroRNA-biogenesis and Pre-mRNA splicing crosstalk. PMID:19606257
Current molecular diagnostics of breast cancer and the potential incorporation of microRNA. PMID:19580430
Abundant conserved microRNA target sites in the 5'-untranslated region and coding sequence. PMID:19578934
Marsupial-specific microRNAs evolved from marsupial-specific transposable elements. PMID:19577616
Ontology-oriented retrieval of putative microRNAs in Vitis vinifera via GrapeMiRNA: a web database of de novo predicted grape microRNAs. PMID:19563653
Clustered microRNAs' coordination in regulating protein-protein interaction network. PMID:19558649
Defining genes: a computational framework. PMID:19557452
Oocytes and early embryos selectively express the survival factor BCL2L10. PMID:19551325
Methodologies for in vitro cloning of small RNAs and application for plant genome(s). PMID:19551152
Global prediction of tissue-specific gene expression and context-dependent gene networks in Caenorhabditis elegans. PMID:19543383
Disease-causing 7.4 kb cis-regulatory deletion disrupting conserved non-coding sequences and their interaction with the FOXL2 promotor: implications for mutation screening. PMID:19543368
MicroRNA expression in human airway smooth muscle cells: role of miR-25 in regulation of airway smooth muscle phenotype. PMID:19541842
MicroRNAs sound off. PMID:19519957
Genome-wide transcriptional profiling reveals microRNA-correlated genes and biological processes in human lymphoblastoid cell lines. PMID:19517021
Thermodynamic characterization of tandem mismatches found in naturally occurring RNA. PMID:19509311
Identification and analysis of miRNAs in human breast cancer and teratoma samples using deep sequencing. PMID:19508715
Reexamining microRNA site accessibility in Drosophila: a population genomics study. PMID:19478854
Predicting microRNA targets and functions: traps for the unwary. PMID:19478799
Lineage-specific biology revealed by a finished genome assembly of the mouse. PMID:19468303
GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information. PMID:19465387
The role of RNAi and microRNAs in animal virus replication and antiviral immunity. PMID:19451215
FASTR3D: a fast and accurate search tool for similar RNA 3D structures. PMID:19435878
Correlation of expression profiles between microRNAs and mRNA targets using NCI-60 data. PMID:19435500
Analytical methods for inferring functional effects of single base pair substitutions in human cancers. PMID:19434427
MicroRNA signatures predict oestrogen receptor, progesterone receptor and HER2/neu receptor status in breast cancer. PMID:19432961
Insights into the regulation of intrinsically disordered proteins in the human proteome by analyzing sequence and gene expression data. PMID:19432952
Predicting potential miRNA target sites within gene promoters. PMID:19423343
SNPinfo: integrating GWAS and candidate gene information into functional SNP selection for genetic association studies. PMID:19417063
miR-22 inhibits estrogen signaling by directly targeting the estrogen receptor alpha mRNA. PMID:19414598
WhichGenes: a web-based tool for gathering, building, storing and exporting gene sets with application in gene set enrichment analysis. PMID:19406925
MicroRNA-155 modulates the pathogen binding ability of dendritic cells (DCs) by down-regulation of DC-specific intercellular adhesion molecule-3 grabbing non-integrin (DC-SIGN). PMID:19386588
Post-transcriptional control of DGCR8 expression by the Microprocessor. PMID:19383765
Evidence for antisense transcription associated with microRNA target mRNAs in Arabidopsis. PMID:19381263
Pre-micro RNA signatures delineate stages of endothelial cell transformation in Kaposi sarcoma. PMID:19381257
Tiny RNAs associated with transcription start sites in animals. PMID:19377478
FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions. PMID:19374773
microRNA-24a is required to repress apoptosis in the developing neural retina. PMID:19372388
dbSMR: a novel resource of genome-wide SNPs affecting microRNA mediated regulation. PMID:19371411
MicroRNA signatures in liver diseases. PMID:19360909
Bioinformatics analysis suggests base modifications of tRNAs and miRNAs in Arabidopsis thaliana. PMID:19358740
Prediction of guide strand of microRNAs from its sequence and secondary structure. PMID:19358699
The evolution and application of techniques in molecular biology to human brain tumors: a 25 year perspective. PMID:19357954
Identification and characterization of new miRNAs cloned from normal mouse mammary gland. PMID:19351399
MicroRNAs in cholangiociliopathies. PMID:19342876
MicroRNA: a new frontier in kidney and blood pressure research. PMID:19339633
Dicer-1-dependent Dacapo suppression acts downstream of Insulin receptor in regulating cell division of Drosophila germline stem cells. PMID:19336466
New class of microRNA targets containing simultaneous 5'-UTR and 3'-UTR interaction sites. PMID:19336450
Regulation of the steroidogenic acute regulatory protein gene expression: present and future perspectives. PMID:19321517
Genomic landscape of developing male germ cells. PMID:19306351
Gene structures and processing of Arabidopsis thaliana HYL1-dependent pri-miRNAs. PMID:19304749
MicroRNA polymorphisms: the future of pharmacogenomics, molecular epidemiology and individualized medicine. PMID:19290790
Expression of microRNAs in cotton. PMID:19288227
microRNA 184 regulates expression of NFAT1 in umbilical cord blood CD4+ T cells. PMID:19286996
MicroRNAs in skeletogenesis. PMID:19273234
Rapid evolution of mammalian X-linked testis microRNAs. PMID:19257908
Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications. PMID:19255090
MicroRNA expression changes in lymphoblastoid cell lines in response to lithium treatment. PMID:19254429
miR-199a, a bone morphogenic protein 2-responsive MicroRNA, regulates chondrogenesis via direct targeting to Smad1. PMID:19251704
MicroRNAs as novel regulators of angiogenesis. PMID:19246688
Evolutionary origin and genomic organization of micro-RNA genes in immunoglobulin lambda variable region gene family. PMID:19246621
Selective stabilization of mammalian microRNAs by 3' adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2. PMID:19240131
Massive transcriptional start site analysis of human genes in hypoxia cells. PMID:19237398
Sex-different and growth hormone-regulated expression of microRNA in rat liver. PMID:19236699
Signatures of purifying and local positive selection in human miRNAs. PMID:19232555
MicroRNAs and micromanaging the skeleton in disease, development and evolution. PMID:19220576
The microRNAs of Epstein-Barr Virus are expressed at dramatically differing levels among cell lines. PMID:19217135
Altered microRNA expression in patients with non-obstructive azoospermia. PMID:19210773
MicroRNA transcriptome profiles during swine skeletal muscle development. PMID:19208255
Computational prediction of novel non-coding RNAs in Arabidopsis thaliana. PMID:19208137
Computational identification of condition-specific miRNA targets based on gene expression profiles and sequence information. PMID:19208135
A structural interpretation of the effect of GC-content on efficiency of RNA interference. PMID:19208134
Breast cancer metastasis suppressor 1 up-regulates miR-146, which suppresses breast cancer metastasis. PMID:19190326
MicroRNA and cancer--focus on apoptosis. PMID:19175697
MicroRNAs: target recognition and regulatory functions. PMID:19167326
Functional links between clustered microRNAs: suppression of cell-cycle inhibitors by microRNA clusters in gastric cancer. PMID:19153141
Small silencing RNAs: an expanding universe. PMID:19148191
The role of microRNAs (miRNA) in circadian rhythmicity. PMID:19147939
Characterization and comparative profiling of the small RNA transcriptomes in two phases of locust. PMID:19146710
Epigenetic and microRNA-mediated regulation in diabetes. PMID:19145005
MicroRNA regulation of DNA repair gene expression in hypoxic stress. PMID:19141645
Decreased levels of microRNA miR-122 in individuals with hepatitis C responding poorly to interferon therapy. PMID:19122656
miRNA regulation of cytokine genes. PMID:19121586
DGCR8-dependent microRNA biogenesis is essential for skin development. PMID:19114655
Quality assessment and data analysis for microRNA expression arrays. PMID:19103660
Conservation and implications of eukaryote transcriptional regulatory regions across multiple species. PMID:19099599
Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development. PMID:19096705
Identification of glucose-regulated miRNAs from pancreatic {beta} cells reveals a role for miR-30d in insulin transcription. PMID:19096044
Cellular versus viral microRNAs in host-virus interaction. PMID:19095692
Finding microRNA regulatory modules in human genome using rule induction. PMID:19091028
Using a kernel density estimation based classifier to predict species-specific microRNA precursors. PMID:19091019
Criteria for annotation of plant MicroRNAs. PMID:19074682
Gene expression and hepatitis C virus infection. PMID:19074178
Virus-specific host miRNAs: antiviral defenses or promoters of persistent infection? PMID:19059006
Right into the heart of microRNA-133a. PMID:19056878
Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice. PMID:19055717
Annotation of mammalian primary microRNAs. PMID:19038026
MicroRNAs: control and loss of control in human physiology and disease. PMID:19030926
Non-coding RNAs revealed during identification of genes involved in chicken immune responses. PMID:19009289
Shhh! Silencing by microRNA-155. PMID:19008191
Regulation of the mammalian nervous system by microRNAs. PMID:19004981
The UCSC Genome Browser Database: update 2009. PMID:18996895
miRecords: an integrated resource for microRNA-target interactions. PMID:18996891
The Rat Genome Database 2009: variation, ontologies and pathways. PMID:18996890
Thermodynamic stability and Watson-Crick base pairing in the seed duplex are major determinants of the efficiency of the siRNA-based off-target effect. PMID:18988625
MiR-433 and miR-127 arise from independent overlapping primary transcripts encoded by the miR-433-127 locus. PMID:18974780
Rfam: updates to the RNA families database. PMID:18953034
Prediction of human miRNAs using tissue-selective motifs in 3' UTRs. PMID:18952845
Differential expression of miRNAs in response to salt stress in maize roots. PMID:18952624
The Functional RNA Database 3.0: databases to support mining and annotation of functional RNAs. PMID:18948287
miROrtho: computational survey of microRNA genes. PMID:18927110
miR2Disease: a manually curated database for microRNA deregulation in human disease. PMID:18927107
The evolution of RNAi as a defence against viruses and transposable elements. PMID:18926973
Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs. PMID:18923076
CoGemiR: a comparative genomics microRNA database. PMID:18837977
Selection and mutation on microRNA target sequences during rice evolution. PMID:18831738
Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals. PMID:18830242
A novel biochemical method to identify target genes of individual microRNAs: identification of a new Caenorhabditis elegans let-7 target. PMID:18824511
MicroRNA biogenesis: there's more than one way to skin a cat. PMID:18778799
The long and short of inverted repeat genes in animals: microRNAs, mirtrons and hairpin RNAs. PMID:18769156
Hormonal regulation of MicroRNA expression in periovulatory mouse mural granulosa cells. PMID:18716288
The evolution and functional diversification of animal microRNA genes. PMID:18711447
Evidence for selective microRNAs and their effectors as common long-term targets for the actions of mood stabilizers. PMID:18704095
miR-16 family induces cell cycle arrest by regulating multiple cell cycle genes. PMID:18701644
The emergent role of microRNAs in molecular diagnostics of cancer. PMID:18687791
Collection and comparative analysis of 1888 full-length cDNAs from wild rice Oryza rufipogon Griff. W1943. PMID:18687674
The impact of microRNAs on protein output. PMID:18668037
Sequence relationships among C. elegans, D. melanogaster and human microRNAs highlight the extensive conservation of microRNAs in biology. PMID:18665242
Circulating microRNAs as stable blood-based markers for cancer detection. PMID:18663219
A set of differentially expressed miRNAs, including miR-30a-5p, act as post-transcriptional inhibitors of BDNF in prefrontal cortex. PMID:18632683
Changes in prostate gene expression in men undergoing an intensive nutrition and lifestyle intervention. PMID:18559852
Identification and characterization of new microRNAs from pig. PMID:18548309
Viral and cellular microRNAs as determinants of viral pathogenesis and immunity. PMID:18541214
Expression of microRNAs during embryonic development of Xenopus tropicalis. PMID:18440877
Interspecies regulation of microRNAs and their targets. PMID:18407843
MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs. PMID:18256158
miRBase: microRNA sequences, targets and gene nomenclature PubMed citations: 2101.

