Deep learning geometrical potential for high-accuracy ab initio protein structure prediction. 
 PMID:35663033
                                    
                                
                                    A Benchmark Dataset for Evaluating Practical Performance of Model Quality Assessment of Homology Models. 
 PMID:35324806
                                    
                                
                                    Predicted 3D model of the M protein of Porcine Epidemic Diarrhea Virus and analysis of its immunogenic potential. 
 PMID:35139120
                                    
                                
                                    Secondary structure specific simpler prediction models for protein backbone angles. 
 PMID:34983370
                                    
                                
                                    New system for archiving integrative structures. 
 PMID:34866606
                                    
                                
                                    The AlphaFold Database of Protein Structures: A Biologist's Guide. 
 PMID:34757056
                                    
                                
                                    Accurate prediction of protein torsion angles using evolutionary signatures and recurrent neural network. 
 PMID:34702851
                                    
                                
                                    COSMIC Cancer Gene Census 3D database: understanding the impacts of mutations on cancer targets. 
 PMID:34137435
                                    
                                
                                    Protein model accuracy estimation empowered by deep learning and inter-residue distance prediction in CASP14. 
 PMID:34035363
                                    
                                
                                    Deducing high-accuracy protein contact-maps from a triplet of coevolutionary matrices through deep residual convolutional networks. 
 PMID:33770072
                                    
                                
                                    Improved Protein Model Quality Assessment By Integrating Sequential And Pairwise Features Using Deep Learning. 
 PMID:33325480
                                    
                                
                                    Enhancing protein backbone angle prediction by using simpler models of deep neural networks. 
 PMID:33173130
                                    
                                
                                    Predicting binding sites from unbound versus bound protein structures. 
 PMID:32985584
                                    
                                
                                    Contributions of de novo variants to systemic lupus erythematosus. 
 PMID:32724065
                                    
                                
                                    Dark Proteome Database: Studies on Disorder. 
 PMID:32629790
                                    
                                
                                    Protein Contact Map Prediction Based on ResNet and DenseNet. 
 PMID:32337273
                                    
                                
                                    Machine Learning Approaches for Quality Assessment of Protein Structures. 
 PMID:32316682
                                    
                                
                                    Pathological, Morphological, Cytogenomic, Biochemical and Molecular Data Support the Distinction between Colletotrichum cigarro comb. et stat. nov. and Colletotrichum kahawae. 
 PMID:32295225
                                    
                                
                                    Immunoinformatics and Vaccine Development: An Overview. 
 PMID:32161726
                                    
                                
                                    Exploring the computational methods for protein-ligand binding site prediction. 
 PMID:32140203
                                    
                                
                                    SGID: a comprehensive and interactive database of the silkworm. 
 PMID:31836898
                                    
                                
                                    Molecular replacement using structure predictions from databases. 
 PMID:31793899
                                    
                                
                                    Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition). 
 PMID:31633216
                                    
                                
                                    The association between TNP2 gene polymorphisms and Iranian infertile men with varicocele: A case-control study. 
 PMID:31583373
                                    
                                
                                    Improved homology modeling of the human & rat EP4 prostanoid receptors. 
 PMID:31455205
                                    
                                
                                    I-TASSER gateway: A protein structure and function prediction server powered by XSEDE. 
 PMID:31427836
                                    
                                
                                    A Novel Pyrazolopyrimidine Ligand of Human PGK1 and Stress Sensor DJ1 Modulates the Shelterin Complex and Telomere Length Regulation. 
 PMID:31401411
                                    
                                
                                    Protein structure prediction using sparse NOE and RDC restraints with Rosetta in CASP13. 
 PMID:31292988
                                    
                                
                                    Arming oHSV with ULBP3 drives abscopal immunity in lymphocyte-depleted glioblastoma. 
 PMID:31292299
                                    
                                
                                    RNA-Seq analysis of soft rush (Juncus effusus): transcriptome sequencing, de novo assembly, annotation, and polymorphism identification. 
 PMID:31195970
                                    
                                
                