2101 articles citing: miRBase: microRNA sequences, targets and gene nomenclature

Transcriptome analysis revealed gene expression feminization of testis after exogenous tetrodotoxin administration in pufferfish Takifugu flavidus. PMID:35922761
Sequence-Specific Features of Short Double-Strand, Blunt-End RNAs Have RIG-I- and Type 1 Interferon-Dependent or -Independent Anti-Viral Effects. PMID:35891387
Isolation and Comprehensive in Silico Characterisation of a New 3-Hydroxy-3-Methylglutaryl-Coenzyme A Reductase 4 (HMGR4) Gene Promoter from Salvia miltiorrhiza: Comparative Analyses of Plant HMGR Promoters. PMID:35890495
MicroRNA Processing Pathway-Based Polygenic Score for Clear Cell Renal Cell Carcinoma in the Volga-Ural Region Populations of Eurasian Continent. PMID:35886064
Micro (mi) RNA and Diabetic Retinopathy. PMID:35873619
MicroRNA-mediated regulation of lipid metabolism in virus-infected Emiliania huxleyi. PMID:35869388
Differential expression profile of plasma exosomal microRNAs in acute type A aortic dissection with acute lung injury. PMID:35804020
Differential expression of non-coding RNAs and association with cerebral ischemic vascular disorders; diagnostic and therapeutic opportunities. PMID:35802344
Identification and integrated analysis of lncRNAs and miRNAs in IPEC-J2 cells provide novel insight into the regulation of the innate immune response by PDCoV infection. PMID:35787252
Molecular Dissection of a Conserved Cluster of miRNAs Identifies Critical Structural Determinants That Mediate Differential Processing. PMID:35784477
The paradoxical roles of miR-4295 in human cancer: Implications in pathogenesis and personalized medicine. PMID:35782974
Differentially Expressed Bone Marrow microRNAs Are Associated With Soluble HLA-G Bone Marrow Levels in Childhood Leukemia. PMID:35774498
A Novel miRNA Located in the HER2 Gene Shows an Inhibitory Effect on Wnt Signaling and Cell Cycle Progression. PMID:35747498
Role of MicroRNAs in Signaling Pathways Associated with the Pathogenesis of Idiopathic Pulmonary Fibrosis: A Focus on Epithelial-Mesenchymal Transition. PMID:35743055
Immunomodulatory Properties of Human Breast Milk: MicroRNA Contents and Potential Epigenetic Effects. PMID:35740242
De novo assembly provides new insights into the evolution of Elaeagnus angustifolia L. PMID:35717244
Salivary miRNA Expression in Children With Persistent Post-concussive Symptoms. PMID:35712307
Aminoflavone upregulates putative tumor suppressor miR-125b-2-3p to inhibit luminal A breast cancer stem cell-like properties. PMID:35694715
A miRNAs catalogue from third-stage larvae and extracellular vesicles of Anisakis pegreffii provides new clues for host-parasite interplay. PMID:35690629
The MicroRNA-signaling-peroxisome proliferator-activated receptor gamma connection in the modulation of adipogenesis: bioinformatics projection on chicken. PMID:35689996
Integrative RNA profiling of TBEV-infected neurons and astrocytes reveals potential pathogenic effectors. PMID:35685361
A transcriptomic atlas underlying developmental plasticity of seasonal forms of Bicyclus anynana butterflies. PMID:35679434
Detection of features predictive of microRNA targets by integration of network data. PMID:35679295
Endometriosis Associated-miRNome Analysis of Blood Samples: A Prospective Study. PMID:35626305
The signaling pathway of levamisole-sensitive-acetylcholine receptors involved in short-term forgetting of Caenorhabditis elegans. PMID:35585325
Circulating non-coding RNAs in recurrent and metastatic ovarian cancer. PMID:35582568
Unique circulating microRNA profiles in epidemic Kaposi's sarcoma. PMID:35570854
RNA-Seq, Bioinformatic Identification of Potential MicroRNA-like Small RNAs in the Edible Mushroom Agaricus bisporus and Experimental Approach for Their Validation. PMID:35563314
The Role of Epigenetics in Primary Biliary Cholangitis. PMID:35563266
Identifying the Caenorhabditis elegans vulval transcriptome. PMID:35551383
Chromosome-level genome assembly of Asian yellow pond turtle (Mauremys mutica) with temperature-dependent sex determination system. PMID:35550586
Gaur genome reveals expansion of sperm odorant receptors in domesticated cattle. PMID:35508966
MicroRNA Profiling of the Tears of Children With Vernal Keratoconjunctivitis. PMID:35495169
Fluvalinate-Induced Changes in MicroRNA Expression Profile of Apis mellifera ligustica Brain Tissue. PMID:35495168
Seminal plasma piRNA array analysis and identification of possible biomarker piRNAs for the diagnosis of asthenozoospermia. PMID:35493429
Intramolecular ligation method (iLIME) for pre-miRNA quantification and sequencing. PMID:35487691
Whole-Genome-Based Web Genomic Resource for Water Buffalo (Bubalus bubalis). PMID:35480326
Exosomal mediated signal transduction through artificial microRNA (amiRNA): A potential target for inhibition of SARS-CoV-2. PMID:35461900
Suicide and Changes in Expression of Neuronal miRNA Predicted by an Algorithm Search through miRNA Databases. PMID:35456368
A microRNA Transcriptome-wide Association Study of Prostate Cancer Risk. PMID:35432445
Circulating microRNAs in Medicine. PMID:35409354
Biogenesis, Functions, Interactions, and Resources of Non-Coding RNAs in Plants. PMID:35409060
How miRNAs Regulate Schwann Cells during Peripheral Nerve Regeneration-A Systemic Review. PMID:35408800
Circulating small RNA signatures differentiate accurately the subtypes of muscular dystrophies: small-RNA next-generation sequencing analytics and functional insights. PMID:35388741
Whole-genome sequencing reveals that variants in the Interleukin 18 Receptor Accessory Protein 3'UTR protect against ALS. PMID:35361972
Selective cleavage of ncRNA and antiviral activity by RNase2/EDN in THP1-induced macrophages. PMID:35347428
Evidence of antagonistic predictive effects of miRNAs in breast cancer cohorts through data-driven networks. PMID:35338170
An Alternative Class of Targets for microRNAs Containing CG Dinucleotide. PMID:35336851
microRNA profile of Hermetia illucens (black soldier fly) and its implications on mass rearing. PMID:35298540
Hatching is modulated by microRNA-378a-3p derived from extracellular vesicles secreted by blastocysts. PMID:35298333
SCAPE: a mixture model revealing single-cell polyadenylation diversity and cellular dynamics during cell differentiation and reprogramming. PMID:35288753
Changes in the Mitochondrial Dynamics and Functions Together with the mRNA/miRNA Network in the Heart Tissue Contribute to Hypoxia Adaptation in Tibetan Sheep. PMID:35268153
Hsa_circ_0000418 promotes the progression of glioma by regulating microRNA-409-3p / pyruvate dehydrogenase kinase 1 axis. PMID:35264067
Computing microRNA-gene interaction networks in pan-cancer using miRDriver. PMID:35260634
Regulation of collagen deposition in the trout heart during thermal acclimation. PMID:35243359
Transcriptome sequencing and lncRNA-miRNA-mRNA network construction in cardiac fibrosis and heart failure. PMID:35235759
Developmental Regulation and Functional Prediction of microRNAs in an Expanded Fasciola hepatica miRNome. PMID:35223544
Integrative Analysis of the lncRNA-Associated ceRNA Regulatory Network Response to Hypoxia in Alveolar Type II Epithelial Cells of Tibetan Pigs. PMID:35211545
MiR-24-3p Conservatively Regulates Muscle Cell Proliferation and Apoptosis by Targeting Common Gene CAMK2B in Rat and Cattle. PMID:35203213
A functional screen with metformin identifies microRNAs that regulate metabolism in colorectal cancer cells. PMID:35190587
TRmir: A Comprehensive Resource for Human Transcriptional Regulatory Information of MiRNAs. PMID:35186035
New Insights into Mitochondrial-Nuclear Interactions Revealed through Analysis of Small RNAs. PMID:35143645
Expression Profiles of Estrogen-Regulated MicroRNAs in Cancer Cells. PMID:35119673
Characterization of microRNA expression profiles by deep sequencing of small RNA libraries in leukemia patients from Naxi ethnic. PMID:35116745
Answer ALS, a large-scale resource for sporadic and familial ALS combining clinical and multi-omics data from induced pluripotent cell lines. PMID:35115730
pH dependence of C•A, G•A and A•A mismatches in the stem of precursor microRNA-31. PMID:35114594
DNA-encoded library versus RNA-encoded library selection enables design of an oncogenic noncoding RNA inhibitor. PMID:35110406
Systematic Review: microRNAs as Potential Biomarkers in Mild Cognitive Impairment Diagnosis. PMID:35095478
Human microRNA (miR-20b-5p) modulates Alzheimer's disease pathways and neuronal function, and a specific polymorphism close to the MIR20B gene influences Alzheimer's biomarkers. PMID:35087196
Differential Expression of lncRNAs and miRNAs Between Self-Rooting Juvenile and Donor Clones Unveils Novel Insight Into the Molecular Regulation of Rubber Biosynthesis in Hevea brasiliensis. PMID:35069613
Differential microRNA expression profile in blood of children with Down syndrome suggests a role in immunological dysfunction. PMID:35060072
Characterization of miRNAs in Embryonic, Larval, and Adult Lumpfish Provides a Reference miRNAome for Cyclopterus lumpus. PMID:35053128
Transfer RNA-Derived Fragments and isomiRs Are Novel Components of Chronic TBI-Induced Neuropathology. PMID:35052815
In silico identification of sugarcane (Saccharum officinarum L.) genome encoded microRNAs targeting sugarcane bacilliform virus. PMID:35051194
Evaluation of exosomal non-coding RNAs in cancer using high-throughput sequencing. PMID:35033106
Chromosome-level genome assembly of Bactrocera dorsalis reveals its adaptation and invasion mechanisms. PMID:35017661
Altered White Matter and microRNA Expression in a Murine Model Related to Williams Syndrome Suggests That miR-34b/c Affects Brain Development via Ptpru and Dcx Modulation. PMID:35011720
The Study of Cerebrospinal Fluid microRNAs in Spinal Cord Injury and Neurodegenerative Diseases: Methodological Problems and Possible Solutions. PMID:35008540
Orange Juice Attenuates Circulating miR-150-5p, miR-25-3p, and miR-451a in Healthy Smokers: A Randomized Crossover Study. PMID:35004810
In Silico Investigation of Conserved miRNAs and Their Targets From the Expressed Sequence Tags in Neospora Caninum Genome. PMID:34898982
Distinct small non-coding RNA landscape in the axons and released extracellular vesicles of developing primary cortical neurons and the axoplasm of adult nerves. PMID:34882524
Human miRNA miR-675 inhibits DUX4 expression and may be exploited as a potential treatment for Facioscapulohumeral muscular dystrophy. PMID:34880230
MYCN in Neuroblastoma: "Old Wine into New Wineskins". PMID:34842635
Inhibition of miR-155 Promotes TGF-β Mediated Suppression of HIV Release in the Cervical Epithelial Cells. PMID:34835072
miRGalaxy: Galaxy-Based Framework for Interactive Analysis of microRNA and isomiR Sequencing Data. PMID:34830818
Identification and Characterization of Downy Mildew-Responsive microRNAs in Indian Vitis vinifera by High-Throughput Sequencing. PMID:34829189
Genome-Wide Identification and Functional Exploration of SBP-Box Gene Family in Black Pepper (Piper nigrum L.). PMID:34828347
Potential of miRNAs in urinary extracellular vesicles for management of active surveillance in prostate cancer patients. PMID:34811506
Circulating miRNAs associated with bone mineral density in healthy adult baboons. PMID:34799865
MicroRNAs affect GPCR and Ion channel genes needed for influenza replication. PMID:34787540
Downregulation of lncRNA PpL-T31511 and Pp-miRn182 Promotes Hydrogen Cyanamide-Induced Endodormancy Release through the PP2C-H2O2 Pathway in Pear (Pyrus pyrifolia). PMID:34769273
An integrated multi-omic analysis of iPSC-derived motor neurons from C9ORF72 ALS patients. PMID:34746695
Genome and systems biology of Melilotus albus provides insights into coumarins biosynthesis. PMID:34717292
Reduced expression of miR-30c-5p promotes hepatocellular carcinoma progression by targeting RAB32. PMID:34703646
MicroRNA Isoforms Contribution to Melanoma Pathogenesis. PMID:34698264
The Expression Regulatory Network in the Lung Tissue of Tibetan Pigs Provides Insight Into Hypoxia-Sensitive Pathways in High-Altitude Hypoxia. PMID:34691141
MicroRNAs in the Onset of Schizophrenia. PMID:34685659
Integrated analysis of dysregulated microRNA and mRNA expression in intestinal epithelial cells following ethanol intoxication and burn injury. PMID:34642361
Nuclear Pore Glycoprotein 62 Genetic Variant rs9523 is Associated with Clinical Outcomes of Epidermal Growth Factor Receptor Tyrosine Kinase Inhibitors in Lung Adenocarcinoma Patients. PMID:34629889
SNX20AR/MiRNA-301a-3p/SNX20 Axis Associated With Cell Proliferation and Immune Infiltration in Lung Adenocarcinoma. PMID:34604311
Isolation and characterization of urine microvesicles from prostate cancer patients: different approaches, different visions. PMID:34579682
Uncovering miRNA-mRNA Regulatory Modules in Developing Xylem of Pinus massoniana via Small RNA and Degradome Sequencing. PMID:34576316
Differentially Regulated miRNAs and Their Related Molecular Pathways in Lichen Sclerosus. PMID:34571940
Comprehensive Transcriptome Analyses in Sea Louse Reveal Novel Delousing Drug Responses Through MicroRNA regulation. PMID:34564738
Revelation of candidate genes and molecular mechanism of reproductive seasonality in female rohu (Labeo rohita Ham.) by RNA sequencing. PMID:34548034
MicroRNAs in Woody Plants. PMID:34531880
Lack of miR-379/miR-544 Cluster Resists High-Fat Diet-Induced Obesity and Prevents Hepatic Triglyceride Accumulation in Mice. PMID:34527673
Genome-wide prediction of cauliflower miRNAs and lncRNAs and their roles in post-transcriptional gene regulation. PMID:34519918
Establishment of Repertoire of Placentome-Associated MicroRNAs and Their Appearance in Blood Plasma Could Identify Early Establishment of Pregnancy in Buffalo (Bubalus bubalis). PMID:34513824
The chromosome-scale genome of Magnolia officinalis provides insight into the evolutionary position of magnoliids. PMID:34505009
Non-Coding RNAs in Normal B-Cell Development and in Mantle Cell Lymphoma: From Molecular Mechanism to Biomarker and Therapeutic Agent Potential. PMID:34502399
Immune-Related Circulating miR-125b-5p and miR-99a-5p Reveal a High Recurrence Risk Group of Pancreatic Cancer Patients after Tumor Resection. PMID:34484811
Feasibility of using probabilistic methods to analyse microRNA quantitative data in forensically relevant body fluids: a proof-of-principle study. PMID:34477924
miRNome profiling in Duchenne muscular dystrophy; identification of asymptomatic and manifesting female carriers. PMID:34472584
Advances in Computational Methodologies for Classification and Sub-Cellular Locality Prediction of Non-Coding RNAs. PMID:34445436
Identification of Novel miRNAs in the F8 Gene Via Bioinformatics Tools. PMID:34435059
MicroRNA Databases and Tools. PMID:34432277
MicroRNA Targeting. PMID:34432276
Large-scale transcriptome-wide profiling of microRNAs in human placenta and maternal plasma at early to mid gestation. PMID:34412547
POSTAR3: an updated platform for exploring post-transcriptional regulation coordinated by RNA-binding proteins. PMID:34403477
miR-344-5p Modulates Cholesterol-Induced β-Cell Apoptosis and Dysfunction Through Regulating Caveolin-1 Expression. PMID:34394002
Circular RNA Circ_0005564 promotes osteogenic differentiation of bone marrow mesenchymal cells in osteoporosis. PMID:34374320
MicroRNA-103a regulates the calcification of vascular smooth muscle cells by targeting runt-related transcription factor 2 in high phosphorus conditions. PMID:34373722
The Role of miRNAs in Extracellular Matrix Repair and Chronic Fibrotic Lung Diseases. PMID:34359876
Recent Advances in the Delivery Carriers and Chemical Conjugation Strategies for Nucleic Acid Drugs. PMID:34359781
Chronic Variable Stress Induces Hepatic Fe(II) Deposition by Up-Regulating ZIP14 Expression via miR-181 Family Pathway in Rats. PMID:34356508
Uncovering Potential lncRNAs and mRNAs in the Progression From Acute Myocardial Infarction to Myocardial Fibrosis to Heart Failure. PMID:34336943
Regulating COX10-AS1 / miR-142-5p / PAICS axis inhibits the proliferation of non-small cell lung cancer. PMID:34323174
Integrated microRNA and mRNA signatures associated with overall survival in epithelial ovarian cancer. PMID:34320033
Altered microRNA expression in COVID-19 patients enables identification of SARS-CoV-2 infection. PMID:34320031
MicroRNA and Hemophilia-A Disease: Bioinformatics Prediction and Experimental Analysis. PMID:34308578
Dissecting the chromosome-level genome of the Asian Clam (Corbicula fluminea). PMID:34294825
LncRNA PVT1 promotes the progression of ovarian cancer by activating TGF-β pathway via miR-148a-3p/AGO1 axis. PMID:34288373
Evaluating the Effect of 3'-UTR Variants in DICER1 and DROSHA on Their Tissue-Specific Expression by miRNA Target Prediction. PMID:34287278
Long Noncoding RNA IFITM4P Regulates Host Antiviral Responses by Acting as a Competing Endogenous RNA. PMID:34287042
In Silico Target Prediction of Overexpressed microRNAs from LPS-Challenged Zebrafish (Danio rerio) Treated with the Novel Anti-Inflammatory Peptide TnP. PMID:34281170
Genome-wide profiling of long noncoding RNAs involved in wheat spike development. PMID:34210256
Secretory microRNA Profiles of Third- and Fourth-Stage Dirofilaria immitis Larvae with Different Macrocyclic Lactone Susceptibility: In Search of Biomarkers for Early Detection of Infection. PMID:34206439
Placental extracellular vesicles-associated microRNA-519c mediates endotoxin adaptation in pregnancy. PMID:34181894
The MicroRNA Family Gets Wider: The IsomiRs Classification and Role. PMID:34178993
Elevated IgE promotes cardiac fibrosis by suppressing miR-486a-5p. PMID:34158869
A Chromosome-Level Genome Assembly of the Spotted Scat (Scatophagus argus). PMID:34146395
Triple-Helical Binding of Peptide Nucleic Acid Inhibits Maturation of Endogenous MicroRNA-197. PMID:34114795
A porcine brain-wide RNA editing landscape. PMID:34112917
Characterization of nucleic acids from extracellular vesicle-enriched human sweat. PMID:34103018
Canonical and Interior Circular RNAs Function as Competing Endogenous RNAs in Psoriatic Skin. PMID:34068434
MiR-17 and miR-93 Promote Tumor Progression by Targeting p21 in Patients with Chordoma. PMID:34054299
DANE-MDA: Predicting microRNA-disease associations via deep attributed network embedding. PMID:34041455
Design and Application of Mini-libraries of miRNA Probes for an Efficient and Versatile miRNA-mRNA Cross-linking. PMID:34000095
Unraveling the role of microRNA/isomiR network in multiple primary melanoma pathogenesis. PMID:33980826
Profiling of Primary and Mature miRNA Expression in Atherosclerosis-Associated Cell Types. PMID:33980036
Application of the targeted sequencing approach reveals the single nucleotide polymorphism (SNP) repertoire in microRNA genes in the pig genome. PMID:33972633
Determination of a microRNA signature of protective kidney ischemic preconditioning originating from proximal tubules. PMID:33972622
Simultaneous learning of individual microRNA-gene interactions and regulatory comodules. PMID:33971820
The associations and roles of microRNA single-nucleotide polymorphisms in cervical cancer. PMID:33967611
Genome-wide analyses of the relict gull (Larus relictus): insights and evolutionary implications. PMID:33926388
An Analysis of Mechanisms for Cellular Uptake of miRNAs to Enhance Drug Delivery and Efficacy in Cancer Chemoresistance. PMID:33923485
Xylo-Oligosaccharides in Prevention of Hepatic Steatosis and Adipose Tissue Inflammation: Associating Taxonomic and Metabolomic Patterns in Fecal Microbiomes with Biclustering. PMID:33921370
Not So Dead Genes-Retrocopies as Regulators of Their Disease-Related Progenitors and Hosts. PMID:33921034
Extracellular Vesicles from Human Adipose-Derived Mesenchymal Stem Cells: A Review of Common Cargos. PMID:33904115
Single nucleotide polymorphisms affect miRNA target prediction in bovine. PMID:33882076
Small RNA sequencing reveals distinct nuclear microRNAs in pig granulosa cells during ovarian follicle growth. PMID:33879202
MicroRNAs and angiogenesis: a new era for the management of colorectal cancer. PMID:33865381
Multi-omic analyses in Abyssinian cats with primary renal amyloid deposits. PMID:33863921
Conserved long-range base pairings are associated with pre-mRNA processing of human genes. PMID:33863890
An integrated epigenomic-transcriptomic landscape of lung cancer reveals novel methylation driver genes of diagnostic and therapeutic relevance. PMID:33859751
Computational prediction of potential siRNA and human miRNA sequences to silence orf1ab associated genes for future therapeutics against SARS-CoV-2. PMID:33846694
The draft genome of the specialist flea beetle Altica viridicyanea (Coleoptera: Chrysomelidae). PMID:33827435
MicroRNA-29 is an essential regulator of brain maturation through regulation of CH methylation. PMID:33826889
Integrative microRNAome analysis of skeletal muscle of Colossoma macropomum (tambaqui), Piaractus mesopotamicus (pacu), and the hybrid tambacu, based on next-generation sequencing data. PMID:33823787
The Interaction of Human and Epstein-Barr Virus miRNAs with Multiple Sclerosis Risk Loci. PMID:33805769
Distinct Age-Specific miRegulome Profiling of Isolated Small and Large Intestinal Epithelial Cells in Mice. PMID:33805523
Genomic Space of MGMT in Human Glioma Revisited: Novel Motifs, Regulatory RNAs, NRF1, 2, and CTCF Involvement in Gene Expression. PMID:33801310
MicroRNAs: Potential Targets for Developing Stress-Tolerant Crops. PMID:33800690
The Causes and Consequences of miR-503 Dysregulation and Its Impact on Cardiovascular Disease and Cancer. PMID:33762949
MicroRNAomes of Cattle Intestinal Tissues Revealed Possible miRNA Regulated Mechanisms Involved in Escherichia coli O157 Fecal Shedding. PMID:33732664
MCPIP-1 Restricts Inflammation via Promoting Apoptosis of Neutrophils. PMID:33717148
Longitudinal profiling of circulating miRNA during cardiac allograft rejection: a proof-of-concept study. PMID:33713567
MicroRNA expression profile in bovine mammary gland parenchyma infected by coagulase-positive or coagulase-negative staphylococci. PMID:33676576
LncRNA LINC00857 strengthens the malignancy behaviors of pancreatic adenocarcinoma cells by serving as a competing endogenous RNA for miR-340-5p to upregulate TGFA expression. PMID:33661995
Melanoma-associated glycosyltransferase GCNT2 as an emerging biomarker and therapeutic target. PMID:33660254
MicroRNA Mimics or Inhibitors as Antiviral Therapeutic Approaches Against COVID-19. PMID:33638807
MiR-378a-3p as a putative biomarker for hepatocellular carcinoma diagnosis and prognosis: Computational screening with experimental validation. PMID:33634974
Size changes in miR‑21 knockout mice: Geometric morphometrics on teeth, alveolar bone and mandible. PMID:33604680
Longitudinal evaluation of whole blood miRNA expression in firefighters. PMID:33603099
LINE retrotransposons characterize mammalian tissue-specific and evolutionarily dynamic regulatory regions. PMID:33602314
Expression and clinical significance of miR-1 and miR-133 in pre-diabetes. PMID:33585035
Techniques for Characterizing Cytomegalovirus-Encoded miRNAs. PMID:33555594
Comparative mRNA and LncRNA Analysis of the Molecular Mechanisms Associated With Low Silk Production in Bombyx mori. PMID:33552120
MicroRNA Profiles in Monocyte-Derived Macrophages Generated by Interleukin-27 and Human Serum: Identification of a Novel HIV-Inhibiting and Autophagy-Inducing MicroRNA. PMID:33525571
IsomiR_Window: a system for analyzing small-RNA-seq data in an integrative and user-friendly manner. PMID:33522913
Genes and SNPs Involved with Scrotal and Umbilical Hernia in Pigs. PMID:33513662
A novel prognostic mRNA/miRNA signature for esophageal cancer and its immune landscape in cancer progression. PMID:33463006
MicroRNA profiling of the pig periaqueductal grey (PAG) region reveals candidates potentially related to sex-dependent differences. PMID:33451362
Comparative Analysis of Transcriptome and sRNAs Expression Patterns in the Brachypodium distachyon- Magnaporthe oryzae Pathosystems. PMID:33440747
Molecular Signature of Extracellular Vesicular Small Non-Coding RNAs Derived from Cerebrospinal Fluid of Leptomeningeal Metastasis Patients: Functional Implication of miR-21 and Other Small RNAs in Cancer Malignancy. PMID:33430103
RNA-Seq Whole Transcriptome Analysis of Bovine Mammary Epithelial Cells in Response to Intracellular Staphylococcus aureus. PMID:33426011
Integration of Transcriptome Resequencing and Quantitative Proteomics Analyses of Collagenase VII-Induced Intracerebral Hemorrhage in Mice. PMID:33424913
Identifying the miRNA Signature Association with Aging-Related Senescence in Glioblastoma. PMID:33419230
Multi-Omics Approach Reveals miR-SNPs Affecting Muscle Fatty Acids Profile in Nelore Cattle. PMID:33419037
Plant miR171 modulates mTOR pathway in HEK293 cells by targeting GNA12. PMID:33386590
Mapping germ-layer specification preventing genes in hPSCs via genome-scale CRISPR screening. PMID:33385119
Chromosomal-Level Genome Assembly of Silver Sillago (Sillago sihama). PMID:33367716
Graph embedding ensemble methods based on the heterogeneous network for lncRNA-miRNA interaction prediction. PMID:33334307
Functional Characterization of the Lin28/let-7 Circuit During Forelimb Regeneration in Ambystoma mexicanum and Its Influence on Metabolic Reprogramming. PMID:33330447
A general fragment-based approach to identify and optimize bioactive ligands targeting RNA. PMID:33318191
CoolMPS: evaluation of antibody labeling based massively parallel non-coding RNA sequencing. PMID:33290507
MiR-378a-3p Is Critical for Burkitt Lymphoma Cell Growth. PMID:33261009
HAHmiR.DB: a server platform for high-altitude human miRNA-gene coregulatory networks and associated regulatory circuits. PMID:33259604
Inhibition of miR-29-3p isoforms via tough decoy suppresses osteoblast function in homeostasis but promotes intermittent parathyroid hormone-induced bone anabolism. PMID:33253931
Regulation of Ptch1 by miR-342-5p and FoxO3 Induced Autophagy Involved in Renal Fibrosis. PMID:33251198
MicroRNAs and Mammarenaviruses: Modulating Cellular Metabolism. PMID:33238430
HumiR: Web Services, Tools and Databases for Exploring Human microRNA Data. PMID:33233537
Human MicroRNA Target Prediction via Multi-Hypotheses Learning. PMID:33232617
Intestinal anti-inflammatory effects of probiotics in DNBS-colitis via modulation of gut microbiota and microRNAs. PMID:33216193
The Role of Extracellular Vesicles (EVs) in the Epigenetic Regulation of Bone Metabolism and Osteoporosis. PMID:33213099
RNA virus-encoded microRNAs: biogenesis, functions and perspectives on application. PMID:33209991
Profiles of MicroRNAs in Interleukin-27-Induced HIV-Resistant T Cells: Identification of a Novel Antiviral MicroRNA. PMID:33196551
Plant miRNAs Reduce Cancer Cell Proliferation by Targeting MALAT1 and NEAT1: A Beneficial Cross-Kingdom Interaction. PMID:33193626
Identification of Novel SARS-CoV-2 Drug Targets by Host MicroRNAs and Transcription Factors Co-regulatory Interaction Network Analysis. PMID:33173539
Circular RNA Expression Profiling Identifies Glaucoma-Related Circular RNAs in Various Chronic Ocular Hypertension Rat Models. PMID:33133146
miR‑7/SP1/TP53BP1 axis may play a pivotal role in NSCLC radiosensitivity. PMID:33125142
The Expression of MicroRNA-21 in Bone Marrow Fluid is an Indicator of Hematological Disorders and Mortality. PMID:33112535
The genome of Chinese flowering cherry (Cerasus serrulata) provides new insights into Cerasus species. PMID:33082971
Global Analyses of Expressed Piwi-Interacting RNAs in Gastric Cancer. PMID:33081152
Importance of microRNAs in Skin Oncogenesis and Their Suitability as Agents and Targets for Topical Therapy. PMID:33080592
Comparative transcriptome study of switchgrass (Panicum virgatum L.) homologous autopolyploid and its parental amphidiploid responding to consistent drought stress. PMID:33072185
Identification of Key Small Non-Coding MicroRNAs Controlling Pacemaker Mechanisms in the Human Sinus Node. PMID:33059532
Genome wide in-silico miRNA and target network prediction from stress responsive Horsegram (Macrotyloma uniflorum) accessions. PMID:33057204
Exercise protects against spinal cord injury through miR-21-mediated suppression of PDCD4. PMID:33042450
Aberration of the modulatory functions of intronic microRNA hsa-miR-933 on its host gene ATF2 results in type II diabetes mellitus and neurodegenerative disease development. PMID:32993798
Comprehensive Analysis of Differentially Expressed circRNAs Reveals a Colorectal Cancer-Related ceRNA Network. PMID:32952599
miRNAs expression signature potentially associated with lymphatic dissemination in locally advanced prostate cancer. PMID:32948204
Long non‑coding RNA NEAT1 modifies cell proliferation, colony formation, apoptosis, migration and invasion via the miR‑4500/BZW1 axis in ovarian cancer. PMID:32945505
Identification of Biomarkers to Construct a Competing Endogenous RNA Network and Establishment of a Genomic-Clinicopathologic Nomogram to Predict Survival for Children with Rhabdoid Tumors of the Kidney. PMID:32908900
Involvement of Noncoding RNAs in the Differentiation of Osteoclasts. PMID:32908541
Genome-wide microRNA expression analysis in human placenta reveals sex-specific patterns: an ENVIRONAGE birth cohort study. PMID:32892695
Non-Coding RNA Databases in Cardiovascular Research. PMID:32887511
Music-listening regulates human microRNA expression. PMID:32867562
Dataset of mutational analysis, miRNAs targeting SARS-CoV-2 genes and host gene expression in SARS-CoV and SARS-CoV-2 infections. PMID:32864402
Integrative analyses of SARS-CoV-2 genomes from different geographical locations reveal unique features potentially consequential to host-virus interaction, pathogenesis and clues for novel therapies. PMID:32844125
Deep Sequencing of Small RNAs in the Whitefly Bemisia tabaci Reveals Novel MicroRNAs Potentially Associated with Begomovirus Acquisition and Transmission. PMID:32842525
Viral Vectors Applied for RNAi-Based Antiviral Therapy. PMID:32842491
Interactome of miRNAs and transcriptome of human umbilical cord endothelial cells exposed to short-term simulated microgravity. PMID:32821776
Whole transcriptome analysis on blue light-induced eye damage. PMID:32821674
Processing of Alu small RNAs by DICER/ADAR1 complexes and their RNAi targets. PMID:32817447
MiR-155-5p and MiR-203a-3p Are Prognostic Factors in Soft Tissue Sarcoma. PMID:32806571
LncRNA Rik-203 Contributes to Sevoflurane Induced Neurotoxicity? PMID:32793611
MicroRNAs and Uveal Melanoma: Understanding the Diverse Role of These Small Molecular Regulators. PMID:32781746
Circulating miR-16-5p, miR-92a-3p, and miR-451a in Plasma from Lung Cancer Patients: Potential Application in Early Detection and a Regulatory Role in Tumorigenesis Pathways. PMID:32726984
Irradiation-Induced Upregulation of miR-711 Inhibits DNA Repair and Promotes Neurodegeneration Pathways. PMID:32718090
The role of miRNA-155 in the immunopathogenesis of obliterative airway disease in mice induced by circulating exosomes from human lung transplant recipients with chronic lung allograft dysfunction. PMID:32707293
Differentially expressed lncRNAs, miRNAs and mRNAs with associated ceRNA networks in a mouse model of myocardial ischemia/reperfusion injury. PMID:32705277
An integrative network-driven pipeline for systematic identification of lncRNA-associated regulatory network motifs in metastatic melanoma. PMID:32703153
Mineralization of pH-Sensitive Doxorubicin Prodrug in ZIF-8 to Enable Targeted Delivery to Solid Tumors. PMID:32664723
MicroRNA-330 Directs Downregulation of the GABABR2 in the Pathogenesis of Pancreatic Cancer Pain. PMID:32621101
Select amino acids in DGCR8 are essential for the UGU-pri-miRNA interaction and processing. PMID:32620823
miRNA Clusters with Down-Regulated Expression in Human Colorectal Cancer and Their Regulation. PMID:32610706
Ross River Virus Provokes Differentially Expressed MicroRNA and RNA Interference Responses in Aedes aegypti Mosquitoes. PMID:32605094
MiR-10b inhibits migration and invasion of pancreatic ductal adenocarcinoma via regulating E2F7. PMID:32592206
Transcriptomic microRNA Profiling of Dendritic Cells in Response to Gut Microbiota-Secreted Vesicles. PMID:32585977
Identification of Known and Novel MicroRNAs in Raspberry Organs Through High-Throughput Sequencing. PMID:32582255
microRNAs targeting cellular cholesterol: implications for combating anticancer drug resistance. PMID:32577155
Profiling cytotoxic microRNAs in pediatric and adult glioblastoma cells by high-content screening, identification, and validation of miR-1300. PMID:32555332
A lncRNA-miRNA-mRNA network for human primed, naive and extended pluripotent stem cells. PMID:32544168
Expression of microRNAs in human platelet-poor plasma: analysis of the factors affecting their expression and association with proximal genetic variants. PMID:32543954
Deep belief network-Based Matrix Factorization Model for MicroRNA-Disease Associations Prediction. PMID:32523330
Downregulated Platelet miR-1233-5p in Patients with Alzheimer's Pathologic Change with Mild Cognitive Impairment is Associated with Aβ-Induced Platelet Activation via P-Selectin. PMID:32485903
Identification of Molecular Mechanisms Related to Pig Fatness at the Transcriptome and miRNAome Levels. PMID:32485856
The Role of MicroRNA in the Airway Surface Liquid Homeostasis. PMID:32481719
Detection and Prognosis of Prostate Cancer Using Blood-Based Biomarkers. PMID:32454797
MyomirDB: A unified database and server platform for muscle atrophy myomiRs, coregulatory networks and regulons. PMID:32451429
Down-regulated miR-495 can target programmed cell death 10 in ankylosing spondylitis. PMID:32450789
miRactDB characterizes miRNA-gene relation switch between normal and cancer tissues across pan-cancer. PMID:32436932
Clues of in vivo nuclear gene regulation by mitochondrial short non-coding RNAs. PMID:32427953
sMETASeq: Combined Profiling of Microbiota and Host Small RNAs. PMID:32422595
Dynamic Expansion and Functional Evolutionary Profiles of Plant Conservative Gene Family SBP-Box in Twenty Two Flowering Plants and the Origin of miR156. PMID:32414086
Adrenomedullin regulated by miRNA-574-3p protects premature infants with bronchopulmonary dysplasia. PMID:32412065
Integrated small RNA and mRNA expression profiles reveal miRNAs and their target genes in response to Aspergillus flavus growth in peanut seeds. PMID:32404101
MicroRNA regulatory pattern in spinal cord ischemia-reperfusion injury. PMID:32394971
Guidelines for the Optimization and Validation of In Situ Hybridization. PMID:32394372
A High-Quality Genome Sequence of Model Legume Lotus japonicus (MG-20) Provides Insights into the Evolution of Root Nodule Symbiosis. PMID:32365501
The Role of miRNA for the Treatment of MGMT Unmethylated Glioblastoma Multiforme. PMID:32354046
miR-30a-5p Inhibits Proliferation and Migration of Lung Squamous Cell Carcinoma Cells by Targeting FOXD1. PMID:32351986
miR-322 treatment rescues cell apoptosis and neural tube defect formation through silencing NADPH oxidase 4. PMID:32329577
microRNAs in the Antitumor Immune Response and in Bone Metastasis of Breast Cancer: From Biological Mechanisms to Therapeutics. PMID:32316552
miR-125a-5p post-transcriptionally suppresses GALNT7 to inhibit proliferation and invasion in cervical cancer cells via the EGFR/PI3K/AKT pathway. PMID:32308562
Deletion of Herpes Simplex Virus 1 MicroRNAs miR-H1 and miR-H6 Impairs Reactivation. PMID:32295910
The Clinical Potential of Circulating miRNAs as Biomarkers: Present and Future Applications for Diagnosis and Prognosis of Age-Associated Bone Diseases. PMID:32290369
EPIGENE: genome-wide transcription unit annotation using a multivariate probabilistic model of histone modifications. PMID:32264931
The chromosome-scale assembly of the willow genome provides insight into Salicaceae genome evolution. PMID:32257231
The Promising Role of miR-21 as a Cancer Biomarker and Its Importance in RNA-Based Therapeutics. PMID:32244168
Genome-Wide Analysis of MicroRNA-related Single Nucleotide Polymorphisms (SNPs) in Mouse Genome. PMID:32238847
The Encystment-Related MicroRNAs and Its Regulation Molecular Mechanism in Pseudourostyla cristata Revealed by High Throughput Small RNA Sequencing. PMID:32225121
Gastric Cancer MicroRNAs Meta-signature. PMID:32215261
Role of siRNAs and miRNAs in the processes of RNA-mediated gene silencing during viral infections. PMID:32214541
Methylome-based cell-of-origin modeling (Methyl-COOM) identifies aberrant expression of immune regulatory molecules in CLL. PMID:32188505
Noncoding microRNAs: small RNAs play a big role in regulation of ADME? PMID:32154096
miRNA125b Downregulation: A Review of the Novel Paradigm of Psoriasis Epigenetic Regulation. PMID:32140356
Genome-wide analysis of MicroRNA-messenger RNA interactome in ex-vivo gill filaments, Anguilla japonica. PMID:32131732
LeukmiR: a database for miRNAs and their targets in acute lymphoblastic leukemia. PMID:32128558
Long noncoding RNA LINC00657 enhances the malignancy of pancreatic ductal adenocarcinoma by acting as a competing endogenous RNA on microRNA-433 to increase PAK4 expression. PMID:32116086
Long Non-Coding RNA Cancer Susceptibility 9 (CASC9) Up-Regulates the Expression of ERBB2 by Inhibiting miR-193a-5p in Colorectal Cancer. PMID:32110102
The conserved microRNA miR-34 regulates synaptogenesis via coordination of distinct mechanisms in presynaptic and postsynaptic cells. PMID:32107390
A Novel Three-miRNA Signature Identified Using Bioinformatics Predicts Survival in Esophageal Carcinoma. PMID:32104700
vtRNA2-1/nc886 Produces a Small RNA That Contributes to Its Tumor Suppression Action through the microRNA Pathway in Prostate Cancer. PMID:32093270
Comparison of Proangiogenic Effects of Adipose-Derived Stem Cells and Foreskin Fibroblast Exosomes on Artificial Dermis Prefabricated Flaps. PMID:32089706
The MicroRNA-based Liquid Biopsy Improves Early Assessment of Lethal Acetaminophen Poisoning: A Case Report. PMID:32086430
Radiogenomics predicts the expression of microRNA-1246 in the serum of esophageal cancer patients. PMID:32054931
Common and Unique microRNAs in Multiple Carcinomas Regulate Similar Network of Pathways to Mediate Cancer Progression. PMID:32047181
Transcriptome analysis reveals the roles of stem nodes in cadmium transport to rice grain. PMID:32028884
A conserved sequence signature is essential for robust plant miRNA biogenesis. PMID:32025695
RATEmiRs: the rat atlas of tissue-specific and enriched miRNAs for discerning baseline expression exclusivity of candidate biomarkers. PMID:32009518
BioSeqZip: a collapser of NGS redundant reads for the optimization of sequence analysis. PMID:31999333
Closing the circle: current state and perspectives of circular RNA databases. PMID:31998941
A computational approach to the study of interactions between proteins and miR10-b, miR-335, and miR-21 involved in breast cancer. PMID:31992954
MicroRNAs in Psychological Stress Reactions and Their Use as Stress-Associated Biomarkers, Especially in Human Saliva. PMID:31988918
A novel computational approach to the silencing of Sugarcane Bacilliform Guadeloupe A Virus determines potential host-derived MicroRNAs in sugarcane (Saccharum officinarum L.). PMID:31976180
Small RNA Bidirectional Crosstalk During the Interaction Between Wheat and Zymoseptoria tritici. PMID:31969895
Intragenic MicroRNAs Autoregulate Their Host Genes in Both Direct and Indirect Ways-A Cross-Species Analysis. PMID:31963421
The Role of MicroRNAs in Mammalian Fertility: From Gametogenesis to Embryo Implantation. PMID:31963271
The internal loops in the lower stem of primary microRNA transcripts facilitate single cleavage of human Microprocessor. PMID:31956890
miRNAs as Influencers of Cell-Cell Communication in Tumor Microenvironment. PMID:31952362
Small RNA and mRNA Sequencing Reveal the Roles of microRNAs Involved in Pomegranate Female Sterility. PMID:31952315
Genome-wide analysis of circular RNAs involved in Marek's disease tumourigenesis in chickens. PMID:31948317
Systematic analysis of lncRNA and microRNA dynamic features reveals diagnostic and prognostic biomarkers of myocardial infarction. PMID:31927529
Extracellular vesicles of U937 macrophage cell line infected with DENV-2 induce activation in endothelial cells EA.hy926. PMID:31910224
A network view of microRNA and gene interactions in different pathological stages of colon cancer. PMID:31888617
The persimmon (Diospyros oleifera Cheng) genome provides new insights into the inheritance of astringency and ancestral evolution. PMID:31871686
Folic acid supplementation reduces multigenerational sperm miRNA perturbation induced by in utero environmental contaminant exposure. PMID:31853372
RHPCG: a database of the Regulation of the Hippo Pathway in Cancer Genome. PMID:31848596
MiR-6803-5p Promotes Cancer Cell Proliferation and Invasion via PTPRO/NF-κB Axis in Colorectal Cancer. PMID:31827380
Identification and characterization of microRNAs in phloem and xylem from ramie (Boehmeria nivea). PMID:31820312
Transcriptome-wide miRNA identification of Bacopa monnieri: a cross-kingdom approach. PMID:31797719
Perspectives on miRNAs as Epigenetic Markers in Osteoporosis and Bone Fracture Risk: A Step Forward in Personalized Diagnosis. PMID:31737038
Role of MicroRNAs in Parkinson's Disease. PMID:31718095
Identification of MicroRNAs That Respond to Soybean Cyst Nematode Infection in Early Stages in Resistant and Susceptible Soybean Cultivars. PMID:31718001
MiR-802 alleviates lipopolysaccharide-induced acute lung injury by targeting Peli2. PMID:31696241
Transcriptomic Analysis of mRNA-lncRNA-miRNA Interactions in Hepatocellular Carcinoma. PMID:31695090
Dysregulated MicroRNA Fingerprints and Methylation Patterns in Hepatocellular Carcinoma, Cancer Stem Cells, and Mesenchymal Stem Cells. PMID:31681762
CL-PMI: A Precursor MicroRNA Identification Method Based on Convolutional and Long Short-Term Memory Networks. PMID:31681416
Two-day-treatment of Activin-A leads to transient change in SV-HFO osteoblast gene expression and reduction in matrix mineralization. PMID:31667867
Small RNA and degradome deep sequencing reveal respective roles of cold-related microRNAs across Chinese wild grapevine and cultivated grapevine. PMID:31615400
Circulating miRNAs as Diagnostic and Prognostic Biomarkers in Common Solid Tumors: Focus on Lung, Breast, Prostate Cancers, and Osteosarcoma. PMID:31614612
The Importance of microRNAs in RAS Oncogenic Activation in Human Cancer. PMID:31612113
Long non-coding RNA transcribed from pseudogene PPIAP43 is associated with radiation sensitivity of small cell lung cancer cells. PMID:31611966
RumimiR: a detailed microRNA database focused on ruminant species. PMID:31608376
miR2Diabetes: A Literature-Curated Database of microRNA Expression Patterns, in Diabetic Microvascular Complications. PMID:31601051
MirGeneDB 2.0: the metazoan microRNA complement. PMID:31598695
MicroRNAs and Epigenetics Strategies to Reverse Breast Cancer. PMID:31597272
Identification and characterization of circRNAs as competing endogenous RNAs for miRNA-mRNA in colorectal cancer. PMID:31579577
lncRNA TMEM51-AS1 and RUSC1-AS1 function as ceRNAs for induction of laryngeal squamous cell carcinoma and prediction of prognosis. PMID:31565549
MiR-20b Down-Regulates Intestinal Ferroportin Expression In Vitro and In Vivo. PMID:31554201
The First Highly Contiguous Genome Assembly of Pikeperch (Sander lucioperca), an Emerging Aquaculture Species in Europe. PMID:31540274
A chromosome-level genome assembly of Cydia pomonella provides insights into chemical ecology and insecticide resistance. PMID:31530873
ABCD: Alzheimer's disease Biomarkers Comprehensive Database. PMID:31501752
A Complete Pipeline for Isolating and Sequencing MicroRNAs, and Analyzing Them Using Open Source Tools. PMID:31498311
Long Non-coding RNA in CNS Injuries: A New Target for Therapeutic Intervention. PMID:31437654
LINC00511 promotes the malignant phenotype of clear cell renal cell carcinoma by sponging microRNA-625 and thereby increasing cyclin D1 expression. PMID:31434797
Differentially Expressed MiRNAs and tRNA Genes Affect Host Homeostasis During Highly Pathogenic Porcine Reproductive and Respiratory Syndrome Virus Infections in Young Pigs. PMID:31428130
MicroRNA-432 is downregulated in cervical cancer and directly targets FN1 to inhibit cell proliferation and invasion. PMID:31423213
Cancer-associated mutations in DICER1 RNase IIIa and IIIb domains exert similar effects on miRNA biogenesis. PMID:31417090
Strand-specific miR-28-3p and miR-28-5p have differential effects on nasopharyngeal cancer cells proliferation, apoptosis, migration and invasion. PMID:31360121
Before and After: Comparison of Legacy and Harmonized TCGA Genomic Data Commons' Data. PMID:31344359
Involvement of miR-4262 in paclitaxel resistance through the regulation of PTEN in non-small cell lung cancer. PMID:31337279
Identification and Functional Verification of MicroRNA-16 Family Targeting Intestinal Divalent Metal Transporter 1 (DMT1) in vitro and in vivo. PMID:31316397
Non-Coding RNAs and their Integrated Networks. PMID:31301674
Chromosomal-level assembly of the blood clam, Scapharca (Anadara) broughtonii, using long sequence reads and Hi-C. PMID:31289832
Distinct Profiles of Cell-Free MicroRNAs in Plasma of Veterans with Post-Traumatic Stress Disorder. PMID:31277223
MicroRNA profiles in B-cell non-Hodgkin lymphoma. PMID:31263393
miR-23b and miR-27b are oncogenic microRNAs in breast cancer: evidence from a CRISPR/Cas9 deletion study. PMID:31253120
miRBaseMiner, a tool for investigating miRBase content. PMID:31251108
Pseudomolecule-level assembly of the Chinese oil tree yellowhorn (Xanthoceras sorbifolium) genome. PMID:31241154
Next generation community assessment of biomedical entity recognition web servers: metrics, performance, interoperability aspects of BeCalm. PMID:31236786
MicroRNA (miRNA)-to-miRNA Regulation of Programmed Cell Death 4 (PDCD4). PMID:31235478
Comprehensive assessment of multiple biases in small RNA sequencing reveals significant differences in the performance of widely used methods. PMID:31226924
microRNA and Other Small RNA Sequence Profiling across Six Tissues of Chinese Forest Musk Deer (Moschus berezovskii). PMID:31214615
Multi omics analysis of fibrotic kidneys in two mouse models. PMID:31201317
Why the Gold Standard Approach by Mammography Demands Extension by Multiomics? Application of Liquid Biopsy miRNA Profiles to Breast Cancer Disease Management. PMID:31200461
The full recovery of mice (Mus Musculus C57BL/6 strain) from virus-induced sarcoma after treatment with a complex of DDMC delivery system and sncRNAs. PMID:31193489
A comparison of RNA extraction and sequencing protocols for detection of small RNAs in plasma. PMID:31159762
Interpreting the MicroRNA-15/107 family: interaction identification by combining network based and experiment supported approach. PMID:31151434
Induced androgenetic development in rainbow trout and transcriptome analysis of irradiated eggs. PMID:31147623
Dual Epigenetic Regulation of ERα36 Expression in Breast Cancer Cells. PMID:31146345
Analysis of miRNAs Targeted Storage Regulatory Genes during Soybean Seed Development Based on Transcriptome Sequencing. PMID:31142023
Ionizing Radiation-inducible microRNA-21 Induces Angiogenesis by Directly Targeting PTEN. PMID:31128066
Clinical and biological impact of miR-18a expression in breast cancer after neoadjuvant chemotherapy. PMID:31115881
microRNA-944 inhibits the malignancy of hepatocellular carcinoma by directly targeting IGF-1R and deactivating the PI3K/Akt signaling pathway. PMID:31114322
The Effects of Regular Exercise on Circulating Cardiovascular-related MicroRNAs. PMID:31101833
ALG-1 Influences Accurate mRNA Splicing Patterns in the Caenorhabditis elegans Intestine and Body Muscle Tissues by Modulating Splicing Factor Activities. PMID:31073019
MicroRNAs as possible indicators of drug sensitivity in breast cancer cell lines. PMID:31063487
miRNA Profiles in Extracellular Vesicles From Serum Early in Pregnancies Complicated by Gestational Diabetes Mellitus. PMID:31058973
MicroRNAs as Molecular Switches in Macrophage Activation. PMID:31057539
Bovine Embryo-Secreted microRNA-30c Is a Potential Non-invasive Biomarker for Hampered Preimplantation Developmental Competence. PMID:31024625
HumCFS: a database of fragile sites in human chromosomes. PMID:30999860
Genome-Wide Identification of Long Non-coding RNAs Responsive to Lasiodiplodia theobromae Infection in Grapevine. PMID:30992656
Exosomal miRNAs as Novel Pharmacodynamic Biomarkers for Cancer Chemopreventive Agent Early Stage Treatments in Chemically Induced Mouse Model of Lung Squamous Cell Carcinoma. PMID:30987362
Comparative analysis of the root and leaf transcriptomes in Chelidonium majus L. PMID:30986259
MicroRNA-145 Regulates Pathological Retinal Angiogenesis by Suppression of TMOD3. PMID:30981984
MicroRNA and their target mRNAs change expression in whole blood of patients after intracerebral hemorrhage. PMID:30966854
Investigation of somatic single nucleotide variations in human endogenous retrovirus elements and their potential association with cancer. PMID:30934003
miR-21-mediated regulation of 15-hydroxyprostaglandin dehydrogenase in colon cancer. PMID:30931980
miR-31-5p Is a LIPUS-Mechanosensitive MicroRNA that Targets HIF-1α Signaling and Cytoskeletal Proteins. PMID:30925808
Genome-wide identification and characterization of long noncoding and circular RNAs in germline stem cells. PMID:30918261
Limited differential expression of miRNAs and other small RNAs in LPS-stimulated human monocytes. PMID:30908559
MicroRNA Shuttle from Cell-To-Cell by Exosomes and Its Impact in Cancer. PMID:30901915
Reprogramming of CaCo2 colorectal cancer cells after using the complex of poly-(N-vinylpyrrolidone) with small non-coding RNAs. PMID:30899675
mirtronDB: a mirtron knowledge base. PMID:30874795
Tumour biomarkers-Tracing the molecular function and clinical implication. PMID:30873683
MicroRNAs in brain development and cerebrovascular pathophysiology. PMID:30840494
Comparative genomics reveals origin of MIR159A-MIR159B paralogy, and complexities of PTGS interaction between miR159 and target GA-MYBs in Brassicaceae. PMID:30840147
Gonadal microRNA Expression Profiles and Their Potential Role in Sex Differentiation and Gonadal Maturation of Mud Crab Scylla paramamosain. PMID:30835008
Prenatal circulating microRNA signatures of foetal Down syndrome. PMID:30787377
Alterations in tissue microRNA after heat stress in the conscious rat: potential biomarkers of organ-specific injury. PMID:30770735
Small RNAs in Rat Sperm Are a Predictive and Sensitive Biomarker of Exposure to the Testicular Toxicant Ethylene Glycol Monomethyl Ether. PMID:30768127
Urinary microRNA in kidney disease: utility and roles. PMID:30759023
microRNA-758 inhibits the malignant phenotype of osteosarcoma cells by directly targeting HMGA1 and deactivating the Wnt/β-catenin pathway. PMID:30755810
Effect of plasma MicroRNA on antihypertensive response to beta blockers in the Pharmacogenomic Evaluation of Antihypertensive Responses (PEAR) studies. PMID:30753892
Diagnostic Value of Circulating microRNAs for In-Stent Restenosis in Patients with Lower Extremity Arterial Occlusive Disease. PMID:30718561
Integrating random walk and binary regression to identify novel miRNA-disease association. PMID:30691413
Loss of miR-210 leads to progressive retinal degeneration in Drosophila melanogaster. PMID:30670478
Reference MicroRNAs for RT-qPCR Assays in Cervical Cancer Patients and Their Application to Studies of HPV16 and Hypoxia Biomarkers. PMID:30660934
MiR-6872 host gene SEMA3B and its antisense lncRNA SEMA3B-AS1 function synergistically to suppress gastric cardia adenocarcinoma progression. PMID:30656427
Expanding the miRNA Repertoire in Atlantic Salmon; Discovery of IsomiRs and miRNAs Highly Expressed in Different Tissues and Developmental Stages. PMID:30641951
Bioinformatic analysis of long-lasting transcriptional and translational changes in the basolateral amygdala following acute stress. PMID:30629705
Interpreting Non-coding Genetic Variation in Multiple Sclerosis Genome-Wide Associated Regions. PMID:30619471
A miRNA Host Response Signature Accurately Discriminates Acute Respiratory Infection Etiologies. PMID:30619110
The Use of Targeted Next Generation Sequencing to Explore Candidate Regulators of TGF-β1's Impact on Kidney Cells. PMID:30618784
MicroRNAs: Recent insights towards their role in male infertility and reproductive cancers. PMID:30599090
miRBaseConverter: an R/Bioconductor package for converting and retrieving miRNA name, accession, sequence and family information in different versions of miRBase. PMID:30598108
FMSM: a novel computational model for predicting potential miRNA biomarkers for various human diseases. PMID:30598090
NovelmiRNA-25 inhibits AMPD2 in peripheral blood mononuclear cells of patients with systemic lupus erythematosus and represents a promising novel biomarker. PMID:30577810
microRNA-744 is downregulated in glioblastoma and inhibits the aggressive behaviors by directly targeting NOB1. PMID:30555741
Ribonuclease MCPiP1 contributes to the loss of micro-RNA-200 family members in pancreatic cancer cells. PMID:30542509
Differences in miRNA differential expression in whole blood between horses with sarcoid regression and progression. PMID:30506726
High-throughput sequencing of hair follicle development-related micrornas in cashmere goat at various fetal periods. PMID:30505201
MicroRNA cluster miR199a/214 are differentially expressed in female and male rats following nicotine self-administration. PMID:30504847
Improving the Gene Ontology Resource to Facilitate More Informative Analysis and Interpretation of Alzheimer's Disease Data. PMID:30501127
Identifying cancer-related microRNAs based on subpathways. PMID:30472691
The presence of extracellular microRNAs in the media of cultured Drosophila cells. PMID:30470777
miR-21 promotes EGF-induced pancreatic cancer cell proliferation by targeting Spry2. PMID:30464258
An Enrichment Analysis for Cardiometabolic Traits Suggests Non-Random Assignment of Genes to microRNAs. PMID:30463316
RATEmiRs: the rat atlas of tissue-specific and enriched miRNAs database. PMID:30453895
miRBase: from microRNA sequences to function. PMID:30423142
Small non-coding RNA expression in mouse nephrogenic mesenchymal progenitors. PMID:30422124
LncRNAs in polyploid cotton interspecific hybrids are derived from transposon neofunctionalization. PMID:30419941
Genome-wide identification and characterization of long non-coding RNAs involved in the early somatic embryogenesis in Dimocarpus longan Lour. PMID:30400813
Age- and sex-dependent changes in levels of circulating brain-enriched microRNAs during normal aging. PMID:30383539
Aging and aging-associated diseases: a microRNA-based endocrine regulation hypothesis. PMID:30375982
New insights into tomato microRNAs. PMID:30375421
Identification and characterization of skin color microRNAs in Koi carp (Cyprinus carpio L.) by Illumina sequencing. PMID:30373521
In silico identification of conserved miRNAs and their selective target gene prediction in indicine (Bos indicus) cattle. PMID:30365525
Editome Disease Knowledgebase (EDK): a curated knowledgebase of editome-disease associations in human. PMID:30357418
MicroRNAs as Biomarkers of B-cell Lymphoma. PMID:30349178
Systematic identification and analysis of dysregulated miRNA and transcription factor feed-forward loops in hypertrophic cardiomyopathy. PMID:30338905
Up-regulation of the kinase gene SGK1 by progesterone activates the AP-1-NDRG1 axis in both PR-positive and -negative breast cancer cells. PMID:30337371
Uncovering association networks through an eQTL analysis involving human miRNAs and lincRNAs. PMID:30301969
Role of flow-sensitive microRNAs and long noncoding RNAs in vascular dysfunction and atherosclerosis. PMID:30300747
Intracytoplasmic Re-localization of miRISC Complexes. PMID:30298086
Copaifera langsdorffii Novel Putative Long Non-Coding RNAs: Interspecies Conservation Analysis in Adaptive Response to Different Biomes. PMID:30297664
MicroRNA-301b promotes cell proliferation and apoptosis resistance in triple-negative breast cancer by targeting CYLD. PMID:30269739
Identification and comparison of microRNAs in pituitary gland during prenatal and postnatal stages of sheep by deep sequencing. PMID:30262709
Transcriptional Regulatory Networks in Hepatitis C Virus-induced Hepatocellular Carcinoma. PMID:30250040
MIR4532 gene variant rs60432575 influences the expression of KCNJ11 and the sulfonylureas-stimulated insulin secretion. PMID:30242599
Shifts in ovine cardiopulmonary microRNA expression in late gestation and the perinatal period. PMID:30231073
Long Non-Coding RNAs as Endogenous Target Mimics and Exploration of Their Role in Low Nutrient Stress Tolerance in Plants. PMID:30223541
Dual-layer transposon repression in heads of Drosophila melanogaster. PMID:30217866
Genome-Wide Investigation of the Role of MicroRNAs in Desiccation Tolerance in the Resurrection Grass Tripogon loliiformis. PMID:30200279
Predicting microRNA-disease associations using bipartite local models and hubness-aware regression. PMID:30196756
African swine fever virus does not express viral microRNAs in experimentally infected pigs. PMID:30176871
Crosstalk between MicroRNAs and Autophagy in Adult Neurogenesis: Implications for Neurodegenerative Disorders. PMID:30151343
ESCC ATLAS: A population wide compendium of biomarkers for Esophageal Squamous Cell Carcinoma. PMID:30143675
Identifying and Exploiting Potential miRNA-Disease Associations With Neighborhood Regularized Logistic Matrix Factorization. PMID:30131824
MiR-96 enhances cellular proliferation and tumorigenicity of human cervical carcinoma cells through PTPN9. PMID:30108433
Liquid biopsy and PCR-free ultrasensitive detection systems in oncology (Review). PMID:30085333
Non-coding RNAs: the riddle of the transcriptome and their perspectives in cancer. PMID:30069443
3' RNA Uridylation in Epitranscriptomics, Gene Regulation, and Disease. PMID:30057901
Small Non-coding RNA Expression and Vertebrate Anoxia Tolerance. PMID:30042786
Genome-wide identification, expression profiling, and target gene analysis of microRNAs in the Onion thrips, Thrips tabaci Lindeman (Thysanoptera: Thripidae), vectors of tospoviruses (Bunyaviridae). PMID:30038744
MicroRNA-539 inhibits colorectal cancer progression by directly targeting SOX4. PMID:30013665
PAREsnip2: a tool for high-throughput prediction of small RNA targets from degradome sequencing data using configurable targeting rules. PMID:30007348
Identification of miRNAs and their targets in regulating tuberous root development in radish using small RNA and degradome analyses. PMID:30003000
A comprehensive review of web-based resources of non-coding RNAs for plant science research. PMID:29989090
Clinical evaluation of 4 types of microRNA in serum as biomarkers of esophageal squamous cell carcinoma. PMID:29963194
MicroRNA-Related Polymorphisms in Infectious Diseases-Tiny Changes With a Huge Impact on Viral Infections and Potential Clinical Applications. PMID:29963045
Detection and Verification of Mammalian Mirtrons by Northern Blotting. PMID:29959684
Kynurenine 3-Monooxygenase Gene Associated With Nicotine Initiation and Addiction: Analysis of Novel Regulatory Features at 5' and 3'-Regions. PMID:29951083
Induction of innate immune memory via microRNA targeting of chromatin remodelling factors. PMID:29950719
MicroRNAs in prostate cancer: From function to biomarker discovery. PMID:29932371
Systematic analyses reveal long non-coding RNA (PTAF)-mediated promotion of EMT and invasion-metastasis in serous ovarian cancer. PMID:29929545
Presymptomatic change in microRNAs modulates Tau pathology. PMID:29915328
MicroRNA-644a promotes apoptosis of hepatocellular carcinoma cells by downregulating the expression of heat shock factor 1. PMID:29898735
ARMOUR - A Rice miRNA: mRNA Interaction Resource. PMID:29868062
The Glucose-Regulated MiR-483-3p Influences Key Signaling Pathways in Cancer. PMID:29867024
DEXTER: Disease-Expression Relation Extraction from Text. PMID:29860481
MicroRNA-17 and the prognosis of human carcinomas: a systematic review and meta-analysis. PMID:29858404
ADAR1-mediated regulation of melanoma invasion. PMID:29855470
Motif scraper: a cross-platform, open-source tool for identifying degenerate nucleotide motif matches in FASTA files. PMID:29850891
Comprehensive identification of microRNA arm selection preference in lung cancer: miR-324-5p and -3p serve oncogenic functions in lung cancer. PMID:29844840
Microarray analysis of miRNA expression profiles following whole body irradiation in a mouse model. PMID:29799276
MicroRNA-711-Induced Downregulation of Angiopoietin-1 Mediates Neuronal Cell Death. PMID:29774773
miR-MaGiC improves quantification accuracy for small RNA-seq. PMID:29764489
Ouroboros resembling competitive endogenous loop (ORCEL) in circular RNAs revealed through transcriptome sequencing dataset analysis. PMID:29764361
An integrated view of the role of miR-130b/301b miRNA cluster in prostate cancer. PMID:29744254
Alternative miRNAs? Human sequences misidentified as plant miRNAs in plant studies and in human plasma. PMID:29744036
miR-488 inhibits cell growth and metastasis in renal cell carcinoma by targeting HMGN5. PMID:29713189
Identification of novel circulatory microRNA signatures linked to patients with ischemic stroke. PMID:29701837
MicroRNAs in hereditary and sporadic premature aging syndromes and other laminopathies. PMID:29696758
miRwayDB: a database for experimentally validated microRNA-pathway associations in pathophysiological conditions. PMID:29688364
Characterization and potential role of microRNA in the Chinese dominant malaria mosquito Anopheles sinensis (Diptera: Culicidae) throughout four different life stages. PMID:29682276
Identification of aberrant circulating miRNAs in Parkinson's disease plasma samples. PMID:29670823
Examining the Genetic Background of Porcine Muscle Growth and Development Based on Transcriptome and miRNAome Data. PMID:29659518
miRNAtools: Advanced Training Using the miRNA Web of Knowledge. PMID:29657302
Roles of Non-Coding RNA in Sugarcane-Microbe Interaction. PMID:29657296
MicroRNA MultiTool: A Software for Identifying Modified and Unmodified Human microRNA Using Mass Spectrometry. PMID:29657285
High Percentage of Isomeric Human MicroRNA and Their Analytical Challenges. PMID:29657271
Lateral Root Development in Potato Is Mediated by Stu-mi164 Regulation of NAC Transcription Factor. PMID:29651294
Deep learning meets ontologies: experiments to anchor the cardiovascular disease ontology in the biomedical literature. PMID:29650041
MicroRNA-223 inhibits deposition of the extracellular matrix by airway smooth muscle cells through targeting IGF-1R in the PI3K/Akt pathway. PMID:29636864
MicroRNA profiling during directed differentiation of cortical interneurons from human-induced pluripotent stem cells. PMID:29632804
ELLPMDA: Ensemble learning and link prediction for miRNA-disease association prediction. PMID:29619882
Profiles of miRNA Isoforms and tRNA Fragments in Prostate Cancer. PMID:29593348
Anti-miRNA oligonucleotides: A comprehensive guide for design. PMID:29570036
The mRNA and miRNA transcriptomic landscape of Panax ginseng under the high ambient temperature. PMID:29560829
The Oncogenic Relevance of miR-17-92 Cluster and Its Paralogous miR-106b-25 and miR-106a-363 Clusters in Brain Tumors. PMID:29547527
Identification and characterization of microRNAs in tree peony during chilling induced dormancy release by high-throughput sequencing. PMID:29540706
Transmission of microRNA antimiRs to mouse offspring via the maternal-placental-fetal unit. PMID:29540511
Downregulation of TLR4 by miR-181a Provides Negative Feedback Regulation to Lipopolysaccharide-Induced Inflammation. PMID:29535629
Analysis of microRNA profile of Anopheles sinensis by deep sequencing and bioinformatic approaches. PMID:29530087
Altered global microRNA expression in hepatic stellate cells LX-2 by angiotensin-(1-7) and miRNA-1914-5p identification as regulator of pro-fibrogenic elements and lipid metabolism. PMID:29524604
GRMDA: Graph Regression for MiRNA-Disease Association Prediction. PMID:29515453
Are microRNAs Important Players in HIV-1 Infection? An Update. PMID:29510515
Mapping the microRNA Expression Profiles in Glyoxalase Over-expressing Salinity Tolerant Rice. PMID:29491730
Expression and function of microRNA-9 in the mid-hindbrain area of embryonic chick. PMID:29471810
The miRNA Mirage: How Close Are We to Finding a Non-Invasive Diagnostic Biomarker in Endometriosis? A Systematic Review. PMID:29463003
Parental Expression Variation of Small RNAs Is Negatively Correlated with Grain Yield Heterosis in a Maize Breeding Population. PMID:29441076
Re-Arrangements in the Cytoplasmic Distribution of Small RNAs Following the Maternal-to-Zygotic Transition in Drosophila Embryos. PMID:29439397
microRNA expression profiles of scar and normal tissue from patients with posterior urethral stricture caused by pelvic fracture urethral distraction defects. PMID:29436608
Inhibition of miRNA-21 attenuates the proliferation and metastasis of human osteosarcoma by upregulating PTEN. PMID:29434694
Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle. PMID:29415651
Mirna biogenesis pathway is differentially regulated during adipose derived stromal/stem cell differentiation. PMID:29411671
Clinical-pathological study on β-APP, IL-1β, GFAP, NFL, Spectrin II, 8OHdG, TUNEL, miR-21, miR-16, miR-92 expressions to verify DAI-diagnosis, grade and prognosis. PMID:29402984
Comprehensive network of miRNA-induced intergenic interactions and a biological role of its core in cancer. PMID:29402894
MicroRNA-509-3p inhibits cell proliferation and invasion via downregulation of X-linked inhibitor of apoptosis in glioma. PMID:29399183
Overexpression of ghr-miR166b generates resistance against Bemisia tabaci infestation in Gossypium hirsutum plants. PMID:29397416
Intermittent cyclic mechanical tension altered the microRNA expression profile of human cartilage endplate chondrocytes. PMID:29393457
circRNA_0046366 inhibits hepatocellular steatosis by normalization of PPAR signaling. PMID:29391755
Oncogenic and Tumor-Suppressive Roles of MicroRNAs with Special Reference to Apoptosis: Molecular Mechanisms and Therapeutic Potential. PMID:29388067
MicroRNA-23a/24-2/27a as a potential diagnostic biomarker for cancer: A systematic review and meta-analysis. PMID:29387410
Alternative Splicing of Alpha- and Beta-Synuclein Genes Plays Differential Roles in Synucleinopathies. PMID:29370097
Expression profiling of snoRNAs in normal hematopoiesis and AML. PMID:29365324
miR-9a mediates the role of Lethal giant larvae as an epithelial growth inhibitor in Drosophila. PMID:29361610
Syndecan-1 Controls Lung Tumorigenesis by Regulating miRNAs Packaged in Exosomes. PMID:29355516
Opportunities of next-generation sequencing in non-muscle invasive bladder cancer outcome prediction. PMID:29354491
Oxidative Stress and Cardiac Remodeling: An Updated Edge. PMID:29332590
Non-coding RNAs and plant male sterility: current knowledge and future prospects. PMID:29332167
An Integrated Analysis of miRNAs and Methylated Genes Encoding mRNAs and lncRNAs in Sheep Breeds with Different Fecundity. PMID:29326596
Using Genome Sequence to Enable the Design of Medicines and Chemical Probes. PMID:29322778
Salicylic Acid Perturbs sRNA-Gibberellin Regulatory Network in Immune Response of Potato to Potato virus Y Infection. PMID:29312421
Three-Dimensional Cellular Arrangement in Epithelial Ovarian Cancer Cell Lines TOV-21G and SKOV-3 is Associated with Apoptosis-Related miRNA Expression Modulation. PMID:29307001
Rapid Communication: MicroRNA co-expression network reveals apoptosis in the reproductive tract during molting in laying hens. PMID:29293709
About miRNAs, miRNA seeds, target genes and target pathways. PMID:29291020
Tiresias: Context-sensitive Approach to Decipher the Presence and Strength of MicroRNA Regulatory Interactions. PMID:29290807
Development of Novel Therapeutic Agents by Inhibition of Oncogenic MicroRNAs. PMID:29280958
MicroRNA-505 is downregulated in human osteosarcoma and regulates cell proliferation, migration and invasion. PMID:29251324
Potential Contributions of miR-200a/-200b and Their Target Gene-Leptin to the Sexual Size Dimorphism in Yellow Catfish. PMID:29249979
Differential Expression of Serum MicroRNAs Supports CD4⁺ T Cell Differentiation into Th2/Th17 Cells in Severe Equine Asthma. PMID:29231896
RNAStructuromeDB: A genome-wide database for RNA structural inference. PMID:29222504
MiRIAD update: using alternative polyadenylation, protein interaction network analysis and additional species to enhance exploration of the role of intragenic miRNAs and their host genes. PMID:29220447
IL-11 promotes the treatment efficacy of hematopoietic stem cell transplant therapy in aplastic anemia model mice through a NF-κB/microRNA-204/thrombopoietin regulatory axis. PMID:29217821
G-Quadruplexes influence pri-microRNA processing. PMID:29171334
EPMDA: an expression-profile based computational model for microRNA-disease association prediction. PMID:29152061
Steps to achieve quantitative measurements of microRNA using two step droplet digital PCR. PMID:29145448
Circulating brain-enriched microRNAs as novel biomarkers for detection and differentiation of neurodegenerative diseases. PMID:29121998
Overexpression of microRNA-132 enhances the radiosensitivity of cervical cancer cells by down-regulating Bmi-1. PMID:29113342
A novel miRNA analysis framework to analyze differential biological networks. PMID:29097749
MMTV does not encode viral microRNAs but alters the levels of cancer-associated host microRNAs. PMID:29096160
The miRNA Expression Profile in Acute Myocardial Infarct Using Sheep Model with Left Ventricular Assist Device Unloading. PMID:29085838
miR156 switches on vegetative phase change under the regulation of redox signals in apple seedlings. PMID:29079841
sRNAnalyzer-a flexible and customizable small RNA sequencing data analysis pipeline. PMID:29069500
Biological function integrated prediction of severe radiographic progression in rheumatoid arthritis: a nested case control study. PMID:29065906
Computational deciphering of biotic stress associated genes in tomato (Solanum lycopersicum). PMID:29062693
MicroRNA-like RNAs in plant pathogenic fungus Fusarium oxysporum f. sp. niveum are involved in toxin gene expression fine tuning. PMID:29062675
In silico analysis of the grapefruit sRNAome, transcriptome and gene regulation in response to CTV-CDVd co-infection. PMID:29058618
Network analysis of EMT and MET micro-RNA regulation in breast cancer. PMID:29051564
Integrative testis transcriptome analysis reveals differentially expressed miRNAs and their mRNA targets during early puberty in Atlantic salmon. PMID:29047327
circRNA_0046367 Prevents Hepatoxicity of Lipid Peroxidation: An Inhibitory Role against Hepatic Steatosis. PMID:29018509
Identification of genome-wide non-canonical spliced regions and analysis of biological functions for spliced sequences using Read-Split-Fly. PMID:28984182
Circulating miRNA-24 and its target YKL-40 as potential biomarkers in patients with coronary heart disease and type 2 diabetes mellitus. PMID:28968969
Computational Identification of MicroRNAs and Their Transcript Target(s) in Field Mustard (Brassica rapa L.). PMID:28959349
Identification and analysis of differentially expressed long non-coding RNAs between multiparous and uniparous goat (Capra hircus) ovaries. PMID:28934224
Web-based NGS data analysis using miRMaster: a large-scale meta-analysis of human miRNAs. PMID:28911107
Correlation analyses revealed global microRNA-mRNA expression associations in human peripheral blood mononuclear cells. PMID:28879530
Advances in the Application and Impact of MicroRNAs as Therapies for Skin Disease. PMID:28875300
A miRNA catalogue and ncRNA annotation of the short-living fish Nothobranchius furzeri. PMID:28874118
DRMDA: deep representations-based miRNA-disease association prediction. PMID:28857494
Fine particulate matter 2.5 exerted its toxicological effect by regulating a new layer, long non-coding RNA. PMID:28839203
A Macro View of MicroRNAs: The Discovery of MicroRNAs and Their Role in Hematopoiesis and Hematologic Disease. PMID:28838543
MicroRNA-218 functions as a tumor suppressor in lung cancer by targeting IL-6/STAT3 and negatively correlates with poor prognosis. PMID:28830450
Deletion of Cytoplasmic Double-Stranded RNA Sensors Does Not Uncover Viral Small Interfering RNA Production in Human Cells. PMID:28815217
A pilot study comparing T-regulatory cell function among healthy children in different areas of Gansu, China. PMID:28808862
ODG: Omics database generator - a tool for generating, querying, and analyzing multi-omics comparative databases to facilitate biological understanding. PMID:28797229
Bioinformatics resources for deciphering the biogenesis and action pathways of plant small RNAs. PMID:28786034
Evaluation of high-throughput isomiR identification tools: illuminating the early isomiRome of Tribolium castaneum. PMID:28774263
SNPs, linkage disequilibrium, and chronic mountain sickness in Tibetan Chinese. PMID:28770234
Tough decoy targeting of predominant let-7 miRNA species in adult human hematopoietic cells. PMID:28768505
Genome-wide identification of soybean microRNA responsive to soybean cyst nematodes infection by deep sequencing. PMID:28768484
MiR-1254 suppresses HO-1 expression through seed region-dependent silencing and non-seed interaction with TFAP2A transcript to attenuate NSCLC growth. PMID:28749936
Whole blood microRNA expression may not be useful for screening non-small cell lung cancer. PMID:28742859
MicroRNAs: Roles in Regulating Neuroinflammation. PMID:28737113
Low genetic diversity and functional constraint of miRNA genes participating pollen-pistil interaction in rice. PMID:28735504
Investigation of the molecular mechanisms underlying myotonic dystrophy types 1 and 2 cataracts using microRNA‑target gene networks. PMID:28731161
Genome-wide analysis of long noncoding RNA profiling in PRRSV-infected PAM cells by RNA sequencing. PMID:28694521
miR‑199a‑3p is involved in the pathogenesis and progression of diabetic neuropathy through downregulation of SerpinE2. PMID:28677735
Identification and Characterization of miRNA Transcriptome in Asiatic Cotton (Gossypium arboreum) Using High Throughput Sequencing. PMID:28663752
MicroRNA-29a induces loss of 5-hydroxymethylcytosine and promotes metastasis of hepatocellular carcinoma through a TET-SOCS1-MMP9 signaling axis. PMID:28661477
microRNA in Cardiovascular Aging and Age-Related Cardiovascular Diseases. PMID:28660188
Methods of MicroRNA Promoter Prediction and Transcription Factor Mediated Regulatory Network. PMID:28656148
Discovery of Putative Herbicide Resistance Genes and Its Regulatory Network in Chickpea Using Transcriptome Sequencing. PMID:28638398
Comparative miRomics of Salt-Tolerant and Salt-Sensitive Rice. PMID:28637931
MicroRNA-containing extracellular vesicles released from endothelial colony-forming cells modulate angiogenesis during ischaemic retinopathy. PMID:28631889
A Panel of MicroRNAs as Diagnostic Biomarkers for the Identification of Prostate Cancer. PMID:28621736
Association between polymorphisms in pre-miRNA genes and risk of oral squamous cell cancer in a Chinese population. PMID:28609461
Improving biocuration of microRNAs in diseases: a case study in idiopathic pulmonary fibrosis. PMID:28605770
Gene and miRNA expression profiles of mouse Lewis lung carcinoma LLC1 cells following single or fractionated dose irradiation. PMID:28599420
Genome-wide identification and characterization of phased small interfering RNA genes in response to Botrytis cinerea infection in Solanum lycopersicum. PMID:28596514
Genome-wide profiling and differential expression of microRNA in rat pluripotent stem cells. PMID:28584262
The Binding Sites of miR-619-5p in the mRNAs of Human and Orthologous Genes. PMID:28569192
Characterization of basal and lipopolysaccharide-induced microRNA expression in equine peripheral blood mononuclear cells using Next-Generation Sequencing. PMID:28552958
Quantification of microRNAs directly from body fluids using a base-stacking isothermal amplification method in a point-of-care device. PMID:28536858
Cancer-derived Circulating MicroRNAs Promote Tumor Angiogenesis by Entering Dendritic Cells to Degrade Highly Complementary MicroRNAs. PMID:28529626
De novo Transcriptome Profiling of Flowers, Flower Pedicels and Pods of Lupinus luteus (Yellow Lupine) Reveals Complex Expression Changes during Organ Abscission. PMID:28512462
miR-30a-5p enhances paclitaxel sensitivity in non-small cell lung cancer through targeting BCL-2 expression. PMID:28487996
3' UTR G-quadruplexes regulate miRNA binding. PMID:28473452
Identification of differentially expressed Atlantic salmon miRNAs responding to salmonid alphavirus (SAV) infection. PMID:28472924
Renal Regenerative Potential of Different Extracellular Vesicle Populations Derived from Bone Marrow Mesenchymal Stromal Cells. PMID:28471327
miR-185-3p regulates the invasion and metastasis of nasopharyngeal carcinoma by targeting WNT2B in vitro. PMID:28454443
Genome-Wide Analyses of MicroRNA Profiling in Interleukin-27 Treated Monocyte-Derived Human Dendritic Cells Using Deep Sequencing: A Pilot Study. PMID:28452924
Preliminary evaluation of circulating microRNAs as potential biomarkers in paracoccidioidomycosis. PMID:28451399
Transcriptomic analysis of maternally provisioned cues for phenotypic plasticity in the annual killifish, Austrofundulus limnaeus. PMID:28439397
Cyclosporine A alters expression of renal microRNAs: New insights into calcineurin inhibitor nephrotoxicity. PMID:28414804
Protein-Coding Genes' Retrocopies and Their Functions. PMID:28406439
An update on stem cell biology and engineering for brain development. PMID:28373686
Delineating the impact of machine learning elements in pre-microRNA detection. PMID:28367373
NEArender: an R package for functional interpretation of 'omics' data via network enrichment analysis. PMID:28361684
MicroRNA exocytosis by large dense-core vesicle fusion. PMID:28358390
Estimating genome-wide regulatory activity from multi-omics data sets using mathematical optimization. PMID:28347313
High-throughput sequencing of pituitary and hypothalamic microRNA transcriptome associated with high rate of egg production. PMID:28335741
NCAM1 is the Target of miRNA-572: Validation in the Human Oligodendroglial Cell Line. PMID:28332001
Hepatic mitochondrial DNA/Toll-like receptor 9/MicroRNA-223 forms a negative feedback loop to limit neutrophil overactivation and acetaminophen hepatotoxicity in mice. PMID:28295449
MicroRNA-based Regulation of Picornavirus Tropism. PMID:28287517
De novo computational identification of stress-related sequence motifs and microRNA target sites in untranslated regions of a plant translatome. PMID:28276452
Influence of microRNAs and Long Non-Coding RNAs in Cancer Chemoresistance. PMID:28273813
Visual Display of 5p-arm and 3p-arm miRNA Expression with a Mobile Application. PMID:28271066
In silico identification of miRNAs and their target genes and analysis of gene co-expression network in saffron (Crocus sativus L.) stigma. PMID:28261627
Systems biology combining human- and animal-data miRNA and mRNA data identifies new targets in ureteropelvic junction obstruction. PMID:28249581
Identification and characterization of conserved miRNAs with its targets mRNA in Trichinella Spiralis. PMID:28246461
Altered expression profiles of microRNA families during de-etiolation of maize and rice leaves. PMID:28235420
Micro RNAs and DNA methylation are regulatory players in human cells with altered X chromosome to autosome balance. PMID:28233878
MiR-146a/b: a family with shared seeds and different roots. PMID:28213571
Defining age- and lactocrine-sensitive elements of the neonatal porcine uterine microRNA-mRNA interactome. PMID:28203709
MicroRNAs regulating cluster of differentiation 46 (CD46) in cardioembolic and non-cardioembolic stroke. PMID:28199366
Integrated genomic analyses of de novo pathways underlying atypical meningiomas. PMID:28195122
A specific dsRNA-binding protein complex selectively sequesters endogenous inverted-repeat siRNA precursors and inhibits their processing. PMID:28180322
MicroRNA 155 and viral-induced neuroinflammation. PMID:28139244
Regulation of miR-29b-1/a transcription and identification of target mRNAs in CHO-K1 cells. PMID:28137615
Identification of MiR-21-5p as a Functional Regulator of Mesothelin Expression Using MicroRNA Capture Affinity Coupled with Next Generation Sequencing. PMID:28125734
The Structure and Clinical Roles of MicroRNA in Colorectal Cancer. PMID:28115926
Roles of MIWI, MILI and PLD6 in small RNA regulation in mouse growing oocytes. PMID:28115634
miRNA-129-5p suppresses cell proliferation and invasion in lung cancer by targeting microspherule protein 1, E-cadherin and vimentin. PMID:28105223
Contextual Refinement of Regulatory Targets Reveals Effects on Breast Cancer Prognosis of the Regulome. PMID:28103241
Extracellular vesicle mediated intercellular communication at the porcine maternal-fetal interface: A new paradigm for conceptus-endometrial cross-talk. PMID:28079186
Novel blood-based microRNA biomarker panel for early diagnosis of chronic pancreatitis. PMID:28074846
Screening the key microRNAs and transcription factors in prostate cancer based on microRNA functional synergistic relationships. PMID:28072703
In vitro 3D model and miRNA drug delivery to target calcific aortic valve disease. PMID:28057890
Identification of coding and non-coding mutational hotspots in cancer genomes. PMID:28056774
Modulation of microRNA-mRNA Target Pairs by Human Papillomavirus 16 Oncoproteins. PMID:28049151
The Importance of Standardization on Analyzing Circulating RNA. PMID:28039578
Estimation of the human postmortem interval using an established rat mathematical model and multi-RNA markers. PMID:28032211
Bioinformatic tools for analysis of CLIP ribonucleoprotein data. PMID:28008714
Defining the purity of exosomes required for diagnostic profiling of small RNA suitable for biomarker discovery. PMID:28005467
miRNA profiling of human naive CD4 T cells links miR-34c-5p to cell activation and HIV replication. PMID:27993935
Rational Design of Small Molecules Targeting Oncogenic Noncoding RNAs from Sequence. PMID:27993012
Transcriptome profiling of the developing male germ line identifies the miR-29 family as a global regulator during meiosis. PMID:27981880
Snail-Modulated MicroRNA 493 Forms a Negative Feedback Loop with the Insulin-Like Growth Factor 1 Receptor Pathway and Blocks Tumorigenesis. PMID:27956702
PeTMbase: A Database of Plant Endogenous Target Mimics (eTMs). PMID:27936097
Milk protein polymorphisms and casein haplotypes in Butana cattle. PMID:27924448
MicroRNAs as paracrine signaling mediators in cancers and metabolic diseases. PMID:27923452
Increased expression of microRNA-148a in osteosarcoma promotes cancer cell growth by targeting PTEN. PMID:27899984
Prediction of human miRNA target genes using computationally reconstructed ancestral mammalian sequences. PMID:27899600
Biomarkers for precision medicine in bladder cancer. PMID:27896485
cPAS-based sequencing on the BGISEQ-500 to explore small non-coding RNAs. PMID:27895807
Regulatory network analysis of genes and microRNAs in human hepatoblastoma. PMID:27895778
LBSizeCleav: improved support vector machine (SVM)-based prediction of Dicer cleavage sites using loop/bulge length. PMID:27887571
Small RNA Library Preparation Method for Next-Generation Sequencing Using Chemical Modifications to Prevent Adapter Dimer Formation. PMID:27875576
Identification of urinary exosomal noncoding RNAs as novel biomarkers in chronic kidney disease. PMID:27872161
miRNAsong: a web-based tool for generation and testing of miRNA sponge constructs in silico. PMID:27857164
Systems analysis identifies miR-29b regulation of invasiveness in melanoma. PMID:27852308
MicroRNAs as therapeutics for future drug delivery systems in treatment of lung diseases. PMID:27848224
Identification and characterization of microRNAs expressed in the African malaria vector Anopheles funestus life stages using high throughput sequencing. PMID:27825380
Highly sensitive dual mode electrochemical platform for microRNA detection. PMID:27824137
Hyperglycaemia-induced reciprocal changes in miR-30c and PAI-1 expression in platelets. PMID:27819307
Identification of Binding Targets of a Pyrrole-Imidazole Polyamide KR12 in the LS180 Colorectal Cancer Genome. PMID:27798693
Multicentre validation of a microRNA-based assay for diagnosing indeterminate thyroid nodules utilising fine needle aspirate smears. PMID:27798083
Prognostic significance of miR-1268a expression and its beneficial effects for post-operative adjuvant transarterial chemoembolization in hepatocellular carcinoma. PMID:27796321
Novel equine tissue miRNAs and breed-related miRNA expressed in serum. PMID:27782799
Circulating MicroRNAs as Potential Biomarkers of Exercise Response. PMID:27782053
Determining the Roles of Inositol Trisphosphate Receptors in Neurodegeneration: Interdisciplinary Perspectives on a Complex Topic. PMID:27771899
Genome-Wide Anaplasma phagocytophilum AnkA-DNA Interactions Are Enriched in Intergenic Regions and Gene Promoters and Correlate with Infection-Induced Differential Gene Expression. PMID:27703927
Emerging role of microRNA-21 in cancer. PMID:27699004
MiR-4500 is epigenetically downregulated in colorectal cancer and functions as a novel tumor suppressor by regulating HMGA2. PMID:27686621
MicroRNA let-7f-5p Inhibits Porcine Reproductive and Respiratory Syndrome Virus by Targeting MYH9. PMID:27686528
The First Report of miRNAs from a Thysanopteran Insect, Thrips palmi Karny Using High-Throughput Sequencing. PMID:27685664
Sex-Biased Transcriptome of Schistosoma mansoni: Host-Parasite Interaction, Genetic Determinants and Epigenetic Regulators Are Associated with Sexual Differentiation. PMID:27677173
microRNA-372 Suppresses Migration and Invasion by Targeting p65 in Human Prostate Cancer Cells. PMID:27673408
Differences in miRNA and mRNA Profile of Papillary Thyroid Cancer Variants. PMID:27656207
Structural dynamics control the MicroRNA maturation pathway. PMID:27651454
MicroRNA 4323 induces human bladder smooth muscle cell proliferation under cyclic hydrodynamic pressure by activation of erk1/2 signaling pathway. PMID:27651435
Time-Course Small RNA Profiling Reveals Rice miRNAs and Their Target Genes in Response to Rice Stripe Virus Infection. PMID:27626631
Genome-scale mRNA and small RNA transcriptomic insights into initiation of citrus apomixis. PMID:27619233
The role of serum levels of microRNA-21 and matrix metalloproteinase-9 in patients with acute coronary syndrome. PMID:27590242
The roles of microRNAs and siRNAs in mammalian spermatogenesis. PMID:27578177
Transient resistance to DNA damaging agents is associated with expression of microRNAs-135b and -196b in human leukemia cell lines. PMID:27570640
Circular non-coding RNA ANRIL modulates ribosomal RNA maturation and atherosclerosis in humans. PMID:27539542
Sevoflurane represses the self-renewal ability by regulating miR-7a,7b/Klf4 signalling pathway in mouse embryonic stem cells. PMID:27535693
HGIMDA: Heterogeneous graph inference for miRNA-disease association prediction. PMID:27533456
Alpha-Defensin 5 Expression is Regulated by microRNAs in the Caco-2 Intestinal Epithelial Cell Line. PMID:27525335
Identification of extracellular miRNA in archived serum samples by next-generation sequencing from RNA extracted using multiple methods. PMID:27510798
The Expression of Human Cytomegalovirus MicroRNA MiR-UL148D during Latent Infection in Primary Myeloid Cells Inhibits Activin A-triggered Secretion of IL-6. PMID:27491954
Identification and Characterization of Salvia miltiorrhizain miRNAs in Response to Replanting Disease. PMID:27483013
Two-miRNA classifiers differentiate mutation-negative follicular thyroid carcinomas and follicular thyroid adenomas in fine needle aspirations with high specificity. PMID:27473101
Comparison of miRNAs and Their Targets in Seed Development between Two Maize Inbred Lines by High-Throughput Sequencing and Degradome Analysis. PMID:27463682
Identification and Characterization of Microsatellite Loci in Maqui (Aristotelia chilensis [Molina] Stunz) Using Next-Generation Sequencing (NGS). PMID:27459734
miRNA Profile in Three Different Normal Human Ocular Tissues by miRNA-Seq. PMID:27415791
Identification of novel candidate drivers connecting different dysfunctional levels for lung adenocarcinoma using protein-protein interactions and a shortest path approach. PMID:27412431
Genome Wide Identification and Functional Prediction of Long Non-Coding RNAs Responsive to Sclerotinia sclerotiorum Infection in Brassica napus. PMID:27388760
MicroRNAs, heart failure, and aging: potential interactions with skeletal muscle. PMID:27384434
Genetic variants in microRNA and microRNA biogenesis pathway genes and breast cancer risk among women of African ancestry. PMID:27380242
The role of microRNAs in respiratory viral infection: friend or foe? PMID:27373545
Circulating biomarkers to monitor cancer progression and treatment. PMID:27358717
Genome-Wide Detection of CNVs and Their Association with Meat Tenderness in Nelore Cattle. PMID:27348523
A survey of the sorghum transcriptome using single-molecule long reads. PMID:27339290
The Ensembl gene annotation system. PMID:27337980
Comprehensive analysis of high-throughput screens with HiTSeekR. PMID:27330136
RNA-seq studies using wheat PHYTOCHROME B and PHYTOCHROME C mutants reveal shared and specific functions in the regulation of flowering and shade-avoidance pathways. PMID:27329140
Reconstructing the temporal progression of HIV-1 immune response pathways. PMID:27307624
A comprehensive view of the web-resources related to sericulture. PMID:27307138
MicroRNA-33a-3p suppresses cell migration and invasion by directly targeting PBX3 in human hepatocellular carcinoma. PMID:27285759
Web-based tools for microRNAs involved in human cancer. PMID:27284356
Prognostic role of miR-9 expression in various human malignant neoplasms: a meta-analysis. PMID:27284255
MiR675-5p Acts on HIF-1α to Sustain Hypoxic Responses: A New Therapeutic Strategy for Glioma. PMID:27279905
DREMECELS: A Curated Database for Base Excision and Mismatch Repair Mechanisms Associated Human Malignancies. PMID:27276067
Post-transcriptional knowledge in pathway analysis increases the accuracy of phenotypes classification. PMID:27275538
Analysis of miRNAs and their target genes associated with lipid metabolism in duck liver. PMID:27272010
Diagnostic value of microRNAs in asbestos exposure and malignant mesothelioma: systematic review and qualitative meta-analysis. PMID:27259231
Prediction of miRNA-disease associations with a vector space model. PMID:27246786
Identification of associations between small molecule drugs and miRNAs based on functional similarity. PMID:27232942
miR-190 Enhances HIF-Dependent Responses to Hypoxia in Drosophila by Inhibiting the Prolyl-4-hydroxylase Fatiga. PMID:27223464
TarPmiR: a new approach for microRNA target site prediction. PMID:27207945
The Role of microRNAs in the Repeated Parallel Diversification of Lineages of Midas Cichlid Fish from Nicaragua. PMID:27189980
microRNAs in the Same Clusters Evolve to Coordinately Regulate Functionally Related Genes. PMID:27189568
Normalization for Relative Quantification of mRNA and microRNA in Soybean Exposed to Various Abiotic Stresses. PMID:27176476
Targeting oncomiRNAs and mimicking tumor suppressor miRNAs: Νew trends in the development of miRNA therapeutic strategies in oncology (Review). PMID:27175518
LimiTT: link miRNAs to targets. PMID:27170328
Composition and genomic organization of arthropod Hox clusters. PMID:27168931
Significance of microRNA-related variants in susceptibility to recurrence of oropharyngeal cancer patients after definitive radiotherapy. PMID:27145460
N(ϵ) -Carboxymethyllysine Increases the Expression of miR-103/143 and Enhances Lipid Accumulation in 3T3-L1 Cells. PMID:27137869
miEAA: microRNA enrichment analysis and annotation. PMID:27131362
New Concepts in Cancer Biomarkers: Circulating miRNAs in Liquid Biopsies. PMID:27128908
Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs. PMID:27128807
The Three Paralogous MicroRNA Clusters in Development and Disease, miR-17-92, miR-106a-363, and miR-106b-25. PMID:27127675
Urinary Exosomal microRNA-451-5p Is a Potential Early Biomarker of Diabetic Nephropathy in Rats. PMID:27101382
Characterization of the Small RNA Transcriptome of the Marine Coccolithophorid, Emiliania huxleyi. PMID:27101007
Analysis of wheat microspore embryogenesis induction by transcriptome and small RNA sequencing using the highly responsive cultivar "Svilena". PMID:27098368
Host genetic predictors of the kynurenine pathway of tryptophan catabolism among treated HIV-infected Ugandans. PMID:27088321
Genome-Wide Identification and Characterization of microRNAs in Developing Grains of Zea mays L. PMID:27082634
PmiRExAt: plant miRNA expression atlas database and web applications. PMID:27081157
A combinatorial approach to the repertoire of RNA kissing motifs; towards multiplex detection by switching hairpin aptamers. PMID:27067541
Differential regulation of serum microRNA expression by HNF1β and HNF1α transcription factors. PMID:27059371
Identification and conformational analysis of putative microRNAs in Maruca vitrata (Lepidoptera: Pyralidae). PMID:27054079
Pre-miRNA variants as predictors of clinical outcome in patients with squamous cell carcinomas of the nonoropharynx. PMID:27050146
MicroRNAs in Lymphoma: Regulatory Role and Biomarker Potential. PMID:27047255
isomiR-SEA: an RNA-Seq analysis tool for miRNAs/isomiRs expression level profiling and miRNA-mRNA interaction sites evaluation. PMID:27036505
Two host microRNAs influence WSSV replication via STAT gene regulation. PMID:27029712
Rbfox proteins regulate microRNA biogenesis by sequence-specific binding to their precursors and target downstream Dicer. PMID:27001519
In silico genome wide mining of conserved and novel miRNAs in the brain and pineal gland of Danio rerio using small RNA sequencing data. PMID:26981358
Mutual antagonism between hepatitis B viral mRNA and host microRNA let-7. PMID:26979389
MiRComb: An R Package to Analyse miRNA-mRNA Interactions. Examples across Five Digestive Cancers. PMID:26967326
Integrative analysis of microRNA and mRNA expression profiles in non-small-cell lung cancer. PMID:26964645
Changes in the miRNA-mRNA Regulatory Network Precede Motor Symptoms in a Mouse Model of Multiple System Atrophy: Clinical Implications. PMID:26962858
Comparative Transcriptomic Analysis of Rectal Tissue from Beef Steers Revealed Reduced Host Immunity in Escherichia coli O157:H7 Super-Shedders. PMID:26959367
The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. PMID:26950095
Transcriptional and post-transcriptional regulation of NK cell development and function. PMID:26948928
Long non-coding RNA containing ultraconserved genomic region 8 promotes bladder cancer tumorigenesis. PMID:26943042
Chicken gga-miR-103-3p Targets CCNE1 and TFDP2 and Inhibits MDCC-MSB1 Cell Migration. PMID:26935418
Characterization of an extensive rainbow trout miRNA transcriptome by next generation sequencing. PMID:26931235
Distribution of miRNA expression across human tissues. PMID:26921406
Computational identification and comparative analysis of miRNA precursors in three palm species. PMID:26919984
3'UTR Shortening Potentiates MicroRNA-Based Repression of Pro-differentiation Genes in Proliferating Human Cells. PMID:26908102
A genetic variation in microRNA target site of ETS2 is associated with clinical outcomes of paclitaxel-cisplatin chemotherapy in non-small cell lung cancer. PMID:26893365
Role of apoptosis-related miRNAs in resveratrol-induced breast cancer cell death. PMID:26890143
WBSMDA: Within and Between Score for MiRNA-Disease Association prediction. PMID:26880032
MiR-125a promotes paclitaxel sensitivity in cervical cancer through altering STAT3 expression. PMID:26878391
Deep characterization of blood cell miRNomes by NGS. PMID:26874686
Integrative microRNA and gene profiling data analysis reveals novel biomarkers and mechanisms for lung cancer. PMID:26870998
Prediction of Immunomodulatory potential of an RNA sequence for designing non-toxic siRNAs and RNA-based vaccine adjuvants. PMID:26861761
Integration of Multiple Genomic and Phenotype Data to Infer Novel miRNA-Disease Associations. PMID:26849207
Role of Epigenetics in Stem Cell Proliferation and Differentiation: Implications for Treating Neurodegenerative Diseases. PMID:26848657
Topological characteristics of target genes regulated by abiotic-stress-responsible miRNAs in a rice interactome network. PMID:26830287
Biological Processes Discovered by High-Throughput Sequencing. PMID:26828742
Curcumin inhibits the proliferation and invasion of human osteosarcoma cell line MG-63 by regulating miR-138. PMID:26823826
DNA methylation in the pathophysiology of hyperphenylalaninemia in the PAH(enu2) mouse model of phenylketonuria. PMID:26822703
High-resolution analysis of the human retina miRNome reveals isomiR variations and novel microRNAs. PMID:26819412
Missing value imputation for microRNA expression data by using a GO-based similarity measure. PMID:26818962
Differentially Expressed miRNAs in Hepatocellular Carcinoma Target Genes in the Genetic Information Processing and Metabolism Pathways. PMID:26817861
Expression Profiles and Biological Roles of miR-196a in Swine. PMID:26805888
A Simple Alternative to Stereotactic Injection for Brain Specific Knockdown of miRNA. PMID:26779762
Integrative meta-analysis identifies microRNA-regulated networks in infantile hemangioma. PMID:26772808
Computational identification of putative miRNAs and their target genes in pathogenic amoeba Naegleria fowleri. PMID:26770029
Ammonia-induced miRNA expression changes in cultured rat astrocytes. PMID:26755400
Identification and characterization of microRNAs in the plant parasitic root-knot nematode Meloidogyne incognita using deep sequencing. PMID:26743520
MicroRNA Profiles in Spontaneous Decidualized Menstrual Endometrium and Early Pregnancy Decidua with Successfully Implanted Embryos. PMID:26735129
Novel Insights into Guide RNA 5'-Nucleoside/Tide Binding by Human Argonaute 2. PMID:26712743
MiR-218 Inhibits Erythroid Differentiation and Alters Iron Metabolism by Targeting ALAS2 in K562 Cells. PMID:26703568
The role of microRNAs in cardiac development and regenerative capacity. PMID:26702142
An approach to identify the novel miRNA encoded from H. Annuus EST sequences. PMID:26697356
MicroRNA-764-3p regulates 17β-estradiol synthesis of mouse ovarian granulosa cells by targeting steroidogenic factor-1. PMID:26676955
High-throughput deep screening and identification of four peripheral leucocyte microRNAs as novel potential combination biomarkers for preeclampsia. PMID:26675000
Casein kinase II promotes target silencing by miRISC through direct phosphorylation of the DEAD-box RNA helicase CGH-1. PMID:26669440
A pH Sensitive High-Throughput Assay for miRNA Binding of a Peptide-Aminoglycoside (PA) Library. PMID:26656788
Genomic legacy of the African cheetah, Acinonyx jubatus. PMID:26653294
Bioinformatics approach to predict target genes for dysregulated microRNAs in hepatocellular carcinoma: study on a chemically-induced HCC mouse model. PMID:26652480
MicroRNA Expression Profile during Aphid Feeding in Chrysanthemum (Chrysanthemum morifolium). PMID:26650759
Prediction of microRNA target genes using an efficient genetic algorithm-based decision tree. PMID:26649272
MicroRNA miR124 is required for the expression of homeostatic synaptic plasticity. PMID:26620774
1α,25-Dihydroxyvitamin D3 Regulates Mitochondrial Oxygen Consumption and Dynamics in Human Skeletal Muscle Cells. PMID:26601949
Towards Clinical Applications of Blood-Borne miRNA Signatures: The Influence of the Anticoagulant EDTA on miRNA Abundance. PMID:26599228
MicroRNA expression is altered in lateral septum across reproductive stages. PMID:26592715
Inferring Selective Constraint from Population Genomic Data Suggests Recent Regulatory Turnover in the Human Brain. PMID:26590212
Evolutionarily Dynamic, but Robust, Targeting of Resistance Genes by the miR482/2118 Gene Family in the Solanaceae. PMID:26590211
Differential expression of miRNAs in pancreatobiliary type of periampullary adenocarcinoma and its associated stroma. PMID:26590090
DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators. PMID:26586797
Expression Profiles of Estrogen-Regulated MicroRNAs in Breast Cancer Cells. PMID:26585151
GREENC: a Wiki-based database of plant lncRNAs. PMID:26578586
High-throughput sequencing of RNAs isolated by cross-linking immunoprecipitation (HITS-CLIP) reveals Argonaute-associated microRNAs and targets in Schistosoma japonicum. PMID:26577460
Deep sequencing of small RNA facilitates tissue and sex associated microRNA discovery in zebrafish. PMID:26574018
iSRAP - a one-touch research tool for rapid profiling of small RNA-seq data. PMID:26561006
Cardiac Disease Status Dictates Functional mRNA Targeting Profiles of Individual MicroRNAs. PMID:26553694
Expression of microRNAs and isomiRs in the porcine endometrium: implications for gene regulation at the maternal-conceptus interface. PMID:26546342
Coexpression Network Analysis of miRNA-142 Overexpression in Neuronal Cells. PMID:26539539
Differential microRNA Expression in Fast- and Slow-Twitch Skeletal Muscle of Piaractus mesopotamicus during Growth. PMID:26529415
Deep sequencing shows microRNA involvement in bovine mammary gland adaptation to diets supplemented with linseed oil or safflower oil. PMID:26519053
Human microRNAs profiling in response to influenza A viruses (subtypes pH1N1, H3N2, and H5N1). PMID:26518627
A feedback regulatory loop involving p53/miR-200 and growth hormone endocrine axis controls embryo size of zebrafish. PMID:26507500
Identification of Novel and Conserved miRNAs from Extreme Halophyte, Oryza coarctata, a Wild Relative of Rice. PMID:26506249
RNAome sequencing delineates the complete RNA landscape. PMID:26484291
Identification and profiling of conserved and novel microRNAs in Laodelphax striatellus in response to rice black-streaked dwarf virus (RBSDV) infection. PMID:26484150
Computational identification of microRNAs and their targets in Catharanthus roseus expressed sequence tags. PMID:26484050
The Role of MicroRNAs as Predictors of Response to Tamoxifen Treatment in Breast Cancer Patients. PMID:26473850
miR-711 upregulation induces neuronal cell death after traumatic brain injury. PMID:26470728
Transcriptome-wide investigation of circular RNAs in rice. PMID:26464523
CircNet: a database of circular RNAs derived from transcriptome sequencing data. PMID:26450965
PGC-Enriched miRNAs Control Germ Cell Development. PMID:26442865
Identification of Novel and Conserved microRNAs in Homalodisca vitripennis, the Glassy-Winged Sharpshooter by Expression Profiling. PMID:26440407
Degradation of miR-21 induces apoptosis and inhibits cell proliferation in human hepatocellular carcinoma. PMID:26427512
MicroRNA-216b is Down-Regulated in Human Gastric Adenocarcinoma and Inhibits Proliferation and Cell Cycle Progression by Targeting Oncogene HDAC8. PMID:26408293
Differential microRNA Analysis of Glandular Trichomes and Young Leaves in Xanthium strumarium L. Reveals Their Putative Roles in Regulating Terpenoid Biosynthesis. PMID:26406988
Identification of Biomarker and Co-Regulatory Motifs in Lung Adenocarcinoma Based on Differential Interactions. PMID:26402252
The association between let-7, RAS and HIF-1α in Ewing Sarcoma tumor growth. PMID:26393682
Bioinformatic Interrogation of 5p-arm and 3p-arm Specific miRNA Expression Using TCGA Datasets. PMID:26389959
MiR-125a suppresses tumor growth, invasion and metastasis in cervical cancer by targeting STAT3. PMID:26389681
microRNA-30b inhibits cell invasion and migration through targeting collagen triple helix repeat containing 1 in non-small cell lung cancer. PMID:26388700
Computational functional genomics based analysis of pain-relevant micro-RNAs. PMID:26385553
Epstein-Barr Virus MicroRNA Expression Increases Aggressiveness of Solid Malignancies. PMID:26375401
Regulatory RNAs and control of epigenetic mechanisms: expectations for cognition and cognitive dysfunction. PMID:26366811
Exploration of the R code-based mathematical model for PMI estimation using profiling of RNA degradation in rat brain tissue at different temperatures. PMID:26363634
Cross Platform Standardisation of an Experimental Pipeline for Use in the Identification of Dysregulated Human Circulating MiRNAs. PMID:26355751
A legion of potential regulatory sRNAs exists beyond the typical microRNAs microcosm. PMID:26354861
Identification of novel microRNA signatures linked to acquired aplastic anemia. PMID:26354756
Discovery of a Novel Immune Gene Signature with Profound Prognostic Value in Colorectal Cancer: A Model of Cooperativity Disorientation Created in the Process from Development to Cancer. PMID:26325386
Integration of extracellular RNA profiling data using metadata, biomedical ontologies and Linked Data technologies. PMID:26320941
Citing a Data Repository: A Case Study of the Protein Data Bank. PMID:26317409
Meta-analysis of shared genetic architecture across ten pediatric autoimmune diseases. PMID:26301688
MicroRNA-Sequence Profiling Reveals Novel Osmoregulatory MicroRNA Expression Patterns in Catadromous Eel Anguilla marmorata. PMID:26301415
MicroRNA-Based Therapeutic Strategies for Targeting Mutant and Wild Type RAS in Cancer. PMID:26284568
Hypomethylation of miR-142 promoter and upregulation of microRNAs that target the oxytocin receptor gene in the autism prefrontal cortex. PMID:26273428
Profiling of the small RNA populations in human testicular germ cell tumors shows global loss of piRNAs. PMID:26265322
Mining expressed sequence tags of rapeseed (Brassica napus L.) to predict the drought responsive regulatory network. PMID:26261397
Integrated analysis of miRNA, gene, and pathway regulatory networks in hepatic cancer stem cells. PMID:26259570
High-Throughput miRNA Sequencing Reveals a Field Effect in Gastric Cancer and Suggests an Epigenetic Network Mechanism. PMID:26244015
Systematic functional genomics resource and annotation for poplar. PMID:26243833
miRegulome: a knowledge-base of miRNA regulomics and analysis. PMID:26243198
ARM-seq: AlkB-facilitated RNA methylation sequencing reveals a complex landscape of modified tRNA fragments. PMID:26237225
OCDB: a database collecting genes, miRNAs and drugs for obsessive-compulsive disorder. PMID:26228432
MicroRNAs: New Biomarkers for Diagnosis, Prognosis, Therapy Prediction and Therapeutic Tools for Breast Cancer. PMID:26199650
Creating reference gene annotation for the mouse C57BL6/J genome assembly. PMID:26187010
p53-Regulated Networks of Protein, mRNA, miRNA, and lncRNA Expression Revealed by Integrated Pulsed Stable Isotope Labeling With Amino Acids in Cell Culture (pSILAC) and Next Generation Sequencing (NGS) Analyses. PMID:26183718
Neurotensin signaling stimulates glioblastoma cell proliferation by upregulating c-Myc and inhibiting miR-29b-1 and miR-129-3p. PMID:26180082
Tumor-suppressive microRNA-497 targets IKKβ to regulate NF-κB signaling pathway in human prostate cancer cells. PMID:26175947
Analysis of Deregulated microRNAs and Their Target Genes in Gastric Cancer. PMID:26172537
MicroRNA-490-5p is a novel tumor suppressor targeting c-FOS in human bladder cancer. PMID:26170849
The microRNA-183 cluster: the family that plays together stays together. PMID:26170234
Identification of MicroRNAs in Response to Different Day Lengths in Soybean Using High-Throughput Sequencing and qRT-PCR. PMID:26162069
MicroRNA Expression Profile in Penile Cancer Revealed by Next-Generation Small RNA Sequencing. PMID:26158897
Transcriptome analysis of mRNA and miRNA in skeletal muscle indicates an important network for differential Residual Feed Intake in pigs. PMID:26150313
NPK macronutrients and microRNA homeostasis. PMID:26136763
KRAS-dependent sorting of miRNA to exosomes. PMID:26132860
QuickNGS elevates Next-Generation Sequencing data analysis to a new level of automation. PMID:26126663
The circulating transcriptome as a source of non-invasive cancer biomarkers: concepts and controversies of non-coding and coding RNA in body fluids. PMID:26119132
miR-1322 Binding Sites in Paralogous and Orthologous Genes. PMID:26114118
Small RNAs in metastatic and non-metastatic oral squamous cell carcinoma. PMID:26104160
Expression Profiling of Circulating MicroRNAs in Canine Myxomatous Mitral Valve Disease. PMID:26101868
Human miR-3145 inhibits influenza A viruses replication by targeting and silencing viral PB1 gene. PMID:26080461
Robust Distal Tip Cell Pathfinding in the Face of Temperature Stress Is Ensured by Two Conserved microRNAS in Caenorhabditis elegans. PMID:26078280
piRNA-like small RNAs mark extended 3'UTRs present in germ and somatic cells. PMID:26076733
Evolutionary and expression analysis of miR-#-5p and miR-#-3p at the miRNAs/isomiRs levels. PMID:26075215
Function and evolution of microRNAs in eusocial Hymenoptera. PMID:26074950
Computational prediction of miRNAs and their targets in Phaseolus vulgaris using simple sequence repeat signatures. PMID:26067253
Study on the molecular regulatory mechanism of MicroRNA-195 in the invasion and metastasis of colorectal carcinoma. PMID:26064276
Dual regulation by microRNA-200b-3p and microRNA-200b-5p in the inhibition of epithelial-to-mesenchymal transition in triple-negative breast cancer. PMID:26062653
A cross comparison of technologies for the detection of microRNAs in clinical FFPE samples of hepatoblastoma patients. PMID:26039282
Principles of miRNA-mRNA interactions: beyond sequence complementarity. PMID:26037721
MiR-2 family targets awd and fng to regulate wing morphogenesis in Bombyx mori. PMID:26037405
The miR-200 family differentially regulates sensitivity to paclitaxel and carboplatin in human ovarian carcinoma OVCAR-3 and MES-OV cells. PMID:26025631
Translational regulation shapes the molecular landscape of complex disease phenotypes. PMID:26007203
High-throughput sequencing reveals altered expression of hepatic microRNAs in nonalcoholic fatty liver disease-related fibrosis. PMID:26001595
Transcripts and MicroRNAs Responding to Salt Stress in Musa acuminata Colla (AAA Group) cv. Berangan Roots. PMID:25993649
The oncogenic microRNA miR-21 promotes regulated necrosis in mice. PMID:25990308
Integrated miRNA and mRNA Analysis of Time Series Microarray Data. PMID:25988189
MicroRNA in Ovarian Biology and Disease. PMID:25986593
GraP: platform for functional genomics analysis of Gossypium raimondii. PMID:25982315
An overview of microRNAs. PMID:25979468
miR-181a-5p Inhibits Cancer Cell Migration and Angiogenesis via Downregulation of Matrix Metalloproteinase-14. PMID:25977338
Small RNA Profiling of Two Important Cultivars of Banana and Overexpression of miRNA156 in Transgenic Banana Plants. PMID:25962076
Bias in ligation-based small RNA sequencing library construction is determined by adaptor and RNA structure. PMID:25942392
Dgcr8 and Dicer are essential for sex chromosome integrity during meiosis in males. PMID:25934699
MicroRNA-146a modulates B-cell oncogenesis by regulating Egr1. PMID:25906746
miRiadne: a web tool for consistent integration of miRNA nomenclature. PMID:25897123
Isoflurane Inhibits Embryonic Stem Cell Self-Renewal and Neural Differentiation Through miR-9/E-cadherin Signaling. PMID:25892252
Dynamic expression of miRNAs across immature and adult stages of the malaria mosquito Anopheles stephensi. PMID:25888742
Annotation of the goat genome using next generation sequencing of microRNA expressed by the lactating mammary gland: comparison of three approaches. PMID:25888052
Unique patterns of transcript and miRNA expression in the South American strong voltage electric eel (Electrophorus electricus). PMID:25887781
Nasal mucosal microRNA expression in children with respiratory syncytial virus infection. PMID:25884957
ANDSystem: an Associative Network Discovery System for automated literature mining in the field of biology. PMID:25881313
Developing a prognostic micro-RNA signature for human cervical carcinoma. PMID:25880806
Differentially expressed microRNAs in postpartum breast cancer in Hispanic women. PMID:25875827
Improving small RNA-seq by using a synthetic spike-in set for size-range quality control together with a set for data normalization. PMID:25870415
Transcript and protein expression decoupling reveals RNA binding proteins and miRNAs as potential modulators of human aging. PMID:25853883
Deciphering the RNA landscape by RNAome sequencing. PMID:25826412
MicroRNA-155 expression is independently predictive of outcome in chordoma. PMID:25823817
SubmiRine: assessing variants in microRNA targets using clinical genomic data sets. PMID:25813044
MiR-2 family regulates insect metamorphosis by controlling the juvenile hormone signaling pathway. PMID:25775510
microRNA-200b as a Switch for Inducible Adult Angiogenesis. PMID:25761972
Dependence of intracellular and exosomal microRNAs on viral E6/E7 oncogene expression in HPV-positive tumor cells. PMID:25760330
Contribution of Intronic miR-338-3p and Its Hosting Gene AATK to Compensatory β-Cell Mass Expansion. PMID:25751313
MicroRNAs as potential biomarkers for noninvasive detection of fetal trisomy 21. PMID:25749789
Genome-wide DNA methylome analysis reveals epigenetically dysregulated non-coding RNAs in human breast cancer. PMID:25739977
Hsa-microRNA-181a is a regulator of a number of cancer genes and a biomarker for endometrial carcinoma in patients: a bioinformatic and clinical study and the therapeutic implication. PMID:25733820
High-throughput RNA profiling via up-front sample parallelization. PMID:25730493
Identification of novel miRNAs and miRNA expression profiling in wheat hybrid necrosis. PMID:25706289
Antiviral responses of arthropod vectors: an update on recent advances. PMID:25674592
Overexpression of microRNA-16 declines cellular growth, proliferation and induces apoptosis in human breast cancer cells. PMID:25672252
miRNAs regulated by estrogens, tamoxifen, and endocrine disruptors and their downstream gene targets. PMID:25659536
Duplicate gene divergence by changes in microRNA binding sites in Arabidopsis and Brassica. PMID:25644246
Dysregulation of miR-34a links neuronal development to genetic risk factors for bipolar disorder. PMID:25623948
Discovery of mosquito saliva microRNAs during CHIKV infection. PMID:25612225
Characterization of miRNAs associated with Botrytis cinerea infection of tomato leaves. PMID:25592487
Interactions between cancer cells and normal cells via miRNAs in extracellular vesicles. PMID:25563488
Impulsivity and comorbid traits: a multi-step approach for finding putative responsible microRNAs in the amygdala. PMID:25561905
MicroRNA and messenger RNA profiling reveals new biomarkers and mechanisms for RDX induced neurotoxicity. PMID:25559034
mir-155 regulates cardiac allograft rejection by targing the expression of suppressor of cytokine signaling-1 (DOCS1) in dendritic cells. PMID:25550988
Universal stem-loop primer method for screening and quantification of microRNA. PMID:25548906
Validation of miRNA genes suitable as reference genes in qPCR analyses of miRNA gene expression in Atlantic salmon (Salmo salar). PMID:25533334
mirPub: a database for searching microRNA publications. PMID:25527833
mRNA and miRNA regulatory networks reflective of multi-walled carbon nanotube-induced lung inflammatory and fibrotic pathologies in mice. PMID:25527334
MicroRNA-21 Down-regulates Rb1 Expression by Targeting PDCD4 in Retinoblastoma. PMID:25520758
Comparative analysis of the conserved functions of Arabidopsis DRL1 and yeast KTI12. PMID:25518926
The miR-322-TRAF3 circuit mediates the pro-apoptotic effect of high glucose on neural stem cells. PMID:25516495
Development of plants resistant to tomato geminiviruses using artificial trans-acting small interfering RNA. PMID:25512230
Overexpression of miR-21-5p as a predictive marker for complete tumor regression to neoadjuvant chemoradiotherapy in rectal cancer patients. PMID:25496125
The involvement of miR-100 in bladder urothelial carcinogenesis changing the expression levels of mRNA and proteins of genes related to cell proliferation, survival, apoptosis and chromosomal stability. PMID:25493074
p53 shapes genome-wide and cell type-specific changes in microRNA expression during the human DNA damage response. PMID:25486198
An evaluation and replication of miRNAs with disease stage and colorectal cancer-specific mortality. PMID:25484364
MicroRNAs: new players in IBD. PMID:25475103
The COPD Knowledge Base: enabling data analysis and computational simulation in translational COPD research. PMID:25471253
miRNAs can be generally associated with human pathologies as exemplified for miR-144. PMID:25465851
The dicer-like1 homolog fuzzy tassel is required for the regulation of meristem determinacy in the inflorescence and vegetative growth in maize. PMID:25465405
Diversity, expression and mRNA targeting abilities of Argonaute-targeting miRNAs among selected vascular plants. PMID:25443390
Detection of hypoxia markers in the cerebellum after a traumatic frontal cortex injury: a human postmortem gene expression analysis. PMID:25432860
Non-coding RNA gene families in the genomes of anopheline mosquitoes. PMID:25432596
MiR-520d-5p directly targets TWIST1 and downregulates the metastamiR miR-10b. PMID:25426550
microRNA-141 inhibits cell proliferation and invasion and promotes apoptosis by targeting hepatocyte nuclear factor-3β in hepatocellular carcinoma cells. PMID:25425543
Mature miRNAs form secondary structure, which suggests their function beyond RISC. PMID:25423301
miR-1228 promotes the proliferation and metastasis of hepatoma cells through a p53 forward feedback loop. PMID:25422913
MicroRNA-940 suppresses prostate cancer migration and invasion by regulating MIEN1. PMID:25406943
What do all the (human) micro-RNAs do? PMID:25404408
Current transcriptomics in pig immunity research. PMID:25398484
Heterogeneity and individuality: microRNAs in mental disorders. PMID:25395183
Prediction of MicroRNA Precursors Using Parsimonious Feature Sets. PMID:25392687
VIRmiRNA: a comprehensive resource for experimentally validated viral miRNAs and their targets. PMID:25380780
MicroRNAs as predictive biomarkers and therapeutic targets in prostate cancer. PMID:25374924
Discovery and analysis of microRNAs in Leymus chinensis under saline-alkali and drought stress using high-throughput sequencing. PMID:25369004
What makes a blood cell based miRNA expression pattern disease specific?--a miRNome analysis of blood cell subsets in lung cancer patients and healthy controls. PMID:25344866
Transcriptional and epigenetic responses to mating and aging in Drosophila melanogaster. PMID:25344338
MicroRNA polymorphisms and risk of colorectal cancer. PMID:25342389
Role of MicroRNAs in Hepatocellular Carcinoma. PMID:25337143
Integrated mRNA-microRNA profiling of human NK cell differentiation identifies MiR-583 as a negative regulator of IL2Rγ expression. PMID:25313504
miR-19, a component of the oncogenic miR-17∼92 cluster, targets the DNA-end resection factor CtIP. PMID:25308476
Exploring the miRNA regulatory network using evolutionary correlations. PMID:25299225
miR-185-3p regulates nasopharyngeal carcinoma radioresistance by targeting WNT2B in vitro. PMID:25297925
Identification and characterization of Wilt and salt stress-responsive microRNAs in chickpea through high-throughput sequencing. PMID:25295754
Evaluation of miR-720 prognostic significance in patients with colorectal cancer. PMID:25286763
The impact of hepatitis B virus x protein and microRNAs in hepatocellular carcinoma: a comprehensive analysis. PMID:25286757
The prognostic significance of RUNX2 and miR-10a/10b and their inter-relationship in breast cancer. PMID:25266482
MiR-122 directly inhibits human papillomavirus E6 gene and enhances interferon signaling through blocking suppressor of cytokine signaling 1 in SiHa cells. PMID:25265013
RNA expression profiling of human iPSC-derived cardiomyocytes in a cardiac hypertrophy model. PMID:25255322
The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing. PMID:25230983
IsomiR expression profiles in human lymphoblastoid cell lines exhibit population and gender dependencies. PMID:25229428
Differential microRNA expression profile between stimulated PBMCs from HIV-1 infected elite controllers and viremic progressors. PMID:25225963
Selective microRNA uridylation by Zcchc6 (TUT7) and Zcchc11 (TUT4). PMID:25223788
Rolling-circle transposons catalyze genomic innovation in a mammalian lineage. PMID:25223768
Host miR-26a suppresses replication of porcine reproductive and respiratory syndrome virus by upregulating type I interferons. PMID:25218480
MicroRNA-146a and microRNA-146b expression and anti-inflammatory function in human airway smooth muscle. PMID:25217662
Functional Role of the microRNA-200 Family in Breast Morphogenesis and Neoplasia. PMID:25216122
Maize protein phosphatase gene family: identification and molecular characterization. PMID:25199535
MiR-3960 binding sites with mRNA of human genes. PMID:25187682
MiR-7 promotes epithelial cell transformation by targeting the tumor suppressor KLF4. PMID:25181544
MicroRNA-645, up-regulated in human adencarcinoma of gastric esophageal junction, inhibits apoptosis by targeting tumor suppressor IFIT2. PMID:25174799
Patterns of miRNA expression in Arctic charr development. PMID:25170615
MIRPIPE: quantification of microRNAs in niche model organisms. PMID:25165094
Big endothelin changes the cellular miRNA environment in TMOb osteoblasts and increases mineralization. PMID:25158193
miRBase Tracker: keeping track of microRNA annotation changes. PMID:25157074
Protein expression and promoter methylation of the candidate biomarker TCF21 in gastric cancer. PMID:25156819
Annotated features of domestic cat - Felis catus genome. PMID:25143822
Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing. PMID:25128405
A quest for miRNA bio-marker: a track back approach from gingivo buccal cancer to two different types of precancers. PMID:25126847
hsa-mir-30c promotes the invasive phenotype of metastatic breast cancer cells by targeting NOV/CCN3. PMID:25120384
MicroRNA and Male Infertility: A Potential for Diagnosis. PMID:25083174
Genome-wide analysis of salt-responsive and novel microRNAs in Populus euphratica by deep sequencing. PMID:25079824
Different microRNA profiles in chronic epilepsy versus acute seizure mouse models. PMID:25078263
MicroRNA regulation of mitogenic signaling networks in the human placenta. PMID:25077964
A knowledge base for the discovery of function, diagnostic potential and drug effects on cellular and extracellular miRNAs. PMID:25077952
MicroRNA-138 is a potential regulator of memory performance in humans. PMID:25071529
An effective homologous cloning method for isolating novel miR172s from Phalaenopsis hybrida. PMID:25071407
Downregulation of miR-23a and miR-27a following experimental traumatic brain injury induces neuronal cell death through activation of proapoptotic Bcl-2 proteins. PMID:25057207
Paired-end analysis of transcription start sites in Arabidopsis reveals plant-specific promoter signatures. PMID:25035402
Detection of circulating parasite-derived microRNAs in filarial infections. PMID:25033073
Inhibition of breast cancer metastasis with microRNA-302a by downregulation of CXCR4 expression. PMID:25030358
Circulating microRNAs as biomarkers for inflammatory diseases. PMID:25019052
Using graphical adaptive lasso approach to construct transcription factor and microRNA's combinatorial regulatory network in breast cancer. PMID:25014375
Construction and analysis of microRNA-transcription factor regulation network in Arabidopsis. PMID:25014374
MicroRNAs expression profiles in cardiovascular diseases. PMID:25013816
Blood born miRNAs signatures that can serve as disease specific biomarkers are not significantly affected by overall fitness and exercise. PMID:25010680
Transient but not genetic loss of miR-451 is protective in the development of pulmonary arterial hypertension. PMID:25006399
High-throughput sequencing reveals small RNAs involved in ASGV infection. PMID:24998458
piRNAQuest: searching the piRNAome for silencers. PMID:24997126
AGO1 controls arabidopsis inflorescence architecture possibly by regulating TFL1 expression. PMID:24989784
MicroRNA-152 regulates DNA methyltransferase 1 and is involved in the development and lactation of mammary glands in dairy cows. PMID:24987964
Circulating cell-free cancer-testis MAGE-A RNA, BORIS RNA, let-7b and miR-202 in the blood of patients with breast cancer and benign breast diseases. PMID:24983365
Identification and validation of a novel microRNA-like molecule derived from a cytoplasmic RNA virus antigenome by bioinformatics and experimental approaches. PMID:24981144
Epigenetics and pancreatic cancer: pathophysiology and novel treatment aspects. PMID:24976721
Semi-supervised learning for potential human microRNA-disease associations inference. PMID:24975600
The microRNA-23b/27b/24 cluster promotes breast cancer lung metastasis by targeting metastasis-suppressive gene prosaposin. PMID:24966325
Genome-wide mapping of miRNAs expressed in embryonic stem cells and pluripotent stem cells generated by different reprogramming strategies. PMID:24942538
Frequent co-expression of miRNA-5p and -3p species and cross-targeting in induced pluripotent stem cells. PMID:24936146
Genome and transcriptome of the porcine whipworm Trichuris suis. PMID:24929829
Certain adenylated non-coding RNAs, including 5' leader sequences of primary microRNA transcripts, accumulate in mouse cells following depletion of the RNA helicase MTR4. PMID:24926684
Genetic variation in the 3'-UTR of CYP1A2, CYP2B6, CYP2D6, CYP3A4, NR1I2, and UGT2B7: potential effects on regulation by microRNA and pharmacogenomics relevance. PMID:24926315
Structured RNAs and synteny regions in the pig genome. PMID:24917120
Targeted resequencing of the microRNAome and 3'UTRome reveals functional germline DNA variants with altered prevalence in epithelial ovarian cancer. PMID:24909162
Regulatory and coding genome regions are enriched for trait associated variants in dairy and beef cattle. PMID:24903263
MicroRNA profiling as tool for in vitro developmental neurotoxicity testing: the case of sodium valproate. PMID:24896083
Identification of maize long non-coding RNAs responsive to drought stress. PMID:24892290
Reanalysis of the gene expression profile in chronic pancreatitis via bioinformatics methods. PMID:24886751
Ensemble-based classification approach for micro-RNA mining applied on diverse metagenomic sequences. PMID:24884968
Cooperative gene regulation by microRNA pairs and their identification using a computational workflow. PMID:24875477
Blood feeding and Plasmodium infection alters the miRNome of Anopheles stephensi. PMID:24866389
Pancreatic Cancer Database: an integrative resource for pancreatic cancer. PMID:24839966
Expression patterns of microRNA-218 and its potential functions by targeting CIP2A and BMI1 genes in melanoma. PMID:24839010
Exosomes in human semen carry a distinctive repertoire of small non-coding RNAs with potential regulatory functions. PMID:24838567
Transcriptional Gene Silencing (TGS) via the RNAi Machinery in HIV-1 Infections. PMID:24832229
Analyzing the microRNA Transcriptome in Plants Using Deep Sequencing Data. PMID:24832228
Diversity and expression of microRNAs in the filarial parasite, Brugia malayi. PMID:24824352
Wiring miRNAs to pathways: a topological approach to integrate miRNA and mRNA expression profiles. PMID:24803669
miR-191: an emerging player in disease biology. PMID:24795757
Integrating non-coding RNAs in JAK-STAT regulatory networks. PMID:24778925
Circular RNAs are depleted of polymorphisms at microRNA binding sites. PMID:24764460
Viral microRNA genomics and target validation. PMID:24763063
The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates. PMID:24755649
Identification of novel and conserved microRNAs related to drought stress in potato by deep sequencing. PMID:24748226
Transcriptional and posttranscriptional regulations of the HLA-G gene. PMID:24741620
MicroRNA-302b augments host defense to bacteria by regulating inflammatory responses via feedback to TLR/IRAK4 circuits. PMID:24717937
MicroRNA expression profile in the third- and fourth-stage larvae of Angiostrongylus cantonensis. PMID:24696273
Concordant changes of plasma and kidney microRNA in the early stages of acute kidney injury: time course in a mouse model of bilateral renal ischemia-reperfusion. PMID:24695114
MiR-203 is downregulated in laryngeal squamous cell carcinoma and can suppress proliferation and induce apoptosis of tumours. PMID:24682952
miRNA sensitivity to Drosha levels correlates with pre-miRNA secondary structure. PMID:24677349
Novel SNPs and INDEL polymorphisms in the 3'UTR of DGAT1 gene: in silico analyses and a possible association. PMID:24676595
Intestinal epithelial barrier disruption through altered mucosal microRNA expression in human immunodeficiency virus and simian immunodeficiency virus infections. PMID:24672033
A genome-wide perspective of miRNAome in response to high temperature, salinity and drought stresses in Brassica juncea (Czern) L. PMID:24671003
Assessing the impact of copy number variants on miRNA genes in autism by Monte Carlo simulation. PMID:24667286
Identification of microRNAs in the coral Stylophora pistillata. PMID:24658574
MiR-182 is up-regulated and targeting Cebpa in hepatocellular carcinoma. PMID:24653623
MiRNA expression profile for the human gastric antrum region using ultra-deep sequencing. PMID:24647245
Sources of individual variability: miRNAs that predispose to neuropathic pain identified using genome-wide sequencing. PMID:24642266
Profiling of estrogen-regulated microRNAs in breast cancer cells. PMID:24637950
MicroRNA-143 suppresses gastric cancer cell growth and induces apoptosis by targeting COX-2. PMID:24616567
Computational identification of miRNA and targets from expressed sequence tags of coffee (Coffea arabica). PMID:24596494
MicroRNAs regulate neuronal plasticity and are involved in pain mechanisms. PMID:24574967
AnaLysis of Expression on human chromosome 21, ALE-HSA21: a pilot integrated web resource. PMID:24573881
A genotoxic stress-responsive miRNA, miR-574-3p, delays cell growth by suppressing the enhancer of rudimentary homolog gene in vitro. PMID:24566139
MicroRNA identification using linear dimensionality reduction with explicit feature mapping. PMID:24564997
Dynamic reorganization of the AC16 cardiomyocyte transcriptome in response to TNFα signaling revealed by integrated genomic analyses. PMID:24564208
Potential Urinary miRNA Biomarker Candidates for the Accurate Detection of Prostate Cancer among Benign Prostatic Hyperplasia Patients. PMID:24563673
Inhibition of Smurf2 translation by miR-322/503 modulates TGF-β/Smad2 signaling and intestinal epithelial homeostasis. PMID:24554769
Comprehensive analysis of human cytomegalovirus microRNA expression during lytic and quiescent infection. PMID:24533100
Post-transcriptional regulation of human breast cancer cell proteome by unliganded estrogen receptor β via microRNAs. PMID:24525454
Acute pyelonephritis in renal allografts: a new role for microRNAs? PMID:24521778
Rapid identification of regulatory microRNAs by miTRAP (miRNA trapping by RNA in vitro affinity purification). PMID:24510096
Identification and differential expression of microRNAs in ovaries of laying and Broody geese (Anser cygnoides) by Solexa sequencing. PMID:24505332
MiR-21 is under control of STAT5 but is dispensable for mammary development and lactation. PMID:24497923
Integrated mRNA and microRNA transcriptome sequencing characterizes sequence variants and mRNA-microRNA regulatory network in nasopharyngeal carcinoma model systems. PMID:24490137
Identification and validation of miRNAs associated with the resistance of maize (Zea mays L.) to Exserohilum turcicum. PMID:24489881
Targeting miRNAs for pancreatic cancer therapy. PMID:24479803
The role of viral and host microRNAs in the Aujeszky's disease virus during the infection process. PMID:24475202
The Arabidopsis miR472-RDR6 silencing pathway modulates PAMP- and effector-triggered immunity through the post-transcriptional control of disease resistance genes. PMID:24453975
Robust global microRNA expression profiling using next-generation sequencing technologies. PMID:24445778
MiR-320a down-regulation mediates bladder carcinoma invasion by targeting ITGB3. PMID:24443232
The first draft of the pigeonpea genome sequence. PMID:24431589
OncomiRdbB: a comprehensive database of microRNAs and their targets in breast cancer. PMID:24428888
MicroRNA function and dysregulation in bone tumors: the evidence to date. PMID:24426787
MicroRNA-26a negatively regulates toll-like receptor 3 expression of rat macrophages and ameliorates pristane induced arthritis in rats. PMID:24423102
Next generation sequencing reveals regulation of distinct Aedes microRNAs during chikungunya virus development. PMID:24421911
Candidate luminal B breast cancer genes identified by genome, gene expression and DNA methylation profiling. PMID:24416132
DevMouse, the mouse developmental methylome database and analysis tools. PMID:24408217
miR-223 is a coordinator of breast cancer progression as revealed by bioinformatics predictions. PMID:24400121
Phospho-ΔNp63α/microRNA network modulates epigenetic regulatory enzymes in squamous cell carcinomas. PMID:24394434
Role of microRNAs in the trabecular meshwork. PMID:24383444
Genome-wide analyses of radioresistance-associated miRNA expression profile in nasopharyngeal carcinoma using next generation deep sequencing. PMID:24367666
Dissecting the chromatin interactome of microRNA genes. PMID:24357409
miR-133b, a muscle-specific microRNA, is a novel prognostic marker that participates in the progression of human colorectal cancer via regulation of CXCR4 expression. PMID:24330809
iMir: an integrated pipeline for high-throughput analysis of small non-coding RNA data obtained by smallRNA-Seq. PMID:24330401
An integrated systems genetics screen reveals the transcriptional structure of inherited predisposition to metastatic disease. PMID:24322557
MicroRNAs as tools to predict glucocorticoid response in inflammatory bowel diseases. PMID:24307788
Integrated molecular portrait of non-small cell lung cancers. PMID:24299561
A systematic experimental evaluation of microRNA markers of human bladder cancer. PMID:24298280
Alterations of MicroRNAs in Solid Cancers and Their Prognostic Value. PMID:24281118
Identifying common and specific microRNAs expressed in peripheral blood mononuclear cell of type 1, type 2, and gestational diabetes mellitus patients. PMID:24279768
The microRNAome of pregnancy: deciphering miRNA networks at the maternal-fetal interface. PMID:24278102
miRBase: annotating high confidence microRNAs using deep sequencing data. PMID:24275495
Deep sequencing of small RNA repertoires in mice reveals metabolic disorders-associated hepatic miRNAs. PMID:24260478
Individual and combined effects of DNA methylation and copy number alterations on miRNA expression in breast tumors. PMID:24257477
Synthetic pre-microRNAs reveal dual-strand activity of miR-34a on TNF-α. PMID:24249224
MicroRNAs in islet immunobiology and transplantation. PMID:24242759
Machine learning approaches distinguish multiple stress conditions using stress-responsive genes and identify candidate genes for broad resistance in rice. PMID:24235132
Cross-kingdom sequence similarities between human micro-RNAs and plant viruses. PMID:24228136
Overexpression of miR-196b and HOXA10 characterize a poor-prognosis gastric cancer subtype. PMID:24222951
MicroRNAs in myocardial ischemia: identifying new targets and tools for treating heart disease. New frontiers for miR-medicine. PMID:24218009
Identification of microRNAs in wool follicles during anagen, catagen, and telogen phases in Tibetan sheep. PMID:24204975
Genetic variant rs16430 6bp > 0bp at the microRNA-binding site in TYMS and risk of sporadic breast cancer risk in non-Hispanic white women aged ≤ 55 years. PMID:24166930
VAN: an R package for identifying biologically perturbed networks via differential variability analysis. PMID:24156242
Positively correlated miRNA-mRNA regulatory networks in mouse frontal cortex during early stages of alcohol dependence. PMID:24148570
Identification of novel microRNAs in primates by using the synteny information and small RNA deep sequencing data. PMID:24135875
Using functional signature ontology (FUSION) to identify mechanisms of action for natural products. PMID:24129700
Performance comparison of digital microRNA profiling technologies applied on human breast cancer cell lines. PMID:24116077
Walking the interactome to identify human miRNA-disease associations through the functional link between miRNA targets and disease genes. PMID:24103777
Perfluorooctane sulfonate disturbs Nanog expression through miR-490-3p in mouse embryonic stem cells. PMID:24098361
Collaborative regulation of development but independent control of metabolism by two epidermis-specific transcription factors in Caenorhabditis elegans. PMID:24097988
Regulation of MIR genes in response to abiotic stress in Hevea brasiliensis. PMID:24084713
Genome-wide profiling reveals stimulus-specific functions of p53 during differentiation and DNA damage of human embryonic stem cells. PMID:24078252
Proteome modulation in H9c2 cardiac cells by microRNAs miR-378 and miR-378. PMID:24068033
Small RNA profiling of Xenopus embryos reveals novel miRNAs and a new class of small RNAs derived from intronic transposable elements. PMID:24065776
Circulating cell-free microRNA as biomarkers for screening, diagnosis and monitoring of neurodegenerative diseases and other neurologic pathologies. PMID:24058335
MicroRNAs: history, biogenesis, and their evolving role in animal development and disease. PMID:24045890
miRNA-9 expression is upregulated in the spinal cord of G93A-SOD1 transgenic mice. PMID:24040447
Expansion of ruminant-specific microRNAs shapes target gene expression divergence between ruminant and non-ruminant species. PMID:24020371
Aflatoxin B1 negatively regulates Wnt/β-catenin signaling pathway through activating miR-33a. PMID:24015284
How microRNA and transcription factor co-regulatory networks affect osteosarcoma cell proliferation. PMID:24009496
Identification of differentially expressed genes in American cockroach ovaries and testes by suppression subtractive hybridization and the prediction of its miRNAs. PMID:23996145
Identification of microRNA-like RNAs in mycelial and yeast phases of the thermal dimorphic fungus Penicillium marneffei. PMID:23991243
MicroRNA profiling implicates the insulin-like growth factor pathway in bleomycin-induced pulmonary fibrosis in mice. PMID:23987664
The miRNA world of polyomaviruses. PMID:23984639
Small RNA-mediated regulation of host-pathogen interactions. PMID:23958954
MicroRNAs may solve the mystery of chronic hepatitis B virus infection. PMID:23946591
MicroRNA-31 predicts the presence of lymph node metastases and survival in patients with lung adenocarcinoma. PMID:23946296
MicroRNA expression differentiates squamous epithelium from Barrett's esophagus and esophageal cancer. PMID:23925817
ProteoMirExpress: inferring microRNA and protein-centered regulatory networks from high-throughput proteomic and mRNA expression data. PMID:23924514
Circulating microRNAs as novel biomarkers for the early diagnosis of acute coronary syndrome. PMID:23897095
Transcriptome-wide identification and characterization of microRNAs from castor bean (Ricinus communis L.). PMID:23894571
Differences in microRNA expression during tumor development in the transition and peripheral zones of the prostate. PMID:23890084
Detecting and comparing non-coding RNAs in the high-throughput era. PMID:23887659
Noncoding RNAs in DNA repair and genome integrity. PMID:23879367
Identification and characterization of microRNAs from Entamoeba histolytica HM1-IMSS. PMID:23874540
Systemically circulating viral and tumor-derived microRNAs in KSHV-associated malignancies. PMID:23874201
Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach. PMID:23865519
miR-1915 and miR-1225-5p regulate the expression of CD133, PAX2 and TLR2 in adult renal progenitor cells. PMID:23861881
Identification of microRNAs dysregulated in cellular senescence driven by endogenous genotoxic stress. PMID:23852002
Identification of miRNAs and miRNA-mediated regulatory pathways in Carica papaya. PMID:23851604
Small RNA pathways and diversity in model legumes: lessons from genomics. PMID:23847640
Influence of microRNA on the maintenance of human iron metabolism. PMID:23846788
lncRNome: a comprehensive knowledgebase of human long noncoding RNAs. PMID:23846593
TLR3-induced placental miR-210 down-regulates the STAT6/interleukin-4 pathway. PMID:23844087
MicroRNA-antagonism regulates breast cancer stemness and metastasis via TET-family-dependent chromatin remodeling. PMID:23830207
The oncogenic microRNA miR-22 targets the TET2 tumor suppressor to promote hematopoietic stem cell self-renewal and transformation. PMID:23827711
MicroRNA-gene expression network in murine liver during Schistosoma japonicum infection. PMID:23825609
Deep Sequencing the MicroRNA Transcriptome in Colorectal Cancer. PMID:23824282
Integrating sequence, expression and interaction data to determine condition-specific miRNA regulation. PMID:23813013
MiR-492 impairs the angiogenic potential of endothelial cells. PMID:23802567
Diversifying microRNA sequence and function. PMID:23800994
Distinctive profile of IsomiR expression and novel microRNAs in rat heart left ventricle. PMID:23799049
Estrogen regulation of microRNAs, target genes, and microRNA expression associated with vitellogenesis in the zebrafish. PMID:23767875
Differential expression of HPV16 L2 gene in cervical cancers harboring episomal HPV16 genomes: influence of synonymous and non-coding region variations. PMID:23762404
Genome-wide and species-wide in silico screening for intragenic MicroRNAs in human, mouse and chicken. PMID:23762306
A genome-wide integrative study of microRNAs in human liver. PMID:23758991
Genome Maps, a new generation genome browser. PMID:23748955
Computational prediction of the localization of microRNAs within their pre-miRNA. PMID:23748953
Molecular imaging strategies for in vivo tracking of microRNAs: a comprehensive review. PMID:23745564
PMTED: a plant microRNA target expression database. PMID:23725466
A new algorithm for integrated analysis of miRNA-mRNA interactions based on individual classification reveals insights into bladder cancer. PMID:23717626
Base Composition Characteristics of Mammalian miRNAs. PMID:23710337
Modulation of mGluR-dependent MAP1B translation and AMPA receptor endocytosis by microRNA miR-146a-5p. PMID:23699512
A deep analysis of the small non-coding RNA population in Schistosoma japonicum eggs. PMID:23691136
The microRNA-148/152 family: multi-faceted players. PMID:23683438
miR-Explore: Predicting MicroRNA Precursors by Class Grouping and Secondary Structure Positional Alignment. PMID:23645986
Regulation of cardiac microRNAs by cardiac microRNAs. PMID:23625950
Skeletal muscle calpain acts through nitric oxide and neural miRNAs to regulate acetylcholine release in motor nerve terminals. PMID:23616539
Fine tuning of auxin signaling by miRNAs. PMID:23572875
Identification of microRNA-mRNA functional interactions in UVB-induced senescence of human diploid fibroblasts. PMID:23557329
Exploring the RNA world in hematopoietic cells through the lens of RNA-binding proteins. PMID:23550653
Identification of new stress-induced microRNA and their targets in wheat using computational approach. PMID:23511197
Dissection of regulatory networks that are altered in disease via differential co-expression. PMID:23505361
MicroRNAs: an emerging science in cancer epigenetics. PMID:23497588
Inferring microRNA and transcription factor regulatory networks in heterogeneous data. PMID:23497388
miRNA-93 inhibits GLUT4 and is overexpressed in adipose tissue of polycystic ovary syndrome patients and women with insulin resistance. PMID:23493574
Increased sensitivity to chemotherapy induced by CpG-ODN treatment is mediated by microRNA modulation. PMID:23484053
MicroRNA-584 and the protein phosphatase and actin regulator 1 (PHACTR1), a new signaling route through which transforming growth factor-β Mediates the migration and actin dynamics of breast cancer cells. PMID:23479725
Concordant and discordant regulation of target genes by miR-31 and its isoforms. PMID:23472152
miR-199a-5p Is upregulated during fibrogenic response to tissue injury and mediates TGFbeta-induced lung fibroblast activation by targeting caveolin-1. PMID:23459460
MicroRNA variants increase the risk of HPV-associated squamous cell carcinoma of the oropharynx in never smokers. PMID:23457596
MicroRNAs and their putative targets in Brassica napus seed maturation. PMID:23448243
Identification of radiation-induced microRNA transcriptome by next-generation massively parallel sequencing. PMID:23447695
Large scale chromosomal mapping of human microRNA structural clusters. PMID:23444140
The RNA-binding region of human TRBP interacts with microRNA precursors through two independent domains. PMID:23435228
Searching the coding region for microRNA targets. PMID:23404894
An emerging role for microRNAs in sexually dimorphic neurobiological systems. PMID:23397171
Computational identification and characterization of putative miRNAs in Heliothis virescens. PMID:23390350
MicroRNA expression in alpha and beta cells of human pancreatic islets. PMID:23383059
miRNA expression profile analysis in kidney of different porcine breeds. PMID:23372853
A novel method for the normalization of microRNA RT-PCR data. PMID:23369279
Genome-wide analysis of miRNA signature differentially expressed in doxorubicin-resistant and parental human hepatocellular carcinoma cell lines. PMID:23359607
MicroRNAs and the genetic network in aging. PMID:23353823
The sequence structures of human microRNA molecules and their implications. PMID:23349828
MicroRNA paraffin-based studies in osteosarcoma reveal reproducible independent prognostic profiles at 14q32. PMID:23339462
High-throughput sequencing of microRNAs in peripheral blood mononuclear cells: identification of potential weight loss biomarkers. PMID:23335998
miRNA-transcription factor interactions: a combinatorial regulation of gene expression. PMID:23334784
Developmentally regulated expression and complex processing of barley pri-microRNAs. PMID:23324356
MicroRNA-31 activates the RAS pathway and functions as an oncogenic MicroRNA in human colorectal cancer by repressing RAS p21 GTPase activating protein 1 (RASA1). PMID:23322774
A pri-miR-218 variant and risk of cervical carcinoma in Chinese women. PMID:23320911
MicroRNA regulate immunological pathways in T-cells in immune thrombocytopenia (ITP). PMID:23303824
Cell-specific detection of miR-375 downregulation for predicting the prognosis of esophageal squamous cell carcinoma by miRNA in situ hybridization. PMID:23301089
MiRmat: mature microRNA sequence prediction. PMID:23300555
Identification of miRNA encoded by Jatropha curcas from EST and GSS. PMID:23299511
Therapeutic effects of microRNA-582-5p and -3p on the inhibition of bladder cancer progression. PMID:23295946
Identification of microRNAs in Helicoverpa armigera and Spodoptera litura based on deep sequencing and homology analysis. PMID:23289012
Inferring microRNA regulation of mRNA with partially ordered samples of paired expression data and exogenous prediction algorithms. PMID:23284698
Regulating the Regulators: microRNA and Asthma. PMID:23282474
MicroRNA 3' end nucleotide modification patterns and arm selection preference in liver tissues. PMID:23282006
C-mii: a tool for plant miRNA and target identification. PMID:23281648
A computational tool for the design of live attenuated virus vaccine based on microRNA-mediated gene silencing. PMID:23281624
Evidence for small RNAs homologous to effector-encoding genes and transposable elements in the oomycete Phytophthora infestans. PMID:23272103
Expression profiles of microRNAs from lactating and non-lactating bovine mammary glands and identification of miRNA related to lactation. PMID:23270386
Evolutionary relationships between miRNA genes and their activity. PMID:23259970
Complex role of microRNAs in HTLV-1 infections. PMID:23251140
The arthritis severity locus Cia5a regulates the expression of inflammatory mediators including Syk pathway genes and proteases in pristane-induced arthritis. PMID:23249408
MicroRNA: A Bridge from H. pylori Infection to Gastritis and Gastric Cancer Development. PMID:23248648
Identification of miR-30d as a novel prognostic maker of prostate cancer. PMID:23231923
microRNA expression profile of peripheral blood mononuclear cells of Klinefelter syndrome. PMID:23226734
Pre-microRNA variants predict HPV16-positive tumors and survival in patients with squamous cell carcinoma of the oropharynx. PMID:23219900
Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya. PMID:23216749
Expression of microRNAs in the NCI-60 cancer cell-lines. PMID:23209617
Tissue-specific silencing of Arabidopsis SU(VAR)3-9 HOMOLOG8 by miR171a. PMID:23204429
MicroRNAs in common human diseases. PMID:23200134
MiRGator v3.0: a microRNA portal for deep sequencing, expression profiling and mRNA targeting. PMID:23193297
MicroRNA-302 replacement therapy sensitizes breast cancer cells to ionizing radiation. PMID:23184229
SomamiR: a database for somatic mutations impacting microRNA function in cancer. PMID:23180788
Insect microRNAs: biogenesis, expression profiling and biological functions. PMID:23165178
MicroRNA Targets - How to predict? PMID:23139596
Computer-assisted annotation of murine Sertoli cell small RNA transcriptome. PMID:23136297
Antiangiogenic role of miR-361 in human umbilical vein endothelial cells: functional interaction with the peptide somatostatin. PMID:23128854
Anorectal atresia and variants at predicted regulatory sites in candidate genes. PMID:23127126
MicroRNA prediction using a fixed-order Markov model based on the secondary structure pattern. PMID:23118959
The signature of maternal rearing in the methylome in rhesus macaque prefrontal cortex and T cells. PMID:23115197
Evolution of the human-specific microRNA miR-941. PMID:23093182
miR-30d, miR-181a and miR-199a-5p cooperatively suppress the endoplasmic reticulum chaperone and signaling regulator GRP78 in cancer. PMID:23085757
Alternative mRNA fates identified in microRNA-associated transcriptome analysis. PMID:23083446
Cell-free Circulating miRNA Biomarkers in Cancer. PMID:23074383
Gene and genome parameters of mammalian liver circadian genes (LCGs). PMID:23071677
MicroRNAs and cardiac sarcoplasmic reticulum calcium ATPase-2 in human myocardial infarction: expression and bioinformatic analysis. PMID:23066896
miR-499 rs3746444 polymorphism is associated with cancer development among Asians and related to breast cancer susceptibility. PMID:23053947
Functional characterization of Drosophila microRNAs by a novel in vivo library. PMID:23051640
microRNAs targeting DEAD-box helicases are involved in salinity stress response in rice (Oryza sativa L.). PMID:23043463
Dietary phytochemicals and cancer prevention: Nrf2 signaling, epigenetics, and cell death mechanisms in blocking cancer initiation and progression. PMID:23041058
Modulation of immune responses following solid organ transplantation by microRNA. PMID:23036474
Birth and expression evolution of mammalian microRNA genes. PMID:23034410
MicroRNA expression profiles of whole blood in lung adenocarcinoma. PMID:23029380
Application of a novel strategy of engineering conditional alleles to a single exon gene, Sox2. PMID:23029233
A role for microRNA-155 modulation in the anti-HIV-1 effects of Toll-like receptor 3 stimulation in macrophages. PMID:23028330
Does base-pairing strength play a role in microRNA repression? PMID:23019592
Transcriptome and small RNA deep sequencing reveals deregulation of miRNA biogenesis in human glioma. PMID:23007860
MicroRNAs in inflammatory bowel disease--pathogenesis, diagnostics and therapeutics. PMID:23002331
Plasma microRNA biomarkers for detection of mild cognitive impairment. PMID:23001356
P-value-based regulatory motif discovery using positional weight matrices. PMID:22990209
Nuclear Factor kappa B is central to Marek's disease herpesvirus induced neoplastic transformation of CD30 expressing lymphocytes in-vivo. PMID:22979947
microRNA expression pattern and its alteration following celecoxib intervention in human colorectal cancer. PMID:22970014
SNPing cancer in the bud: microRNA and microRNA-target site polymorphisms as diagnostic and prognostic biomarkers in cancer. PMID:22964086
A new microRNA target prediction tool identifies a novel interaction of a putative miRNA with CCND2. PMID:22954617
Profiling microRNAs in lung tissue from pigs infected with Actinobacillus pleuropneumoniae. PMID:22953717
A translational study of urine miRNAs in acute myocardial infarction. PMID:22921780
Dysfunctions associated with methylation, microRNA expression and gene expression in lung cancer. PMID:22912875
A map of human microRNA variation uncovers unexpectedly high levels of variability. PMID:22906193
Micromanaging Iron Homeostasis: hypoxia-inducible micro-RNA-210 suppresses iron homeostasis-related proteins. PMID:22896707
A statin-regulated microRNA represses human c-Myc expression and function. PMID:22887866
miR-210 has an antiapoptotic effect in pulmonary artery smooth muscle cells during hypoxia. PMID:22886504
MicroRNAs shape the neuronal landscape. PMID:22884321
A novel dual-fluorescence strategy for functionally validating microRNA targets in 3' untranslated regions: regulation of the inward rectifier potassium channel K(ir)2.1 by miR-212. PMID:22880819
MicroRNAs and their target genes in gingival tissues. PMID:22879578
The microRNA mir-71 inhibits calcium signaling by targeting the TIR-1/Sarm1 adaptor protein to control stochastic L/R neuronal asymmetry in C. elegans. PMID:22876200
Treatment-independent miRNA signature in blood of Wilms tumor patients. PMID:22871070
AGO4 regulates entry into meiosis and influences silencing of sex chromosomes in the male mouse germline. PMID:22863743
High throughput sequencing reveals novel and abiotic stress-regulated microRNAs in the inflorescences of rice. PMID:22862743
Identification and characterization of argonaute protein, Ago2 and its associated small RNAs in Schistosoma japonicum. PMID:22860145
Comprehensive microRNA profiling in B-cells of human centenarians by massively parallel sequencing. PMID:22846614
Mixture models and wavelet transforms reveal high confidence RNA-protein interaction sites in MOV10 PAR-CLIP data. PMID:22844102
A novel vector-based method for exclusive overexpression of star-form microRNAs. PMID:22829954
'MicroRNA Targets', a new AthaMap web-tool for genome-wide identification of miRNA targets in Arabidopsis thaliana. PMID:22800758
Identification of soybean seed developmental stage-specific and tissue-specific miRNA targets by degradome sequencing. PMID:22799740
Dysregulation of uterine signaling pathways in progesterone receptor-Cre knockout of dicer. PMID:22798293
Chronic ethanol feeding enhances miR-21 induction during liver regeneration while inhibiting proliferation in rats. PMID:22790595
MicroRNA-338 regulates the axonal expression of multiple nuclear-encoded mitochondrial mRNAs encoding subunits of the oxidative phosphorylation machinery. PMID:22773120
Comparative analyses of H3K4 and H3K27 trimethylations between the mouse cerebrum and testis. PMID:22768982
Characterization of the rainbow trout egg microRNA transcriptome. PMID:22761856
Non-coding RNAs in the plant response to abiotic stress. PMID:22761008
MicroRNA from tuberculosis RNA: A bioinformatics study. PMID:22754669
Disease-linked microRNA-21 exhibits drastically reduced mRNA binding and silencing activity in healthy mouse liver. PMID:22740638
Differentiation MicroRNAs Affect Stemness Status of USSCs. PMID:22737411
Integrated analysis of microRNA expression and mRNA transcriptome in lungs of avian influenza virus infected broilers. PMID:22726614
Lack of association between miR-149 C>T polymorphism and cancer susceptibility: a meta-analysis based on 4,677 cases and 4,830 controls. PMID:22714913
Global Approaches to the Role of miRNAs in Drug-Induced Changes in Gene Expression. PMID:22707957
VARIANT: Command Line, Web service and Web interface for fast and accurate functional characterization of variants found by Next-Generation Sequencing. PMID:22693211
Inferring the regulatory network behind a gene expression experiment. PMID:22693210
Low levels of cell-free circulating miR-361-3p and miR-625* as blood-based markers for discriminating malignant from benign lung tumors. PMID:22675530
MicroRNAs, wild-type and mutant p53: more questions than answers. PMID:22664917
MicroRNA-mediated regulation of gene expression is affected by disease-associated SNPs within the 3'-UTR via altered RNA structure. PMID:22664914
Identification, expression and target gene analyses of Micrornas in Spodoptera litura. PMID:22662202
Genetic polymorphisms in MicroRNA-related genes as predictors of clinical outcomes in colorectal adenocarcinoma patients. PMID:22661538
Evidence for premature aging due to oxidative stress in iPSCs from Cockayne syndrome. PMID:22661500
Genetic architecture of microRNA expression: implications for the transcriptome and complex traits. PMID:22658545
Inflammation-Mediated Regulation of MicroRNA Expression in Transplanted Pancreatic Islets. PMID:22655170
MicroRNAs are universal regulators of differentiation, activation, and polarization of microglia and macrophages in normal and diseased CNS. PMID:22653784
A-to-I editing of microRNAs in the mammalian brain increases during development. PMID:22645261
The expression and clinical significance of circulating microRNA-21 in serum of five solid tumors. PMID:22638884
Cardiac-specific inducible and conditional gene targeting in mice. PMID:22628574
miR-27b targets KSRP to coordinate TLR4-mediated epithelial defense against Cryptosporidium parvum infection. PMID:22615562
Target mimics: an embedded layer of microRNA-involved gene regulatory networks in plants. PMID:22613869
Relax with CouchDB--into the non-relational DBMS era of bioinformatics. PMID:22609849
RCDB: Renal Cancer Gene Database. PMID:22608002
MicroRNA regulation of lipid metabolism. PMID:22607769
Cis-acting polymorphisms affect complex traits through modifications of microRNA regulation pathways. PMID:22606281
rs4919510 in hsa-mir-608 is associated with outcome but not risk of colorectal cancer. PMID:22606253
Subgenomic analysis of microRNAs in polyploid wheat. PMID:22592659
Combined deep microRNA and mRNA sequencing identifies protective transcriptomal signature of enhanced PI3Kα signaling in cardiac hypertrophy. PMID:22580345
Potential pitfalls in microRNA profiling. PMID:22566380
Experimental verification of a predicted intronic microRNA in human NGFR gene with a potential pro-apoptotic function. PMID:22558167
Integration of MicroRNA databases to study MicroRNAs associated with multiple sclerosis. PMID:22549745
Characterization of host microRNAs that respond to DNA virus infection in a crustacean. PMID:22545795
In-silico and in-vivo analyses of EST databases unveil conserved miRNAs from Carthamus tinctorius and Cynara cardunculus. PMID:22536958
Downregulation of miR-31, miR-155, and miR-564 in chronic myeloid leukemia cells. PMID:22511990
MicroRNA profiling: approaches and considerations. PMID:22510765
Ssa miRNAs DB: Online repository of in silico predicted miRNAs in Salmo salar. PMID:22493538
Bidirectional regulation between WDR83 and its natural antisense transcript DHPS in gastric cancer. PMID:22491477
Integrative analysis in oral squamous cell carcinoma reveals DNA copy number-associated miRNAs dysregulating target genes. PMID:22470160
MicroRNA-125b down-regulation mediates endometrial cancer invasion by targeting ERBB2. PMID:22460089
Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets. PMID:22442676
miR-181a post-transcriptionally downregulates oncogenic RalA and contributes to growth inhibition and apoptosis in chronic myelogenous leukemia (CML). PMID:22442671
Integrated sequence-structure motifs suffice to identify microRNA precursors. PMID:22438883
Temporal- and strain-specific host microRNA molecular signatures associated with swine-origin H1N1 and avian-origin H7N7 influenza A virus infection. PMID:22438559
AMPKα modulation in cancer progression: multilayer integrative analysis of the whole transcriptome in Asian gastric cancer. PMID:22434430
Investigation of the interaction between the MIR-503 and CD40 genes in irradiated U937 cells. PMID:22429276
OLFML3 expression is decreased during prenatal muscle development and regulated by microRNA-155 in pigs. PMID:22419891
Recent updates on the role of microRNAs in prostate cancer. PMID:22417299
Identification of miRNAs in sorghum by using bioinformatics approach. PMID:22415044
High-throughput luciferase reporter assay for small-molecule inhibitors of microRNA function. PMID:22412086
Transcriptome-wide analysis of small RNA expression in early zebrafish development. PMID:22408181
Genome-wide analysis of microRNAs in rubber tree (Hevea brasiliensis L.) using high-throughput sequencing. PMID:22407387
Bioinformatic Resources of microRNA Sequences, Gene Targets, and Genetic Variation. PMID:22403585
p53 regulates cell cycle and microRNAs to promote differentiation of human embryonic stem cells. PMID:22389628
Long-term, efficient inhibition of microRNA function in mice using rAAV vectors. PMID:22388288
Optimal use of conservation and accessibility filters in microRNA target prediction. PMID:22384176
MicroRNAs targeting oncogenes are down-regulated in pancreatic malignant transformation from benign tumors. PMID:22384141
MicroRNA-deficient NK cells exhibit decreased survival but enhanced function. PMID:22379033
miRNA arm selection and isomiR distribution in gastric cancer. PMID:22369582
Expression profile of small RNAs in Acacia mangium secondary xylem tissue with contrasting lignin content - potential regulatory sequences in monolignol biosynthetic pathway. PMID:22369296
Microbial pattern recognition causes distinct functional micro-RNA signatures in primary human monocytes. PMID:22363568
Abnormal miR-148b expression promotes aberrant glycosylation of IgA1 in IgA nephropathy. PMID:22362909
Drug-target network in myocardial infarction reveals multiple side effects of unrelated drugs. PMID:22355571
Computational analysis of mRNA expression profiles identifies microRNA-29a/c as predictor of colorectal cancer early recurrence. PMID:22348113
Identification of mouse serum miRNA endogenous references by global gene expression profiles. PMID:22348064
Computational identification of miRNAs in medicinal plant Senecio vulgaris (Groundsel). PMID:22347777
Genome sequencing and analysis of the Tasmanian devil and its transmissible cancer. PMID:22341448
Identification of novel microRNAs in Hevea brasiliensis and computational prediction of their targets. PMID:22330773
Regulation of microRNA expression in the heart by the ATF6 branch of the ER stress response. PMID:22326432
Tumor-suppressive microRNA silenced by tumor-specific DNA hypermethylation in cancer cells. PMID:22320679
Identification of microRNA-like RNAs in a plant pathogenic fungus Sclerotinia sclerotiorum by high-throughput sequencing. PMID:22314800
Bioinformatics tools and novel challenges in long non-coding RNAs (lncRNAs) functional analysis. PMID:22312241
Predicting kissing interactions in microRNA-target complex and assessment of microRNA activity. PMID:22307238
Catalog of microRNA seed polymorphisms in vertebrates. PMID:22303453
Thousands of Novel Transcripts Identified in Mouse Cerebrum, Testis, and ES Cells Based on ribo-minus RNA Sequencing. PMID:22303387
MIRNA-DISTILLER: A Stand-Alone Application to Compile microRNA Data from Databases. PMID:22303335
Systematic Curation of miRBase Annotation Using Integrated Small RNA High-Throughput Sequencing Data for C. elegans and Drosophila. PMID:22303321
Computational identification of sweet wormwood (Artemisia annua) microRNA and their mRNA targets. PMID:22289476
Deep-sequencing of endothelial cells exposed to hypoxia reveals the complexity of known and novel microRNAs. PMID:22282338
miRdSNP: a database of disease-associated SNPs and microRNA target sites on 3'UTRs of human genes. PMID:22276777
Transcriptome and proteome research in veterinary science: what is possible and what questions can be asked? PMID:22262952
Identification of miRNA-103 in the cellular fraction of human peripheral blood as a potential biomarker for malignant mesothelioma--a pilot study. PMID:22253921
Modeling of miRNA and drug action in the EGFR signaling pathway. PMID:22253908
Host gene targets for novel influenza therapies elucidated by high-throughput RNA interference screens. PMID:22247330
Clinical significance of miR-155 expression in breast cancer and effects of miR-155 ASO on cell viability and apoptosis. PMID:22245916
Strand-specific miR-28-5p and miR-28-3p have distinct effects in colorectal cancer cells. PMID:22240480
In silico and in vitro identification of microRNAs that regulate hepatic nuclear factor 4α expression. PMID:22232426
Promising Candidate Urinary MicroRNA Biomarkers for the Early Detection of Hepatocellular Carcinoma among High-Risk Hepatitis C Virus Egyptian Patients. PMID:22211142
The role of microRNAs in glioma initiation and progression. PMID:22201769
MicroRNAs and their roles in osteoclast differentiation. PMID:22198753
Expression profiling of synaptic microRNAs from the adult rat brain identifies regional differences and seizure-induced dynamic modulation. PMID:22197703
Expression of mir-21 and mir-143 in cervical specimens ranging from histologically normal through to invasive cervical cancer. PMID:22194833
MicroRNA miR-451 downregulates the PI3K/AKT pathway through CAB39 in human glioma. PMID:22179124
Regulatory coordination of clustered microRNAs based on microRNA-transcription factor regulatory network. PMID:22176772
miR-210: the master hypoxamir. PMID:22171547
MicroRNA-driven developmental remodeling in the brain distinguishes humans from other primates. PMID:22162950
Computational methods for the identification of microRNA targets. PMID:22162940
miR-124 acts through CoREST to control onset of Sema3A sensitivity in navigating retinal growth cones. PMID:22138647
Transcription factor binding sites are highly enriched within microRNA precursor sequences. PMID:22136256
Microarray-based transcriptomic analysis of differences between long-term gregarious and solitarious desert locusts. PMID:22132225
Genome-wide identification and annotation of HIF-1α binding sites in two cell lines using massively parallel sequencing. PMID:22132063
Micro-RNAs as diagnostic or prognostic markers in human epithelial malignancies. PMID:22128797
Characterization of NOL7 gene point mutations, promoter methylation, and protein expression in cervical cancer. PMID:22123719
Gene-centered regulatory network mapping. PMID:22118281
MicroRNAs 296 and 298 are imprinted and part of the GNAS/Gnas cluster and miR-296 targets IKBKE and Tmed9. PMID:22114321
The chromosome 2p21 region harbors a complex genetic architecture for association with risk for renal cell carcinoma. PMID:22113997
Identification and characterization of microRNAs from peanut (Arachis hypogaea L.) by high-throughput sequencing. PMID:22110666
Viral microRNA targetome of KSHV-infected primary effusion lymphoma cell lines. PMID:22100165
Changes of microRNAs-192, 196a and 203 correlate with Barrett's esophagus diagnosis and its progression compared to normal healthy individuals. PMID:22094011
Network analysis of microRNAs and their regulation in human ovarian cancer. PMID:22050994
Synergistic post-transcriptional regulation of the Cystic Fibrosis Transmembrane conductance Regulator (CFTR) by miR-101 and miR-494 specific binding. PMID:22028919
MiR-221 influences effector functions and actin cytoskeleton in mast cells. PMID:22022537
MicroRNA expression and regulation in human, chimpanzee, and macaque brains. PMID:22022286
MicroRNA-31 regulated by the extracellular regulated kinase is involved in vascular smooth muscle cell growth via large tumor suppressor homolog 2. PMID:22020941
Exploration of small non coding RNAs in wheat (Triticum aestivum L.). PMID:22009635
MicroRNA and AU-rich element regulation of prostaglandin synthesis. PMID:22005950
Nuclear accumulation of an uncapped RNA produced by Drosha cleavage of a transcript encoding miR-10b and HOXD4. PMID:21991333
Identifying targets of human micrornas with the LightSwitch Luciferase Assay System using 3'UTR-reporter constructs and a microRNA mimic in adherent cells. PMID:21988797
G-DOC: a systems medicine platform for personalized oncology. PMID:21969811
miR-25 targets TNF-related apoptosis inducing ligand (TRAIL) death receptor-4 and promotes apoptosis resistance in cholangiocarcinoma. PMID:21953056
A functional variant at the miR-184 binding site in TNFAIP2 and risk of squamous cell carcinoma of the head and neck. PMID:21934093
A primate herpesvirus uses the integrator complex to generate viral microRNAs. PMID:21925386
Identification and comparative analysis of drought-associated microRNAs in two cowpea genotypes. PMID:21923928
Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle. PMID:21912509
Testing hypotheses on the rate of molecular evolution in relation to gene expression using microRNAs. PMID:21911382
miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. PMID:21911355
New molecular insights into inflammatory bowel disease-induced diarrhea. PMID:21910579
Genomic sequence around butterfly wing development genes: annotation and comparative analysis. PMID:21909358
MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms are the sister group of Arthropoda. PMID:21896763
Current approaches to micro-RNA analysis and target gene prediction. PMID:21892624
Functional similarity analysis of human virus-encoded miRNAs. PMID:21884632
A plasma microRNA signature of acute lentiviral infection: biomarkers of central nervous system disease. PMID:21857495
Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development. PMID:21854559
PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data. PMID:21851591
Profiles of small non-coding RNAs in Schistosoma japonicum during development. PMID:21829742
A resource of vectors and ES cells for targeted deletion of microRNAs in mice. PMID:21822254
MicroRNA regulation by RNA-binding proteins and its implications for cancer. PMID:21822212
MicroRNA-32 upregulation by 1,25-dihydroxyvitamin D3 in human myeloid leukemia cells leads to Bim targeting and inhibition of AraC-induced apoptosis. PMID:21816906
Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity. PMID:21813625
Evidence for the complexity of microRNA-mediated regulation in ovarian cancer: a systems approach. PMID:21811625
MicroRNA-155 promotes resolution of hypoxia-inducible factor 1alpha activity during prolonged hypoxia. PMID:21807897
Deep sequencing of small RNAs from human skin reveals major alterations in the psoriasis miRNAome. PMID:21807764
Expression and rhythmic modulation of circulating microRNAs targeting the clock gene Bmal1 in mice. PMID:21799909
MicroRNA expression and regulation in human ovarian carcinoma cells by luteinizing hormone. PMID:21765906
Information encoded in a network of inflammation proteins predicts clinical outcome after myocardial infarction. PMID:21756327
Global microRNA expression profiling identifies MiR-210 associated with tumor proliferation, invasion and poor clinical outcome in breast cancer. PMID:21738599
miRNA studies in in vitro and in vivo activated hepatic stellate cells. PMID:21734783
MicroRNA expression profiling reveals miRNA families regulating specific biological pathways in mouse frontal cortex and hippocampus. PMID:21731767
microRNA-Seq reveals cocaine-regulated expression of striatal microRNAs. PMID:21708909
Overexpression of microRNAs from the miR-17-92 paralog clusters in AIDS-related non-Hodgkin's lymphomas. PMID:21698185
Impact of cellular miRNAs on circulating miRNA biomarker signatures. PMID:21698099
Nuclear outsourcing of RNA interference components to human mitochondria. PMID:21695135
Computational prediction of intronic microRNA targets using host gene expression reveals novel regulatory mechanisms. PMID:21694770
Down-regulated miRNA-214 induces a cell cycle G1 arrest in gastric cancer cells by up-regulating the PTEN protein. PMID:21688200
An X chromosome microRNA cluster in the marsupial species Monodelphis domestica. PMID:21685406
Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa. PMID:21679406
The characterisation of piRNA-related 19mers in the mouse. PMID:21672259
Identification of novel soybean microRNAs involved in abiotic and biotic stresses. PMID:21663675
Microarray analysis of differentially expressed microRNAs in non-regressed and regressed bovine corpus luteum tissue; microRNA-378 may suppress luteal cell apoptosis by targeting the interferon gamma receptor 1 gene. PMID:21655975
Estrogen-regulated genes in rat testes and their relationship to recovery of spermatogenesis after irradiation. PMID:21653891
MicroRNAs in the human pituitary. PMID:21647843
Loss of the miR-21 allele elevates the expression of its target genes and reduces tumorigenesis. PMID:21646541
MicroRNAs in brain development and degeneration. PMID:21643950
Computational analysis of drought stress-associated miRNAs and miRNA co-regulation network in Physcomitrella patens. PMID:21641561
Pre-microRNA and mature microRNA in human mitochondria. PMID:21637849
Nrf2-dependent gene expression is affected by the proatherogenic apoE4 genotype-studies in targeted gene replacement mice. PMID:21626108
A miRNA expression signature that separates between normal and malignant prostate tissues. PMID:21619623
Characterizing the role of miRNAs within gene regulatory networks using integrative genomics techniques. PMID:21613979
GiSAO.db: a database for ageing research. PMID:21609420
Modeling the asymmetric evolution of a mouse and rat-specific microRNA gene cluster intron 10 of the Sfmbt2 gene. PMID:21605348
Impact of microRNA in normal and pathological respiratory epithelia. PMID:21594785
Transcriptional regulation by miRNA mimics that target sequences downstream of gene termini. PMID:21589992
Evolution of MIR159/319 microRNA genes and their post-transcriptional regulatory link to siRNA pathways. PMID:21569383
MicroRNAs in the midst of myeloid signal transduction. PMID:21567394
Domestication of transposable elements into MicroRNA genes in plants. PMID:21559273
Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis. PMID:21558790
In silico analysis of combinatorial microRNA activity reveals target genes and pathways associated with breast cancer metastasis. PMID:21552493
Widespread expression of piRNA-like molecules in somatic tissues. PMID:21546553
MicroRNA: Biogenesis, Function and Role in Cancer. PMID:21532838
Ultrasensitive microarray detection of short RNA sequences with enzymatically modified nanoparticles and surface plasmon resonance imaging measurements. PMID:21524060
A sequence variation in 3'UTR of CYP21A2 gene correlates with a mild form of congenital adrenal hyperplasia. PMID:21521936
miR-365, a novel negative regulator of interleukin-6 gene expression, is cooperatively regulated by Sp1 and NF-kappaB. PMID:21518763
MiRPara: a SVM-based software tool for prediction of most probable microRNA coding regions in genome scale sequences. PMID:21504621
Copy number variation of microRNA genes in the human genome. PMID:21486463
miRNA Biomarkers in Breast Cancer Detection and Management. PMID:21479130
Serum response factor-dependent MicroRNAs regulate gastrointestinal smooth muscle cell phenotypes. PMID:21473868
In silico identification of microRNAs predicted to regulate the drug metabolizing cytochrome P450 genes. PMID:21457141
Computational detection and functional analysis of human tissue-specific A-to-I RNA editing. PMID:21448465
MicroRNA genes derived from repetitive elements and expanded by segmental duplication events in mammalian genomes. PMID:21436881
Functional microRNA involved in endometriosis. PMID:21436257
Transcriptional gene silencing in mammalian cells by miRNA mimics that target gene promoters. PMID:21427083
MicroRNAs in inflammatory bowel disease. PMID:21425211
Differential microRNA expression in experimental cerebral and noncerebral malaria. PMID:21422175
Integrating microRNAs into a system biology approach to acute lung injury. PMID:21420028
MicroRNA, a new paradigm for understanding immunoregulation, inflammation, and autoimmune diseases. PMID:21420027
Identification and characterization of 63 MicroRNAs in the Asian seabass Lates calcarifer. PMID:21412421
A CHOP-regulated microRNA controls rhodopsin expression. PMID:21402790
Two-tiered approach identifies a network of cancer and liver disease-related genes regulated by miR-122. PMID:21402708
Clinical applications of miRNAs in cardiac remodeling and heart failure. PMID:21399714
Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering. PMID:21392545
Quantitative prediction of miRNA-mRNA interaction based on equilibrium concentrations. PMID:21390282
Identification of microRNA-mRNA modules using microarray data. PMID:21375780
Expression of microRNA and their gene targets are dysregulated in preinvasive breast cancer. PMID:21375733
MIR@NT@N: a framework integrating transcription factors, microRNAs and their targets to identify sub-network motifs in a meta-regulation network model. PMID:21375730
Temporal differences in microRNA expression patterns in astrocytes and neurons after ischemic injury. PMID:21373187
The KRAS-Variant Genetic Test As a Marker of Increased Risk of Ovarian Cancer. PMID:21364863
NAViGaTing the micronome--using multiple microRNA prediction databases to identify signalling pathway-associated microRNAs. PMID:21364759
MicroRNA-183 family expression in hair cell development and requirement of microRNAs for hair cell maintenance and survival. PMID:21360794
Repression of VEGFA by CA-rich element-binding microRNAs is modulated by hnRNP L. PMID:21343907
The conformation of microRNA seed regions in native microRNPs is prearranged for presentation to mRNA targets. PMID:21335607
Benefits of random-priming: exhaustive survey of a cDNA library from lung tissue of a SARS patient. PMID:21328370
miR-101 is down-regulated in glioblastoma resulting in EZH2-induced proliferation, migration, and angiogenesis. PMID:21321380
MicroRNA hsa-miR-613 targets the human LXRα gene and mediates a feedback loop of LXRα autoregulation. PMID:21310851
Two-step cleavage of hairpin RNA with 5' overhangs by human DICER. PMID:21306637
Detection and removal of biases in the analysis of next-generation sequencing reads. PMID:21304912
miR-155, a Modulator of FOXO3a Protein Expression, Is Underexpressed and Cannot Be Upregulated by Stimulation of HOZOT, a Line of Multifunctional Treg. PMID:21304824
Down-regulation of miR-101 in endothelial cells promotes blood vessel formation through reduced repression of EZH2. PMID:21297974
Observation of miRNA gene expression in zebrafish embryos by in situ hybridization to microRNA primary transcripts. PMID:21288128
Tumor suppressor p53 meets microRNAs. PMID:21278451
Analysis of positional candidate genes in the AAA1 susceptibility locus for abdominal aortic aneurysms on chromosome 19. PMID:21247474
Breast cancer resistance protein BCRP/ABCG2 regulatory microRNAs (hsa-miR-328, -519c and -520h) and their differential expression in stem-like ABCG2+ cancer cells. PMID:21219875
Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing. PMID:21219599
MicroRNAs and colon and rectal cancer: differential expression by tumor location and subtype. PMID:21213373
MicroRNA-148b is frequently down-regulated in gastric cancer and acts as a tumor suppressor by inhibiting cell proliferation. PMID:21205300
Interferon-γ production by neutrophils during bacterial pneumonia in mice. PMID:21169470
The emerging role of microRNAs in drug responses. PMID:21154161
RepTar: a database of predicted cellular targets of host and viral miRNAs. PMID:21149264
Discovery and characterization of medaka miRNA genes by next generation sequencing platform. PMID:21143817
RNA editing of nuclear transcripts in Arabidopsis thaliana. PMID:21143795
Murine hepatic miRNAs expression and regulation of gene expression in diet-induced obese mice. PMID:21120623
miR-301a as an NF-κB activator in pancreatic cancer cells. PMID:21113131
Implications of the polymorphism of HLA-G on its function, regulation, evolution and disease association. PMID:21107637
Heuristic RNA pseudoknot prediction including intramolecular kissing hairpins. PMID:21098139
Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane. PMID:21092324
Knockdown of microRNA-21 inhibits proliferation and increases cell death by targeting programmed cell death 4 (PDCD4) in pancreatic ductal adenocarcinoma. PMID:21088996
miR-200b targets Ets-1 and is down-regulated by hypoxia to induce angiogenic response of endothelial cells. PMID:21081489
Zebrafish microRNA-126 determines hematopoietic cell fate through c-Myb. PMID:21079614
RNA polymerase II binding patterns reveal genomic regions involved in microRNA gene regulation. PMID:21072189
miRNA expression patterns of Triticum dicoccoides in response to shock drought stress. PMID:21069383
Origin and evolution of a placental-specific microRNA family in the human genome. PMID:21067568
Ultraconserved cDNA segments in the human transcriptome exhibit resistance to folding and implicate function in translation and alternative splicing. PMID:21062826
Combinatorial regulation of transcription factors and microRNAs. PMID:21059252
A recombination hotspot leads to sequence variability within a novel gene (AK005651) and contributes to type 1 diabetes susceptibility. PMID:21051460
The prognostic and functional role of microRNAs in acute myeloid leukemia. PMID:21045193
MicroRNA-210 regulates cancer cell proliferation through targeting fibroblast growth factor receptor-like 1 (FGFRL1). PMID:21044961
Analysis of A to I editing of miRNA in macrophages exposed to Salmonella. PMID:21037424
NcRNA-microchip analysis: a novel approach to identify differential expression of noncoding RNAs. PMID:21037422
miRBase: integrating microRNA annotation and deep-sequencing data. PMID:21037258
Modified least-variant set normalization for miRNA microarray. PMID:20980676
Correlation between sequence conservation and structural thermodynamics of microRNA precursors from human, mouse, and chicken genomes. PMID:20977776
Computational discovery of miR-TF regulatory modules in human genome. PMID:20975901
Hypoxia-induced microRNA-424 expression in human endothelial cells regulates HIF-α isoforms and promotes angiogenesis. PMID:20972335
MicroRNA expression in ACTH-producing pituitary tumors: up-regulation of microRNA-122 and -493 in pituitary carcinomas. PMID:20960104
Ultra-deep sequencing reveals the microRNA expression pattern of the human stomach. PMID:20949028
A framework for automated enrichment of functionally significant inverted repeats in whole genomes. PMID:20946604
Methylation of the candidate biomarker TCF21 is very frequent across a spectrum of early-stage nonsmall cell lung cancers. PMID:20945327
Global expression profiling of rice microRNAs by one-tube stem-loop reverse transcription quantitative PCR revealed important roles of microRNAs in abiotic stress responses. PMID:20941508
Negative regulation of the tumor suppressor p53 gene by microRNAs. PMID:20935678
Next-generation sequencing identifies the natural killer cell microRNA transcriptome. PMID:20935160
MiR-339-5p inhibits breast cancer cell migration and invasion in vitro and may be a potential biomarker for breast cancer prognosis. PMID:20932331
A potential role for intragenic miRNAs on their hosts' interactome. PMID:20920310
Gene networks for nitrogen sensing, signaling, and response in Arabidopsis thaliana. PMID:20890965
Global microRNA characterization reveals that miR-103 is involved in IGF-1 stimulated mouse intestinal cell proliferation. PMID:20886090
Human traumatic brain injury alters plasma microRNA levels. PMID:20883153
Complete characterization of the microRNAome in a patient with acute myeloid leukemia. PMID:20876853
Complexity of the microRNA repertoire revealed by next-generation sequencing. PMID:20876832
Climbing fibers induce microRNA transcription in cerebellar Purkinje cells. PMID:20875844
NOVOMIR: De Novo Prediction of MicroRNA-Coding Regions in a Single Plant-Genome. PMID:20871826
MicroRNA signature of the human developing pancreas. PMID:20860821
Dysregulated miR-183 inhibits migration in breast cancer cells. PMID:20858276
Tobacco microRNAs prediction and their expression infected with Cucumber mosaic virus and Potato virus X. PMID:20853150
Human box C/D snoRNAs with miRNA like functions: expanding the range of regulatory RNAs. PMID:20846955
MicroRNA in ischemic stroke etiology and pathology. PMID:20841499
Overlapping codes within protein-coding sequences. PMID:20841429
MicroRNA-218 is deleted and downregulated in lung squamous cell carcinoma. PMID:20838434
Programmed cell death 4 loss increases tumor cell invasion and is regulated by miR-21 in oral squamous cell carcinoma. PMID:20831814
MicroRNAs as biomarkers in colorectal cancer. PMID:20829435
Cycling exercise affects the expression of apoptosis-associated microRNAs after spinal cord injury in rats. PMID:20816819
Sequencing bias: comparison of different protocols of microRNA library construction. PMID:20815927
Profiling and functional analyses of microRNAs and their target gene products in human uterine leiomyomas. PMID:20808773
Efficient use of accessibility in microRNA target prediction. PMID:20805242
ncRNAimprint: a comprehensive database of mammalian imprinted noncoding RNAs. PMID:20801769
Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs. PMID:20733160
CircuitsDB: a database of mixed microRNA/transcription factor feed-forward regulatory circuits in human and mouse. PMID:20731828
Discordant expression of miR-103/7 and pantothenate kinase host genes in mouse. PMID:20729113
Small RNAs control sodium channel expression, nociceptor excitability, and pain thresholds. PMID:20702715
Human SP-A1 (SFTPA1) variant-specific 3' UTRs and poly(A) tail differentially affect the in vitro translation of a reporter gene. PMID:20693318
MicroRNA-21 plays a role in hypoxia-mediated pulmonary artery smooth muscle cell proliferation and migration. PMID:20693317
Characterisation of microRNAs from apple (Malus domestica 'Royal Gala') vascular tissue and phloem sap. PMID:20682080
MicroRNA-132-mediated loss of p120RasGAP activates the endothelium to facilitate pathological angiogenesis. PMID:20676106
MicroRNA expression profiling in the prefrontal cortex of individuals affected with schizophrenia and bipolar disorders. PMID:20675101
Signal transducers and activators of transcription-1 (STAT1) regulates microRNA transcription in interferon gamma-stimulated HeLa cells. PMID:20668688
Global transcriptome profiling of wild soybean (Glycine soja) roots under NaHCO3 treatment. PMID:20653984
MicroRNA, mRNA, and protein expression link development and aging in human and macaque brain. PMID:20647238
miRNA in pluripotent stem cells. PMID:20632858
Accurate molecular classification of renal tumors using microRNA expression. PMID:20595629
Comprehensive survey of human brain microRNA by deep sequencing. PMID:20591156
A viral microRNA down-regulates multiple cell cycle genes through mRNA 5'UTRs. PMID:20585629
Viral miRNAs: tools for immune evasion. PMID:20580307
Large-scale expression analysis reveals distinct microRNA profiles at different stages of human neurodevelopment. PMID:20559549
Genetic variants in selected pre-microRNA genes and the risk of squamous cell carcinoma of the head and neck. PMID:20549817
Negative regulation of tumor suppressor p53 by microRNA miR-504. PMID:20542001
MiR-RACE, a new efficient approach to determine the precise sequences of computationally identified trifoliate orange (Poncirus trifoliata) microRNAs. PMID:20539756
Strain screen and haplotype association mapping of wheel running in inbred mouse strains. PMID:20538847
High-throughput miRNA profiling of human melanoma blood samples. PMID:20529253
miR-1226 targets expression of the mucin 1 oncoprotein and induces cell death. PMID:20514397
Genetic variation in microRNA networks: the implications for cancer research. PMID:20495573
Detecting microRNA activity from gene expression data. PMID:20482775
Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling. PMID:20478823
Viruses, microRNAs, and host interactions. PMID:20477536
Coordinated modular functionality and prognostic potential of a heart failure biomarker-driven interaction network. PMID:20462429
Altered expression of MiR-148a and MiR-152 in gastrointestinal cancers and its clinical significance. PMID:20422307
The conserved miR-51 microRNA family is redundantly required for embryonic development and pharynx attachment in Caenorhabditis elegans. PMID:20421599
Flanking region sequence information to refine microRNA target predictions. PMID:20413915
MicroRNAs are expressed and processed by human primary macrophages. PMID:20403586
Identification of the miR-106b~25 microRNA cluster as a proto-oncogenic PTEN-targeting intron that cooperates with its host gene MCM7 in transformation. PMID:20388916
Unconstrained mining of transcript data reveals increased alternative splicing complexity in the human transcriptome. PMID:20385588
Investigation of post-transcriptional gene regulatory networks associated with autism spectrum disorders by microRNA expression profiling of lymphoblastoid cell lines. PMID:20374639
Intronic microRNAs support their host genes by mediating synergistic and antagonistic regulatory effects. PMID:20370903
Network modeling identifies molecular functions targeted by miR-204 to suppress head and neck tumor metastasis. PMID:20369013
Specificity and functionality of microRNA inhibitors. PMID:20359337
Identification of microRNAs associated with hyperthermia-induced cellular stress response. PMID:20352393
Estrogen receptor alpha controls a gene network in luminal-like breast cancer cells comprising multiple transcription factors and microRNAs. PMID:20348243
Transcriptome analysis reveals a major impact of JAK protein tyrosine kinase 2 (Tyk2) on the expression of interferon-responsive and metabolic genes. PMID:20338026
A dictionary on microRNAs and their putative target pathways. PMID:20299343
Discovery of novel microRNAs in female reproductive tract using next generation sequencing. PMID:20224791
Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression. PMID:20219930
Current knowledge of MicroRNAs and noncoding RNAs in virus-infected cells. PMID:20217543
MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing. PMID:20215419
Genome-wide comparative analysis of microRNAs in three non-human primates. PMID:20214803
MicroRNAs of Bombyx mori identified by Solexa sequencing. PMID:20199675
Identification of host encoded microRNAs interacting with novel swine-origin influenza A (H1N1) virus and swine influenza virus. PMID:20198183
The microRNA miR-124 controls gene expression in the sensory nervous system of Caenorhabditis elegans. PMID:20176573
Six RNA viruses and forty-one hosts: viral small RNAs and modulation of small RNA repertoires in vertebrate and invertebrate systems. PMID:20169186
Lists2Networks: integrated analysis of gene/protein lists. PMID:20152038
Distinctive patterns of microRNA expression in extraocular muscles. PMID:20145202
MicroRNA155 is induced in activated CD4(+) T cells of TNBS-induced colitis in mice. PMID:20143464
miRNA-21 regulates arsenic-induced anti-leukemia activity in myelogenous cell lines. PMID:20143188
Characterization of microRNAs from sheep (Ovis aries) using computational and experimental analyses. PMID:20140706
Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation. PMID:20137068
Cloning and validation of novel miRNA from basmati rice indicates cross talk between abiotic and biotic stresses. PMID:20131478
MicroRNA regulation of IFN-beta protein expression: rapid and sensitive modulation of the innate immune response. PMID:20130213
Joint genome-wide profiling of miRNA and mRNA expression in Alzheimer's disease cortex reveals altered miRNA regulation. PMID:20126538
DotKnot: pseudoknot prediction using the probability dot plot under a refined energy model. PMID:20123730
Predicting microRNA precursors with a generalized Gaussian components based density estimation algorithm. PMID:20122227
MTar: a computational microRNA target prediction architecture for human transcriptome. PMID:20122191
MicroRNA-224 is involved in transforming growth factor-beta-mediated mouse granulosa cell proliferation and granulosa cell function by targeting Smad4. PMID:20118412
MicroRNA activity is suppressed in mouse oocytes. PMID:20116252
MicroRNAs: master regulators of ethanol abuse and toxicity? PMID:20102566
microRNA expression profile and identification of miR-29 as a prognostic marker and pathogenetic factor by targeting CDK6 in mantle cell lymphoma. PMID:20086245
MicroRNA expression differentiates histology and predicts survival of lung cancer. PMID:20068076
MiR-205 silences MED1 in hypoxic primary human trophoblasts. PMID:20065103
Prediction of microRNAs affecting mRNA expression during retinal development. PMID:20053268
Differential decay of parent-of-origin-specific genomic sharing in cystic fibrosis-affected sib pairs maps a paternally imprinted locus to 7q34. PMID:20051989
Predicting miRNA's target from primary structure by the nearest neighbor algorithm. PMID:20041294
Relation between microRNA expression and progression and prognosis of gastric cancer: a microRNA expression analysis. PMID:20022810
Genomic organization of microRNAs. PMID:20020507
Conservation of miR-15a/16-1 and miR-15b/16-2 clusters. PMID:20013340
Gene-centered regulatory networks. PMID:20008400
MicroRNAs may mediate the down-regulation of neurokinin-1 receptor in chronic bladder pain syndrome. PMID:20008142
VirtualPlant: a software platform to support systems biology research. PMID:20007449
Deciphering the transcriptional circuitry of microRNA genes expressed during human monocytic differentiation. PMID:20003307
miR-221&222 regulate TRAIL resistance and enhance tumorigenicity through PTEN and TIMP3 downregulation. PMID:19962668
Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs. PMID:19961592
TTS mapping: integrative WEB tool for analysis of triplex formation target DNA sequences, G-quadruplets and non-protein coding regulatory DNA elements in the human genome. PMID:19958507
Consensus miRNA expression profiles derived from interplatform normalization of microarray data. PMID:19948767
Novel rank-based statistical methods reveal microRNAs with differential expression in multiple cancer types. PMID:19946373
Reciprocal regulation of microRNA-1 and insulin-like growth factor-1 signal transduction cascade in cardiac and skeletal muscle in physiological and pathological conditions. PMID:19933931
Characterisation of microRNA expression in post-natal mouse mammary gland development. PMID:19930549
Differential expression of miRNA patterns in renal cell carcinoma and nontumorous tissues. PMID:19921256
A novel microRNA targeting HDAC5 regulates osteoblast differentiation in mice and contributes to primary osteoporosis in humans. PMID:19920351
MicroRNA-133a protects against myocardial fibrosis and modulates electrical repolarization without affecting hypertrophy in pressure-overloaded adult hearts. PMID:19893015
Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach. PMID:19891781
Identification of viral microRNAs expressed in human sacral ganglia latently infected with herpes simplex virus 2. PMID:19889786
In-depth analysis of Kaposi's sarcoma-associated herpesvirus microRNA expression provides insights into the mammalian microRNA-processing machinery. PMID:19889781
A global analysis of evolutionary conservation among known and predicted gammaherpesvirus microRNAs. PMID:19889779
Promotion of embryonic cortico-cerebral neuronogenesis by miR-124. PMID:19883498
MicroRNAs in C. elegans Aging: Molecular Insurance for Robustness? PMID:19881908
The tedious task of finding homologous noncoding RNA genes. PMID:19861422
Regulation of miR-200 family microRNAs and ZEB transcription factors in ovarian cancer: evidence supporting a mesothelial-to-epithelial transition. PMID:19854497
miRGen 2.0: a database of microRNA genomic information and regulation. PMID:19850714
Characterization of global microRNA expression reveals oncogenic potential of miR-145 in metastatic colorectal cancer. PMID:19843336
Probe-level analysis of expression microarrays characterizes isoform-specific degradation during mouse oocyte maturation. PMID:19834616
RNA surveillance: molecular approaches in transcript quality control and their implications in clinical diseases. PMID:19829759
Computational identification and characteristics of novel microRNAs from the silkworm (Bombyx mori L.). PMID:19823945
MicroRNA 132 regulates nutritional stress-induced chemokine production through repression of SirT1. PMID:19819989
Combinatorial control of suicide gene expression by tissue-specific promoter and microRNA regulation for cancer therapy. PMID:19809402
PMRD: plant microRNA database. PMID:19808935
miRNAs in lung cancer - studying complex fingerprints in patient's blood cells by microarray experiments. PMID:19807914
Analysis of human CYP1A1 and CYP1A2 genes and their shared bidirectional promoter in eight world populations. PMID:19802894
Von Hippel-Lindau gene product modulates TIS11B expression in renal cell carcinoma: impact on vascular endothelial growth factor expression in hypoxia. PMID:19801654
MicroRNAs in the rhizobia legume symbiosis. PMID:19789286
MicroRNAs regulate osteogenesis and chondrogenesis of mouse bone marrow stromal cells. PMID:19787082
Comparative characterization of a temperature responsive gene (lactate dehydrogenase-B, ldh-b) in two congeneric tropical fish, Lates calcarifer and Lates niloticus. PMID:19787021
MicroRNA expression profiling during the life cycle of the silkworm (Bombyx mori). PMID:19785751
Ago2 immunoprecipitation identifies predicted microRNAs in human embryonic stem cells and neural precursors. PMID:19784364
Statistical use of argonaute expression and RISC assembly in microRNA target identification. PMID:19779550
MicroRNA-17-3p is a prostate tumor suppressor in vitro and in vivo, and is decreased in high grade prostate tumors analyzed by laser capture microdissection. PMID:19771525
Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules. PMID:19767456
Identification and characterization of miRNAs expressed in the bovine ovary. PMID:19765282
Human miRNA precursors with box H/ACA snoRNA features. PMID:19763159
Androgen-responsive gene database: integrated knowledge on androgen-responsive genes. PMID:19762544
Reticuloendotheliosis virus strain T induces miR-155, which targets JARID2 and promotes cell survival. PMID:19759154
Sequence features associated with microRNA strand selection in humans and flies. PMID:19732433
The FunGenES database: a genomics resource for mouse embryonic stem cell differentiation. PMID:19727443
Karyotype-specific microRNA signature in chronic lymphocytic leukemia. PMID:19717645
LIN-28 and the poly(U) polymerase PUP-2 regulate let-7 microRNA processing in Caenorhabditis elegans. PMID:19713957
Chromatin poises miRNA- and protein-coding genes for expression. PMID:19713549
microRNA profiling identifies cancer-specific and prognostic signatures in pediatric malignancies. PMID:19706822
MicroRNAs in plants: Possible contributions to phenotypic diversity. PMID:19704512
The role of miR-124a in early development of the Xenopus eye. PMID:19703558
Prediction of viral microRNA precursors based on human microRNA precursor sequence and structural features. PMID:19691855
MicroPC (microPC): A comprehensive resource for predicting and comparing plant microRNAs. PMID:19660144
Genome-wide survey of rice microRNAs and microRNA-target pairs in the root of a novel auxin-resistant mutant. PMID:19655164
First step in pre-miRNAs processing by human Dicer. PMID:19654583
MicroRNA-125b promotes neuronal differentiation in human cells by repressing multiple targets. PMID:19635812
Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection. PMID:19633723
Abundant and dynamically expressed miRNAs, piRNAs, and other small RNAs in the vertebrate Xenopus tropicalis. PMID:19628731
Differential micro RNA expression in PBMC from multiple sclerosis patients. PMID:19617918
Identification and characterization of 27 conserved microRNAs in citrus. PMID:19585144
MicroRNA-661, a c/EBPalpha target, inhibits metastatic tumor antigen 1 and regulates its functions. PMID:19584269
Current molecular diagnostics of breast cancer and the potential incorporation of microRNA. PMID:19580430
Limitations and possibilities of small RNA digital gene expression profiling. PMID:19564845
Clustered microRNAs' coordination in regulating protein-protein interaction network. PMID:19558649
ST14 (suppression of tumorigenicity 14) gene is a target for miR-27b, and the inhibitory effect of ST14 on cell growth is independent of miR-27b regulation. PMID:19546220
Thermodynamic characterization of tandem mismatches found in naturally occurring RNA. PMID:19509311
Identification and analysis of miRNAs in human breast cancer and teratoma samples using deep sequencing. PMID:19508715
VisHiC--hierarchical functional enrichment analysis of microarray data. PMID:19483095
Transcriptome-wide prediction of miRNA targets in human and mouse using FASTH. PMID:19478946
Comprehensive analysis of microRNA-mRNA co-expression in circadian rhythm. PMID:19478556
MirZ: an integrated microRNA expression atlas and target prediction resource. PMID:19468042
3'UTR-located ALU elements: donors of potential miRNA target sites and mediators of network miRNA-based regulatory interactions. PMID:19455205
Diet-induced hepatocellular carcinoma in genetically predisposed mice. PMID:19454484
Detection of intergenic non-coding RNAs expressed in the main developmental stages in Drosophila melanogaster. PMID:19451167
Identification of the human mature B cell miRNome. PMID:19446474
MicroRNA and Cancer: Tiny Molecules with Major Implications. PMID:19440450
Intra-platform repeatability and inter-platform comparability of microRNA microarray technology. PMID:19436744
Predicting potential miRNA target sites within gene promoters. PMID:19423343
Up-regulation of miR-21 by HER2/neu signaling promotes cell invasion. PMID:19419954
MicroRNAs are essential for development and function of inner ear hair cells in vertebrates. PMID:19416898
MicroRNAs and their potential for translation in prostate cancer. PMID:19414119
ChlamyCyc: an integrative systems biology database and web-portal for Chlamydomonas reinhardtii. PMID:19409111
A combinatorial approach to determine the context-dependent role in transcriptional and posttranscriptional regulation in Arabidopsis thaliana. PMID:19400940
MicroRNA profiling identifies miR-34a and miR-21 and their target genes JAG1 and WNT1 in the coordinate regulation of dendritic cell differentiation. PMID:19398721
Decreased expression of miR-125b and miR-100 in oral cancer cells contributes to malignancy. PMID:19396866
Repertoire of microRNAs in epithelial ovarian cancer as determined by next generation sequencing of small RNA cDNA libraries. PMID:19390579
MicroRNA-338-3p and microRNA-451 contribute to the formation of basolateral polarity in epithelial cells. PMID:19386621
Genetic variation in B-cell-activating factor is associated with an increased risk of developing B-cell non-Hodgkin lymphoma. PMID:19383901
Pre-micro RNA signatures delineate stages of endothelial cell transformation in Kaposi sarcoma. PMID:19381257
A microRNA imparts robustness against environmental fluctuation during development. PMID:19379693
Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize. PMID:19376930
Small RNA: a large contributor to carcinogenesis? PMID:19373515
Mutations in the seed region of human miR-96 are responsible for nonsyndromic progressive hearing loss. PMID:19363479
Microtranscriptome regulation by gonadotropin-releasing hormone. PMID:19356622
Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress. PMID:19353277
Members of miR-169 family are induced by high salinity and transiently inhibit the NF-YA transcription factor. PMID:19351418
The promoter of the pri-miR-375 gene directs expression selectively to the endocrine pancreas. PMID:19343226
MicroRNA-21 is up-regulated in allergic airway inflammation and regulates IL-12p35 expression. PMID:19342679
Evidence for association with hepatocellular carcinoma at the PAPSS1 locus on chromosome 4q25 in a family-based study. PMID:19337310
Regulation of RUNX3 tumor suppressor gene expression in cutaneous melanoma. PMID:19336521
Dicer-1-dependent Dacapo suppression acts downstream of Insulin receptor in regulating cell division of Drosophila germline stem cells. PMID:19336466
miR-8 microRNAs regulate the response to osmotic stress in zebrafish embryos. PMID:19332888
Toward stem cell systems biology: from molecules to networks and landscapes. PMID:19329576
Correlation of microRNA levels during hypoxia with predicted target mRNAs through genome-wide microarray analysis. PMID:19320992
Evolution of MIR168 paralogs in Brassicaceae. PMID:19309501
Emergence of a complex relationship between HIV-1 and the microRNA pathway. PMID:19301659
Lowly expressed human microRNA genes evolve rapidly. PMID:19299536
Identification of microRNAs with regulatory potential using a matched microRNA-mRNA time-course data. PMID:19295134
Role of 3'UTRs in the translation of mRNAs regulated by oncogenic eIF4E--a computational inference. PMID:19290046
The impact of microRNAs on colorectal cancer. PMID:19288129
An expanded seed sequence definition accounts for full regulation of the hid 3' UTR by bantam miRNA. PMID:19286629
miRNAs: Miracle or Mirage?: The Limes Against the Barbaric Floods of Leaky and Undesired Transcripts. PMID:19279697
The interplay between transcription factors and microRNAs in genome-scale regulatory networks. PMID:19274664
MicroRNA-328 negatively regulates the expression of breast cancer resistance protein (BCRP/ABCG2) in human cancer cells. PMID:19270061
Molecular assays for the detection of microRNAs in prostate cancer. PMID:19267923
Insect-Specific microRNA Involved in the Development of the Silkworm Bombyx mori. PMID:19262741
An integrative analysis of microRNA and mRNA expression--a case study. PMID:19259417
Little but loud: small RNAs have a resounding affect on ear development. PMID:19245798
Suppression of cell growth and invasion by miR-205 in breast cancer. PMID:19238171
Reciprocal regulation of myocardial microRNAs and messenger RNA in human cardiomyopathy and reversal of the microRNA signature by biomechanical support. PMID:19237659
A PCR-based platform for microRNA expression profiling studies. PMID:19218553
The microRNAs of Epstein-Barr Virus are expressed at dramatically differing levels among cell lines. PMID:19217135
Altered microRNA expression in patients with non-obstructive azoospermia. PMID:19210773
MicroRNA transcriptome profiles during swine skeletal muscle development. PMID:19208255
Computational prediction of novel non-coding RNAs in Arabidopsis thaliana. PMID:19208137
Identification of microRNA in the developing chick immune organs. PMID:19198828
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. PMID:19182780
CORNA: testing gene lists for regulation by microRNAs. PMID:19181683
miR-21: a small multi-faceted RNA. PMID:19175699
MicroRNA and cancer--focus on apoptosis. PMID:19175697
MicroRNAs as modulators of smoking-induced gene expression changes in human airway epithelium. PMID:19168627
New information content in RNA base pairing deduced from quantitative analysis of high-resolution structures. PMID:19150407
The role of microRNAs in gastrointestinal cancers. PMID:19148788
MicroRNA regulation of DNA repair gene expression in hypoxic stress. PMID:19141645
A transcription factor affinity-based code for mammalian transcription initiation. PMID:19141595
Genetic variations in microRNA-related genes are novel susceptibility loci for esophageal cancer risk. PMID:19138993
miRNA regulation of cytokine genes. PMID:19121586
MicroRNA-221-222 regulate the cell cycle in mast cells. PMID:19109175
Characterization and expression profiles of miRNAs in rice seeds. PMID:19103661
HuMiTar: a sequence-based method for prediction of human microRNA targets. PMID:19102780
Finding microRNA regulatory modules in human genome using rule induction. PMID:19091028
MiRTif: a support vector machine-based microRNA target interaction filter. PMID:19091027
Filtering of false positive microRNA candidates by a clustering-based approach. PMID:19091026
Using a kernel density estimation based classifier to predict species-specific microRNA precursors. PMID:19091019
Single nucleotide polymorphisms concordant with the horned/polled trait in Holsteins. PMID:19063733
A cross-species transcriptomics approach to identify genes involved in leaf development. PMID:19061504
Geographical mapping of a multifocal thyroid tumour using genetic alteration analysis & miRNA profiling. PMID:19055826
Differentiation stage-specific expression of microRNAs in B lymphocytes and diffuse large B-cell lymphomas. PMID:19047678
Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: new functional implications for MITEs. PMID:19037014
Identification of phylogenetically conserved sequence motifs in microRNA 5' flanking sites from C. elegans and C. briggsae. PMID:19036124
Does selection against transcriptional interference shape retroelement-free regions in mammalian genomes? PMID:19018283
Human multipotent stromal cells from bone marrow and microRNA: regulation of differentiation and leukemia inhibitory factor expression. PMID:19011087
High-resolution human core-promoter prediction with CoreBoost_HM. PMID:18997002
The emerging role of microRNAs in cardiac remodeling and heart failure. PMID:18988904
Transterm: a database to aid the analysis of regulatory sequences in mRNAs. PMID:18984623
Genome-scale spatiotemporal analysis of Caenorhabditis elegans microRNA promoter activity. PMID:18981266
Informatic resources for identifying and annotating structural RNA motifs. PMID:18979204
miR-296 regulates growth factor receptor overexpression in angiogenic endothelial cells. PMID:18977327
Identification of microRNA precursors with support vector machine and string kernel. PMID:18973868
Sequence space coverage, entropy of genomes and the potential to detect non-human DNA in human samples. PMID:18973670
Model-guided design of ligand-regulated RNAi for programmable control of gene expression. PMID:18956013
In silico genetic robustness analysis of secondary structural elements in the miRNA gene. PMID:18941828
Searching for potential microRNA-binding site mutations amongst known disease-associated 3' UTR variants. PMID:18923926
MicroRNA-7, a homeobox D10 target, inhibits p21-activated kinase 1 and regulates its functions. PMID:18922890
miR-451 regulates zebrafish erythroid maturation in vivo via its target gata2. PMID:18849488
MicroRNA-mediated up-regulation of an alternatively polyadenylated variant of the mouse cytoplasmic {beta}-actin gene. PMID:18835850
GermSAGE: a comprehensive SAGE database for transcript discovery on male germ cell development. PMID:18832368
Transcription factor and microRNA regulation in androgen-dependent and -independent prostate cancer cells. PMID:18831788
Analysis and classification of RNA tertiary structures. PMID:18824509
Identification of soybean microRNAs and their targets. PMID:18815805
MicroRNA miR-21 overexpression in human breast cancer is associated with advanced clinical stage, lymph node metastasis and patient poor prognosis. PMID:18812439
Design and delivery of antisense oligonucleotides to block microRNA function in cultured Drosophila and human cells. PMID:18802435
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. PMID:18799693
MicroRNA-155 is regulated by the transforming growth factor beta/Smad pathway and contributes to epithelial cell plasticity by targeting RhoA. PMID:18794355
A C. elegans genome-scale microRNA network contains composite feedback motifs with high flux capacity. PMID:18794350
Measuring microRNAs: comparisons of microarray and quantitative PCR measurements, and of different total RNA prep methods. PMID:18783629
Differential expression of microRNAs in early-stage neoplastic transformation in the lungs of F344 rats chronically treated with the tobacco carcinogen 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone. PMID:18780894
Expression profile of microRNAs in c-Myc induced mouse mammary tumors. PMID:18777135
Thermodynamic analysis of 5' and 3' single- and 3' double-nucleotide overhangs neighboring wobble terminal base pairs. PMID:18765476
Self containment, a property of modular RNA structures, distinguishes microRNAs. PMID:18725951
Identification of suitable endogenous control genes for microRNA gene expression analysis in human breast cancer. PMID:18718003
Hormonal regulation of MicroRNA expression in periovulatory mouse mural granulosa cells. PMID:18716288
The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages. PMID:18714353
Maternal Argonaute 2 is essential for early mouse development at the maternal-zygotic transition. PMID:18701707
miR-16 family induces cell cycle arrest by regulating multiple cell cycle genes. PMID:18701644
Chromatin, cancer and drug therapies. PMID:18691602
Deletion of Dicer in somatic cells of the female reproductive tract causes sterility. PMID:18687735
An intronic microRNA silences genes that are functionally antagonistic to its host gene. PMID:18684991
Submergence-responsive MicroRNAs are potentially involved in the regulation of morphological and metabolic adaptations in maize root cells. PMID:18669574
MicroRNA expression in canine mammary cancer. PMID:18665421
Sequence relationships among C. elegans, D. melanogaster and human microRNAs highlight the extensive conservation of microRNAs in biology. PMID:18665242
Poly A- transcripts expressed in HeLa cells. PMID:18665230
The noncoding RNA, miR-126, suppresses the growth of neoplastic cells by targeting phosphatidylinositol 3-kinase signaling and is frequently lost in colon cancers. PMID:18663744
Structural conservation versus functional divergence of maternally expressed microRNAs in the Dlk1/Gtl2 imprinting region. PMID:18651963
Comparative transcriptomics of human multipotent stem cells during adipogenesis and osteoblastogenesis. PMID:18637193
Hypoxia response and microRNAs: no longer two separate worlds. PMID:18624759
MicroRNA expression in lymphoid malignancies: new hope for diagnosis and therapy? PMID:18624758
Systems approaches to identifying gene regulatory networks in plants. PMID:18616425
An insect virus-encoded microRNA regulates viral replication. PMID:18614632
Regulation of cyclin dependent kinase 6 by microRNA 124 in medulloblastoma. PMID:18607543
Human cytomegalovirus infection alters the expression of cellular microRNA species that affect its replication. PMID:18596100
Using hippocampal microRNA expression differences between mouse inbred strains to characterise miRNA function. PMID:18594913
Nicotinic acetylcholine receptor beta2 subunit gene implicated in a systems-based candidate gene study of smoking cessation. PMID:18593715
MicroRNA 21 promotes glioma invasion by targeting matrix metalloproteinase regulators. PMID:18591254
MicroRNA prediction with a novel ranking algorithm based on random walks. PMID:18586744
MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries. PMID:18583537
Highly sensitive and specific microRNA expression profiling using BeadArray technology. PMID:18579563
Temporal regulation of metamorphic processes in Drosophila by the let-7 and miR-125 heterochronic microRNAs. PMID:18571409
Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation. PMID:18562676
CADM1 is a strong neuroblastoma candidate gene that maps within a 3.72 Mb critical region of loss on 11q23. PMID:18559103
The microRNAs involved in human myeloid differentiation and myelogenous/myeloblastic leukemia. PMID:18554315
Genomic mid-range inhomogeneity correlates with an abundance of RNA secondary structures. PMID:18549495
Viral and cellular microRNAs as determinants of viral pathogenesis and immunity. PMID:18541214
MicroRNA-mediated control of cell fate in megakaryocyte-erythrocyte progenitors. PMID:18539114
Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments. PMID:18515841
The microRNA miR-1 regulates a MEF-2-dependent retrograde signal at neuromuscular junctions. PMID:18510933
Identification and characteristics of microRNAs from Bombyx mori. PMID:18507836
Cloning, characterization, and expression of microRNAs from the Asian malaria mosquito, Anopheles stephensi. PMID:18500992
Control of antagonistic components of the hedgehog signaling pathway by microRNAs in Drosophila. PMID:18493062
MicroRNA-encoding long non-coding RNAs. PMID:18492288
MD-SeeGH: a platform for integrative analysis of multi-dimensional genomic data. PMID:18492270
Distinctive patterns of microRNA expression associated with karyotype in acute myeloid leukaemia. PMID:18478077
Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome. PMID:18472421
A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach. PMID:18469162
Molecular architecture of a miRNA-regulated 3' UTR. PMID:18463285
GraphWeb: mining heterogeneous biological networks for gene modules with functional significance. PMID:18460544
MicroRNA-155 is a negative regulator of activation-induced cytidine deaminase. PMID:18450484
GenoWatch: a disease gene mining browser for association study. PMID:18440974
miRDB: a microRNA target prediction and functional annotation database with a wiki interface. PMID:18426918
Cloning and characterization of microRNAs from rainbow trout (Oncorhynchus mykiss): their expression during early embryonic development. PMID:18412968
Novel and nodulation-regulated microRNAs in soybean roots. PMID:18402695
miR-Q: a novel quantitative RT-PCR approach for the expression profiling of small RNA molecules such as miRNAs in a complex sample. PMID:18400113
A scoring matrix approach to detecting miRNA target sites. PMID:18377655
RNACompress: Grammar-based compression and informational complexity measurement of RNA secondary structure. PMID:18373878
Dual coding of siRNAs and miRNAs by plant transposable elements. PMID:18367716
The Songbird Neurogenomics (SoNG) Initiative: community-based tools and strategies for study of brain gene function and evolution. PMID:18366674
Herbivory-induced changes in the small-RNA transcriptome and phytohormone signaling in Nicotiana attenuata. PMID:18339806
MicroRNA target detection and analysis for genes related to breast cancer using MDLcompress. PMID:18317504
KnotSeeker: heuristic pseudoknot detection in long RNA sequences. PMID:18314500
Identification of novel and candidate miRNAs in rice by high throughput sequencing. PMID:18312648
Sequence variation of MicroRNAs and their binding sites in Arabidopsis. PMID:18305205
A GATA-1-regulated microRNA locus essential for erythropoiesis. PMID:18303114
MicroRNAs and the advent of vertebrate morphological complexity. PMID:18287013
Molecular characterization, tissue expression and sequence variability of the barramundi (Lates calcarifer) myostatin gene. PMID:18282302
Unintentional miRNA ablation is a risk factor in gene knockout studies: a short report. PMID:18282110
Ancora: a web resource for exploring highly conserved noncoding elements and their association with developmental regulatory genes. PMID:18279518
MicroRNA Mirn140 modulates Pdgf signaling during palatogenesis. PMID:18264099
Characterization of a newly developed chicken 44K Agilent microarray. PMID:18237426
MicroRNA expression in the adult mouse central nervous system. PMID:18230762
Meta-analysis of breast cancer microarray studies in conjunction with conserved cis-elements suggest patterns for coordinate regulation. PMID:18226260
Exploration of small RNAs. PMID:18225959
miRNAminer: a tool for homologous microRNA gene search. PMID:18215311
Discriminating single-base difference miRNA expressions using microarray Probe Design Guru (ProDeG). PMID:18208839
Ectopic expression of miR-126*, an intronic product of the vascular endothelial EGF-like 7 gene, regulates prostein translation and invasiveness of prostate cancer LNCaP cells. PMID:18193184
Identification of novel homologous microRNA genes in the rhesus macaque genome. PMID:18186931
Members of the miRNA-200 family regulate olfactory neurogenesis. PMID:18184563
MicroRNA-183 family conservation and ciliated neurosensory organ expression. PMID:18184361
A single Hox locus in Drosophila produces functional microRNAs from opposite DNA strands. PMID:18172160
Conservation and divergence of microRNAs in Populus. PMID:18166134
The microRNA.org resource: targets and expression. PMID:18158296
Experimental validation of miRNA targets. PMID:18158132
Comparative genomics beyond sequence-based alignments: RNA structures in the ENCODE regions. PMID:18096747
The Rice Annotation Project Database (RAP-DB): 2008 update. PMID:18089549
Ab initio identification of human microRNAs based on structure motifs. PMID:18088431
microRNAs: a new emerging class of players for disease diagnostics and gene therapy. PMID:18088390
The functions of herpesvirus-encoded microRNAs. PMID:18087721
Most Caenorhabditis elegans microRNAs are individually not essential for development or viability. PMID:18085825
Investigation of miRNA biology by bioinformatic tools and impact of miRNAs in colorectal cancer--regulatory relationship of c-Myc and p53 with miRNAs. PMID:18079974
A role for microRNAs in maintenance of mouse mammary epithelial progenitor cells. PMID:18079172
miR-122 targeting with LNA/2'-O-methyl oligonucleotide mixmers, peptide nucleic acids (PNA), and PNA-peptide conjugates. PMID:18073344
microRNA-155 regulates the generation of immunoglobulin class-switched plasma cells. PMID:18055230
Intragenomic matching reveals a huge potential for miRNA-mediated regulation in plants. PMID:18052543
Identification of novel Drosophila melanogaster microRNAs. PMID:18043761
Genome-wide mapping and analysis of active promoters in mouse embryonic stem cells and adult organs. PMID:18042645
MicroRNA: implications for cancer. PMID:18040713
Altered retinal microRNA expression profile in a mouse model of retinitis pigmentosa. PMID:18034880
Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation. PMID:18032731
miRNAMap 2.0: genomic maps of microRNAs in metazoan genomes. PMID:18029362
Human papillomavirus type 16 reduces the expression of microRNA-218 in cervical carcinoma cells. PMID:17998940
In silico genetic robustness analysis of microRNA secondary structures: potential evidence of congruent evolution in microRNA. PMID:17997861
Identifications of conserved 7-mers in 3'-UTRs and microRNAs in Drosophila. PMID:17996040
Multiplexed detection methods for profiling microRNA expression in biological samples. PMID:17994653
Concise review: MicroRNA expression in multipotent mesenchymal stromal cells. PMID:17991914
miRBase: tools for microRNA genomics. PMID:17991681
Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes. PMID:17989255
Reliable prediction of regulator targets using 12 Drosophila genomes. PMID:17989251
Functional screening identifies miR-315 as a potent activator of Wingless signaling. PMID:17989227
RNA sequence analysis defines Dicer's role in mouse embryonic stem cells. PMID:17989215
UTRome.org: a platform for 3'UTR biology in C. elegans. PMID:17986455
TranspoGene and microTranspoGene: transposed elements influence on the transcriptome of seven vertebrates and invertebrates. PMID:17986453
The HGNC Database in 2008: a resource for the human genome. PMID:17984084
Gramene: a growing plant comparative genomics resource. PMID:17984077
A human cytomegalovirus-encoded microRNA regulates expression of multiple viral genes involved in replication. PMID:17983268
Adaptive gene expression divergence inferred from population genomics. PMID:17967066
Genomic analysis of human microRNA transcripts. PMID:17965236
miRRim: a novel system to find conserved miRNAs with high sensitivity and specificity. PMID:17959929
Cloning and expression profiling of small RNAs expressed in the mouse ovary. PMID:17951331
miRGator: an integrated system for functional annotation of microRNAs. PMID:17942429
Cloning and expression profiling of testis-expressed microRNAs. PMID:17936267
Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs. PMID:17931426
Gene expression trees in lymphoid development. PMID:17925013
MicroRNA expression profiling of human breast cancer identifies new markers of tumor subtype. PMID:17922911
The small RNA repertoire of Dictyostelium discoideum and its regulation by components of the RNAi pathway. PMID:17916577
Modulation of LMP1 protein expression by EBV-encoded microRNAs. PMID:17911266
Mammalian microRNA prediction through a support vector machine model of sequence and structure. PMID:17895987
Comparison of the contributions of the nuclear and cytoplasmic compartments to global gene expression in human cells. PMID:17894886
Prediction and preliminary validation of oncogene regulation by miRNAs. PMID:17877811
MiRFinder: an improved approach and software implementation for genome-wide fast microRNA precursor scans. PMID:17868480
MicroRNA regulation of cyclooxygenase-2 during embryo implantation. PMID:17848513
Detection of RNA structures in porcine EST data and related mammals. PMID:17845718
Differential expression of microRNAs with progression of gestation and inflammation in the human chorioamniotic membranes. PMID:17826424
Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray. PMID:17785534
Detection of a microRNA signal in an in vivo expression set of mRNAs. PMID:17726534
Tissue-dependent paired expression of miRNAs. PMID:17726050
The Drosophila nerfin-1 mRNA requires multiple microRNAs to regulate its spatial and temporal translation dynamics in the developing nervous system. PMID:17714701
Conservation and evolution of miRNA regulatory programs in plant development. PMID:17709279
Vir-Mir db: prediction of viral microRNA candidate hairpins. PMID:17702763
The roles of binding site arrangement and combinatorial targeting in microRNA repression of gene expression. PMID:17697356
miRAS: a data processing system for miRNA expression profiling study. PMID:17683571
A simple array platform for microRNA analysis and its application in mouse tissues. PMID:17675362
Chromosomal rearrangements and microRNAs: a new cancer link with clinical implications. PMID:17671640
Human microRNA-155 on chromosome 21 differentially interacts with its polymorphic target in the AGTR1 3' untranslated region: a mechanism for functional single-nucleotide polymorphisms related to phenotypes. PMID:17668390
Sorting of Drosophila small silencing RNAs. PMID:17662944
Distinct ribonucleoprotein reservoirs for microRNA and siRNA populations in C. elegans. PMID:17652138
Characterization and expression patterns of let-7 microRNA in the silkworm (Bombyx mori). PMID:17651473
Use of tiling array data and RNA secondary structure predictions to identify noncoding RNA genes. PMID:17645787
Host immune system gene targeting by a viral miRNA. PMID:17641203
Expression profiling in vivo demonstrates rapid changes in lung microRNA levels following lipopolysaccharide-induced inflammation but not in the anti-inflammatory action of glucocorticoids. PMID:17640343
Global and local architecture of the mammalian microRNA-transcription factor regulatory network. PMID:17630826
Defining embryonic stem cell identity using differentiation-related microRNAs and their potential targets. PMID:17610011
Comparison of miRNA expression patterns using total RNA extracted from matched samples of formalin-fixed paraffin-embedded (FFPE) cells and snap frozen cells. PMID:17603869
Computational analysis of genetic loci required for amphid structure and functions and their possibly corresponding microRNAs in C. elegans. PMID:17592520
miR-200b mediates post-transcriptional repression of ZFHX1B. PMID:17585049
Aberrant allele frequencies of the SNPs located in microRNA target sites are potentially associated with human cancers. PMID:17584784
MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals. PMID:17560377
Spatial preferences of microRNA targets in 3' untranslated regions. PMID:17555584
A new advance in alternative splicing databases: from catalogue to detailed analysis of regulation of expression and function of human alternative splicing variants. PMID:17547750
GeneHub-GEPIS: digital expression profiling for normal and cancer tissues based on an integrated gene database. PMID:17545196
Computational and transcriptional evidence for microRNAs in the honey bee genome. PMID:17543122
Cloning and characterization of microRNAs from wheat (Triticum aestivum L.). PMID:17543110
Identification of candidate regulatory sequences in mammalian 3' UTRs by statistical analysis of oligonucleotide distributions. PMID:17524134
Regulatory conservation of protein coding and microRNA genes in vertebrates: lessons from the opossum genome. PMID:17506886
MicroRNA and brain tumors: a cause and a cure? PMID:17504026
FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments. PMID:17478504
Requirement of bic/microRNA-155 for normal immune function. PMID:17463290
Marek's disease virus type 2 (MDV-2)-encoded microRNAs show no sequence conservation with those encoded by MDV-1. PMID:17459919
Chemical synthesis of a very long oligoribonucleotide with 2-cyanoethoxymethyl (CEM) as the 2'-O-protecting group: structural identification and biological activity of a synthetic 110mer precursor-microRNA candidate. PMID:17459888
Unmasking activation of the zygotic genome using chromosomal deletions in the Drosophila embryo. PMID:17456005
Regulatory circuit of human microRNA biogenesis. PMID:17447837
Origin and evolution of human microRNAs from transposable elements. PMID:17435244
mir-29 regulates Mcl-1 protein expression and apoptosis. PMID:17404574
Rat Mcs5a is a compound quantitative trait locus with orthologous human loci that associate with breast cancer risk. PMID:17404222
Distance constraints between microRNA target sites dictate efficacy and cooperativity. PMID:17389647
Human polymorphism at microRNAs and microRNA target sites. PMID:17360642
Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution. PMID:17359535
A novel microarray approach reveals new tissue-specific signatures of known and predicted mammalian microRNAs. PMID:17355992
Effect of BRAFV600E mutation on transcription and post-transcriptional regulation in a papillary thyroid carcinoma model. PMID:17355635
Abnormal microRNA-16 locus with synteny to human 13q14 linked to CLL in NZB mice. PMID:17351108
A bootstrap based analysis pipeline for efficient classification of phylogenetically related animal miRNAs. PMID:17341314
A family of human microRNA genes from miniature inverted-repeat transposable elements. PMID:17301878
Analysis of a set of Australian northern brown bandicoot expressed sequence tags with comparison to the genome sequence of the South American grey short tailed opossum. PMID:17298671
MicroTar: predicting microRNA targets from RNA duplexes. PMID:17254305
Transcripts targeted by the microRNA-16 family cooperatively regulate cell cycle progression. PMID:17242205
An annotated cDNA library and microarray for large-scale gene-expression studies in the ant Solenopsis invicta. PMID:17224046
A microRNA signature of hypoxia. PMID:17194750
Unique folding of precursor microRNAs: quantitative evidence and implications for de novo identification. PMID:17194722
A family of microRNAs present in plants and animals. PMID:17189346
GenomeTrafac: a whole genome resource for the detection of transcription factor binding site clusters associated with conventional and microRNA encoding genes conserved between mouse and human gene orthologs. PMID:17178752
CSRDB: a small RNA integrated database and browser resource for cereals. PMID:17169981
Effect of ret/PTC 1 rearrangement on transcription and post-transcriptional regulation in a papillary thyroid carcinoma model. PMID:17156473
The Molecular Biology Database Collection: 2007 update. PMID:17148484
ViTa: prediction of host microRNAs targets on viruses. PMID:17148483
RNAdb 2.0--an expanded database of mammalian non-coding RNAs. PMID:17145715
MicroRNA-206 colocalizes with ribosome-rich regions in both the nucleolus and cytoplasm of rat myogenic cells. PMID:17135348
Activation of an oncogenic microRNA cistron by provirus integration. PMID:17121985
miRGen: a database for the study of animal microRNA genomic organization and function. PMID:17108354
Direct and sensitive miRNA profiling from low-input total RNA. PMID:17105992
Evidence for a microRNA expansion in the bilaterian ancestor. PMID:17103184
PolymiRTS Database: linking polymorphisms in microRNA target sites with complex traits. PMID:17099235
fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences. PMID:17099231
SAGE detects microRNA precursors. PMID:17090314
A role for Dicer in immune regulation. PMID:17060477
Computational prediction of microRNAs encoded in viral and other genomes. PMID:17057374
MicroRNAs in gene regulation: when the smallest governs it all. PMID:17057368
Detection of the argonaute protein Ago2 and microRNAs in the RNA induced silencing complex (RISC) using a monoclonal antibody. PMID:17054975
miR-7b, a microRNA up-regulated in the hypothalamus after chronic hyperosmolar stimulation, inhibits Fos translation. PMID:17028171
Are microRNAs located in genomic regions associated with cancer? PMID:17003783
Comparative sequence analysis reveals an intricate network among REST, CREB and miRNA in mediating neuronal gene expression. PMID:17002790
Effects of Dicer and Argonaute down-regulation on mRNA levels in human HEK293 cells. PMID:16971455
HIV-l and the microRNA-guided silencing pathway: an intricate and multifaceted encounter. PMID:16889864
MicroRNA promoter element discovery in Arabidopsis. PMID:16888323
A microRNA detection system based on padlock probes and rolling circle amplification. PMID:16888321
NF-kappaB-dependent induction of microRNA miR-146, an inhibitor targeted to signaling proteins of innate immune responses. PMID:16885212
Extensive post-transcriptional regulation of microRNAs and its implications for cancer. PMID:16882971
MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology. PMID:16849698
CRSD: a comprehensive web server for composite regulatory signature discovery. PMID:16845073
RNAhybrid: microRNA target prediction easy, fast and flexible. PMID:16845047
RegRNA: an integrated web server for identifying regulatory RNA motifs and elements. PMID:16845041
CrossLink: visualization and exploration of sequence relationships between (micro) RNAs. PMID:16845036
Improved targeting of miRNA with antisense oligonucleotides. PMID:16690972
miRBase: integrating microRNA annotation and deep-sequencing data PubMed citations: 1833.

1833 articles citing: miRBase: integrating microRNA annotation and deep-sequencing data

Integrated Analysis of Microarray, Small RNA, and Degradome Datasets Uncovers the Role of MicroRNAs in Temperature-Sensitive Genic Male Sterility in Wheat. PMID:35897633
Genome-wide CRISPR screen for HSV-1 host factors reveals PAPSS1 contributes to heparan sulfate synthesis. PMID:35854076
MiR-20a: a mechanosensitive microRNA that regulates fluid shear stress-mediated osteogenic differentiation via the BMP2 signaling pathway by targeting BAMBI and SMAD6. PMID:35845505
Molecular Dissection of a Conserved Cluster of miRNAs Identifies Critical Structural Determinants That Mediate Differential Processing. PMID:35784477
Differentially Expressed Bone Marrow microRNAs Are Associated With Soluble HLA-G Bone Marrow Levels in Childhood Leukemia. PMID:35774498
Identification of a circulating microRNAs biomarker panel for non-invasive diagnosis of coronary artery disease: case-control study. PMID:35751015
NGS-identified miRNAs in Canine Mammary Gland Tumors Show Unexpected Expression Alterations in qPCR Analysis. PMID:35738588
Expression and Secretion of Circular RNAs in the Parasitic Nematode, Ascaris suum. PMID:35711944
Cold atmospheric plasmas target breast cancer stemness via modulating AQP3-19Y mediated AQP3-5K and FOXO1 K48-ubiquitination. PMID:35637961
Construction and characterization of a de novo draft genome of garden cress (Lepidium sativum L.). PMID:35596045
Dissection of the microRNA Network Regulating Hedgehog Signaling in Drosophila. PMID:35573695
The Role of Non-Coding RNAs in the Human Placenta. PMID:35563893
A novel information diffusion method based on network consistency for identifying disease related microRNAs. PMID:35558942
New 3D graphical representation for RNA structure analysis and its application in the pre-miRNA identification of plants. PMID:35548744
LSGSP: a novel miRNA-disease association prediction model using a Laplacian score of the graphs and space projection federated method. PMID:35531537
miR-425 suppresses EMT and the development of TNBC (triple-negative breast cancer) by targeting the TGF-β 1/SMAD 3 signaling pathway. PMID:35521597
miR-16-5p Is a Novel Mediator of Venous Smooth Muscle Phenotypic Switching. PMID:35501542
A systems genomics approach to uncover patient-specific pathogenic pathways and proteins in ulcerative colitis. PMID:35484353
The Multiverse of Plant Small RNAs: How Can We Explore It? PMID:35409340
Biogenesis, Functions, Interactions, and Resources of Non-Coding RNAs in Plants. PMID:35409060
Evidence of antagonistic predictive effects of miRNAs in breast cancer cohorts through data-driven networks. PMID:35338170
Emerging function and clinical significance of extracellular vesicle noncoding RNAs in lung cancer. PMID:35317517
microRNA profile of Hermetia illucens (black soldier fly) and its implications on mass rearing. PMID:35298540
Analysing miRNA-Target Gene Networks in Inflammatory Bowel Disease and Other Complex Diseases Using Transcriptomic Data. PMID:35205414
miRNA-Mediated Priming of Macrophage M1 Differentiation Differs in Gram-Positive and Gram-Negative Settings. PMID:35205256
Reinfection of Transplanted Livers in HCV- and HCV/HIV-Infected Patients Is Characterized by a Different MicroRNA Expression Profile. PMID:35203343
Oscillatory Behaviors of microRNA Networks: Emerging Roles in Retinal Development. PMID:35186936
Aberrant Expressional Profiling of Small RNA by Cold Atmospheric Plasma Treatment in Human Chronic Myeloid Leukemia Cells. PMID:35186012
Associations between the Levels of Estradiol-, Progesterone-, and Testosterone-Sensitive MiRNAs and Main Clinicopathologic Features of Breast Cancer. PMID:35055320
Computational pathology aids derivation of microRNA biomarker signals from Cytosponge samples. PMID:35051729
Preclinical development and phase 1 trial of a novel siRNA targeting lipoprotein(a). PMID:35027752
Altered White Matter and microRNA Expression in a Murine Model Related to Williams Syndrome Suggests That miR-34b/c Affects Brain Development via Ptpru and Dcx Modulation. PMID:35011720
The Study of Cerebrospinal Fluid microRNAs in Spinal Cord Injury and Neurodegenerative Diseases: Methodological Problems and Possible Solutions. PMID:35008540
Orange Juice Attenuates Circulating miR-150-5p, miR-25-3p, and miR-451a in Healthy Smokers: A Randomized Crossover Study. PMID:35004810
miR-223: An Immune Regulator in Infectious Disorders. PMID:34956210
Systematic Characterization of MicroRNA Processing Modes in Plants With Parallel Amplification of RNA Ends. PMID:34950175
Tr-milRNA1 Contributes to Lignocellulase Secretion under Heat Stress by Regulating the Lectin-Type Cargo Receptor Gene Trvip36 in Trichoderma guizhouence NJAU 4742. PMID:34946980
SARS-CoV-2 expresses a microRNA-like small RNA able to selectively repress host genes. PMID:34903581
MYCN in Neuroblastoma: "Old Wine into New Wineskins". PMID:34842635
Protein-Based Systems for Translational Regulation of Synthetic mRNAs in Mammalian Cells. PMID:34833067
Comparative Analysis of Coding and Non-Coding Features within Insect Tolerance Loci in Wheat with Their Homologs in Cereal Genomes. PMID:34830231
microRNA-194 is increased in polycystic ovary syndrome granulosa cell and induce KGN cells apoptosis by direct targeting heparin-binding EGF-like growth factor. PMID:34814928
Can parasite-derived microRNAs differentiate active and inactive cystic echinococcosis patients? PMID:34811587
LncRNA RBPMS-AS1 promotes NRGN transcription to enhance the radiosensitivity of glioblastoma through the microRNA-301a-3p/CAMTA1 axis. PMID:34800915
Downregulation of microRNA-6125 promotes colorectal cancer growth through YTHDF2-dependent recognition of N6-methyladenosine-modified GSK3β. PMID:34709763
MicroRNAs in the Onset of Schizophrenia. PMID:34685659
Parkinson's disease and microRNAs - Lessons from model organisms and human studies. PMID:34634413
High expression level of miR-1260 family in the peripheral blood of patients with ovarian carcinoma. PMID:34629107
miR profile in pagetic osteoclasts: from large-scale sequencing to gene expression study. PMID:34609560
Exploration of alcohol use disorder-associated brain miRNA-mRNA regulatory networks. PMID:34601489
The genome of the naturally evolved obesity-prone Ossabaw miniature pig. PMID:34585119
Identification and Characterization of Verticillium nonalfalfae-Responsive MicroRNAs in the Roots of Resistant and Susceptible Hop Cultivars. PMID:34579416
Diagnostic and Prognostic Potential of MiR-379/656 MicroRNA Cluster in Molecular Subtypes of Breast Cancer. PMID:34575183
Differentially Regulated miRNAs and Their Related Molecular Pathways in Lichen Sclerosus. PMID:34571940
Modulation of bioelectric cues in the evolution of flying fishes. PMID:34534441
MicroRNAs in Woody Plants. PMID:34531880
The Copper-microRNA Pathway Is Integrated with Developmental and Environmental Stress Responses in Arabidopsis thaliana. PMID:34502449
Cerium Oxide Nanoparticle Administration to Skeletal Muscle Cells under Different Gravity and Radiation Conditions. PMID:34410709
Single paternal dexamethasone challenge programs offspring metabolism and reveals multiple candidates in RNA-mediated inheritance. PMID:34386731
Circular RNA Circ_0005564 promotes osteogenic differentiation of bone marrow mesenchymal cells in osteoporosis. PMID:34374320
Large Drosophila germline piRNA clusters are evolutionarily labile and dispensable for transposon regulation. PMID:34352205
MicroRNA profile of the strobilated worms of Echinococcus granulosus derived from in vivo and in vitro systems by using high-throughput approach. PMID:34351489
Epigenetic regulation of inflammatory factors in adipose tissue. PMID:34332076
MicroRNA Regulation of Bone Marrow Mesenchymal Stem Cell Chondrogenesis: Toward Articular Cartilage. PMID:34328786
Taxallnomy: an extension of NCBI Taxonomy that produces a hierarchically complete taxonomic tree. PMID:34325658
A structure-specific small molecule inhibits a miRNA-200 family member precursor and reverses a type 2 diabetes phenotype. PMID:34320373
Male-Biased microRNA Discovery in the Pea Aphid. PMID:34201015
Direct Molecular Evidence for an Ancient, Conserved Developmental Toolkit Controlling Posttranscriptional Gene Regulation in Land Plants. PMID:34196710
Placental extracellular vesicles-associated microRNA-519c mediates endotoxin adaptation in pregnancy. PMID:34181894
Transcriptomic, proteomic and phosphoproteomic underpinnings of daily exercise performance and zeitgeber activity of training in mouse muscle. PMID:34142717
Mapping genetic variability in mature miRNAs and miRNA binding sites in prostate cancer. PMID:34099864
Pan-Genome miRNomics in Brachypodium. PMID:34065739
Evolutionary divergence of a Hoxa2b hindbrain enhancer in syngnathids mimics results of functional assays. PMID:34003345
Next-Generation Sequencing Identification and Characterization of MicroRNAs in Dwarfed Citrus Trees Infected With Citrus Dwarfing Viroid in High-Density Plantings. PMID:33995303
Upregulation of miR-3195, miR-3687 and miR-4417 is associated with castration-resistant prostate cancer. PMID:33990872
Bisulphite miRNA-seq reveals widespread CpG and non-CpG 5-(hydroxy)methyl-Cytosine in human microRNAs. PMID:33980133
Profiling of Primary and Mature miRNA Expression in Atherosclerosis-Associated Cell Types. PMID:33980036
Genome-wide analysis of microRNA156 and its targets, the genes encoding SQUAMOSA promoter-binding protein-like (SPL) transcription factors, in the grass family Poaceae. PMID:33973419
Simultaneous learning of individual microRNA-gene interactions and regulatory comodules. PMID:33971820
Exploring the molecular content of CHO exosomes during bioprocessing. PMID:33937930
Extracellular Vesicles from Human Adipose-Derived Mesenchymal Stem Cells: A Review of Common Cargos. PMID:33904115
Paired-end small RNA sequencing reveals a possible overestimation in the isomiR sequence repertoire previously reported from conventional single read data analysis. PMID:33902448
LncRNA CRNDE promotes the progression and angiogenesis of pancreatic cancer via miR-451a/CDKN2D axis. PMID:33882369
Single nucleotide polymorphisms affect miRNA target prediction in bovine. PMID:33882076
Deciphering the role of microRNAs during Pi54 gene mediated Magnaporthe oryzae resistance response in rice. PMID:33854289
A multiparametric extraction method for Vn96-isolated plasma extracellular vesicles and cell-free DNA that enables multi-omic profiling. PMID:33850235
The RabGAP TBC-11 controls Argonaute localization for proper microRNA function in C. elegans. PMID:33826611
Profile of Small RNAs, vDNA Forms and Viral Integrations in Late Chikungunya Virus Infection of Aedes albopictus Mosquitoes. PMID:33806250
miRCOVID-19: Potential Targets of Human miRNAs in SARS-CoV-2 for RNA-Based Drug Discovery. PMID:33801496
Computational meta-analysis of ribosomal RNA fragments: potential targets and interaction mechanisms. PMID:33772581
The role of miRNA in plant-virus interaction: a review. PMID:33772417
Small RNAs as biomarkers to differentiate benign and malign prostate diseases: An alternative for transrectal punch biopsy of the prostate? PMID:33760831
Expression profiling of Echinococcus multilocularis miRNAs throughout metacestode development in vitro. PMID:33750964
Longitudinal profiling of circulating miRNA during cardiac allograft rejection: a proof-of-concept study. PMID:33713567
MicroRNAs and Long Non-Coding RNAs as Potential Candidates to Target Specific Motifs of SARS-CoV-2. PMID:33670580
Small in Size, but Large in Action: microRNAs as Potential Modulators of PTEN in Breast and Lung Cancers. PMID:33670518
Honeysuckle Aqueous Extracts Induced let-7a Suppress EV71 Replication and Pathogenesis In Vitro and In Vivo and Is Predicted to Inhibit SARS-CoV-2. PMID:33669264
Deletion of hippocampal Glucocorticoid receptors unveils sex-biased microRNA expression and neuronal morphology alterations in mice. PMID:33665240
Comparison of miRNA expressions among benign, premalignant and malignant lesions of the larynx: could they be transformation biomarkers? PMID:33640023
MicroRNA Mimics or Inhibitors as Antiviral Therapeutic Approaches Against COVID-19. PMID:33638807
Dicer-like proteins influence Arabidopsis root microbiota independent of RNA-directed DNA methylation. PMID:33637135
Peripheral Blood Cells from Patients with Hodgkin's and Diffuse Large B Cell Lymphomas May Be a Better Source of Candidate Diagnostic miRNAs Than Circulating miRNAs. PMID:33628777
De novo assembly and characterization of the first draft genome of quince (Cydonia oblonga Mill.). PMID:33589687
Integration of Transcriptional and Post-transcriptional Analysis Revealed the Early Response Mechanism of Sugarcane to Cold Stress. PMID:33569078
Techniques for Characterizing Cytomegalovirus-Encoded miRNAs. PMID:33555594
Stem cell secretome, regeneration, and clinical translation: a narrative review. PMID:33553363
MicroRNA-140-5p regulates the proliferation, apoptosis and inflammation of RA FLSs by repressing STAT3. PMID:33456538
A genome-wide microRNA screen identifies the microRNA-183/96/182 cluster as a modulator of circadian rhythms. PMID:33443164
Efficient deletion of multiple circle RNA loci by CRISPR-Cas9 reveals Os06circ02797 as a putative sponge for OsMIR408 in rice. PMID:33440058
Unbiased RNA-Seq-driven identification and validation of reference genes for quantitative RT-PCR analyses of pooled cancer exosomes. PMID:33407103
DIANA-mAP: Analyzing miRNA from Raw NGS Data to Quantification. PMID:33396959
isomiRs-Hidden Soldiers in the miRNA Regulatory Army, and How to Find Them? PMID:33396892
The Emerging Roles of Autophagy-Related MicroRNAs in Cancer. PMID:33390839
Epigenetic Aging and Colorectal Cancer: State of the Art and Perspectives for Future Research. PMID:33379143
Sex-specific effects of social defeat stress on miRNA expression in the anterior BNST. PMID:33358922
A Novel MicroRNA From the Translated Region of the Giardiavirus rdrp Gene Governs Virus Copy Number in Giardia duodenalis. PMID:33329426
The miR-199a/214 Cluster Controls Nephrogenesis and Vascularization in a Human Embryonic Stem Cell Model. PMID:33306987
A systems biology framework integrating GWAS and RNA-seq to shed light on the molecular basis of sperm quality in swine. PMID:33292187
The miRNA Content of Exosomes Released from the Glioma Microenvironment Can Affect Malignant Progression. PMID:33287106
Copy number gain of pro-inflammatory genes in patients with HBV-related acute-on-chronic liver failure. PMID:33261607
Identification of Recurrent Mutations in the microRNA-Binding Sites of B-Cell Lymphoma-Associated Genes in Follicular Lymphoma. PMID:33233721
Nanoparticle-complexed antimiRs for inhibiting tumor growth and metastasis in prostate carcinoma and melanoma. PMID:33228711
A "Lymphocyte MicroRNA Signature" as Predictive Biomarker of Immunotherapy Response and Plasma PD-1/PD-L1 Expression Levels in Patients with Metastatic Renal Cell Carcinoma: Pointing towards Epigenetic Reprogramming. PMID:33207823
Role of Non-Coding Variants in Brugada Syndrome. PMID:33202810
QIMCMDA: MiRNA-Disease Association Prediction by q-Kernel Information and Matrix Completion. PMID:33193744
Genome-Wide Differential DNA Methylation and miRNA Expression Profiling Reveals Epigenetic Regulatory Mechanisms Underlying Nitrogen-Limitation-Triggered Adaptation and Use Efficiency Enhancement in Allotetraploid Rapeseed. PMID:33182819
miR‑31 promotes tumorigenesis in ulcerative colitis‑associated neoplasia via downregulation of SATB2. PMID:33173968
Common schizophrenia risk variants are enriched in open chromatin regions of human glutamatergic neurons. PMID:33149216
Retrograde signaling by a mtDNA-encoded non-coding RNA preserves mitochondrial bioenergetics. PMID:33127975
LncRBase V.2: an updated resource for multispecies lncRNAs and ClinicLSNP hosting genetic variants in lncRNAs for cancer patients. PMID:33112702
Integrating multiple microarray dataset analysis and machine learning methods to reveal the key genes and regulatory mechanisms underlying human intervertebral disc degeneration. PMID:33083145
Importance of microRNAs in Skin Oncogenesis and Their Suitability as Agents and Targets for Topical Therapy. PMID:33080592
Long Non-coding RNAs Are Differentially Expressed After Different Exercise Training Programs. PMID:33071823
MIR2111-5 locus and shoot-accumulated mature miR2111 systemically enhance nodulation depending on HAR1 in Lotus japonicus. PMID:33060582
Discovery and validation of candidate genes for grain iron and zinc metabolism in pearl millet [Pennisetum glaucum (L.) R. Br.]. PMID:33024155
An Integrative miRNA-mRNA Expression Analysis Reveals Striking Transcriptomic Similarities between Severe Equine Asthma and Specific Asthma Endotypes in Humans. PMID:32998415
miR-452 Reverses Abnormal Glycosylation Modification of ERα and Estrogen Resistance in TNBC (Triple-Negative Breast Cancer) Through Targeting UGT1A1. PMID:32983995
Verbal memory dysfunction is associated with alterations in brain transcriptome in dominant temporal lobe epilepsy. PMID:32945555
Stumbling on elusive cargo: how isomiRs challenge microRNA detection and quantification, the case of extracellular vesicles. PMID:32944171
Identification of Biomarkers to Construct a Competing Endogenous RNA Network and Establishment of a Genomic-Clinicopathologic Nomogram to Predict Survival for Children with Rhabdoid Tumors of the Kidney. PMID:32908900
A role for microRNAs in the epigenetic control of sexually dimorphic gene expression in the human placenta. PMID:32901510
Cross-sectional study of human coding- and non-coding RNAs in progressive stages of Helicobacter pylori infection. PMID:32901043
Non-Coding RNA Databases in Cardiovascular Research. PMID:32887511
Delineating effect of corn microRNAs and matrix, ingested as whole food, on gut microbiota in a rodent model. PMID:32884688
Epigenetic influence of environmentally neurotoxic metals. PMID:32882300
Whole transcriptome analysis on blue light-induced eye damage. PMID:32821674
"Mind the Gap": Hi-C Technology Boosts Contiguity of the Globe Artichoke Genome in Low-Recombination Regions. PMID:32817122
Identification and characterization of miRNAs during early pregnancy in domestic sheep. PMID:32794198
Early diagnostic and prognostic value of serum exosomal miR-1246 in non-small cell lung cancer. PMID:32782678
High-Throughput Sequencing and Expression Analysis Suggest the Involvement of Pseudomonas putida RA-Responsive microRNAs in Growth and Development of Arabidopsis. PMID:32751751
Dynamical gene regulatory networks are tuned by transcriptional autoregulation with microRNA feedback. PMID:32737375
Circulating miR-16-5p, miR-92a-3p, and miR-451a in Plasma from Lung Cancer Patients: Potential Application in Early Detection and a Regulatory Role in Tumorigenesis Pathways. PMID:32726984
microRNA-seq of cartilage reveals an overabundance of miR-140-3p which contains functional isomiRs. PMID:32660984
Targeted sequencing of genes associated with the mismatch repair pathway in patients with endometrial cancer. PMID:32634176
IMPMD: An Integrated Method for Predicting Potential Associations Between miRNAs and Diseases. PMID:32581646
Circulating Levels of Brain-Enriched MicroRNAs Correlate with Neuron Specific Enolase after Cardiac Arrest-A Substudy of the Target Temperature Management Trial. PMID:32575355
Profiling cytotoxic microRNAs in pediatric and adult glioblastoma cells by high-content screening, identification, and validation of miR-1300. PMID:32555332
Computational analysis of microRNA-mediated interactions in SARS-CoV-2 infection. PMID:32547891
Draft genomes of two outcrossing wild rice, Oryza rufipogon and O. longistaminata, reveal genomic features associated with mating-system evolution. PMID:32537559
MicroRNAs Are Involved in Maize Immunity Against Fusarium verticillioides Ear Rot. PMID:32531477
The Role of Nutri(epi)genomics in Achieving the Body's Full Potential in Physical Activity. PMID:32517297
Whole genome resequencing of four Italian sweet pepper landraces provides insights on sequence variation in genes of agronomic value. PMID:32514106
The nuclear and mitochondrial genomes of Frieseomelitta varia - a highly eusocial stingless bee (Meliponini) with a permanently sterile worker caste. PMID:32493270
mmannot: How to improve small-RNA annotation? PMID:32463818
Clues of in vivo nuclear gene regulation by mitochondrial short non-coding RNAs. PMID:32427953
miRNA-145/miRNA-205 inhibits proliferation and invasion of uveal melanoma cells by targeting NPR1/CDC42. PMID:32420217
Identification of circular RNAs in porcine sperm and evaluation of their relation to sperm motility. PMID:32409652
Post-transcriptional regulation of several biological processes involved in latex production in Hevea brasiliensis. PMID:32391199
Rising Roles of Small Noncoding RNAs in Cotranscriptional Regulation: In Silico Study of miRNA and piRNA Regulatory Network in Humans. PMID:32365489
miR-21 protects against lipopolysaccharide-stimulated acute kidney injury and apoptosis by targeting CDK6. PMID:32355747
The draft genome sequence of an upland wild rice species, Oryza granulata. PMID:32350267
Data integration of 104 studies related with microRNA epigenetics revealed that miR-34 gene family is silenced by DNA methylation in the highest number of cancer types. PMID:32309547
Identification and expression analysis of miRNAs and elucidation of their role in salt tolerance in rice varieties susceptible and tolerant to salinity. PMID:32294092
Toxic-Metal-Induced Alteration in miRNA Expression Profile as a Proposed Mechanism for Disease Development. PMID:32272672
Reproductive tract extracellular vesicles are sufficient to transmit intergenerational stress and program neurodevelopment. PMID:32198406
miRNAs in the Diagnosis and Prognosis of Skin Cancer. PMID:32185171
COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis. PMID:32165660
Different MicroRNA Families Involved in Regulating High Temperature Stress Response during Cotton (Gossypium hirsutum L.) Anther Development. PMID:32074966
Graph regularized L2,1-nonnegative matrix factorization for miRNA-disease association prediction. PMID:32070280
OsmiR167a-targeted auxin response factors modulate tiller angle via fine-tuning auxin distribution in rice. PMID:32061119
MicroRNAs regulate granulosa cells apoptosis and follicular development - A review. PMID:32054175
Identification of potential microRNAs and their targets in promoting gefitinib resistance by integrative network analysis. PMID:32030273
RATEmiRs: the rat atlas of tissue-specific and enriched miRNAs for discerning baseline expression exclusivity of candidate biomarkers. PMID:32009518
The high-quality genome of diploid strawberry (Fragaria nilgerrensis) provides new insights into anthocyanin accumulation. PMID:32003918
Small RNA Bidirectional Crosstalk During the Interaction Between Wheat and Zymoseptoria tritici. PMID:31969895
miRNAs as Influencers of Cell-Cell Communication in Tumor Microenvironment. PMID:31952362
Signatures of circulating microRNA in four sarcoma subtypes. PMID:31949491
Computational screening of miRNAs and their targets in leaves of Hypericum spp. by transcriptome-mining: a pilot study. PMID:31938871
The interaction of Multiple Sclerosis risk loci with Epstein-Barr virus phenotypes implicates the virus in pathogenesis. PMID:31932685
Post-transcriptional regulation of Rad51c by miR-222 contributes cellular transformation. PMID:31923208
Multi-level transcriptome sequencing identifies COL1A1 as a candidate marker in human heart failure progression. PMID:31902369
A network view of microRNA and gene interactions in different pathological stages of colon cancer. PMID:31888617
Association Between Side Effects and Blood microRNA Expression Levels and Their Targeted Pathways in Patients With Major Depressive Disorder Treated by a Selective Serotonin Reuptake Inhibitor, Escitalopram: A CAN-BIND-1 Report. PMID:31819986
Transcriptome-wide miRNA identification of Bacopa monnieri: a cross-kingdom approach. PMID:31797719
Molecular subgrouping of primary pineal parenchymal tumors reveals distinct subtypes correlated with clinical parameters and genetic alterations. PMID:31768671
MicroRNAs in Vitis vinifera cv. Chardonnay Are Differentially Expressed in Response to Diaporthe Species. PMID:31703418
miRNAs derived from cancer-associated fibroblasts in colorectal cancer. PMID:31702390
'One DB to rule them all'-the RING: a Regulatory INteraction Graph combining TFs, genes/proteins, SNPs, diseases and drugs. PMID:31682269
MicroRNA-10a-5p regulates macrophage polarization and promotes therapeutic adipose tissue remodeling. PMID:31668395
Epigenetic Biomarkers in Cardiovascular Diseases. PMID:31649728
Deep Small RNA Sequencing of BRAF V600E Mutated Papillary Thyroid Carcinoma With Lymph Node Metastasis. PMID:31649724
Dynamics of microRNA expression during mouse prenatal development. PMID:31645363
Screening for differentially‑expressed microRNA biomarkers in Saudi colorectal cancer patients by small RNA deep sequencing. PMID:31638163
Long non-coding RNA transcribed from pseudogene PPIAP43 is associated with radiation sensitivity of small cell lung cancer cells. PMID:31611966
Epigenetic Regulation of Innate Immunity by microRNAs. PMID:31557989
Conservation and novelty in the microRNA genomic landscape of hyperdiverse cichlid fishes. PMID:31554838
Automatic discovery of 100-miRNA signature for cancer classification using ensemble feature selection. PMID:31533612
A network embedding-based multiple information integration method for the MiRNA-disease association prediction. PMID:31510919
Genome-wide hairpins datasets of animals and plants for novel miRNA prediction. PMID:31453279
Comparative Identification of MicroRNAs in Apis cerana cerana Workers' Midguts in Responseto Nosema ceranae Invasion. PMID:31438582
Differentially Expressed MiRNAs and tRNA Genes Affect Host Homeostasis During Highly Pathogenic Porcine Reproductive and Respiratory Syndrome Virus Infections in Young Pigs. PMID:31428130
A chromosome-anchored eggplant genome sequence reveals key events in Solanaceae evolution. PMID:31409808
miR-140-5p Attenuates Neuroinflammation and Brain Injury in Rats Following Intracerebral Hemorrhage by Targeting TLR4. PMID:31376096
Adverse early-life environment impairs postnatal lung development in mice. PMID:31373541
Time-Resolved Small RNA Sequencing Unravels the Molecular Principles of MicroRNA Homeostasis. PMID:31350118
AGO CLIP Reveals an Activated Network for Acute Regulation of Brain Glutamate Homeostasis in Ischemic Stroke. PMID:31340158
Microfluidic epigenomic mapping technologies for precision medicine. PMID:31338502
Harnessing host-virus evolution in antiviral therapy and immunotherapy. PMID:31312450
Identifying microRNAs and Their Editing Sites in Macaca mulatta. PMID:31284505
Accurate and Efficient Mapping of the Cross-Linked microRNA-mRNA Duplex Reads. PMID:31271968
Comparative genome analysis of the SPL gene family reveals novel evolutionary features in maize. PMID:31271590
Beyond the seed: structural basis for supplementary microRNA targeting by human Argonaute2. PMID:31268608
Kruppel-like factor 6 and miR-223 signaling axis regulates macrophage-mediated inflammation. PMID:31262200
Construction and analysis of degradome-dependent microRNA regulatory networks in soybean. PMID:31253085
miRBaseMiner, a tool for investigating miRBase content. PMID:31251108
Full-length transcriptome sequencing and methyl jasmonate-induced expression profile analysis of genes related to patchoulol biosynthesis and regulation in Pogostemon cablin. PMID:31221095
Identification of microRNAs and genes as biomarkers of atrial fibrillation using a bioinformatics approach. PMID:31218935
miR-23a-5p inhibits cell proliferation and invasion in pancreatic ductal adenocarcinoma by suppressing ECM1 expression. PMID:31217868
miR-22 enhances the radiosensitivity of small-cell lung cancer by targeting the WRNIP1. PMID:31190355
Deciphering the non-coding RNA-level response to arsenic stress in rice (Oryza sativa). PMID:31187662
Historical contingency shapes adaptive radiation in Antarctic fishes. PMID:31182814
Challenges in microRNAs' targetome prediction and validation. PMID:31169173
Scenario and future prospects of microRNAs in gastric cancer: A review. PMID:31168337
Comprehensive transcriptome analysis reveals genes potentially involved in isoflavone biosynthesis in Pueraria thomsonii Benth. PMID:31163077
A comparison of RNA extraction and sequencing protocols for detection of small RNAs in plasma. PMID:31159762
Interpreting the MicroRNA-15/107 family: interaction identification by combining network based and experiment supported approach. PMID:31151434
Dual Epigenetic Regulation of ERα36 Expression in Breast Cancer Cells. PMID:31146345
Mature sperm small-RNA profile in the sparrow: implications for transgenerational effects of age on fitness. PMID:31139435
Clinical and biological impact of miR-18a expression in breast cancer after neoadjuvant chemotherapy. PMID:31115881
Bipartite Heterogeneous Network Method Based on Co-neighbor for MiRNA-Disease Association Prediction. PMID:31080459
miR-494 induces EndMT and promotes the development of HCC (Hepatocellular Carcinoma) by targeting SIRT3/TGF-β/SMAD signaling pathway. PMID:31076630
ALG-1 Influences Accurate mRNA Splicing Patterns in the Caenorhabditis elegans Intestine and Body Muscle Tissues by Modulating Splicing Factor Activities. PMID:31073019
Computational identification of miRNA and their cross kingdom targets from expressed sequence tags of Ocimum basilicum. PMID:31066002
MicroRNA profiling of mouse liver in response to DENV-1 infection by deep sequencing. PMID:31065454
Transcriptional Regulation of the Glutamate/GABA/Glutamine Cycle in Adult Glia Controls Motor Activity and Seizures in Drosophila. PMID:31064860
A RNA-Seq Analysis to Describe the Boar Sperm Transcriptome and Its Seasonal Changes. PMID:31040860
Panoramic Visualization of Circulating MicroRNAs Across Neurodegenerative Diseases in Humans. PMID:31037649
Comprehensive analysis of miRNA and protein profiles within exosomes derived from canine lymphoid tumour cell lines. PMID:31034520
Transcriptome Alterations in Liver Metastases of Colorectal Cancer After Acquired Resistance to Cetuximab. PMID:31018951
Adipokines Regulate the Expression of Tumor-Relevant MicroRNAs. PMID:30999294
Exosomal miRNAs as Novel Pharmacodynamic Biomarkers for Cancer Chemopreventive Agent Early Stage Treatments in Chemically Induced Mouse Model of Lung Squamous Cell Carcinoma. PMID:30987362
Identification of conserved miRNA molecules in einkorn wheat (Triticum monococcum subsp. monococcum) by using small RNA sequencing analysis. PMID:30983871
Network and Pathway-Based Analysis of Single-Nucleotide Polymorphism of miRNA in Temporal Lobe Epilepsy. PMID:30968344
miRNA signatures in childhood sarcomas and their clinical implications. PMID:30949930
Identification of tumor suppressor miRNAs by integrative miRNA and mRNA sequencing of matched tumor-normal samples in lung adenocarcinoma. PMID:30913346
Impact of Polypharmacy on Candidate Biomarker miRNomes for the Diagnosis of Fibromyalgia and Myalgic Encephalomyelitis/Chronic Fatigue Syndrome: Striking Back on Treatments. PMID:30889846
Improved Pre-miRNAs Identification Through Mutual Information of Pre-miRNA Sequences and Structures. PMID:30858864
Grape seed proanthocyanidins inhibit proliferation of pancreatic cancer cells by modulating microRNA expression. PMID:30854052
Comparative genomics reveals origin of MIR159A-MIR159B paralogy, and complexities of PTGS interaction between miR159 and target GA-MYBs in Brassicaceae. PMID:30840147
Discovery of the Oncogenic Parp1, a Target of bcr-abl and a Potential Therapeutic, in mir-181a/PPFIA1 Signaling Pathway. PMID:30825668
An estimate of the total number of true human miRNAs. PMID:30820533
A splice-site variant in the lncRNA gene RP1-140A9.1 cosegregates in the large Volkmann cataract family. PMID:30820140
Gene-Specific Intron Retention Serves as Molecular Signature that Distinguishes Melanoma from Non-Melanoma Cancer Cells in Greek Patients. PMID:30795533
Interplay between miRNAs and host genes and their role in cancer. PMID:30785618
High-throughput sequencing and differential expression analysis of miRNAs in response to Brassinosteroid treatment in Arabidopsis thaliana. PMID:30783808
Alterations in tissue microRNA after heat stress in the conscious rat: potential biomarkers of organ-specific injury. PMID:30770735
Small RNAs in Rat Sperm Are a Predictive and Sensitive Biomarker of Exposure to the Testicular Toxicant Ethylene Glycol Monomethyl Ether. PMID:30768127
miPIE: NGS-based Prediction of miRNA Using Integrated Evidence. PMID:30733467
Adaboost-SVM-based probability algorithm for the prediction of all mature miRNA sites based on structured-sequence features. PMID:30728425
Diff isomiRs: Large-scale detection of differential isomiRs for understanding non-coding regulated stress omics in plants. PMID:30723229
miR-499-5p Attenuates Mitochondrial Fission and Cell Apoptosis via p21 in Doxorubicin Cardiotoxicity. PMID:30719033
Transcriptomic analyses reveal groups of co-expressed, syntenic lncRNAs in four species of the genus Caenorhabditis. PMID:30691342
Tissue-specific epigenetics of atherosclerosis-related ANGPT and ANGPTL genes. PMID:30688091
HIV-1 infection increases microRNAs that inhibit Dicer1, HRB and HIV-EP2, thereby reducing viral replication. PMID:30682089
MiR-194 regulates nasopharyngeal carcinoma progression by modulating MAP3K3 expression. PMID:30652073
Evolution of an X-Linked miRNA Family Predominantly Expressed in Mammalian Male Germ Cells. PMID:30649414
MicroRNA Cross-Involvement in Autism Spectrum Disorders and Atopic Dermatitis: A Literature Review. PMID:30646527
Expanding the miRNA Repertoire in Atlantic Salmon; Discovery of IsomiRs and miRNAs Highly Expressed in Different Tissues and Developmental Stages. PMID:30641951
Interpreting Non-coding Genetic Variation in Multiple Sclerosis Genome-Wide Associated Regions. PMID:30619471
A miRNA Host Response Signature Accurately Discriminates Acute Respiratory Infection Etiologies. PMID:30619110
Discovering functional impacts of miRNAs in cancers using a causal deep learning model. PMID:30598118
miRBaseConverter: an R/Bioconductor package for converting and retrieving miRNA name, accession, sequence and family information in different versions of miRBase. PMID:30598108
Identification of pre-microRNAs by characterizing their sequence order evolution information and secondary structure graphs. PMID:30598066
Simulated climate warming and mitochondrial haplogroup modulate testicular small non-coding RNA expression in the neotropical pseudoscorpion, Cordylochernes scorpioides. PMID:30595847
Characterization of miRNA profiles in the mammary tissue of dairy cattle in response to heat stress. PMID:30593264
Let-7a inhibits osteosarcoma cell growth and lung metastasis by targeting Aurora-B. PMID:30568492
Integrated microRNA and mRNA analysis in the pathogenic filamentous fungus Trichophyton rubrum. PMID:30547762
A heterogeneous label propagation approach to explore the potential associations between miRNA and disease. PMID:30537965
Multiple Sequence Alignments Enhance Boundary Definition of RNA Structures. PMID:30518121
Expression levels of miR-34-family microRNAs are associated with TP53 mutation status in head and neck squamous cell carcinoma. PMID:30515607
Prediction of plant-derived xenomiRs from plant miRNA sequences using random forest and one-dimensional convolutional neural network models. PMID:30477446
BioGraph: a web application and a graph database for querying and analyzing bioinformatics resources. PMID:30458802
Small RNA-Seq reveals novel miRNAs shaping the transcriptomic identity of rat brain structures. PMID:30456375
RATEmiRs: the rat atlas of tissue-specific and enriched miRNAs database. PMID:30453895
Hotspots in the genomic architecture of field drought responses in wheat as breeding targets. PMID:30446876
miRNA Mediated Noise Making of 3'UTR Mutations in Cancer. PMID:30424545
miRBase: from microRNA sequences to function. PMID:30423142
Multidimensional communication of microRNAs and long non-coding RNAs in lung cancer. PMID:30417217
Lung fibroblasts express a miR-19a-19b-20a sub-cluster to suppress TGF-β-associated fibroblast activation in murine pulmonary fibrosis. PMID:30413725
MicroR408 regulates defense response upon wounding in sweet potato. PMID:30403812
Integrative analysis of microRNA and mRNA expression profiles in fetal rat model with anorectal malformation. PMID:30386697
Diverse RNA interference strategies in early-branching metazoans. PMID:30382896
Identification and characterization of skin color microRNAs in Koi carp (Cyprinus carpio L.) by Illumina sequencing. PMID:30373521
CircRNA-associated ceRNA network reveals ErbB and Hippo signaling pathways in hypopharyngeal cancer. PMID:30365065
MicroRNA 199a and the eNOS (Endothelial NO Synthase)/NO Pathway. PMID:30354226
MiR-200b attenuates IL-6 production through IKKβ and ZEB1 in human gingival fibroblasts. PMID:30306207
Framework for microRNA variant annotation and prioritization using human population and disease datasets. PMID:30302893
Uncovering association networks through an eQTL analysis involving human miRNAs and lincRNAs. PMID:30301969
Expression of the miR-150 tumor suppressor is restored by and synergizes with rapamycin in a human leukemia T-cell line. PMID:30269036
Role of miR-223 in the pathophysiology of liver diseases. PMID:30258086
Identification of six key miRNAs associated with breast cancer through screening large-scale microarray data. PMID:30250531
Characterization and comparative analysis of microRNAs in the rice pest Sogatella furcifera. PMID:30248141
Multi-Step Regulation of the TLR4 Pathway by the miR-125a~99b~let-7e Cluster. PMID:30245693
Elevated carbon dioxide and drought modulate physiology and storage-root development in sweet potato by regulating microRNAs. PMID:30244303
Transcriptional fates of human-specific segmental duplications in brain. PMID:30228200
Dual-layer transposon repression in heads of Drosophila melanogaster. PMID:30217866
Identification of novel mouse and rat CB1R isoforms and in silico modeling of human CB1R for peripheral cannabinoid therapeutics. PMID:30202012
Predicting microRNA-disease associations using bipartite local models and hubness-aware regression. PMID:30196756
Genome-wide microRNA analysis of HPV-positive self-samples yields novel triage markers for early detection of cervical cancer. PMID:30192375
Genome-wide identification of clusters of predicted microRNA binding sites as microRNA sponge candidates. PMID:30142196
Identifying and Exploiting Potential miRNA-Disease Associations With Neighborhood Regularized Logistic Matrix Factorization. PMID:30131824
Identification and verification of differentially expressed microRNAs and their target genes for the diagnosis of esophageal cancer. PMID:30127973
RNA Structure Elements Conserved between Mouse and 59 Other Vertebrates. PMID:30071678
Genome-wide comparative analysis in Solanaceous species reveals evolution of microRNAs targeting defense genes in Capsicum spp. PMID:30060137
Heterogeneity and interplay of the extracellular vesicle small RNA transcriptome and proteome. PMID:30018314
MicroRNA-539 inhibits colorectal cancer progression by directly targeting SOX4. PMID:30013665
Identification of miRNAs and their targets in regulating tuberous root development in radish using small RNA and degradome analyses. PMID:30003000
A comprehensive review of web-based resources of non-coding RNAs for plant science research. PMID:29989090
Micro RNA clusters in maternal plasma are associated with preterm birth and infant outcomes. PMID:29949620
StarSeeker: an automated tool for mature duplex microRNA sequence identification based on secondary structure modeling of precursor molecule. PMID:29946534
Blood Serum From Head and Neck Squamous Cell Carcinoma Patients Induces Altered MicroRNA and Target Gene Expression Profile in Treated Cells. PMID:29942793
Tightly integrated genomic and epigenomic data mining using tensor decomposition. PMID:29939222
Motifome comparison between modern human, Neanderthal and Denisovan. PMID:29914355
Loss of RNA-Directed DNA Methylation in Maize Chromomethylase and DDM1-Type Nucleosome Remodeler Mutants. PMID:29884624
The Glucose-Regulated MiR-483-3p Influences Key Signaling Pathways in Cancer. PMID:29867024
MicroRNA Silencing by DNA Methylation in Human Cancer: a Literature Analysis. PMID:29861414
MicroRNA-17 and the prognosis of human carcinomas: a systematic review and meta-analysis. PMID:29858404
Comprehensive identification of microRNA arm selection preference in lung cancer: miR-324-5p and -3p serve oncogenic functions in lung cancer. PMID:29844840
microRNA-124-3p inhibits the progression of congenital hypothyroidism via targeting programmed cell death protein 6. PMID:29805523
Microarray analysis of miRNA expression profiles following whole body irradiation in a mouse model. PMID:29799276
MicroRNAs as Potential Serum Biomarkers for Early Detection of Ectopic Pregnancy. PMID:29796356
Human microRNAs preferentially target genes with intermediate levels of expression and its formation by mammalian evolution. PMID:29795674
miR172 downregulates the translation of cleistogamy 1 in barley. PMID:29790929
Well-Annotated microRNAomes Do Not Evidence Pervasive miRNA Loss. PMID:29788279
MicroRNAs as potential therapeutics to enhance chemosensitivity in advanced prostate cancer. PMID:29777112
A Multi-Omics Database for Parasitic Nematodes and Trematodes. PMID:29761465
PbrmiR397a regulates lignification during stone cell development in pear fruit. PMID:29754465
Assessing the functional association of intronic miRNAs with their host genes. PMID:29752351
Genome-Wide Identification of MicroRNAs in Response to Cadmium Stress in Oilseed Rape (Brassica napus L.) Using High-Throughput Sequencing. PMID:29748489
Evaluation of commercially available small RNASeq library preparation kits using low input RNA. PMID:29728066
psRNATarget: a plant small RNA target analysis server (2017 release). PMID:29718424
An integrative analysis of non-coding regulatory DNA variations associated with autism spectrum disorder. PMID:29703944
Identification of substrates of the small RNA methyltransferase Hen1 in mouse spermatogonial stem cells and analysis of its methyl-transfer domain. PMID:29703750
MicroRNAs in hereditary and sporadic premature aging syndromes and other laminopathies. PMID:29696758
Effects of miR‑138‑5p and miR‑204‑5p on the migration and proliferation of gastric cancer cells by targeting EGFR. PMID:29693184
Global Similarity Method Based on a Two-tier Random Walk for the Prediction of microRNA-Disease Association. PMID:29691434
Integrated Analysis Reveals That miR-193b, miR-671, and TREM-1 Correlate With a Good Response to Treatment of Human Localized Cutaneous Leishmaniasis Caused by Leishmania braziliensis. PMID:29670621
Comparative microRNA-seq Analysis Depicts Candidate miRNAs Involved in Skin Color Differentiation in Red Tilapia. PMID:29659520
High Percentage of Isomeric Human MicroRNA and Their Analytical Challenges. PMID:29657271
Micro-RNA Feedback Loops Modulating the Calcineurin/NFAT Signaling Pathway. PMID:29657261
Migration/Invasion of Malignant Gliomas and Implications for Therapeutic Treatment. PMID:29642503
Comprehensive analysis of blood cells and plasma identifies tissue-specific miRNAs as potential novel circulating biomarkers in cattle. PMID:29636028
MicroRNA-216a Inhibits NF-κB-Mediated Inflammatory Cytokine Production in Teleost Fish by Modulating p65. PMID:29632247
ELLPMDA: Ensemble learning and link prediction for miRNA-disease association prediction. PMID:29619882
Fishing Into the MicroRNA Transcriptome. PMID:29616080
Identification of cold stress responsive microRNAs in two winter turnip rape (Brassica rapa L.) by high throughput sequencing. PMID:29587648
Target-enrichment sequencing for detailed characterization of small RNAs. PMID:29565901
Systematic Discovery of RNA Binding Proteins that Regulate MicroRNA Levels. PMID:29547715
The Oncogenic Relevance of miR-17-92 Cluster and Its Paralogous miR-106b-25 and miR-106a-363 Clusters in Brain Tumors. PMID:29547527
Comprehensive analysis of small RNAs expressed in developing male strobili of Cryptomeria japonica. PMID:29529051
GRMDA: Graph Regression for MiRNA-Disease Association Prediction. PMID:29515453
Association of miR-548c-5p, miR-7-5p, miR-210-3p, miR-128-3p with recurrence in systemically untreated breast cancer. PMID:29507672
Circulating miRNAs, isomiRs and small RNA clusters in human plasma and breast milk. PMID:29505615
Hippocampal MicroRNAs Respond to Administration of Antidepressant Fluoxetine in Adult Mice. PMID:29495532
Expression and function of microRNA-9 in the mid-hindbrain area of embryonic chick. PMID:29471810
A large-scale multiomics analysis of wheat stem solidness and the wheat stem sawfly feeding response, and syntenic associations in barley, Brachypodium, and rice. PMID:29470681
Functional Redundancy of DICER Cofactors TARBP2 and PRKRA During Murine Embryogenesis Does Not Involve miRNA Biogenesis. PMID:29467169
Downregulation of MicroRNA eca-mir-128 in Seminal Exosomes and Enhanced Expression of CXCL16 in the Stallion Reproductive Tract Are Associated with Long-Term Persistence of Equine Arteritis Virus. PMID:29444949
microRNA expression profiles of scar and normal tissue from patients with posterior urethral stricture caused by pelvic fracture urethral distraction defects. PMID:29436608
Constitutive Expression of miR408 Improves Biomass and Seed Yield in Arabidopsis. PMID:29422907
SSCMDA: spy and super cluster strategy for MiRNA-disease association prediction. PMID:29416734
Mirna biogenesis pathway is differentially regulated during adipose derived stromal/stem cell differentiation. PMID:29411671
MicroRNAs and Presbycusis. PMID:29392088
LncNetP, a systematical lncRNA prioritization approach based on ceRNA and disease phenotype association assumptions. PMID:29383105
Novel evidence for a PIWI-interacting RNA (piRNA) as an oncogenic mediator of disease progression, and a potential prognostic biomarker in colorectal cancer. PMID:29382334
RNase H2-Dependent Polymerase Chain Reaction and Elimination of Confounders in Sample Collection, Storage, and Analysis Strengthen Evidence That microRNAs in Bovine Milk Are Bioavailable in Humans. PMID:29378054
Developmental profiling of microRNAs in the human embryonic inner ear. PMID:29373586
PTRE-seq reveals mechanism and interactions of RNA binding proteins and miRNAs. PMID:29352242
Non-coding RNAs and plant male sterility: current knowledge and future prospects. PMID:29332167
Tissue and serum microRNA profile of oral squamous cell carcinoma patients. PMID:29330429
MicroRNA co-expression networks exhibit increased complexity in pancreatic ductal compared to Vater's papilla adenocarcinoma. PMID:29285254
miRNA-36 inhibits KSHV, EBV, HSV-2 infection of cells via stifling expression of interferon induced transmembrane protein 1 (IFITM1). PMID:29269892
RNAStructuromeDB: A genome-wide database for RNA structural inference. PMID:29222504
A tRNA fragment, tRF5-Glu, regulates BCAR3 expression and proliferation in ovarian cancer cells. PMID:29221134
Integrated mRNA and microRNA transcriptome analysis reveals miRNA regulation in response to PVA in potato. PMID:29208970
Comparative Analysis of Cotton Small RNAs and Their Target Genes in Response to Salt Stress. PMID:29206160
Novel circulating microRNAs expression profile in colon cancer: a pilot study. PMID:29187262
Genome-Wide Development of MicroRNA-Based SSR Markers in Medicago truncatula with Their Transferability Analysis and Utilization in Related Legume Species. PMID:29156589
EPMDA: an expression-profile based computational model for microRNA-disease association prediction. PMID:29152061
MicroRNA expression patterns in canine mammary cancer show significant differences between metastatic and non-metastatic tumours. PMID:29115935
Regulatory network involving miRNAs and genes in serous ovarian carcinoma. PMID:29113276
A deep ensemble model to predict miRNA-disease association. PMID:29101378
Plasma exosome miR-196a and miR-1246 are potential indicators of localized pancreatic cancer. PMID:29100367
Protein-coding genes, long non-coding RNAs combined with microRNAs as a novel clinical multi-dimension transcriptome signature to predict prognosis in ovarian cancer. PMID:29069830
Repertoire of noncoding RNAs in corpus luteum of early pregnancy in buffalo (Bubalus bubalis). PMID:29062204
Computational tools for plant small RNA detection and categorization. PMID:29059285
In silico analysis of the grapefruit sRNAome, transcriptome and gene regulation in response to CTV-CDVd co-infection. PMID:29058618
Human Argonaute3 has slicer activity. PMID:29040713
Assembly and Annotation of Transcriptome Provided Evidence of miRNA Mobility between Wheat and Wheat Stem Sawfly. PMID:29038661
Comparative analysis of miRNA expression during the development of insects of different metamorphosis modes and germ-band types. PMID:29020923
Identification of common oncogenic and early developmental pathways in the ovarian carcinomas controlling by distinct prognostically significant microRNA subsets. PMID:28984201
Identification of genome-wide non-canonical spliced regions and analysis of biological functions for spliced sequences using Read-Split-Fly. PMID:28984182
Noncoding RNA in drug resistant sarcoma. PMID:28978183
TDP-43 regulates cancer-associated microRNAs. PMID:28952053
In Silico Analysis of Small RNAs Suggest Roles for Novel and Conserved miRNAs in the Formation of Epigenetic Memory in Somatic Embryos of Norway Spruce. PMID:28943851
Therapeutic miRNA and siRNA: Moving from Bench to Clinic as Next Generation Medicine. PMID:28918016
RNA Sequencing and Co-expressed Long Non-coding RNA in Modern and Wild Wheats. PMID:28878329
A miRNA catalogue and ncRNA annotation of the short-living fish Nothobranchius furzeri. PMID:28874118
Neurotransmitter Switching Regulated by miRNAs Controls Changes in Social Preference. PMID:28867550
DRMDA: deep representations-based miRNA-disease association prediction. PMID:28857494
Functional analysis of a novel, thyroglobulin-embedded microRNA gene deregulated in papillary thyroid carcinoma. PMID:28855631
Transposable Element Misregulation Is Linked to the Divergence between Parental piRNA Pathways in Drosophila Hybrids. PMID:28854624
NEAT1 scaffolds RNA-binding proteins and the Microprocessor to globally enhance pri-miRNA processing. PMID:28846091
MicroRNA exhibit altered expression in the inflamed colonic mucosa of ulcerative colitis patients. PMID:28839432
Identification of protoplast-isolation responsive microRNAs in Citrus reticulata Blanco by high-throughput sequencing. PMID:28829800
Polyphenolic Nutrients in Cancer Chemoprevention and Metastasis: Role of the Epithelial-to-Mesenchymal (EMT) Pathway. PMID:28825675
snoRNA and piRNA expression levels modified by tobacco use in women with lung adenocarcinoma. PMID:28817650
The use of high-throughput small RNA sequencing reveals differentially expressed microRNAs in response to aster yellows phytoplasma-infection in Vitis vinifera cv. 'Chardonnay'. PMID:28813447
SNPs, linkage disequilibrium, and chronic mountain sickness in Tibetan Chinese. PMID:28770234
Tough decoy targeting of predominant let-7 miRNA species in adult human hematopoietic cells. PMID:28768505
Genomic innovations, transcriptional plasticity and gene loss underlying the evolution and divergence of two highly polyphagous and invasive Helicoverpa pest species. PMID:28756777
Integrated regulatory network reveals the early salt tolerance mechanism of Populus euphratica. PMID:28754917
Improving the Quality of Positive Datasets for the Establishment of Machine Learning Models for pre-microRNA Detection. PMID:28753538
Rare Genome-Wide Copy Number Variation and Expression of Schizophrenia in 22q11.2 Deletion Syndrome. PMID:28750581
A step-by-step microRNA guide to cancer development and metastasis. PMID:28748501
Unraveling multifaceted contributions of small regulatory RNAs to photomorphogenic development in Arabidopsis. PMID:28738828
Improved low-rank matrix recovery method for predicting miRNA-disease association. PMID:28729528
Genome-wide Identification and Characterization of Natural Antisense Transcripts by Strand-specific RNA Sequencing in Ganoderma lucidum. PMID:28720793
Genome reconstruction in Cynara cardunculus taxa gains access to chromosome-scale DNA variation. PMID:28717205
Biological Involvement of MicroRNAs in Proliferative Vitreoretinopathy. PMID:28706757
Bias in recent miRBase annotations potentially associated with RNA quality issues. PMID:28701729
A Tiny RNA that Packs a Big Punch: The Critical Role of a Viral miR-155 Ortholog in Lymphomagenesis in Marek's Disease. PMID:28694799
Allelic Interactions among Pto-MIR475b and Its Four Target Genes Potentially Affect Growth and Wood Properties in Populus. PMID:28680433
miR‑199a‑3p is involved in the pathogenesis and progression of diabetic neuropathy through downregulation of SerpinE2. PMID:28677735
MicroRNA-196 Regulates HOX Gene Expression in Human Gluteal Adipose Tissue. PMID:28649807
Evolution of microRNA in primates. PMID:28640911
Comparative miRomics of Salt-Tolerant and Salt-Sensitive Rice. PMID:28637931
Identification, Characterization, and Functional Validation of Drought-responsive MicroRNAs in Subtropical Maize Inbreds. PMID:28626466
Visualization and Analysis of MicroRNAs within KEGG Pathways using VANESA. PMID:28609293
Mechanistic roles of microRNAs in hepatocarcinogenesis: A study of thioacetamide with multiple doses and time-points of rats. PMID:28596526
Network of microRNA, transcription factors, target genes and host genes in human mesothelioma. PMID:28587377
A sketch of known and novel MYCN-associated miRNA networks in neuroblastoma. PMID:28586032
Construction and analyses of the microRNA-target gene differential regulatory network in thyroid carcinoma. PMID:28570571
Transcriptome-microRNA analysis of Sarcoptes scabiei and host immune response. PMID:28542251
MiR-277/4989 regulate transcriptional landscape during juvenile to adult transition in the parasitic helminth Schistosoma mansoni. PMID:28542189
Circulating microRNA-214 and -126 as potential biomarkers for canine neoplastic disease. PMID:28536479
MicroRNAs 146a/b-5 and 425-3p and 24-3p are markers of antidepressant response and regulate MAPK/Wnt-system genes. PMID:28530238
Cancer-derived Circulating MicroRNAs Promote Tumor Angiogenesis by Entering Dendritic Cells to Degrade Highly Complementary MicroRNAs. PMID:28529626
MicroRNA-204 suppressed proliferation and motility capacity of human hepatocellular carcinoma via directly targeting zinc finger E-box binding homeobox 2. PMID:28521482
Transcriptome Profiling of Wheat Inflorescence Development from Spikelet Initiation to Floral Patterning Identified Stage-Specific Regulatory Genes. PMID:28515146
De novo Transcriptome Profiling of Flowers, Flower Pedicels and Pods of Lupinus luteus (Yellow Lupine) Reveals Complex Expression Changes during Organ Abscission. PMID:28512462
Putative roles as oncogene or tumour suppressor of the Mid-clustered microRNAs in Gallid alphaherpesvirus 2 (GaHV2) induced Marek's disease lymphomagenesis. PMID:28510513
Food restriction increase the expression of mTORC1 complex genes in the skeletal muscle of juvenile pacu (Piaractus mesopotamicus). PMID:28505179
Is the Hepatic Factor a miRNA that Maintains the Integrity of Pulmonary Microvasculature by Inhibiting the Vascular Endothelial Growth Factor? PMID:28494714
Comparative transcriptomics in human and mouse. PMID:28479595
Global gene expression profiling related to temperature-sensitive growth abnormalities in interspecific crosses between tetraploid wheat and Aegilops tauschii. PMID:28463975
Identification of active miRNA promoters from nuclear run-on RNA sequencing. PMID:28460090
SPARC overexpression alters microRNA expression profiles involved in tumor progression. PMID:28435518
Genome-wide survey of miRNAs and their evolutionary history in the ascidian, Halocynthia roretzi. PMID:28427349
Genome-wide identification and characterization of miRNAome from tomato (Solanum lycopersicum) roots and root-knot nematode (Meloidogyne incognita) during susceptible interaction. PMID:28426683
Identification and characterization of L1-specific endo-siRNAs essential for early embryonic development in pig. PMID:28423565
Next-generation sequencing reveals microRNA markers of adrenocortical tumors malignancy. PMID:28423361
Prognostic role of microRNAs in human gastrointestinal cancer: A systematic review and meta-analysis. PMID:28402940
Cryptochrome 2 extensively regulates transcription of the chloroplast genome in tomato. PMID:28396831
Lirex: A Package for Identification of Long Inverted Repeats in Genomes. PMID:28392477
MicroRNAs Associated with Caste Determination and Differentiation in a Primitively Eusocial Insect. PMID:28361900
The microRNA repertoire of Tibetan naked carp Gymnocypris przewalskii: A case study in Schizothoracinae fish on the Tibetan Plateau. PMID:28358922
MicroRNA-149 targets specificity protein 1 to suppress human tongue squamous cell carcinoma cell proliferation and motility. PMID:28356969
PBMDA: A novel and effective path-based computational model for miRNA-disease association prediction. PMID:28339468
Rapid Evolution of microRNA Loci in the Brown Algae. PMID:28338896
Inhibition of fat cell differentiation in 3T3-L1 pre-adipocytes by all-trans retinoic acid: Integrative analysis of transcriptomic and phenotypic data. PMID:28331816
Association between hypoxic volume and underlying hypoxia-induced gene expression in oropharyngeal squamous cell carcinoma. PMID:28324887
miR319, miR390, and miR393 Are Involved in Aluminum Response in Flax (Linum usitatissimum L.). PMID:28299328
GEAR: A database of Genomic Elements Associated with drug Resistance. PMID:28294141
MicroRNA categorization using sequence motifs and k-mers. PMID:28292266
MicroRNA-based Regulation of Picornavirus Tropism. PMID:28287517
Phase 2 study of circulating microRNA biomarkers in castration-resistant prostate cancer. PMID:28278515
GuideScan software for improved single and paired CRISPR guide RNA design. PMID:28263296
Scalable Design of Paired CRISPR Guide RNAs for Genomic Deletion. PMID:28253259
Inducible microRNA-214 contributes to the suppression of NF-κB-mediated inflammatory response via targeting myd88 gene in fish. PMID:28235799
Altered expression profiles of microRNA families during de-etiolation of maize and rice leaves. PMID:28235420
MicroRNAs in the Pathobiology and Therapy of Atherosclerosis. PMID:28232017
Role of miRNAs in human disease and inborn errors of metabolism. PMID:28229250
MicroRNAs: effective elements in ear-related diseases and hearing loss. PMID:28224282
The miRNAome of Catharanthus roseus: identification, expression analysis, and potential roles of microRNAs in regulation of terpenoid indole alkaloid biosynthesis. PMID:28223695
MINTmap: fast and exhaustive profiling of nuclear and mitochondrial tRNA fragments from short RNA-seq data. PMID:28220888
Defining age- and lactocrine-sensitive elements of the neonatal porcine uterine microRNA-mRNA interactome. PMID:28203709
MiRNATIP: a SOM-based miRNA-target interactions predictor. PMID:28185545
TEG-1 CD2BP2 controls miRNA levels by regulating miRISC stability in C. elegans and human cells. PMID:28180320
A Comprehensive Prescription for Plant miRNA Identification. PMID:28174574
De novo characterization of microRNAs in oriental fruit moth Grapholita molesta and selection of reference genes for normalization of microRNA expression. PMID:28158242
Gene-microRNA network module analysis for ovarian cancer. PMID:28155675
Clustering and evolutionary analysis of small RNAs identify regulatory siRNA clusters induced under drought stress in rice. PMID:28155667
Differential expression of microRNAs during fiber development between fuzzless-lintless mutant and its wild-type allotetraploid cotton. PMID:28127052
Regulation of multidrug resistance by microRNAs in anti-cancer therapy. PMID:28119807
Roles of MIWI, MILI and PLD6 in small RNA regulation in mouse growing oocytes. PMID:28115634
miRmine: a database of human miRNA expression profiles. PMID:28108447
MicroRNA expression patterns and signalling pathways in the development and progression of childhood solid tumours. PMID:28103887
Extracellular vesicle mediated intercellular communication at the porcine maternal-fetal interface: A new paradigm for conceptus-endometrial cross-talk. PMID:28079186
Potential roles of microRNAs and ROS in colorectal cancer: diagnostic biomarkers and therapeutic targets. PMID:28061475
Genome-Wide DNA Methylation Patterns Analysis of Noncoding RNAs in Temporal Lobe Epilepsy Patients. PMID:28058582
Genome-wide association study with additional genetic and post-transcriptional analyses reveals novel regulators of plasma factor XI levels. PMID:28053049
TCGA2BED: extracting, extending, integrating, and querying The Cancer Genome Atlas. PMID:28049410
Modulation of microRNA-mRNA Target Pairs by Human Papillomavirus 16 Oncoproteins. PMID:28049151
Changes of Ovarian microRNA Profile in Long-Living Ames Dwarf Mice during Aging. PMID:28046124
miR-628-3p regulates osteoblast differentiation by targeting RUNX2: Possible role in atrophic non-union. PMID:28035362
Role of miRNA and its potential as a novel diagnostic biomarker in drug-induced liver injury. PMID:28028586
From cell biology to immunology: Controlling metastatic progression of cancer via microRNA regulatory networks. PMID:27999740
RNA interference as a gene silencing tool to control Tuta absoluta in tomato (Solanum lycopersicum). PMID:27994959
The genome of the Gulf pipefish enables understanding of evolutionary innovations. PMID:27993155
Improved method for prioritization of disease associated lncRNAs based on ceRNA theory and functional genomics data. PMID:27992375
MicroRNA-34a promoting apoptosis of human lens epithelial cells through down-regulation of B-cell lymphoma-2 and silent information regulator. PMID:27990356
Long-term exposure of MCF-7 breast cancer cells to ethanol stimulates oncogenic features. PMID:27959387
Viral MicroRNAs Identified in Human Dental Pulp. PMID:27939730
FARNA: knowledgebase of inferred functions of non-coding RNA transcripts. PMID:27924038
Role of MicroRNA in the Lung's Innate Immune Response. PMID:27915347
A comparison of microRNA expression profiles from splenic hemangiosarcoma, splenic nodular hyperplasia, and normal spleens of dogs. PMID:27912752
Regulatory network of microRNAs and genes in testicular cancer. PMID:27900048
Networks analysis of genes and microRNAs in human Wilms' tumors. PMID:27900039
Lymph node or perineural invasion is associated with low miR-15a, miR-34c and miR-199b levels in head and neck squamous cell carcinoma. PMID:27896137
Regulatory network analysis of genes and microRNAs in human hepatoblastoma. PMID:27895778
The microRNA toolkit of insects. PMID:27883064
Identification of aberrant tRNA-halves expression patterns in clear cell renal cell carcinoma. PMID:27883021
Increased miR-132 level is associated with visual memory dysfunction in patients with depression. PMID:27877044
Small RNA Library Preparation Method for Next-Generation Sequencing Using Chemical Modifications to Prevent Adapter Dimer Formation. PMID:27875576
miRNAsong: a web-based tool for generation and testing of miRNA sponge constructs in silico. PMID:27857164
Systems analysis identifies miR-29b regulation of invasiveness in melanoma. PMID:27852308
Insights for hepatitis C virus related hepatocellular carcinoma genetic biomarkers: Early diagnosis and therapeutic intervention. PMID:27843535
Identification and characterization of microRNAs expressed in the African malaria vector Anopheles funestus life stages using high throughput sequencing. PMID:27825380
A serum miRNA profile of human longevity: findings from the Baltimore Longitudinal Study of Aging (BLSA). PMID:27824314
High-Throughput Sequencing Reveals H2O2 Stress-Associated MicroRNAs and a Potential Regulatory Network in Brachypodium distachyon Seedlings. PMID:27812362
Identification and Expression Profiling of miRNAome in Goat longissimus dorsi Muscle from Prenatal Stages to a Neonatal Stage. PMID:27798673
Network Consistency Projection for Human miRNA-Disease Associations Inference. PMID:27779232
Discriminative Prediction of A-To-I RNA Editing Events from DNA Sequence. PMID:27764195
Responses of Bovine Innate Immunity to Mycobacterium avium subsp. paratuberculosis Infection Revealed by Changes in Gene Expression and Levels of MicroRNA. PMID:27760169
Functional Annotation of Metastasis-associated MicroRNAs of Melanoma: A Meta-analysis of Expression Profiles. PMID:27748342
Pairing beyond the Seed Supports MicroRNA Targeting Specificity. PMID:27720646
Facts and updates about cardiovascular non-coding RNAs in heart failure. PMID:27708852
A Meta-Path-Based Prediction Method for Human miRNA-Target Association. PMID:27703979
Lateralization of gene expression in the honeybee brain during olfactory learning. PMID:27703214
The role of miRNAs in cardiovascular disease risk factors. PMID:27693002
The First Report of miRNAs from a Thysanopteran Insect, Thrips palmi Karny Using High-Throughput Sequencing. PMID:27685664
MiR-139-5p is associated with inflammatory regulation through c-FOS suppression, and contributes to the progression of primary biliary cholangitis. PMID:27668889
Computational identification and characterization of novel microRNA in the mammary gland of dairy goat (Capra hircus). PMID:27659334
The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species. PMID:27659211
Differences in miRNA and mRNA Profile of Papillary Thyroid Cancer Variants. PMID:27656207
Regulatory network analysis of microRNAs and genes in imatinib-resistant chronic myeloid leukemia. PMID:27638632
Elevated Circulating hsa-miR-106b, hsa-miR-26a, and hsa-miR-29b in Type 2 Diabetes Mellitus with Diarrhea-Predominant Irritable Bowel Syndrome. PMID:27635130
Small RNA Regulators of Plant-Hemipteran Interactions: Micromanagers with Versatile Roles. PMID:27625654
Plasma exosome microRNAs are indicative of breast cancer. PMID:27608715
miR-564 acts as a dual inhibitor of PI3K and MAPK signaling networks and inhibits proliferation and invasion in breast cancer. PMID:27600857
The Smaug RNA-Binding Protein Is Essential for microRNA Synthesis During the Drosophila Maternal-to-Zygotic Transition. PMID:27591754
miR-223 increases gallbladder cancer cell sensitivity to docetaxel by downregulating STMN1. PMID:27577078
Automated detection of ncRNAs in the draft genome sequence of a colonial tunicate: the carpet sea squirt Didemnum vexillum. PMID:27576499
Small RNA and degradome profiling reveals miRNA regulation in the seed germination of ancient eudicot Nelumbo nucifera. PMID:27565736
Identification of miRNAs Potentially Involved in Bronchiolitis Obliterans Syndrome: A Computational Study. PMID:27564214
HGIMDA: Heterogeneous graph inference for miRNA-disease association prediction. PMID:27533456
Identification of extracellular miRNA in archived serum samples by next-generation sequencing from RNA extracted using multiple methods. PMID:27510798
Identification of novel miRNAs from drought tolerant rice variety Nagina 22. PMID:27499088
Gld2-catalyzed 3' monoadenylation of miRNAs in the hippocampus has no detectable effect on their stability or on animal behavior. PMID:27495319
MicroRNA-15a inhibits the growth and invasiveness of malignant melanoma and directly targets on CDCA4 gene. PMID:27492455
The regulation roles of miR-125b, miR-221 and miR-27b in porcine Salmonella infection signalling pathway. PMID:27474500
Differences in molecular evolutionary rates among microRNAs in the human and chimpanzee genomes. PMID:27474039
MicroRNA-33 Regulates the Innate Immune Response via ATP Binding Cassette Transporter-mediated Remodeling of Membrane Microdomains. PMID:27471270
Identification of Known and Novel microRNAs and Their Targets in Peach (Prunus persica) Fruit by High-Throughput Sequencing. PMID:27466805
Comparison of miRNAs and Their Targets in Seed Development between Two Maize Inbred Lines by High-Throughput Sequencing and Degradome Analysis. PMID:27463682
Long Non-Coding RNAs (lncRNAs) of Sea Cucumber: Large-Scale Prediction, Expression Profiling, Non-Coding Network Construction, and lncRNA-microRNA-Gene Interaction Analysis of lncRNAs in Apostichopus japonicus and Holothuria glaberrima During LPS Challenge and Radial Organ Complex Regeneration. PMID:27392411
Transcriptome and Degradome of microRNAs and Their Targets in Response to Drought Stress in the Plants of a Diploid and Its Autotetraploid Paulownia australis. PMID:27388154
Chronic pistachio intake modulates circulating microRNAs related to glucose metabolism and insulin resistance in prediabetic subjects. PMID:27383196
Methylation interactions in Arabidopsis hybrids require RNA-directed DNA methylation and are influenced by genetic variation. PMID:27382183
miR-155 in the progression of lung fibrosis in systemic sclerosis. PMID:27377409
BcCluster: A Bladder Cancer Database at the Molecular Level. PMID:27376128
Transcriptome Analysis on Monocytes from Patients with Neovascular Age-Related Macular Degeneration. PMID:27374485
Studying Dynamic Features in Myocardial Infarction Progression by Integrating miRNA-Transcription Factor Co-Regulatory Networks and Time-Series RNA Expression Data from Peripheral Blood Mononuclear Cells. PMID:27367417
A pan-cancer analysis of MYC-PVT1 reveals CNV-unmediated deregulation and poor prognosis in renal carcinoma. PMID:27366943
The impact of feature selection on one and two-class classification performance for plant microRNAs. PMID:27366641
Virus-derived small RNAs in the penaeid shrimp Fenneropenaeus chinensis during acute infection of the DNA virus WSSV. PMID:27349643
Network analysis of microRNAs, transcription factors, target genes and host genes in human anaplastic astrocytoma. PMID:27347075
Circulating microRNA Profiles during the Bovine Oestrous Cycle. PMID:27340826
A survey of the sorghum transcriptome using single-molecule long reads. PMID:27339290
Network analysis of microRNAs, transcription factors, target genes and host genes in nasopharyngeal carcinoma. PMID:27313701
A comprehensive view of the web-resources related to sericulture. PMID:27307138
Identification of microRNAs Involved in Regeneration of the Secondary Vascular System in Populus tomentosa Carr. PMID:27303419
Turing Revisited: Decoding the microRNA Messages in Brain Extracellular Vesicles for Early Detection of Neurodevelopmental Disorders. PMID:27301443
Post-transcriptional knowledge in pathway analysis increases the accuracy of phenotypes classification. PMID:27275538
MiR-106b-5p Inhibits Tumor Necrosis Factor-α-induced Apoptosis by Targeting Phosphatase and Tensin Homolog Deleted on Chromosome 10 in Vascular Endothelial Cells. PMID:27270534
Biogenesis and Function of Transfer RNA-Related Fragments (tRFs). PMID:27263052
Diagnostic value of microRNAs in asbestos exposure and malignant mesothelioma: systematic review and qualitative meta-analysis. PMID:27259231
miRNAFold: a web server for fast miRNA precursor prediction in genomes. PMID:27242364
Association of a let-7 miRNA binding region of TGFBR1 with hereditary mismatch repair proficient colorectal cancer (MSS HNPCC). PMID:27234654
Genome-wide identification of microRNAs in pomegranate (Punica granatum L.) by high-throughput sequencing. PMID:27230657
Identification of prognostic biomarkers in glioblastoma using a long non-coding RNA-mediated, competitive endogenous RNA network. PMID:27229531
Accurate detection for a wide range of mutation and editing sites of microRNAs from small RNA high-throughput sequencing profiles. PMID:27229138
MicroRNAs and liver disease. PMID:27225852
miR-190 Enhances HIF-Dependent Responses to Hypoxia in Drosophila by Inhibiting the Prolyl-4-hydroxylase Fatiga. PMID:27223464
Predicting MicroRNA Biomarkers for Cancer Using Phylogenetic Tree and Microarray Analysis. PMID:27213352
Dissecting miRNAs in Wheat D Genome Progenitor, Aegilops tauschii. PMID:27200073
The Role of microRNAs in the Repeated Parallel Diversification of Lineages of Midas Cichlid Fish from Nicaragua. PMID:27189980
microRNAs in the Same Clusters Evolve to Coordinately Regulate Functionally Related Genes. PMID:27189568
Placental microRNA expression in pregnancies complicated by superimposed pre‑eclampsia on chronic hypertension. PMID:27176897
MicroRNA-194 Modulates Glucose Metabolism and Its Skeletal Muscle Expression Is Reduced in Diabetes. PMID:27163678
A novel tumor-promoting mechanism of IL6 and the therapeutic efficacy of tocilizumab: Hypoxia-induced IL6 is a potent autophagy initiator in glioblastoma via the p-STAT3-MIR155-3p-CREBRF pathway. PMID:27163161
MINTbase: a framework for the interactive exploration of mitochondrial and nuclear tRNA fragments. PMID:27153631
Identification of side- and shear-dependent microRNAs regulating porcine aortic valve pathogenesis. PMID:27151744
Differential expression of conserved and novel microRNAs during tail regeneration in the lizard Anolis carolinensis. PMID:27150582
Small RNA Profiles of the Rice PTGMS Line Wuxiang S Reveal miRNAs Involved in Fertility Transition. PMID:27148335
Comparative genomic analysis of upstream miRNA regulatory motifs in Caenorhabditis. PMID:27140965
N(ϵ) -Carboxymethyllysine Increases the Expression of miR-103/143 and Enhances Lipid Accumulation in 3T3-L1 Cells. PMID:27137869
Network and pathway analysis of microRNAs, transcription factors, target genes and host genes in human glioma. PMID:27123147
Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system. PMID:27118214
Separating the wheat from the chaff: systematic identification of functionally relevant noncoding variants in ADHD. PMID:27113999
Diverse human extracellular RNAs are widely detected in human plasma. PMID:27112789
miRNet - dissecting miRNA-target interactions and functional associations through network-based visual analysis. PMID:27105848
Temperature expression patterns of genes and their coexpression with LncRNAs revealed by RNA-Seq in non-heading Chinese cabbage. PMID:27103267
Identification, Expression Analysis, and Target Prediction of Flax Genotroph MicroRNAs Under Normal and Nutrient Stress Conditions. PMID:27092149
ChemiRs: a web application for microRNAs and chemicals. PMID:27091357
Wolbachia Blocks Viral Genome Replication Early in Infection without a Transcriptional Response by the Endosymbiont or Host Small RNA Pathways. PMID:27089431
Can the microRNA expression profile help to identify novel targets for zoledronic acid in breast cancer? PMID:27081088
Inhibition of miR-21 in glioma cells using catalytic nucleic acids. PMID:27079911
Identification of colorectal cancer-restricted microRNAs and their target genes based on high-throughput sequencing data. PMID:27069368
Predicting miRNA Targets by Integrating Gene Regulatory Knowledge with Expression Profiles. PMID:27064982
Oral squamous cell carcinoma: microRNA expression profiling and integrative analyses for elucidation of tumourigenesis mechanism. PMID:27056547
Arsenic-exposed Keratinocytes Exhibit Differential microRNAs Expression Profile; Potential Implication of miR-21, miR-200a and miR-141 in Melanoma Pathway. PMID:27054085
Long non-coding RNA Databases in Cardiovascular Research. PMID:27049585
MicroRNA degeneracy and pluripotentiality within a Lavallière-tie architecture confers robustness to gene expression networks. PMID:27038488
Wheat miRNA ancestors: evident by transcriptome analysis of A, B, and D genome donors. PMID:27032785
Identification and characterization of microRNAs in the zoonotic fluke Fasciolopsis buski. PMID:27021181
Dissecting dysfunctional crosstalk pathways regulated by miRNAs during glioma progression. PMID:27013589
Compartmentalization of functions and predicted miRNA regulation among contiguous regions of the nematode intestine. PMID:27002534
Crosstalk between Long Noncoding RNAs and MicroRNAs in Health and Disease. PMID:26978351
REGene: a literature-based knowledgebase of animal regeneration that bridge tissue regeneration and cancer. PMID:26975833
BBBomics-Human Blood Brain Barrier Transcriptomics Hub. PMID:26973449
miR2118-triggered phased siRNAs are differentially expressed during the panicle development of wild and domesticated African rice species. PMID:26969003
Circulating micrornas associated with glycemic impairment and progression in Asian Indians. PMID:26966540
Programming of Plant Leaf Senescence with Temporal and Inter-Organellar Coordination of Transcriptome in Arabidopsis. PMID:26966169
Integrative analysis of microRNA and mRNA expression profiles in non-small-cell lung cancer. PMID:26964645
Characterization and Profiling of Liver microRNAs by RNA-sequencing in Cattle Divergently Selected for Residual Feed Intake. PMID:26954124
The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. PMID:26950095
Dicer and microRNA expression in multiple sclerosis and response to interferon therapy. PMID:26943961
Long non-coding RNA containing ultraconserved genomic region 8 promotes bladder cancer tumorigenesis. PMID:26943042
Analysis of secondary structural elements in human microRNA hairpin precursors. PMID:26928172
Sertoli Cell-Only Syndrome: Behind the Genetic Scenes. PMID:26925412
Constructing an integrated genetic and epigenetic cellular network for whole cellular mechanism using high-throughput next-generation sequencing data. PMID:26897165
Role of apoptosis-related miRNAs in resveratrol-induced breast cancer cell death. PMID:26890143
The Associations of Single Nucleotide Polymorphisms in miR196a2, miR-499, and miR-608 With Breast Cancer Susceptibility: A STROBE-Compliant Observational Study. PMID:26886638
WBSMDA: Within and Between Score for MiRNA-Disease Association prediction. PMID:26880032
Identification of differentially expressed miRNAs in individual breast cancer patient and application in personalized medicine. PMID:26878388
miRNA Repertoires of Demosponges Stylissa carteri and Xestospongia testudinaria. PMID:26871907
Identification of miRNAs and Their Targets in the Liverwort Marchantia polymorpha by Integrating RNA-Seq and Degradome Analyses. PMID:26861787
Transcriptome Analysis of Targeted Mouse Mutations Reveals the Topography of Local Changes in Gene Expression. PMID:26839965
The Role of miR-378a in Metabolism, Angiogenesis, and Muscle Biology. PMID:26839547
Development of MicroRNA Therapeutics for Hepatocellular Carcinoma. PMID:26835673
AURA 2: Empowering discovery of post-transcriptional networks. PMID:26779400
Repeated exposure to neurotoxic levels of chlorpyrifos alters hippocampal expression of neurotrophins and neuropeptides. PMID:26775027
Integrative meta-analysis identifies microRNA-regulated networks in infantile hemangioma. PMID:26772808
The tae-miR408-Mediated Control of TaTOC1 Genes Transcription Is Required for the Regulation of Heading Time in Wheat. PMID:26768600
iMiRNA-SSF: Improving the Identification of MicroRNA Precursors by Combining Negative Sets with Different Distributions. PMID:26753561
Transcriptome Analysis of Honeybee (Apis Mellifera) Haploid and Diploid Embryos Reveals Early Zygotic Transcription during Cleavage. PMID:26751956
A novel variable exonic region and differential expression of LINC00663 non-coding RNA in various cancer cell lines and normal human tissue samples. PMID:26743782
MicroRNA Profiles in Spontaneous Decidualized Menstrual Endometrium and Early Pregnancy Decidua with Successfully Implanted Embryos. PMID:26735129
Construction and analysis of three networks of genes and microRNAs in adenocarcinoma. PMID:26722320
MicroRNA-584-3p, a novel tumor suppressor and prognostic marker, reduces the migration and invasion of human glioma cells by targeting hypoxia-induced ROCK1. PMID:26715733
Genome-wide discovery and validation of Eucalyptus small RNAs reveals variable patterns of conservation and diversity across species of Myrtaceae. PMID:26714854
Schizophrenia-Associated MIR204 Regulates Noncoding RNAs and Affects Neurotransmitter and Ion Channel Gene Sets. PMID:26714269
The role of microRNAs in cardiac development and regenerative capacity. PMID:26702142
An approach to identify the novel miRNA encoded from H. Annuus EST sequences. PMID:26697356
The evolution of Homo sapiens denisova and Homo sapiens neanderthalensis miRNA targeting genes in the prenatal and postnatal brain. PMID:26693966
miRNA-132-3p inhibits osteoblast differentiation by targeting Ep300 in simulated microgravity. PMID:26686902
miRNA 206 and miRNA 574-5p are highly expression in coronary artery disease. PMID:26685009
Genetic and epigenetic mechanisms of NASH. PMID:26683320
MatPred: Computational Identification of Mature MicroRNAs within Novel Pre-MicroRNAs. PMID:26682221
Transcriptional, post-transcriptional and chromatin-associated regulation of pri-miRNAs, pre-miRNAs and moRNAs. PMID:26673698
microRNA and gene networks in human laryngeal cancer. PMID:26668624
Prognostic and predictive miRNA biomarkers in bladder, kidney and prostate cancer: Where do we stand in biomarker development? PMID:26660324
A pH Sensitive High-Throughput Assay for miRNA Binding of a Peptide-Aminoglycoside (PA) Library. PMID:26656788
Motif co-regulation and co-operativity are common mechanisms in transcriptional, post-transcriptional and post-translational regulation. PMID:26626130
Comparative miRNAs analysis of Two contrasting broccoli inbred lines with divergent head-forming capacity under temperature stress. PMID:26625945
Network analysis of microRNAs and genes in human osteosarcoma. PMID:26622516
Autotetraploid rice methylome analysis reveals methylation variation of transposable elements and their effects on gene expression. PMID:26621743
SMiRK: an Automated Pipeline for miRNA Analysis. PMID:26613105
Profile of microRNA in Giant Panda Blood: A Resource for Immune-Related and Novel microRNAs. PMID:26599861
Towards Clinical Applications of Blood-Borne miRNA Signatures: The Influence of the Anticoagulant EDTA on miRNA Abundance. PMID:26599228
Identification of General and Heart-Specific miRNAs in Sheep (Ovis aries). PMID:26599010
deepBase v2.0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data. PMID:26590255
Evolutionarily Dynamic, but Robust, Targeting of Resistance Genes by the miR482/2118 Gene Family in the Solanaceae. PMID:26590211
MicroRNA-424 Predicts a Role for β-1,4 Branched Glycosylation in Cell Cycle Progression. PMID:26589799
Regulation signature of miR-143 and miR-26 in porcine Salmonella infection identified by binding site enrichment analysis. PMID:26589421
DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators. PMID:26586797
Role of bioinformatics in establishing microRNAs as modulators of abiotic stress responses: the new revolution. PMID:26578966
SomamiR 2.0: a database of cancer somatic mutations altering microRNA-ceRNA interactions. PMID:26578591
Deep sequencing of small RNA facilitates tissue and sex associated microRNA discovery in zebrafish. PMID:26574018
A Diversity of Conserved and Novel Ovarian MicroRNAs in the Speckled Wood (Pararge aegeria). PMID:26556800
Novel regulation and functional interaction of polycistronic miRNAs. PMID:26554028
Cardiac Disease Status Dictates Functional mRNA Targeting Profiles of Individual MicroRNAs. PMID:26553694
Impacts of Whole-Genome Triplication on MIRNA Evolution in Brassica rapa. PMID:26527651
Deep sequencing shows microRNA involvement in bovine mammary gland adaptation to diets supplemented with linseed oil or safflower oil. PMID:26519053
Dengue virus infection alters post-transcriptional modification of microRNAs in the mosquito vector Aedes aegypti. PMID:26514826
Identification of miRNAs with potential roles in regulation of anther development and male-sterility in 7B-1 male-sterile tomato mutant. PMID:26511108
Detecting new microRNAs in human osteoarthritic chondrocytes identifies miR-3085 as a human, chondrocyte-selective, microRNA. PMID:26497608
Decreased MicroRNA-26a expression causes cisplatin resistance in human non-small cell lung cancer. PMID:26492332
MicroRNAs Regulate Mitochondrial Function in Cerebral Ischemia-Reperfusion Injury. PMID:26492239
Genome-wide analysis of thapsigargin-induced microRNAs and their targets in NIH3T3 cells. PMID:26484121
Profiling miRNAs in nasopharyngeal carcinoma FFPE tissue by microarray and Next Generation Sequencing. PMID:26484110
A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome. PMID:26473382
Subpathway-GMir: identifying miRNA-mediated metabolic subpathways by integrating condition-specific genes, microRNAs, and pathway topologies. PMID:26472186
Genome-wide identification and functional analysis of lincRNAs acting as miRNA targets or decoys in maize. PMID:26470872
Genome-wide DNA methylome reveals the dysfunction of intronic microRNAs in major psychosis. PMID:26462620
miRNA Nomenclature: A View Incorporating Genetic Origins, Biosynthetic Pathways, and Sequence Variants. PMID:26453491
The Hox cluster microRNA miR-615: a case study of intronic microRNA evolution. PMID:26451238
Differential expression of seven conserved microRNAs in response to abiotic stress and their regulatory network in Helianthus annuus. PMID:26442054
Identification of Novel and Conserved microRNAs in Homalodisca vitripennis, the Glassy-Winged Sharpshooter by Expression Profiling. PMID:26440407
Nucleotide sequence of miRNA precursor contributes to cleavage site selection by Dicer. PMID:26424848
Bioinformatic identification and expression analysis of Nelumbo nucifera microRNA and their targets. PMID:26421251
Identification of circulating miRNAs profiles that distinguish malignant pleural mesothelioma from lung adenocarcinoma. PMID:26417297
Unravelling the complexity of microRNA-mediated gene regulation in black pepper (Piper nigrum L.) using high-throughput small RNA profiling. PMID:26400683
Beyond the one-locus-one-miRNA paradigm: microRNA isoforms enable deeper insights into breast cancer heterogeneity. PMID:26400174
Automated Identification of Core Regulatory Genes in Human Gene Regulatory Networks. PMID:26393364
Small RNAs from the wheat stripe rust fungus (Puccinia striiformis f.sp. tritici). PMID:26391470
Association of Nicotinamide Phosphoribosyltransferase (NAMPT) Gene Polymorphisms and of Serum NAMPT Levels with Dilated Cardiomyopathy in a Chinese Population. PMID:26389889
siRNA Versus miRNA as Therapeutics for Gene Silencing. PMID:26372022
Regulatory RNAs and control of epigenetic mechanisms: expectations for cognition and cognitive dysfunction. PMID:26366811
Water-mediated recognition of t1-adenosine anchors Argonaute2 to microRNA targets. PMID:26359634
Evidence for the expression of abundant microRNAs in the locust genome. PMID:26329925
MicroRNA signatures from multidrug‑resistant Mycobacterium tuberculosis. PMID:26324150
MicroRNA-142-3p and microRNA-142-5p are downregulated in hepatocellular carcinoma and exhibit synergistic effects on cell motility. PMID:26293610
Integrated analysis of miRNA, gene, and pathway regulatory networks in hepatic cancer stem cells. PMID:26259570
MicroRNA and transcription factor mediated regulatory network analysis reveals critical regulators and regulatory modules in myocardial infarction. PMID:26258537
Emerging Roles of Herpesvirus microRNAs During In Vivo Infection and Pathogenesis. PMID:26246961
A Deluge of Complex Repeats: The Solanum Genome. PMID:26241045
Improved canine exome designs, featuring ncRNAs and increased coverage of protein coding genes. PMID:26235384
The Emerging Role of miR-223 in Platelet Reactivity: Implications in Antiplatelet Therapy. PMID:26221610
Update on the Pathogenic Implications and Clinical Potential of microRNAs in Cardiac Disease. PMID:26221581
Dissecting the target specificity of RNase H recruiting oligonucleotides using massively parallel reporter analysis of short RNA motifs. PMID:26220183
Two Virus-Induced MicroRNAs Known Only from Teleost Fishes Are Orthologues of MicroRNAs Involved in Cell Cycle Control in Humans. PMID:26207374
Exosome-mediated microRNA signaling from breast cancer cells is altered by the anti-angiogenesis agent docosahexaenoic acid (DHA). PMID:26178901
Root precursors of microRNAs in wild emmer and modern wheats show major differences in response to drought stress. PMID:26174050
The microRNA-183 cluster: the family that plays together stays together. PMID:26170234
Differential and coherent processing patterns from small RNAs. PMID:26166713
A framework for improving microRNA prediction in non-human genomes. PMID:26163062
How to build personalized multi-omics comorbidity profiles. PMID:26157799
Inhibition of Gastric Tumor Cell Growth Using Seed-targeting LNA as Specific, Long-lasting MicroRNA Inhibitors. PMID:26151747
Transcriptome analysis of mRNA and miRNA in skeletal muscle indicates an important network for differential Residual Feed Intake in pigs. PMID:26150313
MicroRNAs: New Players in Anesthetic-Induced Developmental Neurotoxicity. PMID:26146587
Integrating full spectrum of sequence features into predicting functional microRNA-mRNA interactions. PMID:26130578
Biomarker discovery: quantification of microRNAs and other small non-coding RNAs using next generation sequencing. PMID:26130076
The Role of Transposable Elements in the Origin and Evolution of MicroRNAs in Human. PMID:26115450
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data. PMID:26109357
microRNAs and the evolution of complex multicellularity: identification of a large, diverse complement of microRNAs in the brown alga Ectocarpus. PMID:26101255
MiRBooking simulates the stoichiometric mode of action of microRNAs. PMID:26089388
Functional marker development of miR1511-InDel and allelic diversity within the genus Glycine. PMID:26084707
Widespread and evolutionary analysis of a MITE family Monkey King in Brassicaceae. PMID:26084405
Splicing remodels the let-7 primary microRNA to facilitate Drosha processing in Caenorhabditis elegans. PMID:26081559
A transgenic resource for conditional competitive inhibition of conserved Drosophila microRNAs. PMID:26081261
Human miR-3145 inhibits influenza A viruses replication by targeting and silencing viral PB1 gene. PMID:26080461
Identification and Characterization of Novel Maize Mirnas Involved in Different Genetic Background. PMID:26078720
Robust Distal Tip Cell Pathfinding in the Face of Temperature Stress Is Ensured by Two Conserved microRNAS in Caenorhabditis elegans. PMID:26078280
Deep sequencing, profiling and detailed annotation of microRNAs in Takifugu rubripes. PMID:26078057
piRNA-like small RNAs mark extended 3'UTRs present in germ and somatic cells. PMID:26076733
Evolutionary and expression analysis of miR-#-5p and miR-#-3p at the miRNAs/isomiRs levels. PMID:26075215
Ginsenoside-Rb1 Protects Hypoxic- and Ischemic-Damaged Cardiomyocytes by Regulating Expression of miRNAs. PMID:26074986
Dual regulation by microRNA-200b-3p and microRNA-200b-5p in the inhibition of epithelial-to-mesenchymal transition in triple-negative breast cancer. PMID:26062653
Profiling and initial validation of urinary microRNAs as biomarkers in IgA nephropathy. PMID:26056621
A knowledge base for Vitis vinifera functional analysis. PMID:26050794
Down-regulation of hsa-miR-1264 contributes to DNMT1-mediated silencing of SOCS3. PMID:26047583
Clinical impact of circulating miR-26a, miR-191, and miR-208b in plasma of patients with acute myocardial infarction. PMID:26044724
Multiple In Vivo Biological Processes Are Mediated by Functionally Redundant Activities of Drosophila mir-279 and mir-996. PMID:26042831
Emerging applications of read profiles towards the functional annotation of the genome. PMID:26042150
C/D-box snoRNA-derived RNA production is associated with malignant transformation and metastatic progression in prostate cancer. PMID:26041889
Integrative network-based approach identifies key genetic elements in breast invasive carcinoma. PMID:26040466
Principles of miRNA-mRNA interactions: beyond sequence complementarity. PMID:26037721
A null model for Pearson coexpression networks. PMID:26030917
Quantitative and qualitative analysis of small RNAs in human endothelial cells and exosomes provides insights into localized RNA processing, degradation and sorting. PMID:26027894
Neurobehavioral Alterations in a Genetic Murine Model of Feingold Syndrome 2. PMID:26026879
Mirinho: An efficient and general plant and animal pre-miRNA predictor for genomic and deep sequencing data. PMID:26022464
MicroRNA analysis suggests an additional level of feedback regulation in the NF-κB signaling cascade. PMID:26020802
MiR-451 inhibits proliferation of esophageal carcinoma cell line EC9706 by targeting CDKN2D and MAP3K1. PMID:26019450
MicroRNA biogenesis pathways in cancer. PMID:25998712
MicroRNA-Dependent Transcriptional Silencing of Transposable Elements in Drosophila Follicle Cells. PMID:25993106
MicroRNAs in vascular tissue engineering and post-ischemic neovascularization. PMID:25980937
Identification and Characterization of MicroRNAs in Ginkgo biloba var. epiphylla Mak. PMID:25978425
AtmiRNET: a web-based resource for reconstructing regulatory networks of Arabidopsis microRNAs. PMID:25972521
Comparative analysis of the Dicer-like gene family reveals loss of miR162 target site in SmDCL1 from Salvia miltiorrhiza. PMID:25970825
MicroRNAs expression patterns in the response of poplar woody root to bending stress. PMID:25963516
PACCMIT/PACCMIT-CDS: identifying microRNA targets in 3' UTRs and coding sequences. PMID:25948580
Role of MicroRNAs in Malignant Glioma. PMID:25947409
Next-Generation Sequencing Analysis Reveals Differential Expression Profiles of MiRNA-mRNA Target Pairs in KSHV-Infected Cells. PMID:25942495
Bias in ligation-based small RNA sequencing library construction is determined by adaptor and RNA structure. PMID:25942392
Identification and Characterization of Cyprinid Herpesvirus-3 (CyHV-3) Encoded MicroRNAs. PMID:25928140
Parameter optimization for constructing competing endogenous RNA regulatory network in glioblastoma multiforme and other cancers. PMID:25917195
The genomes of two key bumblebee species with primitive eusocial organization. PMID:25908251
The small RNA content of human sperm reveals pseudogene-derived piRNAs complementary to protein-coding genes. PMID:25904136
A microRNA profile associated with Opisthorchis viverrini-induced cholangiocarcinoma in tissue and plasma. PMID:25903557
An integrative approach to identify hexaploid wheat miRNAome associated with development and tolerance to abiotic stress. PMID:25903161
Identification of microRNA genes in three opisthorchiids. PMID:25898350
Histone modifications induced by MDV infection at early cytolytic and latency phases. PMID:25896894
mBISON: Finding miRNA target over-representation in gene lists from ChIP-sequencing data. PMID:25889572
MicroRNA-mediated regulation of differentiation and trans-differentiation in stem cells. PMID:25887992
Unique patterns of transcript and miRNA expression in the South American strong voltage electric eel (Electrophorus electricus). PMID:25887781
MicroRNAs enrichment in GWAS of complex human phenotypes. PMID:25884492
The Regulatory Role of MicroRNAs in EMT and Cancer. PMID:25883654
An update of miRNASNP database for better SNP selection by GWAS data, miRNA expression and online tools. PMID:25877638
Influence of toxicologically relevant metals on human epigenetic regulation. PMID:25874027
Improving small RNA-seq by using a synthetic spike-in set for size-range quality control together with a set for data normalization. PMID:25870415
High-Throughput Sequencing Reveals Diverse Sets of Conserved, Nonconserved, and Species-Specific miRNAs in Jute. PMID:25861616
Modulation of miRNAs in Pulmonary Hypertension. PMID:25861465
Restitution of gene expression and histone acetylation signatures altered by hepatitis B virus through antiviral microRNA-like molecules in nontransformed murine hepatocytes. PMID:25859285
Transcript and protein expression decoupling reveals RNA binding proteins and miRNAs as potential modulators of human aging. PMID:25853883
MicroRNA 181b regulates decorin production by dermal fibroblasts and may be a potential therapy for hypertrophic scar. PMID:25837671
Deep sequencing of cardiac microRNA-mRNA interactomes in clinical and experimental cardiomyopathy. PMID:25836573
Gemcitabine impacts differentially on bladder and kidney cancer cells: distinct modulations in the expression patterns of apoptosis-related microRNAs and BCL2 family genes. PMID:25833690
An integrated analysis of the effects of microRNA and mRNA on esophageal squamous cell carcinoma. PMID:25823933
Selective microRNA-Offset RNA expression in human embryonic stem cells. PMID:25822230
Identification of real microRNA precursors with a pseudo structure status composition approach. PMID:25821974
Population genomic analysis of 962 whole genome sequences of humans reveals natural selection in non-coding regions. PMID:25807536
Diversity and functional convergence of small noncoding RNAs in male germ cell differentiation and fertilization. PMID:25805854
Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer. PMID:25800746
miRBoost: boosting support vector machines for microRNA precursor classification. PMID:25795417
Identification of subgroup-specific miRNA patterns by epigenetic profiling of sporadic and Lynch syndrome-associated colorectal and endometrial carcinoma. PMID:25767621
Dependence of intracellular and exosomal microRNAs on viral E6/E7 oncogene expression in HPV-positive tumor cells. PMID:25760330
Integrated microRNA-mRNA analysis revealing the potential roles of microRNAs in tongue squamous cell cancer. PMID:25760063
MicroRNAs in Liver Disease: Bench to Bedside. PMID:25755505
Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean. PMID:25747880
The precision-recall plot is more informative than the ROC plot when evaluating binary classifiers on imbalanced datasets. PMID:25738806
Hsa-microRNA-181a is a regulator of a number of cancer genes and a biomarker for endometrial carcinoma in patients: a bioinformatic and clinical study and the therapeutic implication. PMID:25733820
MicroRNA regulatory networks in human adipose tissue and obesity. PMID:25732520
Microprocessor mediates transcriptional termination of long noncoding RNA transcripts hosting microRNAs. PMID:25730776
The microRNA feedback regulation of p63 in cancer progression. PMID:25726529
Analysis of 13 cell types reveals evidence for the expression of numerous novel primate- and tissue-specific microRNAs. PMID:25713380
Utility of circulating microRNAs as clinical biomarkers for cardiovascular diseases. PMID:25710029
Identification of novel miRNAs and miRNA expression profiling in wheat hybrid necrosis. PMID:25706289
Detecting key genes regulated by miRNAs in dysfunctional crosstalk pathway of myasthenia gravis. PMID:25705681
Comparison of senescence-associated miRNAs in primary skin and lung fibroblasts. PMID:25700689
Can the chemotherapeutic agents perform anticancer activity through miRNA expression regulation? Proposing a new hypothesis [corrected]. PMID:25698235
Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21. PMID:25693181
Gammaherpesvirus small noncoding RNAs are bifunctional elements that regulate infection and contribute to virulence in vivo. PMID:25691585
Computational Prediction of miRNA Genes from Small RNA Sequencing Data. PMID:25674563
Genome-Wide Characterization of miRNAs Involved in N Gene-Mediated Immunity in Response to Tobacco Mosaic Virus in Nicotiana benthamiana. PMID:25673968
MicroRNAs and the regulation of aldosterone signaling in the kidney. PMID:25673770
In vivo expression patterns of microRNAs of Gallid herpesvirus 2 (GaHV-2) during the virus life cycle and development of Marek's disease lymphomas. PMID:25666057
MicroRNA-26a induced by hypoxia targets HDAC6 in myogenic differentiation of embryonic stem cells. PMID:25662604
Characterization of the mammalian miRNA turnover landscape. PMID:25653157
Epigenetic effects of cadmium in cancer: focus on melanoma. PMID:25646071
Accurate transcriptome-wide prediction of microRNA targets and small interfering RNA off-targets with MIRZA-G. PMID:25628353
Diagnostic and therapeutic application of noncoding RNAs for hepatocellular carcinoma. PMID:25624991
MBSTAR: multiple instance learning for predicting specific functional binding sites in microRNA targets. PMID:25614300
Bias in microRNA functional enrichment analysis. PMID:25609791
Helical defects in microRNA influence protein binding by TAR RNA binding protein. PMID:25608000
ARGONAUTE2 cooperates with SWI/SNF complex to determine nucleosome occupancy at human Transcription Start Sites. PMID:25605800
Frontier impact of microRNAs in skeletal muscle research: a future perspective. PMID:25601837
Small indels induced by CRISPR/Cas9 in the 5' region of microRNA lead to its depletion and Drosha processing retardance. PMID:25590615
Modulation of microRNA editing, expression and processing by ADAR2 deaminase in glioblastoma. PMID:25582055
Prediction of mature microRNA and piwi-interacting RNA without a genome reference or precursors. PMID:25580537
A Burst of miRNA Innovation in the Early Evolution of Butterflies and Moths. PMID:25576364
Protein interactome of muscle invasive bladder cancer. PMID:25569276
plantDARIO: web based quantitative and qualitative analysis of small RNA-seq data in plants. PMID:25566282
Methods and compositions for amplification and detection of microRNAs (miRNAs) and noncoding RNAs (ncRNAs) using the signature sequence amplification method (SSAM). PMID:25564022
Identification of retinopathy of prematurity related miRNAs in hyperoxia-induced neonatal rats by deep sequencing. PMID:25561234
Improving miRNA-mRNA interaction predictions. PMID:25559987
Dicer-TRBP complex formation ensures accurate mammalian microRNA biogenesis. PMID:25557550
The BRCA1/2-directed miRNA signature predicts a good prognosis in ovarian cancer patients with wild-type BRCA1/2. PMID:25537514
Comparative microRNA expression profiles of cynomolgus monkeys, rat, and human reveal that mir-182 is involved in T2D pathogenic processes. PMID:25530976
The miR-206/133b cluster is dispensable for development, survival and regeneration of skeletal muscle. PMID:25530839
Adipocyte-derived exosomal miRNAs: a novel mechanism for obesity-related disease. PMID:25518011
Computational challenges, tools, and resources for analyzing co- and post-transcriptional events in high throughput. PMID:25515586
Identification of a polyomavirus microRNA highly expressed in tumors. PMID:25514573
The Role of microRNAs in Bovine Infection and Immunity. PMID:25505900
miR-125a-5p is a prognostic biomarker that targets HDAC4 to suppress breast tumorigenesis. PMID:25504437
The miR9863 family regulates distinct Mla alleles in barley to attenuate NLR receptor-triggered disease resistance and cell-death signaling. PMID:25502438
Overexpression of miR-21-5p as a predictive marker for complete tumor regression to neoadjuvant chemoradiotherapy in rectal cancer patients. PMID:25496125
Signature microRNAs in human cornea limbal epithelium. PMID:25487418
miR-148a is upregulated by Twist1 and T-bet and promotes Th1-cell survival by regulating the proapoptotic gene Bim. PMID:25486906
p53 shapes genome-wide and cell type-specific changes in microRNA expression during the human DNA damage response. PMID:25486198
MicroRNA Dysregulation, Gene Networks, and Risk for Schizophrenia in 22q11.2 Deletion Syndrome. PMID:25484875
The biological functions of miRNAs: lessons from in vivo studies. PMID:25484347
Regulation of MAP kinase signaling cascade by microRNAs in Oryza sativa. PMID:25482813
Stress-induced endogenous siRNAs targeting regulatory intron sequences in Brachypodium. PMID:25480817
Novel and conserved heat-responsive microRNAs in wheat (Triticum aestivum L.). PMID:25480755
Temporal and Spatial Expression Patterns of miR-302 and miR-367 During Early Embryonic Chick Development. PMID:25473455
miRNAs can be generally associated with human pathologies as exemplified for miR-144. PMID:25465851
Accessible DNA and relative depletion of H3K9me2 at maize loci undergoing RNA-directed DNA methylation. PMID:25465407
MicroRNAs associated with exercise and diet: a systematic review. PMID:25465031
The bull sperm microRNAome and the effect of fescue toxicosis on sperm microRNA expression. PMID:25462855
Spatiotemporal dynamics of microRNA during epithelial collective cell migration. PMID:25453946
Circulating microRNAs in cardiovascular diseases: from biomarkers to therapeutic targets. PMID:25445171
Diversity, expression and mRNA targeting abilities of Argonaute-targeting miRNAs among selected vascular plants. PMID:25443390
Converging evidence implicates the abnormal microRNA system in schizophrenia. PMID:25429046
The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima. PMID:25423365
De novo transcriptome assembly, gene annotation, marker development, and miRNA potential target genes validation under abiotic stresses in Oenanthe javanica. PMID:25416420
Identification of core miRNA based on small RNA-seq and RNA-seq for colorectal cancer by bioinformatics. PMID:25412953
Current transcriptomics in pig immunity research. PMID:25398484
Prediction of MicroRNA Precursors Using Parsimonious Feature Sets. PMID:25392687
High-throughput sequencing approach uncovers the miRNome of peritoneal endometriotic lesions and adjacent healthy tissues. PMID:25386850
MicroRNAs as controlled systems and controllers in non-alcoholic fatty liver disease. PMID:25386056
miRNA Temporal Analyzer (mirnaTA): a bioinformatics tool for identifying differentially expressed microRNAs in temporal studies using normal quantile transformation. PMID:25379175
Characterization of microRNA expression profiles in Leishmania-infected human phagocytes. PMID:25376316
Deep sequencing reveals important roles of microRNAs in response to drought and salinity stress in cotton. PMID:25371507
Identification of most stable endogenous control genes for microRNA quantification in the developing mouse lung. PMID:25368994
Rapid diversification of five Oryza AA genomes associated with rice adaptation. PMID:25368197
MicroRNAs in nasopharyngeal carcinoma. PMID:25367334
Microevolution of nematode miRNAs reveals diverse modes of selection. PMID:25355809
Genome-wide association study identifies phospholipase C zeta 1 (PLCz1) as a stallion fertility locus in Hanoverian warmblood horses. PMID:25354211
Identification and expression profiling of microRNAs in the brain, liver and gonads of marine medaka (Oryzias melastigma) and in response to hypoxia. PMID:25350659
What makes a blood cell based miRNA expression pattern disease specific?--a miRNome analysis of blood cell subsets in lung cancer patients and healthy controls. PMID:25344866
MicroRNA polymorphisms and risk of colorectal cancer. PMID:25342389
Abnormal dosage of ultraconserved elements is highly disfavored in healthy cells but not cancer cells. PMID:25340765
Nematode endogenous small RNA pathways. PMID:25340013
Neuronal calcium signaling pathways are associated with the development of epilepsy. PMID:25339366
lncRNASNP: a database of SNPs in lncRNAs and their potential functions in human and mouse. PMID:25332392
Integrated microRNA and mRNA transcriptome sequencing reveals the potential roles of miRNAs in stage I endometrioid endometrial carcinoma. PMID:25329664
Regulation of NF-κB signaling by oxidized glycerophospholipid and IL-1β induced miRs-21-3p and -27a-5p in human aortic endothelial cells. PMID:25327529
MicroRNAs: promising chemoresistance biomarkers in gastric cancer with diagnostic and therapeutic potential. PMID:25320504
A 2.5-kilobase deletion containing a cluster of nine microRNAs in the latency-associated-transcript locus of the pseudorabies virus affects the host response of porcine trigeminal ganglia during established latency. PMID:25320324
A novel class of somatic small RNAs similar to germ cell pachytene PIWI-interacting small RNAs. PMID:25320077
Genome of the house fly, Musca domestica L., a global vector of diseases with adaptations to a septic environment. PMID:25315136
Identification and characterization of Wilt and salt stress-responsive microRNAs in chickpea through high-throughput sequencing. PMID:25295754
Large-scale modeling of condition-specific gene regulatory networks by information integration and inference. PMID:25294834
MicroRNA and gene networks in human diffuse large B-cell lymphoma. PMID:25289101
Functional annotation of putative regulatory elements at cancer susceptibility Loci. PMID:25288875
miRIAD-integrating microRNA inter- and intragenic data. PMID:25288656
Role of microRNA modulation in the interferon-α/ribavirin suppression of HIV-1 in vivo. PMID:25275557
ViRBase: a resource for virus-host ncRNA-associated interactions. PMID:25274736
Integrated analysis of miRNA and mRNA expression profiles in response to Cd exposure in rice seedlings. PMID:25273267
MicroRNA-mediated networks underlie immune response regulation in papillary thyroid carcinoma. PMID:25263162
ADAR2 induces reproducible changes in sequence and abundance of mature microRNAs in the mouse brain. PMID:25260591
Statistical strategies for microRNAseq batch effect reduction. PMID:25258704
RNA expression profiling of human iPSC-derived cardiomyocytes in a cardiac hypertrophy model. PMID:25255322
Molecular mechanisms underlying the role of microRNAs in the chemoresistance of pancreatic cancer. PMID:25250326
The potential of microRNAs in personalized medicine against cancers. PMID:25243170
Noncoding RNAs as novel biomarkers in prostate cancer. PMID:25243154
MicroRNAs mediate dietary-restriction-induced longevity through PHA-4/FOXA and SKN-1/Nrf transcription factors. PMID:25242029
Are common fragile sites merely structural domains or highly organized "functional" units susceptible to oncogenic stress? PMID:25238782
The characterization of microRNA-mediated gene regulation as impacted by both target site location and seed match type. PMID:25238537
Single-Nucleotide Polymorphisms Within MicroRNAs Sequences and Their 3' UTR Target Sites May Regulate Gene Expression in Gastrointestinal Tract Cancers. PMID:25237569
LncRBase: an enriched resource for lncRNA information. PMID:25233092
IsomiR expression profiles in human lymphoblastoid cell lines exhibit population and gender dependencies. PMID:25229428
Identification of 14-3-3β gene as a novel miR-152 target using a proteome-based approach. PMID:25228695
Comparative expression profiling of miRNAs between the cytoplasmic male sterile line MeixiangA and its maintainer line MeixiangB during rice anther development. PMID:25228384
Tumor-suppressive miR148a is silenced by CpG island hypermethylation in IDH1-mutant gliomas. PMID:25224277
Rolling-circle transposons catalyze genomic innovation in a mammalian lineage. PMID:25223768
MicroRNA-146a and microRNA-146b expression and anti-inflammatory function in human airway smooth muscle. PMID:25217662
The crosstalk between IL-22 signaling and miR-197 in human keratinocytes. PMID:25208211
Discovery of Novel Leaf Rust Responsive microRNAs in Wheat and Prediction of Their Target Genes. PMID:25180085
MicroRNA-34 family expression in bovine gametes and preimplantation embryos. PMID:25179211
The role of microRNAs in human neural stem cells, neuronal differentiation and subtype specification. PMID:25172833
Patterns of miRNA expression in Arctic charr development. PMID:25170615
Conserved temporal patterns of microRNA expression in Drosophila support a developmental hourglass model. PMID:25169982
Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus. PMID:25168356
Different microRNA expression levels in gastric cancer depending on Helicobacter pylori infection. PMID:25167801
An exploration of evolution, maturation, expression and function relationships in mir-23 ∼ 27 ∼ 24 cluster. PMID:25157521
miRBase Tracker: keeping track of microRNA annotation changes. PMID:25157074
An integrated analysis of the SOX2 microRNA response program in human pluripotent and nullipotent stem cell lines. PMID:25156079
Computational Methods for MicroRNA Target Prediction. PMID:25153283
The diversity of small non-coding RNAs in the diatom Phaeodactylum tricornutum. PMID:25142710
miRNA profiles in plasma from patients with sleep disorders reveal dysregulation of miRNAs in narcolepsy and other central hypersomnias. PMID:25142559
Exploring microRNA-like small RNAs in the filamentous fungus Fusarium oxysporum. PMID:25141304
TraceRNA: a web application for competing endogenous RNA exploration. PMID:25140062
Identification of conserved and novel microRNAs in the Pacific oyster Crassostrea gigas by deep sequencing. PMID:25137038
The ability to suppress macrophage-mediated inflammation in orbital fat stem cells is controlled by miR-671-5p. PMID:25124290
Hsa-miR-195 targets PCMT1 in hepatocellular carcinoma that increases tumor life span. PMID:25119594
Identifying a polymorphic 'switch' that influences miRNAs' regulation of a myasthenia gravis risk pathway. PMID:25118158
Genome-wide association study combined with biological context can reveal more disease-related SNPs altering microRNA target seed sites. PMID:25106527
The clinicopathological significance of miR-133a in colorectal cancer. PMID:25104873
Polymorphisms in MicroRNAs are associated with survival in non-small cell lung cancer. PMID:25103824
Argonaute CLIP-Seq reveals miRNA targetome diversity across tissue types. PMID:25103560
Down-regulation of the antisense mitochondrial non-coding RNAs (ncRNAs) is a unique vulnerability of cancer cells and a potential target for cancer therapy. PMID:25100722
MicroRNAs in the Stressed Heart: Sorting the Signal from the Noise. PMID:25100019
Immuno-miRs: critical regulators of T-cell development, function and ageing. PMID:25093579
Prediction of miRNA-mRNA associations in Alzheimer's disease mice using network topology. PMID:25086961
Phen-Gen: combining phenotype and genotype to analyze rare disorders. PMID:25086502
MicroRNA-124 inhibits cellular proliferation and invasion by targeting Ets-1 in breast cancer. PMID:25085587
MixMir: microRNA motif discovery from gene expression data using mixed linear models. PMID:25081207
Small RNA profile in moso bamboo root and leaf obtained by high definition adapters. PMID:25079776
Different microRNA profiles in chronic epilepsy versus acute seizure mouse models. PMID:25078263
Identifying microRNA targets in different gene regions. PMID:25077573
Incorporating epigenetic data into the risk assessment process for the toxic metals arsenic, cadmium, chromium, lead, and mercury: strategies and challenges. PMID:25076963
Identification of discrete classes of small nucleolar RNA featuring different ends and RNA binding protein dependency. PMID:25074380
A critical appraisal of the use of microRNA data in phylogenetics. PMID:25071211
Underreplicated regions in Drosophila melanogaster are enriched with fast-evolving genes and highly conserved noncoding sequences. PMID:25062918
5' isomiR variation is of functional and evolutionary importance. PMID:25056318
A tri-component conservation strategy reveals highly confident microRNA-mRNA interactions and evolution of microRNA regulatory networks. PMID:25054916
Burgeoning evidence indicates that microRNAs were initially formed from transposable element sequences. PMID:25054081
miRdentify: high stringency miRNA predictor identifies several novel animal miRNAs. PMID:25053842
Draft sequencing and analysis of the genome of pufferfish Takifugu flavidus. PMID:25053628
APADB: a database for alternative polyadenylation and microRNA regulation events. PMID:25052703
Plant microRNA-target interaction identification model based on the integration of prediction tools and support vector machine. PMID:25051153
Identification and Function Prediction of Novel MicroRNAs in Laoshan Dairy Goats. PMID:25049792
An integrated analysis of miRNA, lncRNA, and mRNA expression profiles. PMID:25045664
The common marmoset genome provides insight into primate biology and evolution. PMID:25038751
Copy number variable microRNAs in schizophrenia and their neurodevelopmental gene targets. PMID:25034949
Detection of circulating parasite-derived microRNAs in filarial infections. PMID:25033073
Small molecules, big effects: the role of microRNAs in regulation of cardiomyocyte death. PMID:25032848
Upregulation of miR-181 decreases c-Fos and SIRT-1 in the hippocampus of 3xTg-AD mice. PMID:25024332
Transcriptomics identified a critical role for Th2 cell-intrinsic miR-155 in mediating allergy and antihelminth immunity. PMID:25024218
Identification and consequences of miRNA-target interactions--beyond repression of gene expression. PMID:25022902
Blood born miRNAs signatures that can serve as disease specific biomarkers are not significantly affected by overall fitness and exercise. PMID:25010680
Visualizing molecular profiles of glioblastoma with GBM-BioDP. PMID:25010047
High-throughput sequencing reveals small RNAs involved in ASGV infection. PMID:24998458
Development and performance of a targeted whole exome sequencing enrichment kit for the dog (Canis Familiaris Build 3.1). PMID:24998260
Transcriptome-wide analysis of microRNA expression in the malaria mosquito Anopheles gambiae. PMID:24997592
MicroRNA and hepatitis C virus--challenges in investigation and translation: a review of the literature. PMID:24996839
Large-scale investigation of human TF-miRNA relations based on coexpression profiles. PMID:24995316
Overexpression of microRNA-21 and microRNA-126 in the patients of bronchial asthma. PMID:24995087
A genome-wide screen for non-template nucleotides and isomiR repertoires in miRNAs indicates dynamic and versatile microRNAome. PMID:24993117
MicroRNA: important player in the pathobiology of multiple myeloma. PMID:24991558
Integrated multidimensional analysis is required for accurate prognostic biomarkers in colorectal cancer. PMID:24988459
MiR-103a-3p targets the 5' UTR of GPRC5A in pancreatic cells. PMID:24984703
Computational prediction of disease microRNAs in domestic animals. PMID:24970281
Single Nucleotide Polymorphisms Associated with MicroRNA Regulation. PMID:24970168
Design and Analysis for Studying microRNAs in Human Disease: A Primer on -Omic Technologies. PMID:24966218
Conserved microRNA editing in mammalian evolution, development and disease. PMID:24964909
Genome-wide identification and functional prediction of novel and drought-responsive lincRNAs in Populus trichocarpa. PMID:24948679
PGS: a tool for association study of high-dimensional microRNA expression data with repeated measures. PMID:24947752
Construction and analysis of regulatory genetic networks in cervical cancer based on involved microRNAs, target genes, transcription factors and host genes. PMID:24944708
Adaptive evolution of testis-specific, recently evolved, clustered miRNAs in Drosophila. PMID:24942624
Genome-wide mapping of miRNAs expressed in embryonic stem cells and pluripotent stem cells generated by different reprogramming strategies. PMID:24942538
HITS-CLIP and PAR-CLIP advance viral miRNA targetome analysis. PMID:24940765
Development of microRNA therapeutics is coming of age. PMID:24935956
The role of microRNA in castration-resistant prostate cancer. PMID:24935732
Genome-wide identification and characterization of long intergenic non-coding RNAs in Ganoderma lucidum. PMID:24932683
Certain adenylated non-coding RNAs, including 5' leader sequences of primary microRNA transcripts, accumulate in mouse cells following depletion of the RNA helicase MTR4. PMID:24926684
Sorting signal targeting mRNA into hepatic extracellular vesicles. PMID:24921245
Interplay between the oxidoreductase PDIA6 and microRNA-322 controls the response to disrupted endoplasmic reticulum calcium homeostasis. PMID:24917591
Structured RNAs and synteny regions in the pig genome. PMID:24917120
MicroRNA-382 induced by HIF-1α is an angiogenic miR targeting the tumor suppressor phosphatase and tensin homolog. PMID:24914051
Scan for Motifs: a webserver for the analysis of post-transcriptional regulatory elements in the 3' untranslated regions (3' UTRs) of mRNAs. PMID:24909639
miR-1202 is a primate-specific and brain-enriched microRNA involved in major depression and antidepressant treatment. PMID:24908571
miRror-Suite: decoding coordinated regulation by microRNAs. PMID:24907353
Regulatory and coding genome regions are enriched for trait associated variants in dairy and beef cattle. PMID:24903263
Towards a molecular characterization of autism spectrum disorders: an exome sequencing and systems approach. PMID:24893065
Whole-genome discovery of miRNAs and their targets in wheat (Triticum aestivum L.). PMID:24885911
A comparison of performance of plant miRNA target prediction tools and the characterization of features for genome-wide target prediction. PMID:24885295
MicroRNA expression profiling of the fifth-instar posterior silk gland of Bombyx mori. PMID:24885170
Molecular characterization of the SPL gene family in Populus trichocarpa. PMID:24884654
The discriminant power of RNA features for pre-miRNA recognition. PMID:24884650
A comparison of microRNA sequencing reproducibility and noise reduction using mirVana and TRIzol isolation methods. PMID:24878723
MicroRNAs involved in the lipid metabolism and their possible implications for atherosclerosis development and treatment. PMID:24876669
Lessons from miR-143/145: the importance of cell-type localization of miRNAs. PMID:24875473
Virus-encoded microRNAs facilitate gammaherpesvirus latency and pathogenesis in vivo. PMID:24865551
Structuring osteosarcoma knowledge: an osteosarcoma-gene association database based on literature mining and manual annotation. PMID:24865352
Arsenic-Associated Changes to the Epigenome: What Are the Functional Consequences? PMID:24860721
Circulating miRNAs as biomarkers for neurodegenerative disorders. PMID:24858274
Post-transcriptional regulation of gene expression in innate immunity. PMID:24854588
Decoding the regulatory landscape of medulloblastoma using DNA methylation sequencing. PMID:24847876
The PI3K/AKT/mTOR pathway is activated in gastric cancer with potential prognostic and predictive significance. PMID:24844205
Posttranscriptional Regulation of Intestinal Epithelial Tight Junction Barrier by RNA-binding Proteins and microRNAs. PMID:24843843
mRNA and Small RNA Transcriptomes Reveal Insights into Dynamic Homoeolog Regulation of Allopolyploid Heterosis in Nascent Hexaploid Wheat. PMID:24838975
Exosomes in human semen carry a distinctive repertoire of small non-coding RNAs with potential regulatory functions. PMID:24838567
MicroRNA Target Identification-Experimental Approaches. PMID:24832658
Analyzing the microRNA Transcriptome in Plants Using Deep Sequencing Data. PMID:24832228
The analysis of the inflorescence miRNome of the orchid Orchis italica reveals a DEF-like MADS-box gene as a new miRNA target. PMID:24832004
Micro-RNAs as clinical biomarkers and therapeutic targets in breast cancer: Quo vadis? PMID:24829853
Non-coding RNAs in epithelial immunity to Cryptosporidium infection. PMID:24828969
MicroRNA binding sites in C. elegans 3' UTRs. PMID:24827614
Versatile microRNA biogenesis in animals and their viruses. PMID:24823351
Role of microRNA in epithelial to mesenchymal transition and metastasis and clinical perspectives. PMID:24812525
DICER1 is essential for survival of postmitotic rod photoreceptor cells in mice. PMID:24812086
A survey of the small RNA population during far-red light-induced apical hook opening. PMID:24808898
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles. PMID:24798503
Beyond the genome: epigenetic mechanisms in lung remodeling. PMID:24789982
The effect of exposure to a high-fat diet on microRNA expression in the liver of blunt snout bream (Megalobrama amblycephala). PMID:24788396
Rapid and efficient isolation of high-quality small RNAs from recalcitrant plant species rich in polyphenols and polysaccharides. PMID:24787387
Characterization of microRNA transcriptome in lung cancer by next-generation deep sequencing. PMID:24785186
Arabidopsis miR156 Regulates Tolerance to Recurring Environmental Stress through SPL Transcription Factors. PMID:24769482
Endogenous small RNA clusters in plants. PMID:24769055
Co-activation of microRNAs by Zelda is essential for early Drosophila development. PMID:24764079
Derivation and characterization of Dicer- and microRNA-deficient human cells. PMID:24757167
RNA protein granules modulate tau isoform expression and induce neuronal sprouting. PMID:24755223
MicroRNA-519a is a novel oncomir conferring tamoxifen resistance by targeting a network of tumour-suppressor genes in ER+ breast cancer. PMID:24752803
MicroRNA repertoire for functional genome research in tilapia identified by deep sequencing. PMID:24752404
Extending the sRNAome of apple by next-generation sequencing. PMID:24752316
Integrated genomic characterization of adrenocortical carcinoma. PMID:24747642
A conserved RNA polymerase III promoter required for gammaherpesvirus TMER transcription and microRNA processing. PMID:24747015
Characterization of Withania somnifera leaf transcriptome and expression analysis of pathogenesis-related genes during salicylic acid signaling. PMID:24739900
Similarity in targets with REST points to neural and glioblastoma related miRNAs. PMID:24728992
Implication of sperm RNAs in transgenerational inheritance of the effects of early trauma in mice. PMID:24728267
Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza. PMID:24725266
Noncanonical microRNA (miRNA) biogenesis gives rise to retroviral mimics of lymphoproliferative and immunosuppressive host miRNAs. PMID:24713319
Evidence for the biogenesis of more than 1,000 novel human microRNAs. PMID:24708865
Nickel and epigenetic gene silencing. PMID:24705264
MicroRNA dysregulation in spinal cord injury: causes, consequences and therapeutics. PMID:24701199
Oxidative damage in the progression of chronic liver disease to hepatocellular carcinoma: an intricate pathway. PMID:24696595
Identification and characterization of microRNAs in normal equine tissues by Next Generation Sequencing. PMID:24695583
Concordant changes of plasma and kidney microRNA in the early stages of acute kidney injury: time course in a mouse model of bilateral renal ischemia-reperfusion. PMID:24695114
Sex-biased expression of microRNAs in Drosophila melanogaster. PMID:24694940
Integrative analysis of miRNA-mRNA and miRNA-miRNA interactions. PMID:24689063
Developmental neurotoxicity - challenges in the 21st century and in vitro opportunities. PMID:24687333
Potential regulatory role of microRNAs in the development of bovine gastrointestinal tract during early life. PMID:24682221
MicroRNAs in hematopoietic development. PMID:24678908
microRNAs in axon guidance. PMID:24672429
Intestinal epithelial barrier disruption through altered mucosal microRNA expression in human immunodeficiency virus and simian immunodeficiency virus infections. PMID:24672033
A genome-wide perspective of miRNAome in response to high temperature, salinity and drought stresses in Brassica juncea (Czern) L. PMID:24671003
Identification of microRNAs in the coral Stylophora pistillata. PMID:24658574
MicroRNAs, Major Players in B Cells Homeostasis and Function. PMID:24653724
Resources for functional genomics studies in Drosophila melanogaster. PMID:24653003
Evolution of the miR199-214 cluster and vertebrate skeletal development. PMID:24643020
Cnidarian microRNAs frequently regulate targets by cleavage. PMID:24642861
Sources of individual variability: miRNAs that predispose to neuropathic pain identified using genome-wide sequencing. PMID:24642266
MicroRNA-484 is more highly expressed in serum of early breast cancer patients compared to healthy volunteers. PMID:24641801
Seeing the forest for the trees: annotating small RNA producing genes in plants. PMID:24632306
Determinants beyond both complementarity and cleavage govern microR159 efficacy in Arabidopsis. PMID:24626050
Analysis options for high-throughput sequencing in miRNA expression profiling. PMID:24625073
Micro-managing the pancreatic β cell. PMID:24621504
SoyFN: a knowledge database of soybean functional networks. PMID:24618044
NCG 4.0: the network of cancer genes in the era of massive mutational screenings of cancer genomes. PMID:24608173
Forkhead box C2 promoter variant c.-512C>T is associated with increased susceptibility to chronic venous diseases. PMID:24608096
Transcriptome microRNA profiling of bovine mammary epithelial cells challenged with Escherichia coli or Staphylococcus aureus bacteria reveals pathogen directed microRNA expression profiles. PMID:24606609
exomeSuite: Whole exome sequence variant filtering tool for rapid identification of putative disease causing SNVs/indels. PMID:24603341
Common features of microRNA target prediction tools. PMID:24600468
The effect of microRNAs in the regulation of human CYP3A4: a systematic study using a mathematical model. PMID:24594634
eRNA: a graphic user interface-based tool optimized for large data analysis from high-throughput RNA sequencing. PMID:24593312
CLOCK-controlled polyphonic regulation of circadian rhythms through canonical and noncanonical E-boxes. PMID:24591654
Parasite-derived microRNAs in host serum as novel biomarkers of helminth infection. PMID:24587461
Stability indicators in network reconstruction. PMID:24587057
The miRNA plasma signature in response to acute aerobic exercise and endurance training. PMID:24586268
MicroRNA editing facilitates immune elimination of HCMV infected cells. PMID:24586166
Novel blood-based microRNA biomarker panel for early diagnosis of pancreatic cancer. PMID:24578785
MicroRNAs regulate neuronal plasticity and are involved in pain mechanisms. PMID:24574967
A genotoxic stress-responsive miRNA, miR-574-3p, delays cell growth by suppressing the enhancer of rudimentary homolog gene in vitro. PMID:24566139
Integrating microRNA target predictions for the discovery of gene regulatory networks: a semi-supervised ensemble learning approach. PMID:24564296
Laminar and temporal expression dynamics of coding and noncoding RNAs in the mouse neocortex. PMID:24561256
pY RNA1-s2: a highly retina-enriched small RNA that selectively binds to Matrin 3 (Matr3). PMID:24558381
Brain microRNAs and insights into biological functions and therapeutic potential of brain enriched miRNA-128. PMID:24555688
Identification of novel microRNA regulatory pathways associated with heterogeneous prostate cancer. PMID:24555436
Extensive sequence variation in the 3' untranslated region of the KRAS gene in lung and ovarian cancer cases. PMID:24552817
MicroRNA-target binding structures mimic microRNA duplex structures in humans. PMID:24551166
Multiple tumor suppressor microRNAs regulate telomerase and TCF7, an important transcriptional regulator of the Wnt pathway. PMID:24551047
Navigating the multilayered organization of eukaryotic signaling: a new trend in data integration. PMID:24550716
MicroRNA-like viral small RNA from Dengue virus 2 autoregulates its replication in mosquito cells. PMID:24550303
The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle. PMID:24548928
Hypermethylation of miR-203 in endometrial carcinomas. PMID:24530564
Post-transcriptional regulation of human breast cancer cell proteome by unliganded estrogen receptor β via microRNAs. PMID:24525454
Identification of novel, highly expressed retroviral microRNAs in cells infected by bovine foamy virus. PMID:24522910
Stable overexpression of miR-17 enhances recombinant protein production of CHO cells. PMID:24518263
Integrated analysis of microRNA and mRNA expression and association with HIF binding reveals the complexity of microRNA expression regulation under hypoxia. PMID:24517586
Evolutionary comparisons of miRNA regulation system in six model organisms. PMID:24515651
Rapid identification of regulatory microRNAs by miTRAP (miRNA trapping by RNA in vitro affinity purification). PMID:24510096
MicroRNAs: master regulators of drug resistance, stemness, and metastasis. PMID:24509937
Sequence-based design of bioactive small molecules that target precursor microRNAs. PMID:24509821
Systematic characterization of small RNAome during zebrafish early developmental stages. PMID:24507755
Computational developments in microRNA-regulated protein-protein interactions. PMID:24507415
Deep Sequencing Insights in Therapeutic shRNA Processing and siRNA Target Cleavage Precision. PMID:24496437
Integrated mRNA and microRNA transcriptome sequencing characterizes sequence variants and mRNA-microRNA regulatory network in nasopharyngeal carcinoma model systems. PMID:24490137
Serum microRNA-499 and microRNA-208a as biomarkers of acute myocardial infarction. PMID:24482699
Prioritizing disease-linked variants, genes, and pathways with an interactive whole-genome analysis pipeline. PMID:24478219
MicroRNAs in neuroblastoma: small-sized players with a large impact. PMID:24477657
Continuing analysis of microRNA origins: Formation from transposable element insertions and noncoding RNA mutations. PMID:24475369
The role of viral and host microRNAs in the Aujeszky's disease virus during the infection process. PMID:24475202
Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons. PMID:24475082
Composition of seed sequence is a major determinant of microRNA targeting patterns. PMID:24470575
MicroRNA regulation of bovine monocyte inflammatory and metabolic networks in an in vivo infection model. PMID:24470219
Micro-management of pluripotent stem cells. PMID:24470117
The panorama of miRNA-mediated mechanisms in mammalian cells. PMID:24468964
Tomato genomic resources database: an integrated repository of useful tomato genomic information for basic and applied research. PMID:24466070
Sequencing, De Novo assembly and annotation of the Colorado Potato Beetle, Leptinotarsa decemlineata, Transcriptome. PMID:24465841
MicroRNA-206: a promising theranostic marker. PMID:24465270
New microRNAs in Drosophila--birth, death and cycles of adaptive evolution. PMID:24465220
Transgenic plants that express the phytoplasma effector SAP11 show altered phosphate starvation and defense responses. PMID:24464367
The evolution of lncRNA repertoires and expression patterns in tetrapods. PMID:24463510
Seq and CLIP through the miRNA world. PMID:24460822
The Arabidopsis miR472-RDR6 silencing pathway modulates PAMP- and effector-triggered immunity through the post-transcriptional control of disease resistance genes. PMID:24453975
Systematic large-scale study of the inheritance mode of Mendelian disorders provides new insight into human diseasome. PMID:24448549
Robust global microRNA expression profiling using next-generation sequencing technologies. PMID:24445778
Comparative analysis of RNAi screening technologies at genome-scale reveals an inherent processing inefficiency of the plasmid-based shRNA hairpin. PMID:24433414
The first draft of the pigeonpea genome sequence. PMID:24431589
ISAAC - InterSpecies Analysing Application using Containers. PMID:24428905
MicroRNA function and dysregulation in bone tumors: the evidence to date. PMID:24426787
The light-induced transcriptome of the zebrafish pineal gland reveals complex regulation of the circadian clockwork by light. PMID:24423866
Identification of miRNAs and their target genes in developing maize ears by combined small RNA and degradome sequencing. PMID:24422852
Fast selection of miRNA candidates based on large-scale pre-computed MFE sets of randomized sequences. PMID:24418292
Single molecule fluorescence approaches shed light on intracellular RNAs. PMID:24417544
Transcriptome-wide analysis of UTRs in non-small cell lung cancer reveals cancer-related genes with SNV-induced changes on RNA secondary structure and miRNA target sites. PMID:24416147
Dissecting the expression landscape of RNA-binding proteins in human cancers. PMID:24410894
Accuracy of microRNA discovery pipelines in non-model organisms using closely related species genomes. PMID:24404190
In silico prediction and in vivo validation of Daphnia pulex microRNAs. PMID:24400076
MicroRNA-33b downregulates the differentiation and development of porcine preadipocytes. PMID:24398549
Identification and characterization of miRNAome in root, stem, leaf and tuber developmental stages of potato (Solanum tuberosum L.) by high-throughput sequencing. PMID:24397411
Hypoxia-induced deregulation of miR-126 and its regulative effect on VEGF and MMP-9 expression. PMID:24396282
New wheat microRNA using whole-genome sequence. PMID:24395439
Methods and matrices: approaches to identifying miRNAs for nasopharyngeal carcinoma. PMID:24393330
Molecular mechanisms of regulation and action of microRNA-199a in testicular germ cell tumor and glioblastomas. PMID:24391856
MicroRNAs in sensorineural diseases of the ear. PMID:24391537
Transcriptome-wide discovery of microRNA binding sites in human brain. PMID:24389009
MicroRNA control of high-density lipoprotein metabolism and function. PMID:24385511
Epigenetic regulation of the DLK1-MEG3 microRNA cluster in human type 2 diabetic islets. PMID:24374217
Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon. PMID:24367943
Genetic variants in NAMPT predict bladder cancer risk and prognosis in individuals from southwest Chinese Han group. PMID:24363084
Argonaute2 mediates compensatory expansion of the pancreatic β cell. PMID:24361012
A coregulatory network of NR2F1 and microRNA-140. PMID:24349493
CyTargetLinker: a cytoscape app to integrate regulatory interactions in network analysis. PMID:24340000
Deciphering small noncoding RNAs during the transition from dormant embryo to germinated embryo in Larches (Larix leptolepis). PMID:24339932
Signature of circulating microRNAs as potential biomarkers in vulnerable coronary artery disease. PMID:24339880
Multiple rice microRNAs are involved in immunity against the blast fungus Magnaporthe oryzae. PMID:24335508
Genome-wide characterization of microRNA in foxtail millet (Setaria italica). PMID:24330712
iMir: an integrated pipeline for high-throughput analysis of small non-coding RNA data obtained by smallRNA-Seq. PMID:24330401
Differentially expressed transcripts and dysregulated signaling pathways and networks in African American breast cancer. PMID:24324792
Computational Identification of MicroRNAs from the Expressed Sequence Tags of Toxic Dinoflagellate Alexandrium Tamarense. PMID:24324323
Fine mapping of variants associated with endometriosis in the WNT4 region on chromosome 1p36. PMID:24319535
CNVs-microRNAs interactions demonstrate unique characteristics in the human genome. An interspecies in silico analysis. PMID:24312536
Genome-wide multi-omics profiling of colorectal cancer identifies immune determinants strongly associated with relapse. PMID:24312117
MicroRNAs as tools to predict glucocorticoid response in inflammatory bowel diseases. PMID:24307788
Expression of herpes simplex virus 1 microRNAs in cell culture models of quiescent and latent infection. PMID:24307587
miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions. PMID:24304892
Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments. PMID:24304889
starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data. PMID:24297251
The effect of miRNA-122 in regulating fat deposition in a cell line model. PMID:24288170
Single nucleotide polymorphisms in microRNA binding sites of oncogenes: implications in cancer and pharmacogenomics. PMID:24286505
rSNPBase: a database for curated regulatory SNPs. PMID:24285297
Composition and expression of conserved microRNA genes in diploid cotton (Gossypium) species. PMID:24281048
Genome-wide identification and analysis of miRNA-related single nucleotide polymorphisms (SNPs) in rice. PMID:24280131
miRBase: annotating high confidence microRNAs using deep sequencing data. PMID:24275495
Protein-driven inference of miRNA-disease associations. PMID:24273243
Deep sequencing of small RNA repertoires in mice reveals metabolic disorders-associated hepatic miRNAs. PMID:24260478
RefSeq: an update on mammalian reference sequences. PMID:24259432
The role of microRNAs in hepatocarcinogenesis: current knowledge and future prospects. PMID:24258409
Construction of microRNA functional families by a mixture model of position weight matrices. PMID:24255813
miR-203, a tumor suppressor frequently down-regulated by promoter hypermethylation in rhabdomyosarcoma. PMID:24247238
High-throughput sequencing identification of novel and conserved miRNAs in the Brassica oleracea leaves. PMID:24245539
miRNEST 2.0: a database of plant and animal microRNAs. PMID:24243848
MicroRNA-related sequence variations in human cancers. PMID:24241281
Nonsense-mediated mRNA decay: inter-individual variability and human disease. PMID:24239855
Expression analysis and in silico characterization of intronic long noncoding RNAs in renal cell carcinoma: emerging functional associations. PMID:24238219
MicroRNA levels are modulated in Aedes aegypti after exposure to Dengue-2. PMID:24237456
Cross-kingdom sequence similarities between human micro-RNAs and plant viruses. PMID:24228136
iSubgraph: integrative genomics for subgroup discovery in hepatocellular carcinoma using graph mining and mixture models. PMID:24223834
Comprehensive analysis of single nucleotide polymorphisms in human microRNAs. PMID:24223755
Intrinsic features in microRNA transcriptomes link porcine visceral rather than subcutaneous adipose tissues to metabolic risk. PMID:24223210
NPInter v2.0: an updated database of ncRNA interactions. PMID:24217916
Assembly information services in the European Nucleotide Archive. PMID:24214989
TALEN-based knockout library for human microRNAs. PMID:24213537
The involvement of microRNAs in major depression, suicidal behavior, and related disorders: a focus on miR-185 and miR-491-3p. PMID:24213247
The complete exosome workflow solution: from isolation to characterization of RNA cargo. PMID:24205503
Identification and characterization of microRNAs in the leaf of ma bamboo (Dendrocalamus latiflorus) by deep sequencing. PMID:24205306
Influence of plasma processing on recovery and analysis of circulating nucleic acids. PMID:24205045
Identification of microRNAs in wool follicles during anagen, catagen, and telogen phases in Tibetan sheep. PMID:24204975
Emerging biomarkers in glioblastoma. PMID:24202336
Distinct microRNA expression profile and targeted biological pathways in functional myeloid-derived suppressor cells induced by Δ9-tetrahydrocannabinol in vivo: regulation of CCAAT/enhancer-binding protein α by microRNA-690. PMID:24202177
Functional analysis of microRNA and transcription factor synergistic regulatory network based on identifying regulatory motifs in non-small cell lung cancer. PMID:24200043
Genetics and epigenetics of arrhythmia and heart failure. PMID:24198825
Biases in small RNA deep sequencing data. PMID:24198247
Comprehensive analysis of the functional microRNA-mRNA regulatory network identifies miRNA signatures associated with glioma malignant progression. PMID:24194606
An integrated evolutionary analysis of miRNA-lncRNA in mammals. PMID:24186852
Identification and characterization of the microRNA transcriptome of a moth orchid Phalaenopsis aphrodite. PMID:24173913
Functional transcriptomics in the post-ENCODE era. PMID:24172201
MicroRNA associated with dyslipidemia and coronary disease in humans. PMID:24170031
PolymiRTS Database 3.0: linking polymorphisms in microRNAs and their target sites with human diseases and biological pathways. PMID:24163105
High-throughput sequencing of small RNA transcriptomes reveals critical biological features targeted by microRNAs in cell models used for squamous cell cancer research. PMID:24160351
A systematic analysis of a mi-RNA inter-pathway regulatory motif. PMID:24152805
HAMR: high-throughput annotation of modified ribonucleotides. PMID:24149843
Rational design of microRNA-siRNA chimeras for multifunctional target suppression. PMID:24145823
Identification and annotation of small RNA genes using ShortStack. PMID:24139974
A deletion polymorphism in the Caenorhabditis elegans RIG-I homolog disables viral RNA dicing and antiviral immunity. PMID:24137537
microRNA and gene networks in human pancreatic cancer. PMID:24137477
Identification of differentially expressed microRNAs in human hepatocellular adenoma associated with type I glycogen storage disease: a potential utility as biomarkers. PMID:24129885
Synergetic regulatory networks mediated by oncogene-driven microRNAs and transcription factors in serous ovarian cancer. PMID:24129674
Exploration of miRNA families for hypotheses generation. PMID:24126940
Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals. PMID:24119094
Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. PMID:24119003
Partially penetrant postnatal lethality of an epithelial specific MicroRNA in a mouse knockout. PMID:24116130
Performance comparison of digital microRNA profiling technologies applied on human breast cancer cell lines. PMID:24116077
Identification of miRNAs and their targets in tea (Camellia sinensis). PMID:24101208
Pleiotropic constraints, expression level, and the evolution of miRNA sequences. PMID:24100521
High-efficiency RNA cloning enables accurate quantification of miRNA expression by deep sequencing. PMID:24098942
"A draft Musa balbisiana genome sequence for molecular genetics in polyploid, inter- and intra-specific Musa hybrids". PMID:24094114
Age-related changes in microRNA levels in serum. PMID:24088671
Dynamic evolution of rht-1 homologous regions in grass genomes. PMID:24086561
Next-generation survey sequencing and the molecular organization of wheat chromosome 6B. PMID:24086083
Characteristics of microRNAs enriched in specific cell types and primary tissue types in solid organs. PMID:24085797
Regulation of MIR genes in response to abiotic stress in Hevea brasiliensis. PMID:24084713
In-Silico Algorithms for the Screening of Possible microRNA Binding Sites and Their Interactions. PMID:24082822
Imprinted and X-linked non-coding RNAs as potential regulators of human placental function. PMID:24081302
MicroRNAs in cancer. PMID:24079833
Simultaneous Detection of Different MicroRNA Types Using the ZIP-Code Array System. PMID:24078866
Analysis of the microRNA transcriptome and expression of different isomiRs in human peripheral blood mononuclear cells. PMID:24073671
Sex-biased expression of microRNAs in Schistosoma mansoni. PMID:24069470
In silico identification and characterization of conserved miRNAs and their target genes in sweet potato (Ipomoea batatas L.) expressed sequence tags (ESTs). PMID:24067297
Small RNA profiling of Xenopus embryos reveals novel miRNAs and a new class of small RNAs derived from intronic transposable elements. PMID:24065776
Relationship between differential hepatic microRNA expression and decreased hepatic cytochrome P450 3A activity in cirrhosis. PMID:24058572
An integrated transcriptome and epigenome analysis identifies a novel candidate gene for pancreatic cancer. PMID:24053169
Beta cell 5'-shifted isomiRs are candidate regulatory hubs in type 2 diabetes. PMID:24039891
Genome-wide analysis of miRNA-mRNA interactions in marrow stromal cells. PMID:24038734
Transcriptome and genome sequencing uncovers functional variation in humans. PMID:24037378
Identification and characterisation of microRNAs in young adults of Angiostrongylus cantonensis via a deep-sequencing approach. PMID:24037191
Substantial loss of conserved and gain of novel MicroRNA families in flatworms. PMID:24025793
Diagnostic and prognostic value of plasma microRNA deregulation in nasopharyngeal carcinoma. PMID:24025417
Expansion of ruminant-specific microRNAs shapes target gene expression divergence between ruminant and non-ruminant species. PMID:24020371
A genome-wide identification and characterization of mircoRNAs and their targets in 'Suli' pear (Pyrus pyrifolia white pear group). PMID:24013795
Comparative oncogenomic analysis of copy number alterations in human and zebrafish tumors enables cancer driver discovery. PMID:24009526
Analysis of serum exosomal microRNAs and clinicopathologic features of patients with pancreatic adenocarcinoma. PMID:24007214
Comparative evaluation of miRNA expression between in vitro and in vivo airway epithelium demonstrates widespread differences. PMID:24001474
MiR-429 up-regulation induces apoptosis and suppresses invasion by targeting Bcl-2 and SP-1 in esophageal carcinoma. PMID:23999873
Illuminating microRNA Transcription from the Epigenome. PMID:23997652
Involvement of microRNA-related regulatory pathways in the glucose-mediated control of Arabidopsis early seedling development. PMID:23997203
Multiple RNA recognition patterns during microRNA biogenesis in plants. PMID:23990609
Design of siRNA Therapeutics from the Molecular Scale. PMID:23976875
Alterations of DNA methylome in human bladder cancer. PMID:23975266
Principles of miRNA-target regulation in metazoan models. PMID:23965954
The detection of microRNA associated with Alzheimer's disease in biological fluids using next-generation sequencing technologies. PMID:23964286
Small RNA-mediated regulation of host-pathogen interactions. PMID:23958954
PROmiRNA: a new miRNA promoter recognition method uncovers the complex regulation of intronic miRNAs. PMID:23958307
Characterization and evolution of conserved MicroRNA through duplication events in date palm (Phoenix dactylifera). PMID:23951162
MicroRNAs may solve the mystery of chronic hepatitis B virus infection. PMID:23946591
From microRNA functions to microRNA therapeutics: novel targets and novel drugs in breast cancer research and treatment (Review). PMID:23939688
miRNA and miRNA target genes in copy number variations occurring in individuals with intellectual disability. PMID:23937676
Identification and validation of human papillomavirus encoded microRNAs. PMID:23936163
Mammalian miRNA curation through next-generation sequencing. PMID:23935604
MicroRNA as therapeutic targets for treatment of depression. PMID:23935365
Sequencing and characterisation of an extensive Atlantic salmon (Salmo salar L.) microRNA repertoire. PMID:23922936
Genome-wide analysis of small RNA and novel microRNA discovery during fiber and seed initial development in Gossypium hirsutum. L. PMID:23922789
MicroRNA expression changes during interferon-beta treatment in the peripheral blood of multiple sclerosis patients. PMID:23921681
CHO microRNA engineering is growing up: recent successes and future challenges. PMID:23916872
The evolving understanding of microRNA in bladder cancer. PMID:23911686
MicroRNA-mediated regulation of T helper cell differentiation and plasticity. PMID:23907446
miR-106b fine tunes ATG16L1 expression and autophagic activity in intestinal epithelial HCT116 cells. PMID:23899543
MicroRNA regulate immune pathways in T-cells in multiple sclerosis (MS). PMID:23895517
A blood based 12-miRNA signature of Alzheimer disease patients. PMID:23895045
Transcriptome-wide identification and characterization of microRNAs from castor bean (Ricinus communis L.). PMID:23894571
Genome-wide identification, molecular cloning, expression profiling and posttranscriptional regulation analysis of the Argonaute gene family in Salvia miltiorrhiza, an emerging model medicinal plant. PMID:23889895
miR-20b, miR-98, miR-125b-1*, and let-7e* as new potential diagnostic biomarkers in ulcerative colitis. PMID:23885139
The KUPNetViz: a biological network viewer for multiple -omics datasets in kidney diseases. PMID:23883183
The impact of age, biogenesis, and genomic clustering on Drosophila microRNA evolution. PMID:23882112
Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions. PMID:23879659
Inferring potential microRNA-microRNA associations based on targeting propensity and connectivity in the context of protein interaction network. PMID:23874989
Comprehensive microRNA analysis identifies miR-24 and miR-125a-5p as plasma biomarkers for rheumatoid arthritis. PMID:23874885
Large-scale screens of miRNA-mRNA interactions unveiled that the 3'UTR of a gene is targeted by multiple miRNAs. PMID:23874542
MicroRNA discovery by similarity search to a database of RNA-seq profiles. PMID:23874353
Weaker control of the electrical properties of cerebellar granule cells by tonically active GABAA receptors in the Ts65Dn mouse model of Down's syndrome. PMID:23870245
Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach. PMID:23865519
MREdictor: a two-step dynamic interaction model that accounts for mRNA accessibility and Pumilio binding accurately predicts microRNA targets. PMID:23863844
Extracellular microRNAs in urologic malignancies: chances and challenges. PMID:23863690
Genome-wide annotation of genes and noncoding RNAs of foxtail millet in response to simulated drought stress by deep sequencing. PMID:23860794
A novel epigenetic CREB-miR-373 axis mediates ZIP4-induced pancreatic cancer growth. PMID:23857777
MicroRNA-124 suppresses the transactivation of nuclear factor of activated T cells by targeting multiple genes and inhibits the proliferation of pulmonary artery smooth muscle cells. PMID:23853098
Viability, longevity, and egg production of Drosophila melanogaster are regulated by the miR-282 microRNA. PMID:23852386
Identification of microRNAs dysregulated in cellular senescence driven by endogenous genotoxic stress. PMID:23852002
CoLIde: a bioinformatics tool for CO-expression-based small RNA Loci Identification using high-throughput sequencing data. PMID:23851377
Abundances of microRNAs in human cells can be estimated as a function of the abundances of YRHB and RHHK tetranucleotides in these microRNAs as an ill-posed inverse problem solution. PMID:23847649
Influence of microRNA on the maintenance of human iron metabolism. PMID:23846788
The miRNA pathway controls rapid changes in activity-dependent synaptic structure at the Drosophila melanogaster neuromuscular junction. PMID:23844193
Clear cell renal cell carcinoma associated microRNA expression signatures identified by an integrated bioinformatics analysis. PMID:23841900
Identification of microRNA 395a in 24-epibrassinolide-regulated root growth of Arabidopsis thaliana using microRNA arrays. PMID:23839095
The locus of microRNA-10b: a critical target for breast cancer insurgence and dissemination. PMID:23839045
miR-182 and miR-10a are key regulators of Treg specialisation and stability during Schistosome and Leishmania-associated inflammation. PMID:23825948
Phytoplasma-Responsive microRNAs Modulate Hormonal, Nutritional, and Stress Signalling Pathways in Mexican Lime Trees. PMID:23824690
Quantification of microRNA expression with next-generation sequencing. PMID:23821442
Fine-tuning of microRNA-mediated repression of mRNA by splicing-regulated and highly repressive microRNA recognition element. PMID:23819653
MicroRNA-339 and microRNA-556 regulate Klotho expression in vitro. PMID:23818104
Distinctive microRNA expression signatures in proton-irradiated mice. PMID:23817773
Kraken: a set of tools for quality control and analysis of high-throughput sequence data. PMID:23816787
Competition between virus-derived and endogenous small RNAs regulates gene expression in Caenorhabditis elegans. PMID:23811144
MicroRNA networks regulate development of brown adipocytes. PMID:23809233
Effective classification of microRNA precursors using feature mining and AdaBoost algorithms. PMID:23808606
miReader: Discovering Novel miRNAs in Species without Sequenced Genome. PMID:23805282
miRNAs mediate SnRK1-dependent energy signaling in Arabidopsis. PMID:23802004
Distinctive profile of IsomiR expression and novel microRNAs in rat heart left ventricle. PMID:23799049
The 5'-3' exoribonuclease Pacman (Xrn1) regulates expression of the heat shock protein Hsp67Bc and the microRNA miR-277-3p in Drosophila wing imaginal discs. PMID:23792537
In-depth characterization of the microRNA transcriptome in normal thyroid and papillary thyroid carcinoma. PMID:23783103
Distinct microRNAs expression profile in primary biliary cirrhosis and evaluation of miR 505-3p and miR197-3p as novel biomarkers. PMID:23776611
Global profiling in vestibular schwannomas shows critical deregulation of microRNAs and upregulation in those included in chromosomal region 14q32. PMID:23776562
miRspring: a compact standalone research tool for analyzing miRNA-seq data. PMID:23775795
Clusters of microRNAs emerge by new hairpins in existing transcripts. PMID:23775791
Viral categorization and discovery in human circulation by transcriptome sequencing. PMID:23764402
Genome-wide and species-wide in silico screening for intragenic MicroRNAs in human, mouse and chicken. PMID:23762306
Actin-binding protein regulation by microRNAs as a novel microbial strategy to modulate phagocytosis by host cells: the case of N-Wasp and miR-142-3p. PMID:23760605
Potentiality of a triple microRNA classifier: miR-193a-3p, miR-23a and miR-338-5p for early detection of colorectal cancer. PMID:23758639
Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa. PMID:23754401
Molecular imaging strategies for in vivo tracking of microRNAs: a comprehensive review. PMID:23745564
Using microRNA as an alternative treatment for hyperlipidemia and cardiovascular disease: cardio-miRs in the pipeline. PMID:23743768
Computational identification and evolutionary relationships of the microRNA gene cluster miR-71/2 in protostomes. PMID:23740160
Arabidopsis ARGONAUTE7 selects miR390 through multiple checkpoints during RISC assembly. PMID:23732541
Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes. PMID:23729632
PMTED: a plant microRNA target expression database. PMID:23725466
Signal transducer and activator of transcription (STAT)-3 regulates microRNA gene expression in chronic lymphocytic leukemia cells. PMID:23725032
The prognostic value of microRNAs varies with patient race/ethnicity and stage of colorectal cancer. PMID:23719259
Insilico profiling of microRNAs in Korean ginseng (Panax ginseng Meyer). PMID:23717176
Role of microRNAs in the immune system, inflammation and cancer. PMID:23716978
miRmap web: Comprehensive microRNA target prediction online. PMID:23716633
Base Composition Characteristics of Mammalian miRNAs. PMID:23710337
NRF2-ome: an integrated web resource to discover protein interaction and regulatory networks of NRF2. PMID:23710289
Comprehensive investigation of microRNAs enhanced by analysis of sequence variants, expression patterns, ARGONAUTE loading, and target cleavage. PMID:23709668
The microRNA-200 family targets multiple non-small cell lung cancer prognostic markers in H1299 cells and BEAS-2B cells. PMID:23708087
Identification of miRNAs associated with sexual maturity in chicken ovary by Illumina small RNA deep sequencing. PMID:23705682
Comparative transcriptome analysis of small noncoding RNAs in different stages of Trypanosoma brucei. PMID:23704326
PEpiD: a prostate epigenetic database in mammals. PMID:23696878
Dissection of protein interactomics highlights microRNA synergy. PMID:23691029
Human ESC/iPSC-based "Omics" and Bioinformatics for Translational Research. PMID:23682293
DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows. PMID:23680784
Identification of circulating microRNAs in HNF1A-MODY carriers. PMID:23674172
Upregulation of a small vault RNA (svtRNA2-1a) is an early event in Parkinson disease and induces neuronal dysfunction. PMID:23673382
Characterization of human plasma-derived exosomal RNAs by deep sequencing. PMID:23663360
Candidate gene association studies: a comprehensive guide to useful in silico tools. PMID:23656885
MicroRNA-424-5p suppresses the expression of SOCS6 in pancreatic cancer. PMID:23653113
GeneSetDB: A comprehensive meta-database, statistical and visualisation framework for gene set analysis. PMID:23650583
miRNA biogenesis enzyme Drosha is required for vascular smooth muscle cell survival. PMID:23637774
MicroRNA in Aging: From Discovery to Biology. PMID:23633914
Circulating microRNAs as potential new biomarkers for prostate cancer. PMID:23632485
Citrus tristeza virus: Evolution of Complex and Varied Genotypic Groups. PMID:23630519
Characterization of novel precursor miRNAs using next generation sequencing and prediction of miRNA targets in Atlantic halibut. PMID:23626677
Regulation of cardiac microRNAs by cardiac microRNAs. PMID:23625950
Current progress for the use of miRNAs in glioblastoma treatment. PMID:23625340
Prediction and identification of natural antisense transcripts and their small RNAs in soybean (Glycine max). PMID:23617936
Skeletal muscle calpain acts through nitric oxide and neural miRNAs to regulate acetylcholine release in motor nerve terminals. PMID:23616539
MicroRNA-449a enhances radiosensitivity in CL1-0 lung adenocarcinoma cells. PMID:23614048
MicroRNA transcriptomes relate intermuscular adipose tissue to metabolic risk. PMID:23609494
Identification of serum and tissue micro-RNA expression profiles in different stages of inflammatory bowel disease. PMID:23607522
Computational identification of functional introns: high positional conservation of introns that harbor RNA genes. PMID:23605046
MicroRNAs as pharmacological targets in endothelial cell function and dysfunction. PMID:23603154
MicroRNA-1291-mediated silencing of IRE1α enhances Glypican-3 expression. PMID:23598528
Prioritization of genetic variants in the microRNA regulome as functional candidates in genome-wide association studies. PMID:23595788
NF-Y coassociates with FOS at promoters, enhancers, repetitive elements, and inactive chromatin regions, and is stereo-positioned with growth-controlling transcription factors. PMID:23595228
Genome-wide identification of bone metastasis-related microRNAs in lung adenocarcinoma by high-throughput sequencing. PMID:23593434
microRNAs and ceRNAs: RNA networks in pathogenesis of cancer. PMID:23592905
In-depth analysis of the interaction of HIV-1 with cellular microRNA biogenesis and effector mechanisms. PMID:23592263
A significant fraction of 21-nucleotide small RNA originates from phased degradation of resistance genes in several perennial species. PMID:23580593
Long-lasting alterations to DNA methylation and ncRNAs could underlie the effects of fetal alcohol exposure in mice. PMID:23580197
Comparison of non-coding RNAs in human and canine cancer. PMID:23579348
Transcriptome analysis reveals ginsenosides biosynthetic genes, microRNAs and simple sequence repeats in Panax ginseng C. A. Meyer. PMID:23577925
Circulating MicroRNAs as Biomarkers of Prostate Cancer: The State of Play. PMID:23577261
Integrated "omics" profiling indicates that miRNAs are modulators of the ontogenetic venom composition shift in the Central American rattlesnake, Crotalus simus simus. PMID:23575160
Plasma miRNAs as biomarkers to identify patients with castration-resistant metastatic prostate cancer. PMID:23574937
Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis. PMID:23570526
MicroRNA-376a sensitizes cells following DNA damage by downregulating MEPE expression. PMID:23570370
Next-generation sequencing and microarray-based interrogation of microRNAs from formalin-fixed, paraffin-embedded tissue: preliminary assessment of cross-platform concordance. PMID:23562991
Genetic regulation of human adipose microRNA expression and its consequences for metabolic traits. PMID:23562819
The role of the Arabidopsis Exosome in siRNA-independent silencing of heterochromatic loci. PMID:23555312
RNA regulation of the immune system. PMID:23550634
Prognostic role of microRNA-181a/b in hematological malignancies: a meta-analysis. PMID:23533632
Alternative processing of the U2 small nuclear RNA produces a 19-22nt fragment with relevance for the detection of non-small cell lung cancer in human serum. PMID:23527303
Characterization and comparative profiling of miRNAs in invasive Bemisia tabaci (Gennadius) B and Q. PMID:23527280
Exome and whole-genome sequencing of esophageal adenocarcinoma identifies recurrent driver events and mutational complexity. PMID:23525077
Next-generation sequencing identifies microRNAs that associate with pathogenic autoimmune neuroinflammation in rats. PMID:23514736
Complexity of microRNA function and the role of isomiRs in lipid homeostasis. PMID:23505317
MicroRNAs: an emerging science in cancer epigenetics. PMID:23497588
A heterozygous variant in the human cardiac miR-133 gene, MIR133A2, alters miRNA duplex processing and strand abundance. PMID:23497314
Characterization and differential expression of microRNAs in the ovaries of pregnant and non-pregnant goats (Capra hircus). PMID:23497306
HuntMi: an efficient and taxon-specific approach in pre-miRNA identification. PMID:23497112
miRTar Hunter: a prediction system for identifying human microRNA target sites. PMID:23475422
Next generation sequencing reveals the expression of a unique miRNA profile in response to a gram-positive bacterial infection. PMID:23472090
miR-34 is maternally inherited in Drosophila melanogaster and Danio rerio. PMID:23470996
Deciphering microRNA code in pain and inflammation: lessons from bladder pain syndrome. PMID:23463234
A global map for dissecting phenotypic variants in human lincRNAs. PMID:23463026
A deep sequencing approach to uncover the miRNOME in the human heart. PMID:23460909
MicroRNAs in the ionizing radiation response and in radiotherapy. PMID:23453900
Comparative analysis of microRNA promoters in Arabidopsis and rice. PMID:23453017
PASmiR: a literature-curated database for miRNA molecular regulation in plant response to abiotic stress. PMID:23448274
MicroRNAs and their putative targets in Brassica napus seed maturation. PMID:23448243
A functional genomics screen for microRNA regulators of NF-kappaB signaling. PMID:23448136
Identification of radiation-induced microRNA transcriptome by next-generation massively parallel sequencing. PMID:23447695
Multiclass relevance units machine: benchmark evaluation and application to small ncRNA discovery. PMID:23445533
Neurodevelopmental and neuropsychiatric disorders represent an interconnected molecular system. PMID:23439483
Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing. PMID:23437348
Four common polymorphisms in microRNAs and the risk of adult glioma in a Chinese case-control study. PMID:23430406
Poisson factor models with applications to non-normalized microRNA profiling. PMID:23428639
MicroRNAs play critical roles during plant development and in response to abiotic stresses. PMID:23412556
A common MicroRNA signature consisting of miR-133a, miR-139-3p, and miR-142-3p clusters bladder carcinoma in situ with normal umbrella cells. PMID:23410519
Systematic transcriptome wide analysis of lncRNA-miRNA interactions. PMID:23405074
A study of small RNAs from cerebral neocortex of pathology-verified Alzheimer's disease, dementia with lewy bodies, hippocampal sclerosis, frontotemporal lobar dementia, and non-demented human controls. PMID:23403535
Clinical implications of microRNAs in human glioblastoma. PMID:23403472
Global profiling of miRNAs and the hairpin precursors: insights into miRNA processing and novel miRNA discovery. PMID:23396444
pseudoMap: an innovative and comprehensive resource for identification of siRNA-mediated mechanisms in human transcribed pseudogenes. PMID:23396300
Computational identification and characterization of putative miRNAs in Heliothis virescens. PMID:23390350
Identification of a set of miRNAs differentially expressed in transiently TIA-depleted HeLa cells by genome-wide profiling. PMID:23387986
Next-generation sequencing of small RNAs from HIV-infected cells identifies phased microrna expression patterns and candidate novel microRNAs differentially expressed upon infection. PMID:23386435
A simple high-throughput technology enables gain-of-function screening of human microRNAs. PMID:23384178
Multi-platform analysis of microRNA expression measurements in RNA from fresh frozen and FFPE tissues. PMID:23382819
24 hours in the life of HIV-1 in a T cell line. PMID:23382686
MicroRNAs in human cancer. PMID:23377965
miRNA expression profile analysis in kidney of different porcine breeds. PMID:23372853
The miRNA profile of human pancreatic islets and beta-cells and relationship to type 2 diabetes pathogenesis. PMID:23372846
Potential roles of microRNAs in regulating long intergenic noncoding RNAs. PMID:23369519
A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing. PMID:23368412
Deep sequencing of maize small RNAs reveals a diverse set of microRNA in dry and imbibed seeds. PMID:23359822
Argonaute2 regulates the pancreatic β-cell secretome. PMID:23358505
MicroRNAs and the genetic network in aging. PMID:23353823
The sequence structures of human microRNA molecules and their implications. PMID:23349828
Network graph analysis of gene-gene interactions in genome-wide association study data. PMID:23346039
Polymorphisms in the gene regions of the adaptor complex LAMTOR2/LAMTOR3 and their association with breast cancer risk. PMID:23341997
MIR846 and MIR842 comprise a cistronic MIRNA pair that is regulated by abscisic acid by alternative splicing in roots of Arabidopsis. PMID:23341152
Approaches to manipulating microRNAs in neurogenesis. PMID:23335878
Structure, evolution and function of the bi-directionally transcribed iab-4/iab-8 microRNA locus in arthropods. PMID:23335784
SignaLink 2 - a signaling pathway resource with multi-layered regulatory networks. PMID:23331499
CluePedia Cytoscape plugin: pathway insights using integrated experimental and in silico data. PMID:23325622
Developmentally regulated expression and complex processing of barley pri-microRNAs. PMID:23324356
A brief primer on microRNAs and their roles in angiogenesis. PMID:23324117
Virus-encoded microRNAs: an overview and a look to the future. PMID:23308061
Identification of miRNA encoded by Jatropha curcas from EST and GSS. PMID:23299511
Identification of recurrence related microRNAs in hepatocellular carcinoma after surgical resection. PMID:23299437
Rice Annotation Project Database (RAP-DB): an integrative and interactive database for rice genomics. PMID:23299411
Inferring microRNA regulation of mRNA with partially ordered samples of paired expression data and exogenous prediction algorithms. PMID:23284698
Automatically clustering large-scale miRNA sequences: methods and experiments. PMID:23282099
Circularized synthetic oligodeoxynucleotides serve as promoterless RNA polymerase III templates for small RNA generation in human cells. PMID:23275570
MicroRNA precursors are not structurally robust but plastic. PMID:23275486
Evidence for small RNAs homologous to effector-encoding genes and transposable elements in the oomycete Phytophthora infestans. PMID:23272103
Genomewide analysis of intronic microRNAs in rice and Arabidopsis. PMID:23271017
CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize. PMID:23269663
Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression. PMID:23268654
Circulating microRNAs: promising candidates serving as novel biomarkers of acute hepatitis. PMID:23267332
MicroRNAs in the regulation of TLR and RIG-I pathways. PMID:23262976
CapSeq and CIP-TAP identify Pol II start sites and reveal capped small RNAs as C. elegans piRNA precursors. PMID:23260138
Oligo- and polymetastatic progression in lung metastasis(es) patients is associated with specific microRNAs. PMID:23251360
Complex role of microRNAs in HTLV-1 infections. PMID:23251140
Bioinformatics of Cancer ncRNA in High Throughput Sequencing: Present State and Challenges. PMID:23251139
Genetic and epigenetic variants influencing the development of nonalcoholic fatty liver disease. PMID:23236228
Genome-wide identification of miRNAs responsive to drought in peach (Prunus persica) by high-throughput deep sequencing. PMID:23227166
microRNA expression profile of peripheral blood mononuclear cells of Klinefelter syndrome. PMID:23226734
A catalogue of glioblastoma and brain MicroRNAs identified by deep sequencing. PMID:23215807
Plant MicroRNA Prediction by Supervised Machine Learning Using C5.0 Decision Trees. PMID:23209882
Zcchc11 uridylates mature miRNAs to enhance neonatal IGF-1 expression, growth, and survival. PMID:23209448
YM500: a small RNA sequencing (smRNA-seq) database for microRNA research. PMID:23203880
BSRD: a repository for bacterial small regulatory RNA. PMID:23203879
Plasma miR-17-5p, miR-20a and miR-22 are down-regulated in women with endometriosis. PMID:23203215
MicroRNAs as diagnostic biomarkers in gastric cancer. PMID:23202912
Predicting sRNAs and their targets in bacteria. PMID:23200137
Finding microRNA targets in plants: current status and perspectives. PMID:23200136
MicroRNAs in common human diseases. PMID:23200134
Biogenesis of mammalian microRNAs: a global view. PMID:23200133
An arrayed genome-scale lentiviral-enabled short hairpin RNA screen identifies lethal and rescuer gene candidates. PMID:23198867
MiRGator v3.0: a microRNA portal for deep sequencing, expression profiling and mRNA targeting. PMID:23193297
DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs. PMID:23193281
The Rice Genome Knowledgebase (RGKbase): an annotation database for rice comparative genomics and evolutionary biology. PMID:23193278
GenomeRNAi: a database for cell-based and in vivo RNAi phenotypes, 2013 update. PMID:23193271
MicroRNA-26a is strongly downregulated in melanoma and induces cell death through repression of silencer of death domains (SODD). PMID:23190898
SomamiR: a database for somatic mutations impacting microRNA function in cancer. PMID:23180788
From small to big: microRNAs as new players in medulloblastomas. PMID:23179395
Identifying miRNAs, targets and functions. PMID:23175680
MirSNP, a database of polymorphisms altering miRNA target sites, identifies miRNA-related SNPs in GWAS SNPs and eQTLs. PMID:23173617
Expression of small RNA in Aphis gossypii and its potential role in the resistance interaction with melon. PMID:23173035
Human microRNAs originated from two periods at accelerated rates in mammalian evolution. PMID:23171859
Small RNA and transcriptome deep sequencing proffers insight into floral gene regulation in Rosa cultivars. PMID:23171001
Integrated miRNA, mRNA and protein expression analysis reveals the role of post-transcriptional regulation in controlling CHO cell growth rate. PMID:23170974
The expression levels of microRNA-361-5p and its target VEGFA are inversely correlated in human cutaneous squamous cell carcinoma. PMID:23166713
Identification of novel and differentially expressed MicroRNAs of dairy goat mammary gland tissues using solexa sequencing and bioinformatics. PMID:23166677
Transcriptome sequencing and annotation for the Jamaican fruit bat (Artibeus jamaicensis). PMID:23166587
Identification and profiling of novel microRNAs in the Brassica rapa genome based on small RNA deep sequencing. PMID:23163954
DNA Methylation of Tumor Suppressive miRNAs in Non-Hodgkin's Lymphomas. PMID:23162567
ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data. PMID:23161675
High-throughput microRNA (miRNAs) arrays unravel the prognostic role of MiR-211 in pancreatic cancer. PMID:23155457
An arrayed RNA interference genome-wide screen identifies candidate genes involved in the MicroRNA 21 biogenesis pathway. PMID:23153064
MMpred: functional miRNA--mRNA interaction analyses by miRNA expression prediction. PMID:23151045
Big effects of small RNAs: a review of microRNAs in anxiety. PMID:23150170
Bioinformatic analysis of epigenetic and microRNA mediated regulation of drought responsive genes in rice. PMID:23145152
The loop position of shRNAs and pre-miRNAs is critical for the accuracy of dicer processing in vivo. PMID:23141545
Analysis of miR-376 RNA cluster members in the mouse inner ear. PMID:23136997
Computer-assisted annotation of murine Sertoli cell small RNA transcriptome. PMID:23136297
The functions of microRNAs in pluripotency and reprogramming. PMID:23131918
Rfam 11.0: 10 years of RNA families. PMID:23125362
Proteomics for understanding miRNA biology. PMID:23125164
Discovering the first microRNA-targeted drug. PMID:23109665
Depleting gene activities in early Drosophila embryos with the "maternal-Gal4-shRNA" system. PMID:23105012
Construction of short tandem target mimic (STTM) to block the functions of plant and animal microRNAs. PMID:23098881
Post-developmental microRNA expression is required for normal physiology, and regulates aging in parallel to insulin/IGF-1 signaling in C. elegans. PMID:23097426
miRandola: extracellular circulating microRNAs database. PMID:23094086
Integrative analysis of somatic mutations altering microRNA targeting in cancer genomes. PMID:23091610
Genome-wide analysis of mir-548 gene family reveals evolutionary and functional implications. PMID:23091353
OrbId: Origin-based identification of microRNA targets. PMID:23087843
An in vivo functional screen uncovers miR-150-mediated regulation of hematopoietic injury response. PMID:23084747
Identification of novel Oryza sativa miRNAs in deep sequencing-based small RNA libraries of rice infected with Rice stripe virus. PMID:23071571
miRNA regulons associated with synaptic function. PMID:23071543
Translation Efficiency in Upstream Region of microRNA Targets in Arabidopsis thaliana. PMID:23071387
Popular computational methods to assess multiprotein complexes derived from label-free affinity purification and mass spectrometry (AP-MS) experiments. PMID:23071097
TSGene: a web resource for tumor suppressor genes. PMID:23066107
Human RNA methyltransferase BCDIN3D regulates microRNA processing. PMID:23063121
Exploring the evolutionary differences of SBP-box genes targeted by miR156 and miR529 in plants. PMID:23054224
Effect of miR-451 on the biological behavior of the esophageal carcinoma cell line EC9706. PMID:23053883
Bioinformatic identification of novel elements potentially involved in messenger RNA fate control during spermatogenesis. PMID:23053435
Functional characterization of Drosophila microRNAs by a novel in vivo library. PMID:23051640
MicroRNA-target interactions: new insights from genome-wide approaches. PMID:23050973
Systematic analysis of microRNA targeting impacted by small insertions and deletions in human genome. PMID:23049969
miR-BAG: bagging based identification of microRNA precursors. PMID:23049860
MicroRNAs 125a and 455 repress lipoprotein-supported steroidogenesis by targeting scavenger receptor class B type I in steroidogenic cells. PMID:23045399
miR-EdiTar: a database of predicted A-to-I edited miRNA target sites. PMID:23044546
MiRmap: comprehensive prediction of microRNA target repression strength. PMID:23034802
Birth and expression evolution of mammalian microRNA genes. PMID:23034410
"Seed-Milarity" confers to hsa-miR-210 and hsa-miR-147b similar functional activity. PMID:23028679
Identification of conserved and novel microRNAs from Liriodendron chinense floral tissues. PMID:23028583
Global microRNA profiling of the mouse ventricles during development of severe hypertrophic cardiomyopathy and heart failure. PMID:23024758
Probing Evolutionary Biography of MicroRNAs and Associated Factors. PMID:23024606
MicroRNAs from the same precursor have different targeting properties. PMID:23016695
ncRNAclassifier: a tool for detection and classification of transposable element sequences in RNA hairpins. PMID:23009561
Sex differences in microRNA regulation of gene expression: no smoke, just miRs. PMID:23009289
Comprehensive molecular portraits of human breast tumours. PMID:23000897
Fibroblast growth factor (FGF) signaling during gastrulation negatively modulates the abundance of microRNAs that regulate proteins required for cell migration and embryo patterning. PMID:22995917
A unilateral negative feedback loop between miR-200 microRNAs and Sox2/E2F3 controls neural progenitor cell-cycle exit and differentiation. PMID:22993445
Computational analysis of noncoding RNAs. PMID:22991327
A comprehensive analysis of precursor microRNA cleavage by human Dicer. PMID:22984192
Epstein-barr virus and the pathogenesis of T and NK lymphoma: a mystery unsolved. PMID:22983913
Online tools for bioinformatics analyses in nutrition sciences. PMID:22983844
Dynamic expression of small RNA populations in larch (Larix leptolepis). PMID:22983700
Method for microRNA isolation from clinical serum samples. PMID:22982505
RhesusBase: a knowledgebase for the monkey research community. PMID:22965133
Small RNA deep sequencing reveals a distinct miRNA signature released in exosomes from prion-infected neuronal cells. PMID:22965126
SNPing cancer in the bud: microRNA and microRNA-target site polymorphisms as diagnostic and prognostic biomarkers in cancer. PMID:22964086
High-throughput sequencing and characterization of the small RNA transcriptome reveal features of novel and conserved microRNAs in Panax ginseng. PMID:22962612
LIN28 binds messenger RNAs at GGAGA motifs and regulates splicing factor abundance. PMID:22959275
Identification of circulating miRNA biomarkers based on global quantitative real-time PCR profiling. PMID:22958414
Prediction of conserved precursors of miRNAs and their mature forms by integrating position-specific structural features. PMID:22957063
Regulatory RNAs in the light of Drosophila genomics. PMID:22956639
Airway epithelial miRNA expression is altered in asthma. PMID:22955319
Profiling microRNAs in lung tissue from pigs infected with Actinobacillus pleuropneumoniae. PMID:22953717
Flexible and versatile as a chameleon-sophisticated functions of microRNA-199a. PMID:22942713
Deciphering the transcriptional regulation of microRNA genes in humans with ACTLocater. PMID:22941648
MicroRNAs in HIV-1 infection: an integration of viral and cellular interaction at the genomic level. PMID:22936931
A simple method for analyzing actives in random RNAi screens: introducing the "H Score" for hit nomination & gene prioritization. PMID:22934950
Roles of microRNAs in atherosclerosis and restenosis. PMID:22931291
RIsearch: fast RNA-RNA interaction search using a simplified nearest-neighbor energy model. PMID:22923300
Deregulation of type I IFN-dependent genes correlates with increased susceptibility to cytomegalovirus acute infection of dicer mutant mice. PMID:22916300
Large-scale identification of microRNA targets in murine Dgcr8-deficient embryonic stem cell lines. PMID:22912678
Preferential star strand biogenesis of pre-miR-24-2 targets PKC-alpha and suppresses cell survival in MCF-7 breast cancer cells. PMID:22911661
Identification of common carp (Cyprinus carpio) microRNAs and microRNA-related SNPs. PMID:22908890
MicroRNAs and neuronal development. PMID:22906916
Toward a combinatorial nature of microRNA regulation in human cells. PMID:22904063
Comparative analysis of somatic copy-number alterations across different human cancer types reveals two distinct classes of breakpoint hotspots. PMID:22899649
Current Progress on Understanding MicroRNAs in Glioblastoma Multiforme. PMID:22893786
Barcoded cDNA library preparation for small RNA profiling by next-generation sequencing. PMID:22885844
Characterization of microRNA expression profiles in normal and osteoarthritic human chondrocytes. PMID:22883423
MicroRNAs in Amoebozoa: deep sequencing of the small RNA population in the social amoeba Dictyostelium discoideum reveals developmentally regulated microRNAs. PMID:22875808
Analysis of plant-derived miRNAs in animal small RNA datasets. PMID:22873950
Integrative transcriptome analysis suggest processing of a subset of long non-coding RNAs to small RNAs. PMID:22871084
High throughput sequencing reveals novel and abiotic stress-regulated microRNAs in the inflorescences of rice. PMID:22862743
A Survey of MicroRNA Length Variants Contributing to miRNome Complexity in Peach (Prunus Persica L.). PMID:22855688
Characterization of microRNAs expression during maize seed development. PMID:22853295
Mechanistic Roles of Noncoding RNAs in Lung Cancer Biology and Their Clinical Implications. PMID:22852089
Selective extracellular vesicle-mediated export of an overlapping set of microRNAs from multiple cell types. PMID:22849433
Role of microRNA-182 in posterior uveal melanoma: regulation of tumor development through MITF, BCL2 and cyclin D2. PMID:22848417
MicroRNAs in Human Malignant Gliomas. PMID:22848219
Detection of miRNAs with a nanopore single-molecule counter. PMID:22845478
miRNA regulation in the early development of barley seed. PMID:22838835
Uncovering MicroRNA and Transcription Factor Mediated Regulatory Networks in Glioblastoma. PMID:22829753
A microRNA activity map of human mesenchymal tumors: connections to oncogenic pathways; an integrative transcriptomic study. PMID:22823907
Deep sequencing of RNA from immune cell-derived vesicles uncovers the selective incorporation of small non-coding RNA biotypes with potential regulatory functions. PMID:22821563
Extracellular small RNAs: what, where, why? PMID:22817753
Sorting the wheat from the chaff: identifying miRNAs in genomic survey sequences of Triticum aestivum chromosome 1AL. PMID:22815845
Role of MicroRNAs in Fibrosis. PMID:22802911
Epigenetics and miRNA emerge as key regulators of smooth muscle cell phenotype and function. PMID:22800879
'MicroRNA Targets', a new AthaMap web-tool for genome-wide identification of miRNA targets in Arabidopsis thaliana. PMID:22800758
POWRS: position-sensitive motif discovery. PMID:22792292
Let-7b regulates the expression of the growth hormone receptor gene in deletion-type dwarf chickens. PMID:22781587
MicroRNAs are exported from malignant cells in customized particles. PMID:22772984
Characterization of miRNAs in response to short-term waterlogging in three inbred lines of Zea mays. PMID:22768123
Identification and characterization of microRNA in the dairy goat (Capra hircus) mammary gland by Solexa deep-sequencing technology. PMID:22763736
Genome-wide search for miRNA-target interactions in Arabidopsis thaliana with an integrated approach. PMID:22759612
Computational identification and analysis of novel sugarcane microRNAs. PMID:22747909
miRNA expression profiling in migrating glioblastoma cells: regulation of cell migration and invasion by miR-23b via targeting of Pyk2. PMID:22745829
A miRNA-regulatory network explains how dysregulated miRNAs perturb oncogenic processes across diverse cancers. PMID:22745231
Myelin basic protein synthesis is regulated by small non-coding RNA 715. PMID:22744314
The microRNA Transcriptome of Human Cytomegalovirus (HCMV). PMID:22715351
Circulating microRNAs as novel and sensitive biomarkers of acute myocardial Infarction. PMID:22713968
Evolution of coding and non-coding genes in HOX clusters of a marsupial. PMID:22708672
Prioritizing cancer-related key miRNA-target interactions by integrative genomics. PMID:22705797
Hybridization-based reconstruction of small non-coding RNA transcripts from deep sequencing data. PMID:22705792
Apple miRNAs and tasiRNAs with novel regulatory networks. PMID:22704043
Postprandial regulation of hepatic microRNAs predicted to target the insulin pathway in rainbow trout. PMID:22701681
PsRobot: a web-based plant small RNA meta-analysis toolbox. PMID:22693224
CellBase, a comprehensive collection of RESTful web services for retrieving relevant biological information from heterogeneous sources. PMID:22693220
MicroRNAs and hepatitis C virus: toward the end of miR-122 supremacy. PMID:22691570
Transcriptome analysis of microRNAs in developing cerebral cortex of rat. PMID:22691069
Large-scale analysis of microRNA evolution. PMID:22672736
Widespread uncoupling between transcriptome and translatome variations after a stimulus in mammalian cells. PMID:22672192
Evidence for premature aging due to oxidative stress in iPSCs from Cockayne syndrome. PMID:22661500
MicroRNAs in renal development. PMID:22660936
DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways. PMID:22649059
Reducing ligation bias of small RNAs in libraries for next generation sequencing. PMID:22647250
Integrative analysis of gene and miRNA expression profiles with transcription factor-miRNA feed-forward loops identifies regulators in human cancers. PMID:22645320
The NRF2-related interactome and regulome contain multifunctional proteins and fine-tuned autoregulatory loops. PMID:22641035
Non-Canonical Processing of Arabidopsis pri-miR319a/b/c Generates Additional microRNAs to Target One RAP2.12 mRNA Isoform. PMID:22639648
MiR-34a inhibits proliferation and migration of breast cancer through down-regulation of Bcl-2 and SIRT1. PMID:22623155
Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer. PMID:22610119
Relax with CouchDB--into the non-relational DBMS era of bioinformatics. PMID:22609849
Role of MicroRNAs in lung disease. PMID:22607962
Plasma profile of microRNA after supplementation with high doses of vitamin D3 for 12 months. PMID:22594500
Extent, causes, and consequences of small RNA expression variation in human adipose tissue. PMID:22589741
Grass microRNA gene paleohistory unveils new insights into gene dosage balance in subgenome partitioning after whole-genome duplication. PMID:22589464
miRFANs: an integrated database for Arabidopsis thaliana microRNA function annotations. PMID:22583976
Reference genome sequence of the model plant Setaria. PMID:22580951
GeneCodis3: a non-redundant and modular enrichment analysis tool for functional genomics. PMID:22573175
GPSy: a cross-species gene prioritization system for conserved biological processes--application in male gamete development. PMID:22570409
On the complexity of miRNA-mediated regulation in plants: novel insights into the genomic organization of plant miRNAs. PMID:22569316
Potential pitfalls in microRNA profiling. PMID:22566380
miR-TRAP: a benchtop chemical biology strategy to identify microRNA targets. PMID:22566243
Whole transcriptome sequencing of the aging rat brain reveals dynamic RNA changes in the dark matter of the genome. PMID:22555619
Overexpression of Arabidopsis miR157b induces bushy architecture and delayed phase transition in Torenia fournieri. PMID:22552637
Integration of MicroRNA databases to study MicroRNAs associated with multiple sclerosis. PMID:22549745
In vivo structure-function analysis of human Dicer reveals directional processing of precursor miRNAs. PMID:22546613
SNPnexus: a web server for functional annotation of novel and publicly known genetic variants (2012 update). PMID:22544707
MicroRNA genes and their target 3'-untranslated regions are infrequently somatically mutated in ovarian cancers. PMID:22536442
Circulating microRNAs as noninvasive biomarkers in breast cancer. PMID:22527502
Genome-wide identification of microRNAs in larch and stage-specific modulation of 11 conserved microRNAs and their targets during somatic embryogenesis. PMID:22526500
Characterization and evolution of microRNA genes derived from repetitive elements and duplication events in plants. PMID:22523544
MicroRNA profiling: approaches and considerations. PMID:22510765
A novel source for miR-21 expression through the alternative polyadenylation of VMP1 gene transcripts. PMID:22505577
miRNAs and estrogen action. PMID:22503553
Systematic identification of edited microRNAs in the human brain. PMID:22499667
System approaches reveal the molecular networks involved in neural stem cell differentiation. PMID:22492180
MicroRNA-141 represses HBV replication by targeting PPARA. PMID:22479552
EBV and human microRNAs co-target oncogenic and apoptotic viral and human genes during latency. PMID:22473208
Discovery of novel microRNAs in rat kidney using next generation sequencing and microarray validation. PMID:22470567
Integrative analysis in oral squamous cell carcinoma reveals DNA copy number-associated miRNAs dysregulating target genes. PMID:22470160
MicroRNAs: Processing, Maturation, Target Recognition and Regulatory Functions. PMID:22468167
PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing. PMID:22467211
Small non-coding RNAs mount a silent revolution in gene expression. PMID:22464106
Comparative analysis of human and mouse expression data illuminates tissue-specific evolutionary patterns of miRNAs. PMID:22457063
Annotation of primate miRNAs by high throughput sequencing of small RNA libraries. PMID:22453055
Canonical A-to-I and C-to-U RNA editing is enriched at 3'UTRs and microRNA target sites in multiple mouse tissues. PMID:22448268
Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets. PMID:22442676
Integrated sequence-structure motifs suffice to identify microRNA precursors. PMID:22438883
Deep annotation of mouse iso-miR and iso-moR variation. PMID:22434881
A new database (GCD) on genome composition for eukaryote and prokaryote genome sequences and their initial analyses. PMID:22417913
Crosstalk between transcription factors and microRNAs in human protein interaction network. PMID:22413876
High-throughput luciferase reporter assay for small-molecule inhibitors of microRNA function. PMID:22412086
MicroRNAs and their targets: recognition, regulation and an emerging reciprocal relationship. PMID:22411466
Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome. PMID:22409512
A microRNA superfamily regulates nucleotide binding site-leucine-rich repeats and other mRNAs. PMID:22408077
Genome-wide analysis of microRNAs in rubber tree (Hevea brasiliensis L.) using high-throughput sequencing. PMID:22407387
Bioinformatic Resources of microRNA Sequences, Gene Targets, and Genetic Variation. PMID:22403585
Clinical outcome prediction by microRNAs in human cancer: a systematic review. PMID:22395642
Identification and characterization of microRNAs in Phaseolus vulgaris by high-throughput sequencing. PMID:22394504
Primitive duplicate Hox clusters in the European eel's genome. PMID:22384188
Discovering dysfunction of multiple microRNAs cooperation in disease by a conserved microRNA co-expression network. PMID:22384175
Dynamic microRNA gene transcription and processing during T cell development. PMID:22379031
miR-301a is a candidate oncogene that targets the homeobox gene Gax in human hepatocellular carcinoma. PMID:22373864
Functional complementation between transcriptional methylation regulation and post-transcriptional microRNA regulation in the human genome. PMID:22369656
Identification of mouse serum miRNA endogenous references by global gene expression profiles. PMID:22348064
Degradation of cellular mir-27 by a novel, highly abundant viral transcript is important for efficient virus replication in vivo. PMID:22346748
Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA. PMID:22344696
Evolution and function of the extended miR-2 microRNA family. PMID:22336713
Non-coding RNAs in retinal development. PMID:22312272
Adenosine deaminases that act on RNA induce reproducible changes in abundance and sequence of embryonic miRNAs. PMID:22310477
Catalog of microRNA seed polymorphisms in vertebrates. PMID:22303453
The long and short of microRNAs in the kidney. PMID:22302196
microRNAs in cardiovascular development. PMID:22300733
Deep sequencing reveals predominant expression of miR-21 amongst the small non-coding RNAs in retinal microvascular endothelial cells. PMID:22298343
MicroRNAs and their roles in aging. PMID:22294612
Translational study of microRNAs and its application in kidney disease and hypertension research. PMID:22283365
Looking at Kaposi's Sarcoma-Associated Herpesvirus-Host Interactions from a microRNA Viewpoint. PMID:22275910
Emerging role of microRNAs in drug-resistant breast cancer. PMID:22268296
IntegromeDB: an integrated system and biological search engine. PMID:22260095
Microparticles: major transport vehicles for distinct microRNAs in circulation. PMID:22258631
Liver-specific microRNA-122: Biogenesis and function. PMID:22258222
Quantification and accurate normalisation of small RNAs through new custom RT-qPCR arrays demonstrates Salmonella-induced microRNAs in human monocytes. PMID:22248082
Circulating micro-RNAs as potential blood-based markers for early stage breast cancer detection. PMID:22242178
Comprehensive transcriptome analysis reveals novel genes involved in cardiac glycoside biosynthesis and mlncRNAs associated with secondary metabolism and stress response in Digitalis purpurea. PMID:22233149
Inhibition of microRNA function by antimiR oligonucleotides. PMID:22230293
Identification of novel microRNAs in Xenopus laevis metaphase II arrested eggs. PMID:22223599
The miR-29 family: genomics, cell biology, and relevance to renal and cardiovascular injury. PMID:22214600
MicroRNAs and their isomiRs function cooperatively to target common biological pathways. PMID:22208850
Employing machine learning for reliable miRNA target identification in plants. PMID:22206472
Profiling conserved microRNA expression in recombinant CHO cell lines using Illumina sequencing. PMID:22189905
Detection of microRNAs in color space. PMID:22171334
NONCODE v3.0: integrative annotation of long noncoding RNAs. PMID:22135294
miRNEST database: an integrative approach in microRNA search and annotation. PMID:22135287
Microarray-based transcriptomic analysis of differences between long-term gregarious and solitarious desert locusts. PMID:22132225
A single-base substitution in the seed region of miR-184 causes EDICT syndrome. PMID:22131394
Aberrant epigenetic grooming of miRNAs in pancreatic cancer: a systems biology perspective. PMID:22126293
NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy. PMID:22121212
The genome of Tetranychus urticae reveals herbivorous pest adaptations. PMID:22113690
Epigenetics and genetics. MicroRNAs en route to the clinic: progress in validating and targeting microRNAs for cancer therapy. PMID:22113163
Replication competent HIV-1 viruses that express intragenomic microRNA reveal discrete RNA-interference mechanisms that affect viral replication. PMID:22112720
In vitro quantification of specific microRNA using molecular beacons. PMID:22110035
Advantages of genomic complexity: bioinformatics opportunities in microRNA cancer signatures. PMID:22101905
Mutagen-specific mutation signature determines global microRNA binding. PMID:22096567
MicroRNA transgene overexpression complements deficiency-based modifier screens in Drosophila. PMID:22095085
Evolution of microRNA diversity and regulation in animals. PMID:22094948
PolymiRTS Database 2.0: linking polymorphisms in microRNA target sites with human diseases and complex traits. PMID:22080514
miRNA profiling for biomarker discovery in multiple sclerosis: from microarray to deep sequencing. PMID:22078708
MicroRNAs in opioid pharmacology. PMID:22068836
miR393: integrator of environmental cues in auxin signaling? PMID:22067993
Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments. PMID:22064864
pre-miRNA profiles obtained through application of locked nucleic acids and deep sequencing reveals complex 5'/3' arm variation including concomitant cleavage and polyuridylation patterns. PMID:22058130
deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns. PMID:22053076
Deciphering causal and statistical relations of molecular aberrations and gene expressions in NCI-60 cell lines. PMID:22051105
Integrating contextual miRNA and protein signatures for diagnostic and treatment decisions in cancer. PMID:22022944
Comprehensive analysis of microRNA genomic loci identifies pervasive repetitive-element origins. PMID:22016841
mirEX: a platform for comparative exploration of plant pri-miRNA expression data. PMID:22013167
Micromanaging vascular smooth muscle cell differentiation and phenotypic modulation. PMID:22011749
Selective microRNA suppression in human thoracic aneurysms: relationship of miR-29a to aortic size and proteolytic induction. PMID:22010139
Transcriptional regulation of co-expressed microRNA target genes. PMID:22002038
A genome-wide survey for SNPs altering microRNA seed sites identifies functional candidates in GWAS. PMID:21995669
Systems-biology approaches to discover anti-viral effectors of the human innate immune response. PMID:21994773
Label-free high-throughput microRNA expression profiling from total RNA. PMID:21976734
A comprehensive expression profile of microRNAs in porcine pituitary. PMID:21969866
G-DOC: a systems medicine platform for personalized oncology. PMID:21969811
Beyond genome-wide association studies: new strategies for identifying genetic determinants of hypertension. PMID:21953487
RNAcentral: A vision for an international database of RNA sequences. PMID:21940779
A primate herpesvirus uses the integrator complex to generate viral microRNAs. PMID:21925386
The short non-coding transcriptome of the protozoan parasite Trypanosoma cruzi. PMID:21912713
Impact of host genes and strand selection on miRNA and miRNA* expression. PMID:21909367
Distant cis-regulatory elements in human skeletal muscle differentiation. PMID:21907276
miR-143 overexpression impairs growth of human colon carcinoma xenografts in mice with induction of apoptosis and inhibition of proliferation. PMID:21901135
Deep sequencing of short RNAs reveals novel microRNAs in minor salivary glands of patients with Sjögren's syndrome. PMID:21895886
Current approaches to micro-RNA analysis and target gene prediction. PMID:21892624
Nanopore-based detection of circulating microRNAs in lung cancer patients. PMID:21892163
Identification and remediation of biases in the activity of RNA ligases in small-RNA deep sequencing. PMID:21890899
MicroRNA sequence variation potentially contributes to within-species functional divergence in the nematode Caenorhabditis briggsae. PMID:21890738
Role of MicroRNAs in Insect Host-Microorganism Interactions. PMID:21886625
Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development. PMID:21854559
MicroRNA in TLR signaling and endotoxin tolerance. PMID:21822296
Biogenic mechanisms and utilization of small RNAs derived from human protein-coding genes. PMID:21822281
Age-associated changes in expression of small, noncoding RNAs, including microRNAs, in C. elegans. PMID:21810936
Identification of novel candidate genes involved in mineralization of dental enamel by genome-wide transcript profiling. PMID:21809343
Deep sequencing of small RNAs from human skin reveals major alterations in the psoriasis miRNAome. PMID:21807764
The mutational landscape of head and neck squamous cell carcinoma. PMID:21798893
[Pathobiology of the microRNA system]. PMID:21792603
Overexpression of the lung cancer-prognostic miR-146b microRNAs has a minimal and negative effect on the malignant phenotype of A549 lung cancer cells. PMID:21789255
A conserved long noncoding RNA affects sleep behavior in Drosophila. PMID:21775470
MicroRNA expression profiling reveals miRNA families regulating specific biological pathways in mouse frontal cortex and hippocampus. PMID:21731767
MicroRNA regulation of innate immune responses in epithelial cells. PMID:21725335
Identification and characterization of microRNAs from Phaeodactylum tricornutum by high-throughput sequencing and bioinformatics analysis. PMID:21718527
Mirtrons: microRNA biogenesis via splicing. PMID:21712066
MicroRNA-9: functional evolution of a conserved small regulatory RNA. PMID:21697652
MicroRNA expression profiling in archival tissue specimens: methods and data processing. PMID:21691932
Unusually effective microRNA targeting within repeat-rich coding regions of mammalian mRNAs. PMID:21685129
miRFam: an effective automatic miRNA classification method based on n-grams and a multiclass SVM. PMID:21619662
MicroRNAs in rheumatoid arthritis. PMID:21600203
Vive la différence: biogenesis and evolution of microRNAs in plants and animals. PMID:21554756
The MyomiR network in skeletal muscle plasticity. PMID:21467943
Molecular imaging of microRNAs. PMID:21448701
MicroRNA genes derived from repetitive elements and expanded by segmental duplication events in mammalian genomes. PMID:21436881
Co-expression of host and viral microRNAs in porcine dendritic cells infected by the pseudorabies virus. PMID:21408164
Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering. PMID:21392545
Naming 'junk': human non-protein coding RNA (ncRNA) gene nomenclature. PMID:21296742
Species-specific microRNA roles elucidated following astrocyte activation. PMID:21247879
The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection. PMID:21177655
Serum microRNAs as non-invasive biomarkers for cancer. PMID:21110877
The discovery approaches and detection methods of microRNAs. PMID:21107708
miRBase: from microRNA sequences to function PubMed citations: 1055.

1055 articles citing: miRBase: from microRNA sequences to function

MALAT1-miRNAs network regulate thymidylate synthase and affect 5FU-based chemotherapy. PMID:35922756
miRNA expression patterns in blood leukocytes and milk somatic cells of goats infected with small ruminant lentivirus (SRLV). PMID:35918371
BNEMDI: A Novel MicroRNA-Drug Interaction Prediction Model Based on Multi-Source Information With a Large-Scale Biological Network. PMID:35910223
Hsa-let-7c-5p, hsa-miR-130b-3p, and hsa-miR-142-3p as Novel miRNA Biomarkers for Melanoma Progression. PMID:35903462
miR-218: A Stress-Responsive Epigenetic Modifier. PMID:35893238
DisiMiR: Predicting Pathogenic miRNAs Using Network Influence and miRNA Conservation. PMID:35893228
MicroRNA and MicroRNA-Target Variants Associated with Autism Spectrum Disorder and Related Disorders. PMID:35893067
Quantitation of MicroRNA-155 in Human Cells by Heterogeneous Enzyme-Linked Oligonucleotide Assay Coupled with Mismatched Catalytic Hairpin Assembly Reaction. PMID:35892467
Joint Tissue Protective and Immune-Modulating miRNA Landscape of Mesenchymal Stromal Cell-Derived Extracellular Vesicles under Different Osteoarthritis-Mimicking Conditions. PMID:35890296
S-Adenosylmethionine Inhibits Colorectal Cancer Cell Migration through Mirna-Mediated Targeting of Notch Signaling Pathway. PMID:35887021
Identification of Antitumor miR-30e-5p Controlled Genes; Diagnostic and Prognostic Biomarkers for Head and Neck Squamous Cell Carcinoma. PMID:35886008
Structural Analysis of microRNAs in Myeloid Cancer Reveals Consensus Motifs. PMID:35885935
Integrated sRNA-seq and RNA-seq Analyses Reveal a microRNA Regulation Network Involved in Cold Response in Pisum sativum L. PMID:35885902
miR167d-ARFs Module Regulates Flower Opening and Stigma Size in Rice. PMID:35876915
Construction of circRNA-Mediated Immune-Related ceRNA Network and Identification of Circulating circRNAs as Diagnostic Biomarkers in Acute Ischemic Stroke. PMID:35873383
Multi-Omics Integration-Based Prioritisation of Competing Endogenous RNA Regulation Networks in Small Cell Lung Cancer: Molecular Characteristics and Drug Candidates. PMID:35860558
The Epigenetic Role of MiRNAs in Endocrine Crosstalk Between the Cardiovascular System and Adipose Tissue: A Bidirectional View. PMID:35859891
Urinary microRNAome in healthy cats and cats with pyelonephritis or other urological conditions. PMID:35857780
Global profiling and annotation of templated isomiRs dynamics across Caenorhabditis elegans development. PMID:35848953
Comparative Profiling of Circulating Exosomal Small RNAs Derived From Peruvian Patients With Tuberculosis and Pulmonary Adenocarcinoma. PMID:35846752
Diagnostic and prognostic potential clustered miRNAs in bladder cancer. PMID:35845108
Time and phenotype-dependent transcriptome analysis in AAV-TGFβ1 and Bleomycin-induced lung fibrosis models. PMID:35842487
Yiqi Jianpi Huayu Jiedu Decoction Inhibits Metastasis of Colon Adenocarcinoma by Reversing Hsa-miR-374a-3p/Wnt3/β-Catenin-Mediated Epithelial-Mesenchymal Transition and Cellular Plasticity. PMID:35837105
Comparative transcriptomics identifies candidate genes involved in the evolutionary transition from dehiscent to indehiscent fruits in Lepidium (Brassicaceae). PMID:35836106
New Roles for MicroRNAs in Old Worms. PMID:35821862
Posterior cingulate cortex reveals an expression profile of resilience in cognitively intact elders. PMID:35813880
A Nomogram model for predicting the occurrence of no-reflow phenomenon after percutaneous coronary intervention using the lncRNA TUG1/miR-30e/NPPB biomarkers. PMID:35813727
The Chromosomal Distribution of Sex-Biased MicroRNAs in Drosophila is Nonadaptive. PMID:35809037
Comprehensive Identification of Human Cell Type Chromatin Activity-Specific and Cell Type Expression-Specific MicroRNAs. PMID:35806329
Integrative Analysis of miRNAs and Their Targets Involved in Ray Floret Growth in Gerbera hybrida. PMID:35806310
Critical Roles of Circular RNA in Tumor Metastasis via Acting as a Sponge of miRNA/isomiR. PMID:35806027
COL5A1 Promotes the Progression of Gastric Cancer by Acting as a ceRNA of miR-137-3p to Upregulate FSTL1 Expression. PMID:35805015
Regulation of mi-RNAs Target Cancer Genes Between Exercise and Non-exercise in Rat Rheumatoid Arthritis Induction: Pilot Study. PMID:35800470
Characterization and bioinformatics analysis of ptc-miR396g-5p in response to drought stress of Paeonia ostii. PMID:35799773
A comprehensive survey into the role of microRNAs in ovarian cancer chemoresistance; an updated overview. PMID:35799305
Extending and Running the Mosquito Small RNA Genomics Resource Pipeline. PMID:35796973
Integrative analysis of miRNA and mRNA profiles reveals that gga-miR-106-5p inhibits adipogenesis by targeting the KLF15 gene in chickens. PMID:35791010
Molecular Dissection of a Conserved Cluster of miRNAs Identifies Critical Structural Determinants That Mediate Differential Processing. PMID:35784477
MicroRNA detection in biologically relevant media using a split aptamer platform. PMID:35779513
Genome-Wide Identification and Analysis of the Class III Peroxidase Gene Family in Tobacco (Nicotiana tabacum). PMID:35769995
Six genetically linked mutations in the CD36 gene significantly delay the onset of Alzheimer's disease. PMID:35768560
Multifunctional Roles of MicroRNAs in Schistosomiasis. PMID:35756064
Unraveling mitochondrial piRNAs in mouse embryonic gonadal cells. PMID:35750721
Circulating MicroRNAs as a Tool for Diagnosis of Liver Disease Progression in People Living with HIV-1. PMID:35746590
Revisiting the miR-200 Family: A Clan of Five Siblings with Essential Roles in Development and Disease. PMID:35740906
Developmental Alterations of Colonic microRNA Profiles Imply Potential Biological Functions in Kid Goats. PMID:35739870
A deep learning method for miRNA/isomiR target detection. PMID:35739186
NGS-identified miRNAs in Canine Mammary Gland Tumors Show Unexpected Expression Alterations in qPCR Analysis. PMID:35738588
Urinary extracellular vesicles and micro-RNA as markers of acute kidney injury after cardiac surgery. PMID:35729178
Multi-Omics Integration and Network Analysis Reveal Potential Hub Genes and Genetic Mechanisms Regulating Bovine Mastitis. PMID:35723402
MiR-1248: a new prognostic biomarker able to identify supratentorial hemispheric pediatric low-grade gliomas patients associated with progression. PMID:35715818
Integrated Analysis of miRNA-mRNA Expression in Mink Lung Epithelial Cells Infected With Canine Distemper Virus. PMID:35711811
piRNA-like small RNAs target transposable elements in a Clade IV parasitic nematode. PMID:35710810
Multi-view heterogeneous molecular network representation learning for protein-protein interaction prediction. PMID:35710342
An Insight Into Pentatricopeptide-Mediated Chloroplast Necrosis via microRNA395a During Rhizoctonia solani Infection. PMID:35706449
The LINC00261/MiR105-5p/SELL axis is involved in dysfunction of B cell and is associated with overall survival in hepatocellular carcinoma. PMID:35702258
ChIP-Hub provides an integrative platform for exploring plant regulome. PMID:35701419
A multifunctional locus controls motor neuron differentiation through short and long noncoding RNAs. PMID:35698802
Expression and Biological Functions of miRNAs in Chronic Pain: A Review on Human Studies. PMID:35682695
MicroRNAs and other small RNAs in Aedes aegypti saliva and salivary glands following chikungunya virus infection. PMID:35681077
A CAG repeat-targeting artificial miRNA lowers the mutant huntingtin level in the YAC128 model of Huntington's disease. PMID:35664700
Endothelial extracellular vesicles promote tumour growth by tumour-associated macrophage reprogramming. PMID:35656866
Transcriptomic Analysis Provides Insights to Reveal the bmp6 Function Related to the Development of Intermuscular Bones in Zebrafish. PMID:35646941
Downregulation of hsa-miR-30b-3p Inhibits the Oncogenicity of Lung Adenocarcinoma by Targeting the METTL7B Gene. PMID:35646115
An Expanded Landscape of Unusually Short RNAs in 11 Samples from Six Eukaryotic Organisms. PMID:35645341
MicroRNAs as therapeutic targets in cardiovascular disease. PMID:35642640
The evolutionary history of small RNAs in Solanaceae. PMID:35642548
Dosage-sensitive miRNAs trigger modulation of gene expression during genomic imbalance in maize. PMID:35641525
Histone Modifications and Non-Coding RNAs: Mutual Epigenetic Regulation and Role in Pathogenesis. PMID:35628612
Exploring Relevant mRNAs and miRNAs in Injured Urethral Tissues of Rats with High-Throughput Sequencing. PMID:35627209
Genetic Variants of MIR27A, MIR196A2 May Impact the Risk for the Onset of Coronary Artery Disease in the Pakistani Population. PMID:35627132
Endometriosis Associated-miRNome Analysis of Blood Samples: A Prospective Study. PMID:35626305
Urine Cell-Free MicroRNAs in Localized Prostate Cancer Patients. PMID:35625992
miR-155-3p: processing by-product or rising star in immunity and cancer? PMID:35611569
Unveiling the nature's fruit basket to computationally identify Citrus sinensis csi-mir169-3p as a probable plant miRNA against Reference and Omicron SARS-CoV-2 genome. PMID:35605482
Small Extracellular Vesicles in Milk Cross the Blood-Brain Barrier in Murine Cerebral Cortex Endothelial Cells and Promote Dendritic Complexity in the Hippocampus and Brain Function in C57BL/6J Mice. PMID:35600828
Interspecific hybridization in tomato influences endogenous viral sRNAs and alters gene expression. PMID:35597968
Noncoding RNA actions through IGFs and IGF binding proteins in cancer. PMID:35597813
Fission Impossible: Stabilized miRNA-Based Analogs in Neurodegenerative Disease. PMID:35592255
Identification of miRNA biomarkers for stomach adenocarcinoma. PMID:35578189
BioTAGME: A Comprehensive Platform for Biological Knowledge Network Analysis. PMID:35571058
MicroRNAs as Regulators of Phagocytosis. PMID:35563685
Clinical Parameters and Epigenetic Biomarkers of Plaque Vulnerability in Patients with Carotid Stenosis. PMID:35563540
Implication of genetic variants in primary microRNA processing sites in the risk of multiple sclerosis. PMID:35561450
sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms. PMID:35556129
Targeting Genetic Modifiers of HBG Gene Expression in Sickle Cell Disease: The miRNA Option. PMID:35553407
Comprehensive microRNA-seq transcriptomic profiling across 11 organs, 4 ages, and 2 sexes of Fischer 344 rats. PMID:35551205
Mutual exclusivity of ESR1 and TP53 mutations in endocrine resistant metastatic breast cancer. PMID:35538119
Evolution of the ErbB gene family and analysis of regulators of Egfr expression during development of the rat spinal cord. PMID:35535900
MicroRNAs in kidney development and disease. PMID:35531954
Novel approach to identify putative Epstein-Barr-virus microRNAs regulating host cell genes with relevance in tumor biology and immunology. PMID:35529676
Identifying Key MicroRNA Signatures for Neurodegenerative Diseases With Machine Learning Methods. PMID:35528544
CircMiMi: a stand-alone software for constructing circular RNA-microRNA-mRNA interactions across species. PMID:35524165
EpCAM as a Novel Biomarker for Survivals in Prostate Cancer Patients. PMID:35517503
Carcinoma-associated fibroblasts release microRNA-331-3p containing extracellular vesicles to exacerbate the development of pancreatic cancer via the SCARA5-FAK axis. PMID:35510828
Distinct miRNAs associated with various clinical presentations of SARS-CoV-2 infection. PMID:35502319
Opportunities and Challenges of Predictive Approaches for the Non-coding RNA in Plants. PMID:35498708
Relationship Between Circulating MicroRNAs and Left Ventricular Hypertrophy in Hypertensive Patients. PMID:35498018
miRNAs Can Affect Intestinal Epithelial Barrier in Inflammatory Bowel Disease. PMID:35493445
Intramolecular ligation method (iLIME) for pre-miRNA quantification and sequencing. PMID:35487691
Rapid sequence and functional diversification of a miRNA superfamily targeting calcium signaling components in seed plants. PMID:35485957
A starch- and sucrose-reduced dietary intervention in irritable bowel syndrome patients produced a shift in gut microbiota composition along with changes in phylum, genus, and amplicon sequence variant abundances, without affecting the micro-RNA levels. PMID:35484927
Critical contribution of 3' non-seed base pairing to the in vivo function of the evolutionarily conserved let-7a microRNA. PMID:35476978
Set of miRNAs Involved in Sulfur Uptake and the Assimilation Pathway of Indian Mustard (B. juncea) in Response to Sulfur Treatments. PMID:35474774
HIF1α-SP1 interaction disrupts the circ-0001875/miR-31-5p/SP1 regulatory loop under a hypoxic microenvironment and promotes non-small cell lung cancer progression. PMID:35473752
MicroRNAs as the Potential Regulators of SARS-CoV-2 Infection and Modifiers of the COVID-19 Clinical Features. PMID:35464324
Non-Coding RNAs in Tuberculosis Epidemiology: Platforms and Approaches for Investigating the Genome's Dark Matter. PMID:35457250
Neuroepigenetic Mechanisms of Action of Ultrashort Peptides in Alzheimer's Disease. PMID:35457077
Targeting of Mcl-1 Expression by MiRNA-3614-5p Promotes Cell Apoptosis of Human Prostate Cancer Cells. PMID:35457012
Distinct CholinomiR Blood Cell Signature as a Potential Modulator of the Cholinergic System in Women with Fibromyalgia Syndrome. PMID:35455956
Comprehensive Analysis Identifies Ameloblastin-Related Competitive Endogenous RNA as a Prognostic Biomarker for Testicular Germ Cell Tumour. PMID:35454778
Darling: A Web Application for Detecting Disease-Related Biomedical Entity Associations with Literature Mining. PMID:35454109
Plasma miRNA Profile of Crohn's Disease and Rheumatoid Arthritis Patients. PMID:35453708
Dynamic patterns of microRNA expression during acute myeloid leukemia state-transition. PMID:35452289
Global MicroRNA Profiling of Vascular Endothelial Cells. PMID:35451756
Blood miRNAs Are Linked to Frequent Asthma Exacerbations in Childhood Asthma and Adult COPD. PMID:35447890
Patterns of Differentially Expressed circRNAs in Human Thymocytes. PMID:35447889
Small RNA Sequencing Revealed that miR4415, a Legume-Specific miRNA, was Involved in the Cold Acclimation of Ammopiptanthus nanus by Targeting an L-Ascorbate Oxidase Gene and Regulating the Redox State of Apoplast. PMID:35444684
Contribution of MicroRNAs in Chemoresistance to Cisplatin in the Top Five Deadliest Cancer: An Updated Review. PMID:35444536
TRMT6/61A-dependent base methylation of tRNA-derived fragments regulates gene-silencing activity and the unfolded protein response in bladder cancer. PMID:35444240
Recent advances and potential applications of cross-kingdom movement of miRNAs in modulating plant's disease response. PMID:35442163
Construction of a circRNA-Mediated ceRNA Network Reveals Novel Biomarkers for Aortic Dissection. PMID:35437351
Small RNA Expression Profiling Reveals hsa-miR-181d-5p Downregulation Associated With TNF-α Overexpression in Sjögren's Syndrome Patients. PMID:35432384
Polysaccharides Produced by the Mushroom Trametes robiniophila Murr Boosts the Sensitivity of Hepatoma Cells to Oxaliplatin via the miR-224-5p/ABCB1/P-gp Axis. PMID:35426328
Construction Immune Related Feed-Forward Loop Network Reveals Angiotensin II Receptor Blocker as Potential Neuroprotective Drug for Ischemic Stroke. PMID:35419038
XGEM: Predicting Essential miRNAs by the Ensembles of Various Sequence-Based Classifiers With XGBoost Algorithm. PMID:35419029
Targeting non-coding RNAs to overcome cancer therapy resistance. PMID:35418578
miRNA sequencing analysis of healthy and atretic follicles of chickens revealed that miR-30a-5p inhibits granulosa cell death via targeting Beclin1. PMID:35410457
The Multiverse of Plant Small RNAs: How Can We Explore It? PMID:35409340
Biogenesis, Functions, Interactions, and Resources of Non-Coding RNAs in Plants. PMID:35409060
TIA1 Loss Exacerbates Fatty Liver Disease but Exerts a Dual Role in Hepatocarcinogenesis. PMID:35406476
MILNP: Plant lncRNA-miRNA Interaction Prediction Based on Improved Linear Neighborhood Similarity and Label Propagation. PMID:35401586
Identification of potentially functional circRNAs and prediction of circRNA-miRNA-mRNA regulatory network in periodontitis: Bridging the gap between bioinformatics and clinical needs. PMID:35388494
PSRR: A Web Server for Predicting the Regulation of miRNAs Expression by Small Molecules. PMID:35386297
Recent trends in miRNA therapeutics and the application of plant miRNA for prevention and treatment of human diseases. PMID:35382490
Genome-wide variants and polygenic risk scores for cognitive impairment following blood or marrow transplantation. PMID:35379913
miR160 Interacts in vivo With Pinus pinaster AUXIN RESPONSE FACTOR 18 Target Site and Negatively Regulates Its Expression During Conifer Somatic Embryo Development. PMID:35371172
MiR-223 as a Regulator and Therapeutic Target in Liver Diseases. PMID:35371024
A blood-based miRNA signature with prognostic value for overall survival in advanced stage non-small cell lung cancer treated with immunotherapy. PMID:35361874
Identification of circRNA Biomarker for Gastric Cancer through Integrated Analysis. PMID:35359600
IL-6 Promoter Hypomethylation Acts As a Diagnostic Biomarker in Hepatitis B Virus-Associated Hepatocellular Carcinoma. PMID:35359408
A Quartet Network Analysis Identifying Mechanically Responsive Long Noncoding RNAs in Bone Remodeling. PMID:35356768
TRUEE; a bioinformatic pipeline to define the functional microRNA targetome of Arabidopsis. PMID:35352405
Evidence of antagonistic predictive effects of miRNAs in breast cancer cohorts through data-driven networks. PMID:35338170
Functions and underlying mechanisms of miR-650 in human cancers. PMID:35331235
Roles of the Core Components of the Mammalian miRISC in Chromatin Biology. PMID:35327968
Impact of miR-1/miR-133 Clustered miRNAs: PFN2 Facilitates Malignant Phenotypes in Head and Neck Squamous Cell Carcinoma. PMID:35327465
Functional Enrichment Analysis of Regulatory Elements. PMID:35327392
Clinical Applications of Short Non-Coding RNA-Based Therapies in the Era of Precision Medicine. PMID:35326738
An Integrated Bioinformatics and Functional Approach for miRNA Validation. PMID:35325428
Regulatory functions of miR‑200b‑3p in tumor development (Review). PMID:35322861
microRNA expression levels in the nucleus accumbens correlate with morphine-taking but not morphine-seeking behaviour in male rats. PMID:35320877
Correlation between microRNA-320 and postoperative delirium in patients undergoing tibial fracture internal fixation surgery. PMID:35317728
Atrophic gastritis and gastric cancer tissue miRNome analysis reveals hsa-miR-129-1 and hsa-miR-196a as potential early diagnostic biomarkers. PMID:35317427
A Novel Tissue Atlas and Online Tool for the Interrogation of Small RNA Expression in Human Tissues and Biofluids. PMID:35317387
The Involvement of Long Non-coding RNA and Messenger RNA Based Molecular Networks and Pathways in the Subacute Phase of Traumatic Brain Injury in Adult Mice. PMID:35311004
MicroRNAs as Biomarkers for Ionizing Radiation Injury. PMID:35309926
Tear miRNAs Identified in a Murine Model of Sjögren's Syndrome as Potential Diagnostic Biomarkers and Indicators of Disease Mechanism. PMID:35309364
MicroRNA childhood cancer catalog (M3Cs): a resource for translational bioinformatics toward health informatics in pediatric cancer. PMID:35303059
microRNA profile of Hermetia illucens (black soldier fly) and its implications on mass rearing. PMID:35298540
Development of a miRNA-based classifier for detection of colorectal cancer molecular subtypes. PMID:35298091
Integrative approaches for studying the role of noncoding RNAs in influencing drug efficacy and toxicity. PMID:35296201
Beyond AOPs: A Mechanistic Evaluation of NAMs in DART Testing. PMID:35295212
Skeletal muscle MiR-210 expression is associated with mitochondrial function in peripheral artery disease patients. PMID:35288364
Swelling-induced upregulation of miR-141-3p inhibits hepatocyte proliferation. PMID:35287291
The Small RNA Universe of Capitella teleta. PMID:35281272
The Potential Roles of Exosomal Non-Coding RNAs in Hepatocellular Carcinoma. PMID:35280805
Biogenesis, conservation, and function of miRNA in liverworts. PMID:35275209
Evolutionarily conservative and non-conservative regulatory networks during primate interneuron development revealed by single-cell RNA and ATAC sequencing. PMID:35273378
Difference in miRNA Expression in Functioning and Silent Corticotroph Pituitary Adenomas Indicates the Role of miRNA in the Regulation of Corticosteroid Receptors. PMID:35270010
MicroRNA Signatures in the Upper Urinary Tract Urothelial Carcinoma Scenario: Ready for the Game Changer? PMID:35269744
Oxidative Stress and Cancer Heterogeneity Orchestrate NRF2 Roles Relevant for Therapy Response. PMID:35268568
Genome-wide identification and characterization of Fusarium circinatum-responsive lncRNAs in Pinus radiata. PMID:35264109
Expression of whole blood miR-126-3p, -30a-5p, -1299, -182-5p and -30e-3p in chronic kidney disease in a South African community-based sample. PMID:35260775
Determining extracellular vesicles properties and miRNA cargo variability in bovine milk from healthy cows and cows undergoing subclinical mastitis. PMID:35255807
Changes in transcriptomic landscape in human end-stage heart failure with distinct etiology. PMID:35252820
Signatures of genetic variation in human microRNAs point to processes of positive selection and population-specific disease risks. PMID:35249174
Multilayer control of cardiac electrophysiology by microRNAs. PMID:35247375
A putative short-chain dehydrogenase Rv0148 of Mycobacterium tuberculosis affects bacterial survival and virulence. PMID:35243448
Multiple cancer type classification by small RNA expression profiles with plasma samples from multiple facilities. PMID:35218669
DeepWalk based method to predict lncRNA-miRNA associations via lncRNA-miRNA-disease-protein-drug graph. PMID:35216549
Roles and Regulation of BCL-xL in Hematological Malignancies. PMID:35216310
Circulating miR-126-3p and miR-423-5p Expression in de novo Adult Acute Myeloid Leukemia: Correlations with Response to Induction Therapy and the 2-Year Overall Survival. PMID:35210895
Homo Sapiens (Hsa)-microRNA (miR)-6727-5p Contributes to the Impact of High-Density Lipoproteins on Fibroblast Wound Healing In Vitro. PMID:35207076
Tissue miRNA Combinations for the Differential Diagnosis of Adrenocortical Carcinoma and Adenoma Established by Artificial Intelligence. PMID:35205648
Therapeutic Metabolic Reprograming Using microRNAs: From Cancer to HIV Infection. PMID:35205318
miRNome Profiling Detects miR-101-3p and miR-142-5p as Putative Blood Biomarkers of Frailty Syndrome. PMID:35205276
Network Approaches to Study Endogenous RNA Competition and Its Impact on Tissue-Specific microRNA Functions. PMID:35204832
New Tricks with Old Dogs: Computational Identification and Experimental Validation of New miRNA-mRNA Regulation in hiPSC-CMs. PMID:35203600
MiR-24-3p Conservatively Regulates Muscle Cell Proliferation and Apoptosis by Targeting Common Gene CAMK2B in Rat and Cattle. PMID:35203213
Flexible pri-miRNA structures enable tunable production of 5' isomiRs. PMID:35188062
Regulatory networks and 5' partner usage of miRNA host gene fusions in breast cancer. PMID:35182081
Selection of reference genes for quantitative analysis of microRNA expression in three different types of cancer. PMID:35176014
Versatile role of miR-24/24-1*/24-2* expression in cancer and other human diseases. PMID:35173828
Photocontrol of Axillary Bud Outgrowth by MicroRNAs: Current State-of-the-Art and Novel Perspectives Gained From the Rosebush Model. PMID:35173747
Exosomal microRNAs as Potential Biomarkers and Therapeutic Agents for Acute Ischemic Stroke: New Expectations. PMID:35173663
Significant modulations of linc001128 and linc0938 with miR-24-3p and miR-30c-5p in Parkinson disease. PMID:35173238
ASRmiRNA: Abiotic Stress-Responsive miRNA Prediction in Plants by Using Machine Learning Algorithms with Pseudo K-Tuple Nucleotide Compositional Features. PMID:35163534
Multistability in Macrophage Activation Pathways and Metabolic Implications. PMID:35159214
Transcriptome and miRNAome analysis reveals components regulating tissue differentiation of bamboo shoots. PMID:35157078
MIMRDA: A Method Incorporating the miRNA and mRNA Expression Profiles for Predicting miRNA-Disease Associations to Identify Key miRNAs (microRNAs). PMID:35154284
The Role of microRNA-133 in Hemocyte Proliferation and Innate Immunity of Scylla paramamosain. PMID:35154084
Transcriptomic analysis reveals myometrial topologically associated domains linked to the onset of human term labour. PMID:35150271
Multimodal reasoning based on knowledge graph embedding for specific diseases. PMID:35150235
Serum RNAs can predict lung cancer up to 10 years prior to diagnosis. PMID:35147498
miR-9a regulates levels of both rhomboid mRNA and protein in the early Drosophila melanogaster embryo. PMID:35143618
Predicting Drosha and Dicer Cleavage Sites with DeepMirCut. PMID:35141278
Inherent conformational plasticity in dsRBDs enables interaction with topologically distinct RNAs. PMID:35134335
Development and characterization of nitrogen and phosphorus use efficiency responsive genic and miRNA derived SSR markers in wheat. PMID:35132208
Plasma miRNA profile at COVID-19 onset predicts severity status and mortality. PMID:35130828
Saliva RNA Biomarkers of Gastrointestinal Dysfunction in Children With Autism and Neurodevelopmental Disorders: Potential Implications for Precision Medicine. PMID:35126215
Circulating miR-320b and miR-483-5p levels are associated with COVID-19 in-hospital mortality. PMID:35122770
Weak Effect of Gypsy Retrotransposon Bursts on Sonneratia alba Salt Stress Gene Expression. PMID:35111190
CircSCAPER contributes to IL-1β-induced osteoarthritis in vitro via miR-140-3p/EZH2 axis. PMID:35103493
gga-miRNOME, a microRNA-sequencing dataset from chick embryonic tissues. PMID:35102184
Current Understanding of Exosomal MicroRNAs in Glioma Immune Regulation and Therapeutic Responses. PMID:35095909
Exercise-Induced Extracellular Vesicles Delay the Progression of Prostate Cancer. PMID:35087866
Early downregulation of hsa-miR-144-3p in serum from drug-naïve Parkinson's disease patients. PMID:35079043
Increased serum miR-193a-5p during non-alcoholic fatty liver disease progression: Diagnostic and mechanistic relevance. PMID:35072021
miR-18a-3p and Its Target Protein HuR May Regulate Myogenic Differentiation in Immune-Mediated Necrotizing Myopathy. PMID:35069550
Preliminary evidence that lectins in infant soy formula apparently bind bovine milk exosomes and prevent their absorption in healthy adults. PMID:35063038
Influence of feeder cells on transcriptomic analysis of pluripotent stem cells. PMID:35060660
Effects of Adipose-Derived Biogenic Nanoparticle-Associated microRNA-451a on Toll-like Receptor 4-Induced Cytokines. PMID:35056912
Expression Profile of miRs in Mesial Temporal Lobe Epilepsy: Systematic Review. PMID:35055144
In silico identification of sugarcane (Saccharum officinarum L.) genome encoded microRNAs targeting sugarcane bacilliform virus. PMID:35051194
Prediction and analysis of functional RNA structures within the integrative genomics viewer. PMID:35047817
Integrated miRNA and mRNA Expression Profiles Reveal Differentially Expressed miR-222a as an Antiviral Factor Against Duck Hepatitis A Virus Type 1 Infection. PMID:35047423
Open Problems in Extracellular RNA Data Analysis: Insights From an ERCC Online Workshop. PMID:35047007
Anti-miR-135/SPOCK1 axis antagonizes the influence of metabolism on drug response in intestinal/colon tumour organoids. PMID:35046388
Plant Reactome and PubChem: The Plant Pathway and (Bio)Chemical Entity Knowledgebases. PMID:35037224
MGcount: a total RNA-seq quantification tool to address multi-mapping and multi-overlapping alignments ambiguity in non-coding transcripts. PMID:35030988
Preclinical development and phase 1 trial of a novel siRNA targeting lipoprotein(a). PMID:35027752
Integrated analysis of long non-coding RNAs and mRNAs reveals the regulatory network of maize seedling root responding to salt stress. PMID:35026983
The Vulnerability of the Developing Brain: Analysis of Highly Expressed Genes in Infant C57BL/6 Mouse Hippocampus in Relation to Phenotypic Annotation Derived From Mutational Studies. PMID:35023907
FishmiRNA: An Evolutionarily Supported MicroRNA Annotation and Expression Database for Ray-Finned Fishes. PMID:35020925
Altered White Matter and microRNA Expression in a Murine Model Related to Williams Syndrome Suggests That miR-34b/c Affects Brain Development via Ptpru and Dcx Modulation. PMID:35011720
Novel Risk Associations between microRNA Polymorphisms and Gastric Cancer in a Chilean Population. PMID:35008894
The Study of Cerebrospinal Fluid microRNAs in Spinal Cord Injury and Neurodegenerative Diseases: Methodological Problems and Possible Solutions. PMID:35008540
Renal Tissue miRNA Expression Profiles in ANCA-Associated Vasculitis-A Comparative Analysis. PMID:35008531
Technological Approaches in the Analysis of Extracellular Vesicle Nucleotide Sequences. PMID:35004647
Machine Learning Identifies Cellular and Exosomal MicroRNA Signatures of Lyssavirus Infection in Human Stem Cell-Derived Neurons. PMID:35004351
Effect of aneuploidy of a non-essential chromosome on gene expression in maize. PMID:34997647
The embryonic transcriptome of Parhyale hawaiensis reveals different dynamics of microRNAs and mRNAs during the maternal-zygotic transition. PMID:34996916
MicroRNAs in obesity, sarcopenia, and commonalities for sarcopenic obesity: a systematic review. PMID:34984856
Circulating miRNA as potential biomarkers for diabetes mellitus type 2: should we focus on searching for sex differences? PMID:34984663
miRMut: Annotation of mutations in miRNA genes from human whole-exome or whole-genome sequencing. PMID:34977675
HT-SELEX-based identification of binding pre-miRNA hairpin-motif for small molecules. PMID:34976435
Porcine Reproductive and Respiratory Syndrome Virus Evades Antiviral Innate Immunity via MicroRNAs Regulation. PMID:34975824
Multiplex-Heterogeneous Network-Based Capturing Potential SNP "Switches" of Pathways Associating With Diverse Disease Characteristics of Asthma. PMID:34970542
Reexamining assumptions about miRNA-guided gene silencing. PMID:34967419
Predicting Pseudogene-miRNA Associations Based on Feature Fusion and Graph Auto-Encoder. PMID:34966413
A Chromosome-Level Genome Assembly of Mozambique Tilapia (Oreochromis mossambicus) Reveals the Structure of Sex Determining Regions. PMID:34956335
Circulating miRNAs as Potential Biomarkers for Celiac Disease Development. PMID:34950132
Resetting of the 24-nt siRNA landscape in rice zygotes. PMID:34949668
LE-MDCAP: A Computational Model to Prioritize Causal miRNA-Disease Associations. PMID:34948403
Identification of miR-199-5p and miR-199-3p Target Genes: Paxillin Facilities Cancer Cell Aggressiveness in Head and Neck Squamous Cell Carcinoma. PMID:34946859
Chromosome Genome Assembly of Cromileptes altivelis Reveals Loss of Genome Fragment in Cromileptes Compared with Epinephelus Species. PMID:34946822
Association of Circulating miR-145-5p and miR-let7c and Atherosclerotic Plaques in Hypertensive Patients. PMID:34944484
Screening Analysis of Platelet miRNA Profile Revealed miR-142-3p as a Potential Biomarker in Modeling the Risk of Acute Coronary Syndrome. PMID:34944034
Identifying Putative Causal Links between MicroRNAs and Severe COVID-19 Using Mendelian Randomization. PMID:34944012
MicroRNA Cues from Nature: A Roadmap to Decipher and Combat Challenges in Human Health and Disease? PMID:34943882
MicroRNA-214 in Health and Disease. PMID:34943783
Deep Learning for the discovery of new pre-miRNAs: Helping the fight against COVID-19. PMID:34939043
Research progress on plant noncoding RNAs in response to low-temperature stress. PMID:34927551
Are Argonaute-Associated Tiny RNAs Junk, Inferior miRNAs, or a New Type of Functional RNAs? PMID:34926585
An atypical class of non-coding small RNAs is produced in rice leaves upon bacterial infection. PMID:34921170
Genetic architecture of microRNA expression and its link to complex diseases in the Japanese population. PMID:34919704
Regulation of retinal amacrine cell generation by miR-216b and Foxn3. PMID:34919141
Sequencing of Argonaute-bound microRNA/mRNA hybrids reveals regulation of the unfolded protein response by microRNA-320a. PMID:34914716
MIKB: A manually curated and comprehensive knowledge base for myocardial infarction. PMID:34900127
Combined Stress Conditions in Melon Induce Non-additive Effects in the Core miRNA Regulatory Network. PMID:34899791
In Silico Investigation of Conserved miRNAs and Their Targets From the Expressed Sequence Tags in Neospora Caninum Genome. PMID:34898982
Whole-Genome Resequencing of Worldwide Wild and Domestic Sheep Elucidates Genetic Diversity, Introgression, and Agronomically Important Loci. PMID:34893856
Identification and Functional Analysis of lncRNAs Responsive to Hypoxia in Eospalax fontanierii. PMID:34889903
MiRNA Deregulation Distinguishes Anaplastic Thyroid Carcinoma (ATC) and Supports Upregulation of Oncogene Expression. PMID:34885022
The miR-200 Family of microRNAs: Fine Tuners of Epithelial-Mesenchymal Transition and Circulating Cancer Biomarkers. PMID:34884985
Natural Products Targeting Cancer Stem Cells for Augmenting Cancer Therapeutics. PMID:34884848
Transcriptomic Characterization of Cow, Donkey and Goat Milk Extracellular Vesicles Reveals Their Anti-Inflammatory and Immunomodulatory Potential. PMID:34884564
MYC dosage compensation is mediated by miRNA-transcription factor interactions in aneuploid cancer. PMID:34877484
Constrained peptides mimic a viral suppressor of RNA silencing. PMID:34871435
Identification of HIV-1-specific cascaded microRNA-mRNA regulatory relationships by parallel mRNA and microRNA expression profiling with AIDS patients after antiviral treatment. PMID:34871208
Circulating MicroRNAs as Non-invasive Biomarkers for Canine Cushing's Syndrome. PMID:34869733
Physiologically relevant miRNAs in mammalian oocytes are rare and highly abundant. PMID:34866300
Coordinated regulation of WNT/β-catenin, c-Met, and integrin signalling pathways by miR-193b controls triple negative breast cancer metastatic traits. PMID:34863149
miRTarBase update 2022: an informative resource for experimentally validated miRNA-target interactions. PMID:34850920
Shoot and root single cell sequencing reveals tissue- and daytime-specific transcriptome profiles. PMID:34850215
CircNet 2.0: an updated database for exploring circular RNA regulatory networks in cancers. PMID:34850139
OUHP: an optimized universal hairpin primer system for cost-effective and high-throughput RT-qPCR-based quantification of microRNA (miRNA) expression. PMID:34850128
LncACTdb 3.0: an updated database of experimentally supported ceRNA interactions and personalized networks contributing to precision medicine. PMID:34850125
Emerging therapeutic targets for cerebral edema. PMID:34844502
Advances in Non-Coding RNA Sequencing. PMID:34842804
MYCN in Neuroblastoma: "Old Wine into New Wineskins". PMID:34842635
Human Papillomaviruses-Associated Cancers: An Update of Current Knowledge. PMID:34835040
Y/X-Chromosome-Bearing Sperm Shows Elevated Ratio in the Left but Not the Right Testes in Healthy Mice. PMID:34833095
Insights into the SARS-CoV-2-Mediated Alteration in the Stress Granule Protein Regulatory Networks in Humans. PMID:34832615
Differential Circulating MicroRNA Expression in Age-Related Macular Degeneration. PMID:34830203
Enterococcus faecium Regulates Honey Bee Developmental Genes. PMID:34829986
miRNAs and lncRNAs: Potential Non-Invasive Biomarkers for Endometriosis. PMID:34829891
Comprehensive Analysis of miRNAs and Target mRNAs between Immature and Mature Testis Tissue in Chinese Red Steppes Cattle. PMID:34827757
The conserved single-cleavage mechanism of animal DROSHA enzymes. PMID:34824450
MicroRNA-181a restricts human γδ T cell differentiation by targeting Map3k2 and Notch2. PMID:34821000
Accumulation dynamics of ARGONAUTE proteins during meiosis in Arabidopsis. PMID:34812935
Sexually dimorphic patterns in maternal circulating microRNAs in pregnancies complicated by fetal growth restriction. PMID:34789323
Circulating miRNA repertoire as a biomarker of metabolic and reproductive states in rainbow trout. PMID:34781956
A Rapid Evolving microRNA Cluster Rewires Its Target Regulatory Networks in Drosophila. PMID:34777478
MicroRNA Variants and HLA-miRNA Interactions are Novel Rheumatoid Arthritis Susceptibility Factors. PMID:34777472
Non-Coding RNAs as Regulators of Myogenesis and Postexercise Muscle Regeneration. PMID:34768999
Role of microRNAs in Obesity-Related Kidney Disease. PMID:34768854
Resilience in Long-Term Viral Infection: Genetic Determinants and Interactions. PMID:34768809
The miRNome of Depression. PMID:34768740
MicroRNAs Role in Breast Cancer: Theranostic Application in Saudi Arabia. PMID:34760689
tsRFun: a comprehensive platform for decoding human tsRNA expression, functions and prognostic value by high-throughput small RNA-Seq and CLIP-Seq data. PMID:34755848
Regulatory network of miRNA, lncRNA, transcription factor and target immune response genes in bovine mastitis. PMID:34753991
Computational screening of miRNAs and their targets in saffron (Crocus sativus L.) by transcriptome mining. PMID:34751821
mapMECFS: a portal to enhance data discovery across biological disciplines and collaborative sites. PMID:34749736
Pol3Base: a resource for decoding the interactome, expression, evolution, epitranscriptome and disease variations of Pol III-transcribed ncRNAs. PMID:34747466
MicroRNA-mediated bioengineering for climate-resilience in crops. PMID:34747296
Protein profiling reveals potential isomiR-associated cross-talks among RNAs in cholangiocarcinoma. PMID:34745457
Systematic Review and Bioinformatic Analysis of microRNA Expression in Autism Spectrum Disorder Identifies Pathways Associated With Cancer, Metabolism, Cell Signaling, and Cell Adhesion. PMID:34744804
RNA interference and crop protection against biotic stresses. PMID:34744371
Fibromine is a multi-omics database and mining tool for target discovery in pulmonary fibrosis. PMID:34741074
Putative MicroRNA-mRNA Networks Upon Mdfi Overexpression in C2C12 Cell Differentiation and Muscle Fiber Type Transformation. PMID:34738011
BDdb: a comprehensive platform for exploration and utilization of birth defect multi-omics data. PMID:34736471
Aberrant miRNA-mRNA regulatory network in polycystic ovary syndrome is associated with markers of insulin sensitivity and inflammation. PMID:34733957
Comprehensive Analysis of LIN28A in Chinese Patients With Early Onset Parkinson's Disease. PMID:34733315
JAMIR-eQTL: Japanese genome-wide identification of microRNA expression quantitative trait loci across dementia types. PMID:34730175
FASTAFS: file system virtualisation of random access compressed FASTA files. PMID:34724897
ViRBase v3.0: a virus and host ncRNA-associated interaction repository with increased coverage and annotation. PMID:34723320
Toward Integrated Multi-Omics Intervention: Rice Trait Improvement and Stress Management. PMID:34721467
High-quality reference genome and annotation aids understanding of berry development for evergreen blueberry (Vaccinium darrowii). PMID:34719668
MicroRNA-506 modulates insulin resistance in human adipocytes by targeting S6K1 and altering the IRS1/PI3K/AKT insulin signaling pathway. PMID:34718921
RNAInter v4.0: RNA interactome repository with redefined confidence scoring system and improved accessibility. PMID:34718726
Gene Ontology curation of the blood-brain barrier to improve the analysis of Alzheimer's and other neurological diseases. PMID:34697638
Introduction to Bioinformatics Resources for Post-transcriptional Regulation of Gene Expression. PMID:34694601
Biological Roles and Clinical Significance of Exosome-Derived Noncoding RNAs in Bladder Cancer. PMID:34692482
MicroRNAs in the Onset of Schizophrenia. PMID:34685659
Distinct Evolutionary Profiles and Functions of microRNA156 and microRNA529 in Land Plants. PMID:34681763
(In)Distinctive Role of Long Non-Coding RNAs in Common and Rare Ovarian Cancers. PMID:34680193
Identification of microRNAs in Silver Carp (Hypophthalmichthys molitrix) Response to Hypoxia Stress. PMID:34679939
Transcriptome dynamics during metamorphosis of imaginal discs into wings and thoracic dorsum in Apis mellifera castes. PMID:34674639
The Streptochaeta Genome and the Evolution of the Grasses. PMID:34671369
Faecal miRNA profiles associated with age, sex, BMI, and lifestyle habits in healthy individuals. PMID:34667192
NPCDR: natural product-based drug combination and its disease-specific molecular regulation. PMID:34664659
Quantifying full-length circular RNAs in cancer. PMID:34663689
Characterization of primary models of human trophoblast. PMID:34651188
Mechanism of siRNA production by a plant Dicer-RNA complex in dicing-competent conformation. PMID:34648373
Human Olfactory Ensheathing Cell-derived Extracellular Cesicles: miRNA Profile and Neuroprotective Effect. PMID:34645375
Integrated analysis of dysregulated microRNA and mRNA expression in intestinal epithelial cells following ethanol intoxication and burn injury. PMID:34642361
miRbiom: Machine-learning on Bayesian causal nets of RBP-miRNA interactions successfully predicts miRNA profiles. PMID:34637468
Three chromosome-level duck genome assemblies provide insights into genomic variation during domestication. PMID:34635656
SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks. PMID:34634810
Parkinson's disease and microRNAs - Lessons from model organisms and human studies. PMID:34634413
TSMDA: Target and symptom-based computational model for miRNA-disease-association prediction. PMID:34631283
Hsa-mir-548 family expression in human reproductive tissues. PMID:34625017
Role of miR-2392 in driving SARS-CoV-2 infection. PMID:34624208
Human microRNA similarity in breast cancer. PMID:34612484
Suppression of lncRNA NLRP3 inhibits NLRP3-triggered inflammatory responses in early acute lung injury. PMID:34599154
Selectivity of Exportin 5 binding to human precursor microRNAs. PMID:34592896
Identification and Elucidation of the Protective isomiRs in Lung Cancer Patient Prognosis. PMID:34589114
Altered microRNA and mRNA profiles during heart failure in the human sinoatrial node. PMID:34588502
Global identification of long non-coding RNAs involved in the induction of spinach flowering. PMID:34587906
Large-scale identification of extracellular plant miRNAs in mammals implicates their dietary intake. PMID:34587184
RNA-RNA interactions between SARS-CoV-2 and host benefit viral development and evolution during COVID-19 infection. PMID:34585235
Diagnostic and Prognostic Potential of MiR-379/656 MicroRNA Cluster in Molecular Subtypes of Breast Cancer. PMID:34575183
CRISPR/Cas13-Based Platforms for a Potential Next-Generation Diagnosis of Colorectal Cancer through Exosomes Micro-RNA Detection: A Review. PMID:34572866
Circulating MicroRNAs Highly Correlate to Expression of Cartilage Genes Potentially Reflecting OA Susceptibility-Towards Identification of Applicable Early OA Biomarkers. PMID:34572569
Pan-Cancer Analysis Reveals Common and Specific Relationships between Intragenic miRNAs and Their Host Genes. PMID:34572448
Cyclic Hypoxia Conditioning Alters the Content of Myoblast-Derived Extracellular Vesicles and Enhances Their Cell-Protective Functions. PMID:34572398
Differentially Regulated miRNAs and Their Related Molecular Pathways in Lichen Sclerosus. PMID:34571940
miRNATissueAtlas2: an update to the human miRNA tissue atlas. PMID:34570238
Identification of Novel Single-Nucleotide Variants With Potential of Mediating Malfunction of MicroRNA in Congenital Heart Disease. PMID:34568467
Integrating Genetic and Transcriptomic Data to Reveal Pathogenesis and Prognostic Markers of Pancreatic Adenocarcinoma. PMID:34567094
GH Overexpression Alters Spermatic Cells MicroRNAome Profile in Transgenic Zebrafish. PMID:34567067
Viral suppressor of RNA silencing in vascular plants also interferes with the development of the bryophyte Physcomitrella patens. PMID:34564869
Modulation of MicroRNA Processing by Dicer via Its Associated dsRNA Binding Proteins. PMID:34564319
CRISPR-Cas9 mediated OsMIR168a knockout reveals its pleiotropy in rice. PMID:34555252
PmiREN2.0: from data annotation to functional exploration of plant microRNAs. PMID:34554254
RNALocate v2.0: an updated resource for RNA subcellular localization with increased coverage and annotation. PMID:34551440
Role of Dicer-Dependent RNA Interference in Regulating Mycoparasitic Interactions. PMID:34549988
Genome-wide identification, phylogeny, and expression analysis of the bHLH gene family in tobacco (Nicotiana tabacum). PMID:34539114
MicroRNAs in Woody Plants. PMID:34531880
circMine: a comprehensive database to integrate, analyze and visualize human disease-related circRNA transcriptome. PMID:34530446
Association of Genetic Variants Affecting microRNAs and Pancreatic Cancer Risk. PMID:34527018
Effective tools for RNA-derived therapeutics: siRNA interference or miRNA mimicry. PMID:34522211
MicroRNA-497 induced by Clonorchis sinensis enhances the TGF-β/Smad signaling pathway to promote hepatic fibrosis by targeting Smad7. PMID:34521449
Systems analysis of miRNA biomarkers to inform drug safety. PMID:34510227
A near complete genome for goat genetic and genomic research. PMID:34507524
Characterization of microRNA expression in B cells derived from Japanese black cattle naturally infected with bovine leukemia virus by deep sequencing. PMID:34506539
Molecular Network Approach Reveals Rictor as a Central Target of Cardiac ProtectomiRs. PMID:34502448
Possible Roles of tRNA Fragments, as New Regulatory ncRNAs, in the Pathogenesis of Rheumatoid Arthritis. PMID:34502386
MiR1885 Regulates Disease Tolerance Genes in Brassica rapa during Early Infection with Plasmodiophora brassicae. PMID:34502341
ViMIC: a database of human disease-related virus mutations, integration sites and cis-effects. PMID:34500462
CancerMIRNome: an interactive analysis and visualization database for miRNome profiles of human cancer. PMID:34500460
MiR-100 overexpression attenuates high fat diet induced weight gain, liver steatosis, hypertriglyceridemia and development of metabolic syndrome in mice. PMID:34488621
MicroRNA‑93 knockdown inhibits acute myeloid leukemia cell growth via inactivating the PI3K/AKT pathway by upregulating DAB2. PMID:34476495
Genome-Wide Phylogenetic Analysis, Expression Pattern, and Transcriptional Regulatory Network of the Pig C/EBP Gene Family. PMID:34471342
Satellite-Like W-Elements: Repetitive, Transcribed, and Putative Mobile Genetic Factors with Potential Roles for Biology and Evolution of Schistosoma mansoni. PMID:34469545
DIANA-miTED: a microRNA tissue expression database. PMID:34469540
Inducible and reversible inhibition of miRNA-mediated gene repression in vivo. PMID:34463618
Efficient framework for predicting MiRNA-disease associations based on improved hybrid collaborative filtering. PMID:34461870
miR-425 regulates lipophagy via SIRT1 to promote sorafenib resistance in liver cancer. PMID:34457050
Far-Red Light-Induced Azolla filiculoides Symbiosis Sexual Reproduction: Responsive Transcripts of Symbiont Nostoc azollae Encode Transporters Whilst Those of the Fern Relate to the Angiosperm Floral Transition. PMID:34456937
In silico identification of MicroRNAs targeting the key nucleator of stress granules, G3BP: Promising therapeutics for SARS-CoV-2 infection. PMID:34456603
Detection of SARS-CoV-2 Derived Small RNAs and Changes in Circulating Small RNAs Associated with COVID-19. PMID:34452458
Evidence of Adaptive Evolution in Wolbachia-Regulated Gene DNMT2 and Its Role in the Dipteran Immune Response and Pathogen Blocking. PMID:34452330
Analysis of the Applicability of microRNAs in Peripheral Blood Leukocytes as Biomarkers of Sensitivity and Exposure to Fractionated Radiotherapy towards Breast Cancer. PMID:34445424
PlantMirP2: An Accurate, Fast and Easy-To-Use Program for Plant Pre-miRNA and miRNA Prediction. PMID:34440454
MiRNA-34c Regulates Bovine Sertoli Cell Proliferation, Gene Expression, and Apoptosis by Targeting the AXL Gene. PMID:34438849
Androgens alter the heterogeneity of small extracellular vesicles and the small RNA cargo in prostate cancer. PMID:34434533
MicroRNA Databases and Tools. PMID:34432277
MicroRNA Targeting. PMID:34432276
Functional Annotation of MicroRNAs Using Existing Resources. PMID:34432273
Regulation of MicroRNAs. PMID:34432271
Targeting miRNA by Natural Products: A Novel Therapeutic Approach for Nonalcoholic Fatty Liver. PMID:34426744
Overview on the Role of E-Cadherin in Gastric Cancer: Dysregulation and Clinical Implications. PMID:34422902
Characterizing miRNA-lncRNA Interplay. PMID:34417757
Ten simple rules for creating reusable pathway models for computational analysis and visualization. PMID:34411100
Immunological Involvement of MicroRNAs in the Key Events of Systemic Lupus Erythematosus. PMID:34408748
Discovery of miRNAs and Development of Heat-Responsive miRNA-SSR Markers for Characterization of Wheat Germplasm for Terminal Heat Tolerance Breeding. PMID:34394189
EVAtlas: a comprehensive database for ncRNA expression in human extracellular vesicles. PMID:34387689
Long transcripts minus touchdown qPCR (LTMT-qPCR): a simplified and convenient method for the screening and quantification of microRNA profiles. PMID:34376779
Circular RNA Circ_0005564 promotes osteogenic differentiation of bone marrow mesenchymal cells in osteoporosis. PMID:34374320
Systematic Bioinformatic Analyses of Nutrigenomic Modifications by Polyphenols Associated with Cardiometabolic Health in Humans-Evidence from Targeted Nutrigenomic Studies. PMID:34371836
Coordinated Expressional Landscape of the Human Placental miRNome and Transcriptome. PMID:34368147
Genome-Wide Identification and Evolutionary Analysis of Gossypium Tubby-Like Protein (TLP) Gene Family and Expression Analyses During Salt and Drought Stress. PMID:34367198
PlasmiR: A Manual Collection of Circulating microRNAs of Prognostic and Diagnostic Value. PMID:34359584
A small-molecule fluorescence probe ANP77 for sensing RNA internal loop of C, U and A/CC motifs and their binding molecules. PMID:34358308
Pan-cancer chromatin analysis of the human vtRNA genes uncovers their association with cancer biology. PMID:34354812
MiREDiBase, a manually curated database of validated and putative editing events in microRNAs. PMID:34349127
Small RNA expression and miRNA modification dynamics in human oocytes and early embryos. PMID:34340992
Integrative Analysis Identified a 6-miRNA Prognostic Signature in Nasopharyngeal Carcinoma. PMID:34336826
Altered microRNA expression in COVID-19 patients enables identification of SARS-CoV-2 infection. PMID:34320031
Planarian Anatomy Ontology: a resource to connect data within and across experimental platforms. PMID:34318308
Stool microRNA profiles reflect different dietary and gut microbiome patterns in healthy individuals. PMID:34315772
Landscape of tissue-specific RNA Editome provides insight into co-regulated and altered gene expression in pigs (Sus-scrofa). PMID:34314293
Identifying potential human and medicinal plant microRNAs against SARS-CoV-2 3'UTR region: A computational genomics assessment. PMID:34311261
miRge3.0: a comprehensive microRNA and tRF sequencing analysis pipeline. PMID:34308351
Precision medicine: Concept and tools. PMID:34305276
Pax5 regulates B cell immunity by promoting PI3K signaling via PTEN down-regulation. PMID:34301800
The Role of microRNA Let-7d in Female Malignancies and Diseases of the Female Reproductive Tract. PMID:34298978
Identification and Roles of miR-29b-1-3p and miR29a-3p-Regulated and Non-Regulated lncRNAs in Endocrine-Sensitive and Resistant Breast Cancer Cells. PMID:34298743
Extracellular vesicle miRNA predict FDG-PET status in patients with classical Hodgkin Lymphoma. PMID:34295456
PIWI-interacting RNAs: Mitochondria-based biogenesis and functions in cancer. PMID:34291132
Increased PD-1 Level in Severe Cervical Injury Is Associated With the Rare Programmed Cell Death 1 (PDCD1) rs36084323 A Allele in a Dominant Model. PMID:34290992
Trophoblast derived extracellular vesicles specifically alter the transcriptome of endometrial cells and may constitute a critical component of embryo-maternal communication. PMID:34289864
MicroRNAs: understanding their role in gene expression and cancer. PMID:34287566
Long Noncoding RNA IFITM4P Regulates Host Antiviral Responses by Acting as a Competing Endogenous RNA. PMID:34287042
Hairpin sequence and structure is associated with features of isomiR biogenesis. PMID:34286662
Non-coding RNAs in cardiac regeneration: Mechanism of action and therapeutic potential. PMID:34284952
Non-coding RNAs in the interaction between rice and Meloidogyne graminicola. PMID:34284724
Circulating miRNA is a useful diagnostic biomarker for nonalcoholic steatohepatitis in nonalcoholic fatty liver disease. PMID:34282172
The Roles of MicroRNAs in Tendon Healing and Regeneration. PMID:34277629
Single-cell microRNA sequencing method comparison and application to cell lines and circulating lung tumor cells. PMID:34262050
The Welwitschia genome reveals a unique biology underpinning extreme longevity in deserts. PMID:34253727
High-throughput analysis of the interactions between viral proteins and host cell RNAs. PMID:34246161
Human blood microRNA hsa-miR-21-5p induces vitellogenin in the mosquito Aedes aegypti. PMID:34244602
Prediction of differentially expressed microRNAs in blood as potential biomarkers for Alzheimer's disease by meta-analysis and adaptive boosting ensemble learning. PMID:34243793
Structure-aware machine learning identifies microRNAs operating as Toll-like receptor 7/8 ligands. PMID:34241565
A hybrid CNN-LSTM model for pre-miRNA classification. PMID:34239004
Integrative analysis of genomic and epigenomic data reveal underlying superenhancer-mediated microRNA regulatory network for human bone mineral density. PMID:34230965
Analysis of lncRNA, miRNA, and mRNA Expression Profiling in Type I IFN and Type II IFN Overexpressed in Porcine Alveolar Macrophages. PMID:34222462
Exosomal miR-1246 from glioma patient body fluids drives the differentiation and activation of myeloid-derived suppressor cells. PMID:34217892
ANMDA: anti-noise based computational model for predicting potential miRNA-disease associations. PMID:34215183
Conservation of Zebrafish MicroRNA-145 and Its Role during Neural Crest Cell Development. PMID:34209401
An Integrative Transcriptomic and Methylation Approach for Identifying Differentially Expressed Circular RNAs Associated with DNA Methylation Change. PMID:34201256
Subcellular Localization of miRNAs and Implications in Cellular Homeostasis. PMID:34199614
Identification of Circular RNAs by Multiple Displacement Amplification and Their Involvement in Plant Development. PMID:34195957
Transcriptome signature of miRNA-26b KO mouse model suggests novel targets. PMID:34193044
The MicroRNA Family Gets Wider: The IsomiRs Classification and Role. PMID:34178993
Targeting microRNAs to Regulate the Integrity of the Blood-Brain Barrier. PMID:34178963
miR-204: Molecular Regulation and Role in Cardiovascular and Renal Diseases. PMID:34176282
Comparative analysis identifies micro-RNA associated with nutrient homeostasis, development and stress response in Arabidopsis thaliana upon high Zn and metal hyperaccumulator Arabidopsis halleri. PMID:34171137
Metapath-Based Deep Convolutional Neural Network for Predicting miRNA-Target Association on Heterogeneous Network. PMID:34170473
Multilevel systems biology analysis of lung transcriptomics data identifies key miRNAs and potential miRNA target genes for SARS-CoV-2 infection. PMID:34157472
Hypoxia-Induced miR-148a Downregulation Contributes to Poor Survival in Colorectal Cancer. PMID:34135940
Comparative Analysis of MicroRNA Expression Profiles Between Skeletal Muscle- and Adipose-Derived Exosomes in Pig. PMID:34135937
A structural deep network embedding model for predicting associations between miRNA and disease based on molecular association network. PMID:34135401
Machine learning-based prediction of survival prognosis in cervical cancer. PMID:34134623
Long-lived macrophage reprogramming drives spike protein-mediated inflammasome activation in COVID-19. PMID:34133077
Aux/IAA and ARF Gene Families in Salix suchowensis: Identification, Evolution, and Dynamic Transcriptome Profiling During the Plant Growth Process. PMID:34122487
MicroRNAs: Harbingers and shapers of periodontal inflammation. PMID:34120836
β-elemene alleviates airway stenosis via the ILK/Akt pathway modulated by MIR143HG sponging miR-1275. PMID:34118875
Characterization of nucleic acids from extracellular vesicle-enriched human sweat. PMID:34103018
Investigation of long non-coding RNAs as regulatory players of grapevine response to powdery and downy mildew infection. PMID:34103007
RNA structure probing reveals the structural basis of Dicer binding and cleavage. PMID:34099665
Coordinated action of human papillomavirus type 16 E6 and E7 oncoproteins on competitive endogenous RNA (ceRNA) network members in primary human keratinocytes. PMID:34098875
Screening of non-alcoholic steatohepatitis (NASH)-related datasets and identification of NASH-related genes. PMID:34093943
Identification of 3'-UTR single nucleotide variants and prediction of select protein imbalance in mesial temporal lobe epilepsy patients. PMID:34086756
Reconstruction of circRNA-miRNA-mRNA associated ceRNA networks reveal functional circRNAs in intracerebral hemorrhage. PMID:34078991
noisyR: enhancing biological signal in sequencing datasets by characterizing random technical noise. PMID:34076236
Methylation and Noncoding RNAs in Gastric Cancer: Everything Is Connected. PMID:34073603
Reactivation of Multiple Fetal miRNAs in Lung Adenocarcinoma. PMID:34072436
Small RNA-Sequencing: Approaches and Considerations for miRNA Analysis. PMID:34071824
MicroRNAs as Epigenetic Determinants of Treatment Response and Potential Therapeutic Targets in Prostate Cancer. PMID:34069147
Epigenetics, microRNA and Metabolic Syndrome: A Comprehensive Review. PMID:34068765
Gene Expression Correlation Analysis Reveals MYC-NAC Regulatory Network in Cotton Pigment Gland Development. PMID:34066899
Small-RNA Sequencing Reveals Altered Skeletal Muscle microRNAs and snoRNAs Signatures in Weanling Male Offspring from Mouse Dams Fed a Low Protein Diet during Lactation. PMID:34064819
Identification of miRNAs and Their Targets Involved in Flower and Fruit Development across Domesticated and Wild Capsicum Species. PMID:34064462
Epigenetic Mechanisms Involved in Cisplatin-Induced Nephrotoxicity: An Update. PMID:34063951
Electrophoretic mobility shift as a molecular beacon-based readout for miRNA detection. PMID:34062334
TSCCA: A tensor sparse CCA method for detecting microRNA-gene patterns from multiple cancers. PMID:34061840
Interrelationship between miRNA and splicing factors in pancreatic ductal adenocarcinoma. PMID:34057028
miRcorrNet: machine learning-based integration of miRNA and mRNA expression profiles, combined with feature grouping and ranking. PMID:34055490
ncFANs v2.0: an integrative platform for functional annotation of non-coding RNAs. PMID:34050762
emiRIT: a text-mining-based resource for microRNA information. PMID:34048547
Characterization of microRNAs from neem (Azadirachta indica) and their tissue-specific expression study in leaves and stem. PMID:34040926
MicroRNA-1: Diverse role of a small player in multiple cancers. PMID:34034986
The MicroRNA Landscape of MYCN-Amplified Neuroblastoma. PMID:34026620
Longitudinal stability of salivary microRNA biomarkers in children and adolescents with autism spectrum disorder. PMID:34025747
MicroRNA-Mediated Host-Pathogen Interactions Between Bombyx mori and Viruses. PMID:34025458
miRNAs of Aedes aegypti (Linnaeus 1762) conserved in six orders of the class Insecta. PMID:34021209
A eutherian-specific microRNA controls the translation of Satb2 in a model of cortical differentiation. PMID:34019815
CNVxplorer: a web tool to assist clinical interpretation of CNVs in rare disease patients. PMID:34019647
The role of microRNA in cancer cachexia and muscle wasting: A review article. PMID:34012527
miRTargetLink 2.0-interactive miRNA target gene and target pathway networks. PMID:34009375
Increased hippocampal excitability in miR-324-null mice. PMID:34001919
Accessing Livestock Resources in Ensembl. PMID:33995484
Next-Generation Sequencing Identification and Characterization of MicroRNAs in Dwarfed Citrus Trees Infected With Citrus Dwarfing Viroid in High-Density Plantings. PMID:33995303
MicroRNA Dysregulation in Parkinson's Disease: A Narrative Review. PMID:33994934
microRNAs: New-Age Panacea in Cancer Therapeutics. PMID:33994728
Dysregulation of miR-381-3p and miR-23b-3p in skeletal muscle could be a possible estimator of early post-mortem interval in rats. PMID:33986977
TarDB: an online database for plant miRNA targets and miRNA-triggered phased siRNAs. PMID:33985427
Integrative modeling identifies genetic ancestry-associated molecular correlates in human cancer. PMID:33982016
Differential expression of miRNAs in the presence of B chromosome in the cichlid fish Astatotilapia latifasciata. PMID:33980143
MiR-3130-5p is an intermediate modulator of 2q33 and influences the invasiveness of lung adenocarcinoma by targeting NDUFS1. PMID:33978320
MicroRNA-Mediated Regulation of Initial Host Responses in a Symbiotic Organ. PMID:33975964
Endothelial Exosome Plays a Functional Role during Rickettsial Infection. PMID:33975935
Genome-Wide Changes of Regulatory Non-Coding RNAs Reveal Pollen Development Initiated at Ecodormancy in Peach. PMID:33968979
miR-221-3p and miR-222-3p regulate the SOCS3/STAT3 signaling pathway to downregulate the expression of NIS and reduce radiosensitivity in thyroid cancer. PMID:33968182
Non-Coding RNAs Regulate Placental Trophoblast Function and Participate in Recurrent Abortion. PMID:33967782
Construction of circRNA-miRNA-mRNA network in the pathogenesis of recurrent implantation failure using integrated bioinformatics study. PMID:33960101
EBV miRNAs are potent effectors of tumor cell transcriptome remodeling in promoting immune escape. PMID:33956915
MicroRNA775 regulates intrinsic leaf size and reduces cell wall pectin levels by targeting a galactosyltransferase gene in Arabidopsis. PMID:33955485
Variability in porcine microRNA genes and its association with mRNA expression and lipid phenotypes. PMID:33947333
Huntington's disease mice and human brain tissue exhibit increased G3BP1 granules and TDP43 mislocalization. PMID:33945510
Bioinformatic analysis and validation of microRNA-508-3p as a protective predictor by targeting NR4A3/MEK axis in pulmonary arterial hypertension. PMID:33942991
Deciphering the Variants Located in the MIR196A2, MIR146A, and MIR423 with Type-2 Diabetes Mellitus in Pakistani Population. PMID:33925232
Barley Seeds miRNome Stability during Long-Term Storage and Aging. PMID:33919202
Could MicroRNAs Be Useful Tools to Improve the Diagnosis and Treatment of Rare Gynecological Cancers? A Brief Overview. PMID:33917022
MicroRNA Regulation of Breast Cancer Stemness. PMID:33916548
Dysregulation of circulating miRNAs promotes the pathogenesis of diabetes-induced cardiomyopathy. PMID:33909697
Extracellular Vesicles from Human Adipose-Derived Mesenchymal Stem Cells: A Review of Common Cargos. PMID:33904115
The microRNA analysis portal is a next-generation tool for exploring and analyzing miRNA-focused data in the literature. PMID:33903708
Topic Evolution Analysis for Omics Data Integration in Cancers. PMID:33898421
A cohort of Caenorhabditis species lacking the highly conserved let-7 microRNA. PMID:33890616
MicroRNAs in amniotic fluid and maternal blood plasma associated with sex determination and early gonad differentiation in cattle†. PMID:33889937
Computational Methods and Online Resources for Identification of piRNA-Related Molecules. PMID:33886096
Expression of Mir-21 and Mir-103a in Toxocara canis: Potential for Diagnosis of Human Toxocariasis. PMID:33884013
Single nucleotide polymorphisms affect miRNA target prediction in bovine. PMID:33882076
Small RNA sequencing reveals distinct nuclear microRNAs in pig granulosa cells during ovarian follicle growth. PMID:33879202
Transcriptomic analysis to infer key molecular players involved during host response to NDV challenge in Gallus gallus (Leghorn & Fayoumi). PMID:33875770
miRMaster 2.0: multi-species non-coding RNA sequencing analyses at scale. PMID:33872372
A chromosome-level reference genome of the hazelnut, Corylus heterophylla Fisch. PMID:33871007
An Atlas of Genomic Resources for Studying Rosaceae Fruits and Ornamentals. PMID:33868343
Genome-wide analysis of lncRNA stability in human. PMID:33861746
Evaluation and application of tools for the identification of known microRNAs in plants. PMID:33854848
Coding and non-coding roles of MOCCI (C15ORF48) coordinate to regulate host inflammation and immunity. PMID:33837217
Exploring Noninvasive Biomarkers with the miRandola Database: A Tool for Translational Medicine. PMID:33835456
In Silico Analysis of Micro-RNA Sequencing Data. PMID:33835446
Whole genome variation in 27 Mexican indigenous populations, demographic and biomedical insights. PMID:33831079
Current Status of MicroRNAs that Target the Wnt Signaling Pathway in Regulation of Osteogenesis and Bone Metabolism: A Review. PMID:33828067
Computational methods for the ab initio identification of novel microRNA in plants: a systematic review. PMID:33816886
Digging into bivalve miRNAomes: between conservation and innovation. PMID:33813895
Identification of sex differentiation-related microRNA and long non-coding RNA in Takifugu rubripes gonads. PMID:33811216
Epigenetic Regulation of MicroRNA Clusters and Families during Tumor Development. PMID:33809566
Recent Highlights of Research on miRNAs as Early Potential Biomarkers for Cardiovascular Complications of Type 2 Diabetes Mellitus. PMID:33808800
An Analysis of Differentially Expressed Coding and Long Non-Coding RNAs in Multiple Models of Skeletal Muscle Atrophy. PMID:33806354
Protection against Glucolipotoxicity by High Density Lipoprotein in Human PANC-1 Hybrid 1.1B4 Pancreatic Beta Cells: The Role of microRNA. PMID:33805674
Dual Effect of Taxifolin on ZEB2 Cancer Signaling in HepG2 Cells. PMID:33803107
Small Non-Coding RNAs at the Crossroads of Regulatory Pathways Controlling Somatic Embryogenesis in Seed Plants. PMID:33803088
Extracellular Vesicles as Biomarkers Carriers in Bladder Cancer: Diagnosis, Surveillance, and Treatment. PMID:33803085
Noncoding RNAs in Glioblastoma: Emerging Biological Concepts and Potential Therapeutic Implications. PMID:33800703
MicroRNAs: Potential Targets for Developing Stress-Tolerant Crops. PMID:33800690
Non-Coding RNA Signatures of B-Cell Acute Lymphoblastic Leukemia. PMID:33799946
A noncanonical microRNA derived from the snaR-A noncoding RNA targets a metastasis inhibitor. PMID:33795480
Argonaute-CLIP delineates versatile, functional RNAi networks in Aedes aegypti, a major vector of human viruses. PMID:33794184
Asterix/Gtsf1 links tRNAs and piRNA silencing of retrotransposons. PMID:33789107
Urine-derived extracellular vesicle miRNAs as possible biomarkers for and mediators of necrotizing enterocolitis: A proof of concept study. PMID:33785202
A novel Transposable element-derived microRNA participates in plant immunity to rice blast disease. PMID:33780108
Roles of Non-Coding RNAs in Cervical Cancer Metastasis. PMID:33777808
MicroRNA-mediated regulation of glucose and lipid metabolism. PMID:33772227
Expression characteristics of pineal miRNAs at ovine different reproductive stages and the identification of miRNAs targeting the AANAT gene. PMID:33765915
A tobacco ringspot virus-based vector system for gene and microRNA function studies in cucurbits. PMID:33764466
Small RNAs as biomarkers to differentiate benign and malign prostate diseases: An alternative for transrectal punch biopsy of the prostate? PMID:33760831
Chi-miR-370-3p regulates hair follicle morphogenesis of Inner Mongolian cashmere goats. PMID:33755111
Integrated microRNA and transcriptome profiling reveal key miRNA-mRNA interaction pairs associated with seed development in Tartary buckwheat (Fagopyrum tataricum). PMID:33750309
Pi-starvation induced transcriptional changes in barley revealed by a comprehensive RNA-Seq and degradome analyses. PMID:33750301
Integrated intra- and intercellular signaling knowledge for multicellular omics analysis. PMID:33749993
Exploring dysregulated miRNAs in cryptorchidism: a systematic review. PMID:33729892
Tumor IsomiR Encyclopedia (TIE): a pancancer database of miRNA isoforms. PMID:33729437
Targets and regulation of microRNA-652-3p in homoeostasis and disease. PMID:33712860
DisCoVering potential candidates of RNAi-based therapy for COVID-19 using computational methods. PMID:33680575
Integrative approaches for analysis of mRNA and microRNA high-throughput data. PMID:33680358
MicroRNA expression profile in bovine mammary gland parenchyma infected by coagulase-positive or coagulase-negative staphylococci. PMID:33676576
Aberrant Expression of microRNA Clusters in Head and Neck Cancer Development and Progression: Current and Future Translational Impacts. PMID:33673471
miRNAture-Computational Detection of microRNA Candidates. PMID:33673400
Identification and Validation of New Cancer Stem Cell-Related Genes and Their Regulatory microRNAs in Colorectal Cancerogenesis. PMID:33670246
Low Expression of miR-375 and miR-190b Differentiates Grade 3 Patients with Endometrial Cancer. PMID:33668431
Distinguishable Prognostic miRNA Signatures of Head and Neck Squamous Cell Cancer With or Without HPV Infection. PMID:33643915
Genome-Wide Identification and Characterization of Potato Long Non-coding RNAs Associated With Phytophthora infestans Resistance. PMID:33643350
Comparative analysis of long noncoding RNAs in angiosperms and characterization of long noncoding RNAs in response to heat stress in Chinese cabbage. PMID:33642591
sRNAanno-a database repository of uniformly annotated small RNAs in plants. PMID:33642576
MicroRNA Mimics or Inhibitors as Antiviral Therapeutic Approaches Against COVID-19. PMID:33638807
Overview of host miRNA properties and their association with epigenetics, long non-coding RNAs, and Xeno-infectious factors. PMID:33632341
Identification and molecular characterization of miRNAs and their target genes associated with seed development through small RNA sequencing in chickpea. PMID:33630193
Plasma cells shape the mesenchymal identity of ovarian cancers through transfer of exosome-derived microRNAs. PMID:33627414
Mutation of a major CG methylase alters genome-wide lncRNA expression in rice. PMID:33617633
Identification of anti-inflammatory vesicle-like nanoparticles in honey. PMID:33613874
miRNAs as biomarkers for early cancer detection and their application in the development of new diagnostic tools. PMID:33593374
Roles of host small RNAs in the evolution and host tropism of coronaviruses. PMID:33587745
Twist activates miR-22 to suppress estrogen receptor alpha in breast cancer. PMID:33582945
Depletion of erythropoietic miR-486-5p and miR-451a improves detectability of rare microRNAs in peripheral blood-derived small RNA sequencing libraries. PMID:33575555
The Role of miRNAs, miRNA Clusters, and isomiRs in Development of Cancer Stem Cell Populations in Colorectal Cancer. PMID:33572600
Taxonomic Sampling and Rare Genomic Changes Overcome Long-Branch Attraction in the Phylogenetic Placement of Pseudoscorpions. PMID:33565584
Chi-miR-130b-3p regulates Inner Mongolia cashmere goat skin hair follicles in fetuses by targeting Wnt family member 10A. PMID:33561234
Role of Transposable Elements in Gene Regulation in the Human Genome. PMID:33557056
Role of microRNAs in Lung Carcinogenesis Induced by Asbestos. PMID:33546236
The enhancer activity of long interspersed nuclear element derived microRNA 625 induced by NF-κB. PMID:33542430
PhasiRNAnalyzer: an integrated analyser for plant phased siRNAs. PMID:33541212
Bringing MicroRNAs to Light: Methods for MicroRNA Quantification and Visualization in Live Cells. PMID:33537295
miRNA-Based Therapeutics in the Era of Immune-Checkpoint Inhibitors. PMID:33530393
Identifying daily changes in circRNAs and circRNA-associated-ceRNA networks in the rat pineal gland. PMID:33526984
MicroRNA Profiles in Monocyte-Derived Macrophages Generated by Interleukin-27 and Human Serum: Identification of a Novel HIV-Inhibiting and Autophagy-Inducing MicroRNA. PMID:33525571
Identification of Potential Prognostic Competing Triplets in High-Grade Serous Ovarian Cancer. PMID:33519912
Intake of Natural Compounds and Circulating microRNA Expression Levels: Their Relationship Investigated in Healthy Subjects With Different Dietary Habits. PMID:33519486
Reporting on the Role of miRNAs and Affected Pathways on the Molecular Backbone of Ovarian Insufficiency: A Systematic Review and Critical Analysis Mapping of Future Research. PMID:33511114
Translational control of enzyme scavenger expression with toxin-induced micro RNA switches. PMID:33510250
Comparative miRNA signatures among Sahiwal and Frieswal cattle breeds during summer stress. PMID:33505834
miRNA-Dependent CD4+ T Cell Differentiation in the Pathogenesis of Multiple Sclerosis. PMID:33505725
Recent Advances in miRNA Delivery Systems. PMID:33498244
Non-coding RNA crosstalk with nuclear receptors in liver disease. PMID:33497819
Improvement, identification, and target prediction for miRNAs in the porcine genome by using massive, public high-throughput sequencing data. PMID:33493272
The Impact of Air Pollution Exposure on the MicroRNA Machinery and Lung Cancer Development. PMID:33477935
IsoMiRmap-fast, deterministic, and exhaustive mining of isomiRs from short RNA-seq datasets. PMID:33471076
Hypoxia-inducible miR-196a modulates glioblastoma cell proliferation and migration through complex regulation of NRAS. PMID:33469841
Giant lungfish genome elucidates the conquest of land by vertebrates. PMID:33461212
Dicer-independent snRNA/snoRNA-derived nuclear RNA 3 regulates tumor-associated macrophage function by epigenetically repressing inducible nitric oxide synthase transcription. PMID:33455092
lncRNAS56464.1 as a ceRNA promotes the proliferation of fibroblast‑like synoviocytes in experimental arthritis via the Wnt signaling pathway and sponges miR‑152‑3p. PMID:33448322
Genome-wide identification, characterization and transcriptional profiling of NHX-type (Na+/H+) antiporters under salinity stress in soybean. PMID:33442515
Novel circRNA discovery in sheep shows evidence of high backsplice junction conservation. PMID:33432020
MicroRNA bta-miR-365-3p inhibits proliferation but promotes differentiation of primary bovine myoblasts by targeting the activin A receptor type I. PMID:33431058
Environmental RNAi pathways in the two-spotted spider mite. PMID:33421998
A mosquito small RNA genomics resource reveals dynamic evolution and host responses to viruses and transposons. PMID:33419731
Transcriptome analysis provides insights into the responses of sweet potato to sweet potato virus disease (SPVD). PMID:33412165
Associations between stool micro-transcriptome, gut microbiota, and infant growth. PMID:33407969
Decreased miR-132 plays a crucial role in diabetic encephalopathy by regulating the GSK-3β/Tau pathway. PMID:33406505
A pan-cancer atlas of somatic mutations in miRNA biogenesis genes. PMID:33406242
Interplay between host non-coding RNAs and influenza viruses. PMID:33404285
An Emerging Role of miRNAs in Neurodegenerative Diseases: Mechanisms and Perspectives on miR146a. PMID:33403895
The 2021 Nucleic Acids Research database issue and the online molecular biology database collection. PMID:33396976
isomiRs-Hidden Soldiers in the miRNA Regulatory Army, and How to Find Them? PMID:33396892
Specific MiRNAs in naïve T cells associated with Hepatitis C Virus-induced Hepatocellular Carcinoma. PMID:33391397
Stimulation of Mytilus galloprovincialis Hemocytes With Different Immune Challenges Induces Differential Transcriptomic, miRNomic, and Functional Responses. PMID:33391272
Plant miR171 modulates mTOR pathway in HEK293 cells by targeting GNA12. PMID:33386590
Bulges control pri-miRNA processing in a position and strand-dependent manner. PMID:33382955
miRNA Targets: From Prediction Tools to Experimental Validation. PMID:33374478
Longitudinal transcriptome analyses show robust T cell immunity during recovery from COVID-19. PMID:33361761
Discovery and functional understanding of MiRNAs in molluscs: a genome-wide profiling approach. PMID:33356816
Premature MicroRNA-Based Therapeutic: A "One-Two Punch" against Cancers. PMID:33353171
Chemical carcinogen-induced rat mammary carcinogenesis is a potential model of p21-activated kinase positive female breast cancer. PMID:33346690
Hypoxia-Associated Prognostic Markers and Competing Endogenous RNA Co-Expression Networks in Breast Cancer. PMID:33344235
Genome-Wide Analysis of the Expression of Circular RNA Full-Length Transcripts and Construction of the circRNA-miRNA-mRNA Network in Cervical Cancer. PMID:33330502
MicroRNAs in Skeletal Muscle and Hints on Their Potential Role in Muscle Wasting During Cancer Cachexia. PMID:33330108
Tribbles-1 Expression and Its Function to Control Inflammatory Cytokines, Including Interleukin-8 Levels are Regulated by miRNAs in Macrophages and Prostate Cancer Cells. PMID:33329538
miRNA-Mediated Immune Regulation in Islet Autoimmunity and Type 1 Diabetes. PMID:33329406
Identifying cell-enriched miRNAs in kidney injury and repair. PMID:33328386
Ancient microRNA profiles of a 14,300-year-old canid samples confirm taxonomic origin and give glimpses into tissue-specific gene regulation from the Pleistocene. PMID:33323528
MicroRNA Expression Profiling, Target Identification, and Validation in Chondrocytes. PMID:33315201
Long-term exposure of human endothelial cells to metformin modulates miRNAs and isomiRs. PMID:33311640
Run or Die in the Evolution of New MicroRNAs-Testing the Red Queen Hypothesis on De Novo New Genes. PMID:33306129
Validation of human microRNA target pathways enables evaluation of target prediction tools. PMID:33305319
Translation is required for miRNA-dependent decay of endogenous transcripts. PMID:33300180
MiR-CLIP reveals iso-miR selective regulation in the miR-124 targetome. PMID:33300035
Mi-RNA-888-5p Is Involved in S-Adenosylmethionine Antitumor Effects in Laryngeal Squamous Cancer Cells. PMID:33297397
CoolMPS: evaluation of antibody labeling based massively parallel non-coding RNA sequencing. PMID:33290507
Baseline Assessment of Circulating MicroRNAs Near Diagnosis of Type 1 Diabetes Predicts Future Stimulated Insulin Secretion. PMID:33277338
A new decade and new data at SoyBase, the USDA-ARS soybean genetics and genomics database. PMID:33264401
Autism-associated miR-873 regulates ARID1B, SHANK3 and NRXN2 involved in neurodevelopment. PMID:33262327
Of rAAV and Men: From Genetic Neuromuscular Disorder Efficacy and Toxicity Preclinical Studies to Clinical Trials and Back. PMID:33260623
Inhibition of miR-29-3p isoforms via tough decoy suppresses osteoblast function in homeostasis but promotes intermittent parathyroid hormone-induced bone anabolism. PMID:33253931
MicroRNA expression profiling reveals potential roles for microRNA in the liver during pigeon (Columba livia) development. PMID:33248553
DIANA-miRGen v4: indexing promoters and regulators for more than 1500 microRNAs. PMID:33245765
Circulating miRNA Spaceflight Signature Reveals Targets for Countermeasure Development. PMID:33242410
Comprehensive analysis of neuronal guidance cue expression regulation during monocyte-to-macrophage differentiation reveals post-transcriptional regulation of semaphorin7A by the RNA-binding protein quaking. PMID:33241976
Underpinning miRNA-miRNA co-functional interaction patterns in the metabolism of Oryza sativa by genome-scale network analysis. PMID:33241156
Regulation of microRNA-497 expression in human cancer. PMID:33240429
Conserved Genomic Terminals of SARS-CoV-2 as Coevolving Functional Elements and Potential Therapeutic Targets. PMID:33239366
Diagnostic and Therapeutic Implications of microRNAs in Non-Small Cell Lung Cancer. PMID:33233641
HumiR: Web Services, Tools and Databases for Exploring Human microRNA Data. PMID:33233537
Integrated analysis of a competing endogenous RNA network reveals an 11-lncRNA prognostic signature in ovarian cancer. PMID:33223503
Are spliced ncRNA host genes distinct classes of lncRNAs? PMID:33219910
Rfam 14: expanded coverage of metagenomic, viral and microRNA families. PMID:33211869
Single Nucleotide Polymorphism rs11136000 of CLU Gene (Clusterin, ApoJ) and the Risk of Late-Onset Alzheimer's Disease in a Central European Population. PMID:33206315
FishDB: an integrated functional genomics database for fishes. PMID:33203359
The Enigmatic Role of Serum & Glucocorticoid Inducible Kinase 1 in the Endometrium. PMID:33195190
MiRNAs: A Powerful Tool in Deciphering Gynecological Malignancies. PMID:33194751
Biomarker Discovery for the Carcinogenic Heterogeneity Between Colon and Rectal Cancers Based on lncRNA-Associated ceRNA Network Analysis. PMID:33194594
Integrative Network Analysis of Predicted miRNA-Targets Regulating Expression of Immune Response Genes in Bovine Coronavirus Infection. PMID:33193717
The Physiological MicroRNA Landscape in Nipple Aspirate Fluid: Differences and Similarities with Breast Tissue, Breast Milk, Plasma and Serum. PMID:33187146
Genome-Wide Differential DNA Methylation and miRNA Expression Profiling Reveals Epigenetic Regulatory Mechanisms Underlying Nitrogen-Limitation-Triggered Adaptation and Use Efficiency Enhancement in Allotetraploid Rapeseed. PMID:33182819
deepBase v3.0: expression atlas and interactive analysis of ncRNAs from thousands of deep-sequencing data. PMID:33175131
Comprehensive profiling of extracellular RNA in HPV-induced cancers using an improved pipeline for small RNA-seq analysis. PMID:33173155
Transcriptional and post-transcriptional regulation of the pregnane X receptor: a rationale for interindividual variability in drug metabolism. PMID:33164107
Aging Induces Profound Changes in sncRNA in Rat Sperm and These Changes Are Modified by Perinatal Exposure to Environmental Flame Retardant. PMID:33158036
The multifaceted roles of microRNAs in differentiation. PMID:33152557
Genenames.org: the HGNC and VGNC resources in 2021. PMID:33152070
Circulating miR-1246 in the Progression of Chronic Obstructive Pulmonary Disease (COPD) in Patients from the BODE Cohort. PMID:33149570
Spliceosome-Associated microRNAs Signify Breast Cancer Cells and Portray Potential Novel Nuclear Targets. PMID:33143250
A Comprehensive Analysis of MicroRNAs Expressed in Susceptible and Resistant Rice Cultivars during Rhizoctonia solani AG1-IA Infection Causing Sheath Blight Disease. PMID:33120987
New Insights on the Mobility of Viral and Host Non-Coding RNAs Reveal Extracellular Vesicles as Intriguing Candidate Antiviral Targets. PMID:33114356
Tissue and circulating microRNAs as biomarkers of response to obesity treatment strategies. PMID:33111214
Checkpoint therapeutic target database (CKTTD): the first comprehensive database for checkpoint targets and their modulators in cancer immunotherapy. PMID:33109630
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. PMID:33106848
Determinants of correlated expression of transcription factors and their target genes. PMID:33104784
Construction and Characterization of a Synergistic lncRNA-miRNA Network Reveals a Crucial and Prognostic Role of lncRNAs in Colon Cancer. PMID:33101392
MicroRNAs in Lung Cancer Oncogenesis and Tumor Suppression: How it Can Improve the Clinical Practice? PMID:33093800
Extracellular microRNA 3' end modification across diverse body fluids. PMID:33092484
Contribution of miRNAs, tRNAs and tRFs to Aberrant Signaling and Translation Deregulation in Lung Cancer. PMID:33092114
Seq-SymRF: a random forest model predicts potential miRNA-disease associations based on information of sequences and clinical symptoms. PMID:33087810
Identification of key sequence features required for microRNA biogenesis in plants. PMID:33087730
The miRNA Profile in Non-Hodgkin's Lymphoma Patients with Secondary Myelodysplasia. PMID:33086588
MicroRNA dynamics during hibernation of the Australian central bearded dragon (Pogona vitticeps). PMID:33082398
Comparative Study of Pine Reference Genomes Reveals Transposable Element Interconnected Gene Networks. PMID:33081418
Importance of microRNAs in Skin Oncogenesis and Their Suitability as Agents and Targets for Topical Therapy. PMID:33080592
Differential Expression of Maize and Teosinte microRNAs under Submergence, Drought, and Alternated Stress. PMID:33076374
EBV-encoded miRNAs can sensitize nasopharyngeal carcinoma to chemotherapeutic drugs by targeting BRCA1. PMID:33074587
circ2GO: A Database Linking Circular RNAs to Gene Function. PMID:33066523
A MicroRNA Expression Signature as Prognostic Marker for Oropharyngeal Squamous Cell Carcinoma. PMID:33057626
Tissue-specific and transcription-dependent mechanisms regulate primary microRNA processing efficiency of the human chromosome 19 MicroRNA cluster. PMID:33052778
Drugging the "undruggable" microRNAs. PMID:33052435
Computational Identification and Comparative Analysis of Conserved miRNAs and Their Putative Target Genes in the Juglans regia and J. microcarpa Genomes. PMID:33050178
Sex Differences in Cancer Cachexia. PMID:33044689
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals. PMID:33037820
Dysregulated Bone Metabolism Is Related to High Expression of miR-151a-3p in Severe Adolescent Idiopathic Scoliosis. PMID:33029507
Mechanistic Actions of microRNAs in Diabetic Wound Healing. PMID:33023156
miRNAs Predicted to Regulate Host Anti-viral Gene Pathways in IPNV-Challenged Atlantic Salmon Fry Are Affected by Viral Load, and Associated With the Major IPN Resistance QTL Genotypes in Late Infection. PMID:33013890
cncRNAdb: a manually curated resource of experimentally supported RNAs with both protein-coding and noncoding function. PMID:33010163
Hsa-miRNA-23a-3p promotes atherogenesis in a novel mouse model of atherosclerosis. PMID:33008925
Aberration of the modulatory functions of intronic microRNA hsa-miR-933 on its host gene ATF2 results in type II diabetes mellitus and neurodegenerative disease development. PMID:32993798
Transcriptome and Gene Fusion Analysis of Synchronous Lesions Reveals lncMRPS31P5 as a Novel Transcript Involved in Colorectal Cancer. PMID:32992457
Quantitative and time-resolved miRNA pattern of early human T cell activation. PMID:32990751
miRNASNP-v3: a comprehensive database for SNPs and disease-related variations in miRNAs and miRNA targets. PMID:32990748
High-Throughput Amenable MALDI-MS Detection of RNA and DNA with On-Surface Analyte Enrichment Using Fluorous Partitioning. PMID:32988284
MicroRNA: Another Pharmacological Avenue for Colorectal Cancer? PMID:32984321
Potential role of cellular miRNAs in coronavirus-host interplay. PMID:32983652
LncMirNet: Predicting LncRNA-miRNA Interaction Based on Deep Learning of Ribonucleic Acid Sequences. PMID:32977679
Analysis of G-quadruplexes upstream of herpesvirus miRNAs: evidence of G-quadruplex mediated regulation of KSHV miR-K12-1-9,11 cluster and HCMV miR-US33. PMID:32972365
Circulating microRNAs and their role in the immune response in triple-negative breast cancer. PMID:32968446
SIRT1 Gene SNP rs932658 Is Associated With Medication-Related Osteonecrosis of the Jaw. PMID:32967053
Review on the Computational Genome Annotation of Sequences Obtained by Next-Generation Sequencing. PMID:32962098
A panel of 8 miRNAs as a novel diagnostic biomarker in pancreatic cancer. PMID:32957376
microRNA strand selection: Unwinding the rules. PMID:32954644
Endogenous activated small interfering RNAs in virus-infected Brassicaceae crops show a common host gene-silencing pattern affecting photosynthesis and stress response. PMID:32945560
Small RNA deep sequencing reveals novel miRNAs in peripheral blood mononuclear cells from patients with IgA nephropathy. PMID:32945407
One locus with two roles: microRNA-independent functions of microRNA-host-gene locus-encoded long noncoding RNAs. PMID:32945142
Developmental stage-specific A-to-I editing pattern in the postnatal pineal gland of pigs (Sus scrofa). PMID:32944232
Stumbling on elusive cargo: how isomiRs challenge microRNA detection and quantification, the case of extracellular vesicles. PMID:32944171
Predictive value and changes of miR-34a after concurrent chemoradiotherapy and its association with cognitive function in patients with nasopharyngeal carcinoma. PMID:32934703
Dynamic mRNP Remodeling in Response to Internal and External Stimuli. PMID:32932892
Genome-Wide Screening and Characterization of Non-Coding RNAs in Coffea canephora. PMID:32932872
Exosomal miRNAs as Potential Diagnostic Biomarkers in Alzheimer's Disease. PMID:32932746
RNA Drugs and RNA Targets for Small Molecules: Principles, Progress, and Challenges. PMID:32929000
More than a Genetic Code: Epigenetics of Lung Fibrosis. PMID:32926347
MicroRNA regulation of vascular function. PMID:32923952
Premeiotic, 24-Nucleotide Reproductive PhasiRNAs Are Abundant in Anthers of Wheat and Barley But Not Rice and Maize. PMID:32917771
NEMPD: a network embedding-based method for predicting miRNA-disease associations by preserving behavior and attribute information. PMID:32912137
Identification of Biomarkers to Construct a Competing Endogenous RNA Network and Establishment of a Genomic-Clinicopathologic Nomogram to Predict Survival for Children with Rhabdoid Tumors of the Kidney. PMID:32908900
MicroRNAs and obesity-induced endothelial dysfunction: key paradigms in molecular therapy. PMID:32907629
Panomicon: A web-based environment for interactive, visual analysis of multi-omics data. PMID:32904262
How bioinformatics resources work with G4 RNAs. PMID:32898859
On the expanding roles of tRNA fragments in modulating cell behavior. PMID:32890397
Non-Coding RNA Databases in Cardiovascular Research. PMID:32887511
Genome-wide association study identifies candidate markers related to lincRNAs associated with male infertility in the Greek population. PMID:32880781
Transcription Profile and Genomic Variations of Oryctes Rhinoceros Nudivirus in Coconut Rhinoceros Beetles. PMID:32878889
Long Non-Coding RNAs in Liver Cancer and Nonalcoholic Steatohepatitis. PMID:32872482
Computational Methods and Software Tools for Functional Analysis of miRNA Data. PMID:32872205
Cross-Kingdom Regulation by Plant microRNAs Provides Novel Insight into Gene Regulation. PMID:32862223
Bioinformatics Analysis Revealed Novel 3'UTR Variants Associated with Intellectual Disability. PMID:32858868
miR-205: A Potential Biomedicine for Cancer Therapy. PMID:32854238
Roles of microRNAs in Ovarian Cancer Tumorigenesis: Two Decades Later, What Have We Learned? PMID:32850313
Differential Regulation of miRNA Profiles of Human Cells Experimentally Infected by Leishmania donovani Isolated From Indian Visceral Leishmaniasis and Post-Kala-Azar Dermal Leishmaniasis. PMID:32849363
Dysregulation of microRNA in cholangiocarcinoma identified through a meta-analysis of microRNA profiling. PMID:32848339
Improved reference genome of the arboviral vector Aedes albopictus. PMID:32847630
Viral Vectors Applied for RNAi-Based Antiviral Therapy. PMID:32842491
MNDR v3.0: mammal ncRNA-disease repository with increased coverage and annotation. PMID:32833025
Homology modeling and molecular dynamics based insights into Chalcone synthase and Chalcone isomerase in Phyllanthus emblica L. PMID:32832333
Identification of microRNAs Targeting the Transporter Associated with Antigen Processing TAP1 in Melanoma. PMID:32825219
Computational Identification and Characterization of New microRNAs in Human Platelets Stored in a Blood Bank. PMID:32806499
Tissue microRNA expression profiling in hepatic and pulmonary metastatic melanoma. PMID:32804708
Identification of a Functional Small Noncoding RNA of African Swine Fever Virus. PMID:32796064
Identification and characterization of miRNAs during early pregnancy in domestic sheep. PMID:32794198
miRNA-based biomarkers, therapies, and resistance in Cancer. PMID:32792861
hsa-microRNA-411-5p regulates proliferation, migration and invasion by targeting the hyaluronan mediated motility receptor in ovarian cancer. PMID:32782498
Overexpression of miR-669m inhibits erythroblast differentiation. PMID:32782283
Global cataloguing of variations in untranslated regions of viral genome and prediction of key host RNA binding protein-microRNA interactions modulating genome stability in SARS-CoV-2. PMID:32780783
Lack of TLR4 modifies the miRNAs profile and attenuates inflammatory signaling pathways. PMID:32780740
The roles of microRNA in redox metabolism and exercise-mediated adaptation. PMID:32780693
Identification of C3 as a therapeutic target for diabetic nephropathy by bioinformatics analysis. PMID:32778679
Principles and innovative technologies for decrypting noncoding RNAs: from discovery and functional prediction to clinical application. PMID:32778133
Predictive features of gene expression variation reveal mechanistic link with differential expression. PMID:32767663
The miRNA-mRNA interactome of murine induced pluripotent stem cell-derived chondrocytes in response to inflammatory cytokines. PMID:32767602
Epigenetic Regulator miRNA Pattern Differences Among SARS-CoV, SARS-CoV-2, and SARS-CoV-2 World-Wide Isolates Delineated the Mystery Behind the Epic Pathogenicity and Distinct Clinical Characteristics of Pandemic COVID-19. PMID:32765592
Nicotine Changes the microRNA Profile to Regulate the FOXO Memory Program of CD8+ T Cells in Rheumatoid Arthritis. PMID:32765511
Multifunctional Roles of miR-34a in Cancer: A Review with the Emphasis on Head and Neck Squamous Cell Carcinoma and Thyroid Cancer with Clinical Implications. PMID:32764498
Exploiting somatic piRNAs in Bemisia tabaci enables novel gene silencing through RNA feeding. PMID:32764103
Identification of epigenetic interactions between microRNA and DNA methylation associated with polycystic ovarian syndrome. PMID:32759991
Bioinformatics analysis of microRNA profiles and identification of microRNA-mRNA network and biological markers in intracranial aneurysm. PMID:32756097
SARS-CoV-2 may regulate cellular responses through depletion of specific host miRNAs. PMID:32755307
The clinical impact of intra- and extracellular miRNAs in ovarian cancer. PMID:32750177
Guidelines for human gene nomenclature. PMID:32747822
MicroRNAs and Apoptosis in Colorectal Cancer. PMID:32731413
Analysis of conserved miRNAs in cynomolgus macaque genome using small RNA sequencing and homology searching. PMID:32728489
Integrative analysis of miRNA and mRNA sequencing data reveals potential regulatory mechanisms of ACE2 and TMPRSS2. PMID:32726325
miRNA Regulation of T Cells in Islet Autoimmunity and Type 1 Diabetes. PMID:32725277
The Role of microRNAs in Organismal and Skin Aging. PMID:32722415
MicroRNAs and Their Targetomes in Tumor-Immune Communication. PMID:32722019
MicroRNA signatures of perioperative myocardial injury after elective noncardiac surgery: a prospective observational mechanistic cohort study. PMID:32718726
Chemically Induced Hypoxia Enhances miRNA Functions in Breast Cancer. PMID:32707933
Conserved Genomic Terminals of SARS-CoV-2 as Co-evolving Functional Elements and Potential Therapeutic Targets. PMID:32676601
Research Tools for the Functional Genomics of Plant miRNAs During Zygotic and Somatic Embryogenesis. PMID:32674459
Deep Sequencing of Small RNAs from Neurosurgical Extracellular Vesicles Substantiates miR-486-3p as a Circulating Biomarker that Distinguishes Glioblastoma from Lower-Grade Astrocytoma Patients. PMID:32668808
Approaching Sex Differences in Cardiovascular Non-Coding RNA Research. PMID:32664454
MicroRNA Regulatory Pathways in the Control of the Actin-Myosin Cytoskeleton. PMID:32660059
High-Throughput Sequencing-Based Identification of Arabidopsis miRNAs Induced by Phytophthora capsici Infection. PMID:32655510
A Brief Survey for MicroRNA Precursor Identification Using Machine Learning Methods. PMID:32655294
Enhancer Function of MicroRNA-3681 Derived from Long Terminal Repeats Represses the Activity of Variable Number Tandem Repeats in the 3' UTR of SHISA7. PMID:32655015
Non-Coding RNA Editing in Cancer Pathogenesis. PMID:32650588
Exploring the Molecular Mechanisms of Pterygium by Constructing lncRNA-miRNA-mRNA Regulatory Network. PMID:32645133
Transcriptomic and biochemical investigations support the role of rootstock-scion interaction in grapevine berry quality. PMID:32641089
Bioinformatics Analysis of Evolution and Human Disease Related Transposable Element-Derived microRNAs. PMID:32630504
Frequency of MicroRNA Response Elements Identifies Pathologically Relevant Signaling Pathways in Triple-Negative Breast Cancer. PMID:32629614
Interplay of EMT and CSC in Cancer and the Potential Therapeutic Strategies. PMID:32625096
MicroRNAs alteration as early biomarkers for cancer and neurodegenerative diseases: New challenges in pesticides exposure. PMID:32612936
miRNAs involved in transcriptome remodeling during pollen development and heat stress response in Solanum lycopersicum. PMID:32612181
Identification of Ovarian Circular RNAs and Differential Expression Analysis between MeiShan and Large White Pigs. PMID:32610571
MicroRNA dilution during oocyte growth disables the microRNA pathway in mammalian oocytes. PMID:32609824
ETMR: a tumor entity in its infancy. PMID:32601913
Genome-wide identification and integrated analysis of lncRNAs in rice backcross introgression lines (BC2F12). PMID:32600330
Pervasive Selection against MicroRNA Target Sites in Human Populations. PMID:32585012
Identification of Known and Novel MicroRNAs in Raspberry Organs Through High-Throughput Sequencing. PMID:32582255
MicroRNA Biomarkers for Infectious Diseases: From Basic Research to Biosensing. PMID:32582115
Learning Representations to Predict Intermolecular Interactions on Large-Scale Heterogeneous Molecular Association Network. PMID:32580123
microRNAs targeting cellular cholesterol: implications for combating anticancer drug resistance. PMID:32577155
MicroRNA and ROS Crosstalk in Cardiac and Pulmonary Diseases. PMID:32575472
Genome-wide profiling of host-encoded circular RNAs highlights their potential role during the Japanese encephalitis virus-induced neuroinflammatory response. PMID:32552669
MicroRNA Alterations in a Tg501 Mouse Model of Prion Disease. PMID:32549330
MicroRNAs as regulators of brain function and targets for treatment of epilepsy. PMID:32546757
Rewired functional regulatory networks among miRNA isoforms (isomiRs) from let-7 and miR-10 gene families in cancer. PMID:32542110
Bioentity2vec: Attribute- and behavior-driven representation for predicting multi-type relationships between bioentities. PMID:32533701
Multi-branch Convolutional Neural Network for Identification of Small Non-coding RNA genomic loci. PMID:32528107
Reveal the Regulation Patterns of Prognosis-Related miRNAs and lncRNAs Across Solid Tumors in the Cancer Genome Atlas. PMID:32523951
Extracellular Vesicle-Contained microRNA of C. elegans as a Tool to Decipher the Molecular Basis of Nematode Parasitism. PMID:32523895
Non-Coding RNA: Role in Gestational Diabetes Pathophysiology and Complications. PMID:32512799
LuluDB-The Database Created Based on Small RNA, Transcriptome, and Degradome Sequencing Shows the Wide Landscape of Non-coding and Coding RNA in Yellow Lupine (Lupinus luteus L.) Flowers and Pods. PMID:32499815
High-Resolution In Vivo Identification of miRNA Targets by Halo-Enhanced Ago2 Pull-Down. PMID:32497496
A low-bias and sensitive small RNA library preparation method using randomized splint ligation. PMID:32496547
TNF-alpha-induced microglia activation requires miR-342: impact on NF-kB signaling and neurotoxicity. PMID:32488063
Identification of genes and miRNA associated with idiopathic recurrent pregnancy loss: an exploratory data mining study. PMID:32487076
mirnaQC: a webserver for comparative quality control of miRNA-seq data. PMID:32484556
miRNet 2.0: network-based visual analytics for miRNA functional analysis and systems biology. PMID:32484539
Molecular signature of eutopic endometrium in endometriosis based on the multi-omics integrative synthesis. PMID:32474803
Genome-wide miRNA profiling in plasma of pregnant women with down syndrome fetuses. PMID:32472298
MicroRNA-934 is a novel primate-specific small non-coding RNA with neurogenic function during early development. PMID:32459171
miRactDB characterizes miRNA-gene relation switch between normal and cancer tissues across pan-cancer. PMID:32436932
Seminal Plasma-Derived Extracellular-Vesicle Fractions from HIV-Infected Men Exhibit Unique MicroRNA Signatures and Induce a Proinflammatory Response in Cells Isolated from the Female Reproductive Tract. PMID:32434889
Clues of in vivo nuclear gene regulation by mitochondrial short non-coding RNAs. PMID:32427953
NF90 modulates processing of a subset of human pri-miRNAs. PMID:32427329
The predictive potential of circulating microRNA for future cardiovascular events. PMID:32421764
Progress, Challenges, and Surprises in Annotating the Human Genome. PMID:32421357
Gene Ontology Curation of Neuroinflammation Biology Improves the Interpretation of Alzheimer's Disease Gene Expression Data. PMID:32417785
Complex Analysis of Retroposed Genes' Contribution to Human Genome, Proteome and Transcriptome. PMID:32408516
Modeling neuronal consequences of autism-associated gene regulatory variants with human induced pluripotent stem cells. PMID:32398033
Interaction of miR-181b and IFNA1 Polymorphisms on the Risk of Systemic Lupus Erythematosus. PMID:32382553
miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems. PMID:32374865
Comparative analysis of similarity measurements in miRNAs with applications to miRNA-disease association predictions. PMID:32366225
miRSwitch: detecting microRNA arm shift and switch events. PMID:32356893
ABC Efflux Transporters and the Circuitry of miRNAs: Kinetics of Expression in Cancer Drug Resistance. PMID:32340269
Meta-Analysis of the Potential Role of miRNA-21 in Cardiovascular System Function Monitoring. PMID:32337248
Linc-ROR promotes the progression of breast cancer and decreases the sensitivity to rapamycin through miR-194-3p targeting MECP2. PMID:32335998
Efficient Mutagenesis of Marek's Disease Virus-Encoded microRNAs Using a CRISPR/Cas9-Based Gene Editing System. PMID:32325942
Screening of differentially expressed miRNAs in tensile strain‑treated HepG2 cells by miRNA microarray analysis. PMID:32323778
A Tetra-Panel of Serum Circulating miRNAs for the Diagnosis of the Four Most Prevalent Tumor Types. PMID:32316350
Predicting miRNA-disease association from heterogeneous information network with GraRep embedding model. PMID:32313121
Pervasive Small RNAs in Cardiometabolic Research: Great Potential Accompanied by Biological and Technical Barriers. PMID:32312897
MicroRNA Networks in Pancreatic Islet Cells: Normal Function and Type 2 Diabetes. PMID:32312896
Exploiting Circulating MicroRNAs as Biomarkers in Psychiatric Disorders. PMID:32304043
Ischaemic post-conditioning in rats: Responder and non-responder differ in transcriptome of mitochondrial proteins. PMID:32297702
The Interaction Between lncRNA SNHG6 and hnRNPA1 Contributes to the Growth of Colorectal Cancer by Enhancing Aerobic Glycolysis Through the Regulation of Alternative Splicing of PKM. PMID:32296635
The circFASN/miR-33a pathway participates in tacrolimus-induced dysregulation of hepatic triglyceride homeostasis. PMID:32296037
miR-206 family is important for mitochondrial and muscle function, but not essential for myogenesis in vitro. PMID:32277852
miR-26a-5p Inhibit Gastric Cancer Cell Proliferation and Invasion Through Mediated Wnt5a. PMID:32273724
A Collection of Pre-mRNA Splicing Mutants in Arabidopsis thaliana. PMID:32265287
Identification of Differentially Expressed MicroRNAs and Their Potential Target Genes in Adipose Tissue from Pigs with Highly Divergent Backfat Thickness. PMID:32260506
Small Non-Coding RNA Profiling Identifies miR-181a-5p as a Mediator of Estrogen Receptor Beta-Induced Inhibition of Cholesterol Biosynthesis in Triple-Negative Breast Cancer. PMID:32260128
The miR-582/CD1B Axis Is Involved in Regulation of Dendritic Cells and Is Associated with Clinical Outcomes in Advanced Lung Adenocarcinoma. PMID:32258122
Role of exosomes and exosomal microRNAs in cancer. PMID:32257377
Extracellular vesicular microRNAs as potential biomarker for early detection of doxorubicin-induced cardiotoxicity. PMID:32255536
Cardiac miRNA Expression and their mRNA Targets in a Rat Model of Prediabetes. PMID:32244869
An Intergenic rs9275596 Polymorphism on Chr. 6p21 Is Associated with Multiple Sclerosis in Latvians. PMID:32244438
MeSHHeading2vec: a new method for representing MeSH headings as vectors based on graph embedding algorithm. PMID:32232320
Targeting mir128-3p alleviates myocardial insulin resistance and prevents ischemia-induced heart failure. PMID:32223896
Non-coding RNA therapeutics for cardiac regeneration. PMID:32215566
Exosomal noncoding RNAs in Glioma: biological functions and potential clinical applications. PMID:32213181
MicroRNA Involvement in Signaling Pathways During Viral Infection. PMID:32211411
Secreted microRNA data from the parasitic filarial nematode Acanthocheilonema viteae. PMID:32181299
ncRNAs: New Players in Mitochondrial Health and Disease? PMID:32180794
Integrated annotations and analyses of small RNA-producing loci from 47 diverse plants. PMID:32179590
Temporal responses of conserved miRNAs to drought and their associations with drought tolerance and productivity in rice. PMID:32171232
A learning based framework for diverse biomolecule relationship prediction in molecular association network. PMID:32170157
MicroRNAs expressed by human cytomegalovirus. PMID:32164742
Small extracellular vesicles deliver miR-21 and miR-217 as pro-senescence effectors to endothelial cells. PMID:32158519
MicroRNA-mRNA networks define translatable molecular outcome phenotypes in osteosarcoma. PMID:32157112
ncRNAs in Type-2 Immunity. PMID:32155783
Angiotensin-(1-9) prevents cardiomyocyte hypertrophy by controlling mitochondrial dynamics via miR-129-3p/PKIA pathway. PMID:32152556
Reconstruction of a lncRNA-Associated ceRNA Network in Endothelial Cells under Circumferential Stress. PMID:32148949
Biomarkers for the Noninvasive Diagnosis of Endometriosis: State of the Art and Future Perspectives. PMID:32143439
MiR&moRe2: A Bioinformatics Tool to Characterize microRNAs and microRNA-Offset RNAs from Small RNA-Seq Data. PMID:32143373
First Report of Aleurocanthus spiniferus on Ailanthus altissima: Profiling of the Insect Microbiome and MicroRNAs. PMID:32138145
Evolution of PHAS loci in the young spike of Allohexaploid wheat. PMID:32131726
ncRPheno: a comprehensive database platform for identification and validation of disease related noncoding RNAs. PMID:32122231
Molecular Evolution and Diversification of Proteins Involved in miRNA Maturation Pathway. PMID:32121542
Human megakaryocytic microparticles induce de novo platelet biogenesis in a wild-type murine model. PMID:32119736
The Transcriptome of Pig Spermatozoa, and Its Role in Fertility. PMID:32106598
Nanoparticle-Based Delivery of Tumor Suppressor microRNA for Cancer Therapy. PMID:32102476
Transcriptome-wide identification and profiling of miRNAs in a stress-tolerant conifer Sabina chinensis. PMID:32098920
Marek's disease vaccines-induced differential expression of known and novel microRNAs in primary lymphoid organ bursae of White Leghorn. PMID:32093775
A guide to naming human non-coding RNA genes. PMID:32090359
Pan-cancer analysis reveals cooperativity of both strands of microRNA that regulate tumorigenesis and patient survival. PMID:32080184
Arabidopsis RNA Polymerase IV generates 21-22 nucleotide small RNAs that can participate in RNA-directed DNA methylation and may regulate genes. PMID:32075560
Uric acid induced hepatocytes lipid accumulation through regulation of miR-149-5p/FGF21 axis. PMID:32070295
Leptin-Responsive MiR-4443 Is a Small Regulatory RNA Independent of the Canonic MicroRNA Biogenesis Pathway. PMID:32069948
Emergence of Circulating MicroRNAs in Breast Cancer as Diagnostic and Therapeutic Efficacy Biomarkers. PMID:32067191
A Post-Processing Algorithm for miRNA Microarray Data. PMID:32059403
Reviewing the Limitations of Adult Mammalian Cardiac Regeneration: Noncoding RNAs as Regulators of Cardiomyogenesis. PMID:32050588
Brain microRNAs associated with late-life depressive symptoms are also associated with cognitive trajectory and dementia. PMID:32047652
MicroRNA-183 in Cancer Progression. PMID:32047538
miR-125b and miR-223 Contribute to Inflammation by Targeting the Key Molecules of NFκB Pathway. PMID:32039213
Transgenerational Effects of Water-Deficit and Heat Stress on Germination and Seedling Vigour-New Insights from Durum Wheat microRNAs. PMID:32033017
Imprinted Maternally Expressed microRNAs Antagonize Paternally Driven Gene Programs in Neurons. PMID:32032531
Estimating the power of sequence covariation for detecting conserved RNA structure. PMID:32031582
MicroRNA gga-miR-200a-3p modulates immune response via MAPK signaling pathway in chicken afflicted with necrotic enteritis. PMID:32014061
Environmental Influencers, MicroRNA, and Multiple Sclerosis. PMID:32009827
Unveiling ncRNA regulatory axes in atherosclerosis progression. PMID:32009226
miRgo: integrating various off-the-shelf tools for identification of microRNA-target interactions by heterogeneous features and a novel evaluation indicator. PMID:32001758
Identification and Characterization of circRNAs Responsive to Methyl Jasmonate in Arabidopsis thaliana. PMID:31991793
Novel miRNA identification and comparative profiling of miRNA regulations revealed important pathways in Jinding duck ovaries by small RNA sequencing. PMID:31988832
tRNA-derived fragments and microRNAs in the maternal-fetal interface of a mouse maternal-immune-activation autism model. PMID:31983265
miRNAs and lncRNAs in Echinococcus and Echinococcosis. PMID:31979099
High Mobility Group A (HMGA): Chromatin Nodes Controlled by a Knotty miRNA Network. PMID:31979076
A novel computational approach to the silencing of Sugarcane Bacilliform Guadeloupe A Virus determines potential host-derived MicroRNAs in sugarcane (Saccharum officinarum L.). PMID:31976180
Intragenic MicroRNAs Autoregulate Their Host Genes in Both Direct and Indirect Ways-A Cross-Species Analysis. PMID:31963421
miRNAs as Influencers of Cell-Cell Communication in Tumor Microenvironment. PMID:31952362
Clinical and functional significance of circular RNAs in cytogenetically normal AML. PMID:31945158
PAREameters: a tool for computational inference of plant miRNA-mRNA targeting rules using small RNA and degradome sequencing data. PMID:31943065
Circulating miR-141 and miR-375 are associated with treatment outcome in metastatic castration resistant prostate cancer. PMID:31937854
Impact of long-term storage and freeze-thawing on eight circulating microRNAs in plasma samples. PMID:31935258
FilTar: using RNA-Seq data to improve microRNA target prediction accuracy in animals. PMID:31930382
Integrative Construction and Analysis of Molecular Association Network in Human Cells by Fusing Node Attribute and Behavior Information. PMID:31923739
Unraveling the Molecular Signature of Extracellular Vesicles From Endometrial-Derived Mesenchymal Stem Cells: Potential Modulatory Effects and Therapeutic Applications. PMID:31921832
RNAInter in 2020: RNA interactome repository with increased coverage and annotation. PMID:31906603
Comparative and Functional Genomic Resource for Mechanistic Studies of Human Blood Pressure-Associated Single Nucleotide Polymorphisms. PMID:31902252
Fast and accurate microRNA search using CNN. PMID:31881831
An Emerging Role for isomiRs and the microRNA Epitranscriptome in Neovascularization. PMID:31881725
Identification of circulating microRNA signatures as potential biomarkers in the serum of elk infected with chronic wasting disease. PMID:31873177
Unraveling the Role of MicroRNAs in Mycobacterium tuberculosis Infection and Disease: Advances and Pitfalls. PMID:31871103
Editorial focus: understanding off-target effects as the key to successful RNAi therapy. PMID:31867046
MiRNA-disease interaction prediction based on kernel neighborhood similarity and multi-network bidirectional propagation. PMID:31865912
MicroRNA-Based Combinatorial Cancer Therapy: Effects of MicroRNAs on the Efficacy of Anti-Cancer Therapies. PMID:31861937
Knowledge Base Commons (KBCommons) v1.1: a universal framework for multi-omics data integration and biological discoveries. PMID:31856718
Epigenetic Regulation of miRNA Expression in Malignant Mesothelioma: miRNAs as Biomarkers of Early Diagnosis and Therapy. PMID:31850200
A Bioinformatics Approach to Explore MicroRNAs as Tools to Bridge Pathways Between Plants and Animals. Is DNA Damage Response (DDR) a Potential Target Process? PMID:31850028
An Online Database for Exploring Over 2,000 Arabidopsis Small RNA Libraries. PMID:31843802
Identification of microRNAs in skeletal muscle associated with lung cancer cachexia. PMID:31828982
The green peach aphid gut contains host plant microRNAs identified by comprehensive annotation of Brassica oleracea small RNA data. PMID:31827121
The Non-Canonical Aspects of MicroRNAs: Many Roads to Gene Regulation. PMID:31752361
DIANA-LncBase v3: indexing experimentally supported miRNA targets on non-coding transcripts. PMID:31732741
The Role of Non-coding RNAs in Oncology. PMID:31730848
Pharmacologic epigenetic modulators of alkaline phosphatase in chronic kidney disease. PMID:31725015
MicroRNAs: potential targets and agents of endocrine disruption in female reproduction. PMID:31719748
Secondary Structural Model of Human MALAT1 Reveals Multiple Structure-Function Relationships. PMID:31717552
Characterization of novel primary miRNA transcription units in human cells using Bru-seq nascent RNA sequencing. PMID:31709421
The Regulatory Roles of Non-coding RNAs in Angiogenesis and Neovascularization From an Epigenetic Perspective. PMID:31709179
miRPathDB 2.0: a novel release of the miRNA Pathway Dictionary Database. PMID:31691816
The Role of MicroRNAs in Diabetes-Related Oxidative Stress. PMID:31683538
Jasmine: a Java pipeline for isomiR characterization in miRNA-Seq Data. PMID:31681943
Circulating miRNAs, Small but Promising Biomarkers for Autism Spectrum Disorder. PMID:31680857
Plant Reactome: a knowledgebase and resource for comparative pathway analysis. PMID:31680153
A panel of miRNAs derived from plasma extracellular vesicles as novel diagnostic biomarkers of lung adenocarcinoma. PMID:31677346
NPInter v4.0: an integrated database of ncRNA interactions. PMID:31670377
SIGNOR 2.0, the SIGnaling Network Open Resource 2.0: 2019 update. PMID:31665520
Deep Small RNA Sequencing of BRAF V600E Mutated Papillary Thyroid Carcinoma With Lymph Node Metastasis. PMID:31649724
ncRNA2MetS: a manually curated database for non-coding RNAs associated with metabolic syndrome. PMID:31637139
MicroRNA-411 and Its 5'-IsomiR Have Distinct Targets and Functions and Are Differentially Regulated in the Vasculature under Ischemia. PMID:31636041
Characterization of Functionally Associated miRNAs in Glioblastoma and their Engineering into Artificial Clusters for Gene Therapy. PMID:31633695
A Computational Model to Predict the Causal miRNAs for Diseases. PMID:31632446
Roles of microRNAs as non-invasive biomarker and therapeutic target in colorectal cancer. PMID:31617575
Evidences from a Systematic Review and Meta-Analysis Unveil the Role of MiRNA Polymorphisms in the Predisposition to Female Neoplasms. PMID:31615040
Host Plant-Derived miRNAs Potentially Modulate the Development of a Cosmopolitan Insect Pest, Plutella xylostella. PMID:31614786
Current Evidence on Potential Uses of MicroRNA Biomarkers for Migraine: From Diagnosis to Treatment. PMID:31612314
The Importance of microRNAs in RAS Oncogenic Activation in Human Cancer. PMID:31612113
RumimiR: a detailed microRNA database focused on ruminant species. PMID:31608376
PmiREN: a comprehensive encyclopedia of plant miRNAs. PMID:31602478
VISDB: a manually curated database of viral integration sites in the human genome. PMID:31598702
MirGeneDB 2.0: the metazoan microRNA complement. PMID:31598695
Nonendocrine mechanisms of sex bias in rheumatic diseases. PMID:31597952
The Regulatory Role of MicroRNAs in Breast Cancer. PMID:31590453
Transforming Growth Factor-β1 Selectively Recruits microRNAs to the RNA-Induced Silencing Complex and Degrades CFTR mRNA under Permissive Conditions in Human Bronchial Epithelial Cells. PMID:31590401
Selection of miRNA reference genes for plant defence studies in rice (Oryza sativa). PMID:31583464
Angiogenin generates specific stress-induced tRNA halves and is not involved in tRF-3-mediated gene silencing. PMID:31582561
MicroRNA Dynamics and Functions During Arabidopsis Embryogenesis. PMID:31562217
TLR4-RelA-miR-30a signal pathway regulates Th17 differentiation during experimental autoimmune encephalomyelitis development. PMID:31561751
Translating neural stem cells to neurons in the mammalian brain. PMID:31551564
Organ-specific small non-coding RNA responses in domestic (Sudani) ducks experimentally infected with highly pathogenic avian influenza virus (H5N1). PMID:31538530
MicroRNAs in Ocular Infection. PMID:31533211
MicroRNA Mediated Changes in Drug Metabolism and Target Gene Expression by Efavirenz and Rifampicin In Vitro: Clinical Implications. PMID:31526233
miRDB: an online database for prediction of functional microRNA targets. PMID:31504780
Roles of Small RNAs in Virus-Plant Interactions. PMID:31491987
Selecting Essential MicroRNAs Using a Novel Voting Method. PMID:31479921
Atropa belladonna Expresses a microRNA (aba-miRNA-9497) Highly Homologous to Homo sapiens miRNA-378 (hsa-miRNA-378); both miRNAs target the 3'-Untranslated Region (3'-UTR) of the mRNA Encoding the Neurologically Relevant, Zinc-Finger Transcription Factor ZNF-691. PMID:31456135
Prediction of Disease-related microRNAs through Integrating Attributes of microRNA Nodes and Multiple Kinds of Connecting Edges. PMID:31455026
Ularcirc: visualization and enhanced analysis of circular RNAs via back and canonical forward splicing. PMID:31435647
microRNA mir-598-3p mediates susceptibility to stress enhancement of remote fear memory. PMID:31416909
Construction and Comprehensive Analysis of a Molecular Association Network via lncRNA-miRNA -Disease-Drug-Protein Graph. PMID:31405040
Remodeling of the Caenorhabditis elegans non-coding RNA transcriptome by heat shock. PMID:31396626
Biology and Function of miR159 in Plants. PMID:31366066
Prediction and interpretation of miRNA-disease associations based on miRNA target genes using canonical correlation analysis. PMID:31345171
Identification and Interaction Analysis of Significant Genes and MicroRNAs in Pterygium. PMID:31341891
Short RNA regulators: the past, the present, the future, and implications for precision medicine and health disparities. PMID:31323485
The analysis of miRNA expression profiling datasets reveals inverse microRNA patterns in glioblastoma and Alzheimer's disease. PMID:31322245
Non-Coding RNAs and their Integrated Networks. PMID:31301674
Integrated Computational Analysis Highlights unique miRNA Signatures in the Subventricular Zone and Striatum of GM2 Gangliosidosis Animal Models. PMID:31261761
HDAC2-dependent miRNA signature in acute myeloid leukemia. PMID:31254352
miRBaseMiner, a tool for investigating miRBase content. PMID:31251108
Plasma microRNA Levels Combined with CEA and CA19-9 in the Follow-Up of Colorectal Cancer Patients. PMID:31234350
Identification and Characterization of microRNAs and Their Predicted Functions in Biomineralization in the Pearl Oyster (Pinctada fucata). PMID:31212990
Can Epigenetics of Endothelial Dysfunction Represent the Key to Precision Medicine in Type 2 Diabetes Mellitus? PMID:31212911
Roles of E-cadherin and Noncoding RNAs in the Epithelial-mesenchymal Transition and Progression in Gastric Cancer. PMID:31212809
Refinement of breast cancer molecular classification by miRNA expression profiles. PMID:31208318
Challenges in microRNAs' targetome prediction and validation. PMID:31169173
Circulating miRNAs as Biomarkers for Endometriosis and Endometriosis-Related Ovarian Cancer-An Overview. PMID:31126056
sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression. PMID:31114926
Exploration of prognosis-related microRNA and transcription factor co-regulatory networks across cancer types. PMID:31046554
MicroRNAs in Neuroinflammation: Implications in Disease Pathogenesis, Biomarker Discovery and Therapeutic Applications. PMID:31022830
Celebrating 25 Years of MicroRNA Research: From Discovery to Clinical Application. PMID:31018550
Non-Coding RNAs as New Therapeutic Targets in the Context of Renal Fibrosis. PMID:31018516
Interplay Between ncRNAs and Cellular Communication: A Proposal for Understanding Cell-Specific Signaling Pathways. PMID:31001323
Integrative roles of microRNAs in lipid metabolism and dyslipidemia. PMID:30985366
The sncRNA Zoo: a repository for circulating small noncoding RNAs in animals. PMID:30937442
The Interplay between miRNA-Related Variants and Age-Related Macular Degeneration: EVIDENCE of Association of MIR146A and MIR27A. PMID:30934838
Infrastructures of systems biology that facilitate functional genomic study in rice. PMID:30874968
An estimate of the total number of true human miRNAs. PMID:30820533
Intrusive Growth of Phloem Fibers in Flax Stem: Integrated Analysis of miRNA and mRNA Expression Profiles. PMID:30791461
The Role of UV-B light on Small RNA Activity During Grapevine Berry Development. PMID:30647106
miRNA Targeting: Growing beyond the Seed. PMID:30638669
The 26th annual Nucleic Acids Research database issue and Molecular Biology Database Collection. PMID:30626175

The microRNA Registry PubMed citations: 932.

http://dx.doi.org/10.1093/nar/gky1141

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crowdsourcing
metasource: Fairsharing.org
version: FAIRsharing.org: miRBase; miRBase; DOI: https://doi.org/10.25504/FAIRsharing.hmgte8; Last edited: March 4, 2021, 2:57 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

gene
metasource: Fairsharing.org
version: FAIRsharing.org: miRBase; miRBase; DOI: https://doi.org/10.25504/FAIRsharing.hmgte8; Last edited: March 4, 2021, 2:57 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

micro rna
metasource: Fairsharing.org
version: FAIRsharing.org: miRBase; miRBase; DOI: https://doi.org/10.25504/FAIRsharing.hmgte8; Last edited: March 4, 2021, 2:57 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

rna sequence
metasource: Fairsharing.org
version: FAIRsharing.org: miRBase; miRBase; DOI: https://doi.org/10.25504/FAIRsharing.hmgte8; Last edited: March 4, 2021, 2:57 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

ribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: miRBase; miRBase; DOI: https://doi.org/10.25504/FAIRsharing.hmgte8; Last edited: March 4, 2021, 2:57 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

rna sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

arabidopsis
metasource: re3data.org
version: re3data.org: miRBase; editing status 2017-05-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30P5K last accessed: 2022-11-04

fly
metasource: re3data.org
version: re3data.org: miRBase; editing status 2017-05-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30P5K last accessed: 2022-11-04

human
metasource: re3data.org
version: re3data.org: miRBase; editing status 2017-05-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30P5K last accessed: 2022-11-04

microrna
metasource: re3data.org
version: re3data.org: miRBase; editing status 2017-05-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30P5K last accessed: 2022-11-04

mouse
metasource: re3data.org
version: re3data.org: miRBase; editing status 2017-05-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30P5K last accessed: 2022-11-04

nucleotides
metasource: re3data.org
version: re3data.org: miRBase; editing status 2017-05-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30P5K last accessed: 2022-11-04

worm
metasource: re3data.org
version: re3data.org: miRBase; editing status 2017-05-26; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R30P5K last accessed: 2022-11-04

functional, regulatory and non-coding rna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:59.904556

microarray experiment
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:59.904556

mapping
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:59.904556

gene transcripts
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:59.904556

rna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:59.904556

crowdsourcing gene micro rna rna sequence rna rna sequence arabidopsis fly human microrna mouse nucleotides worm functional, regulatory and non-coding rna microarray experiment mapping gene transcripts rna

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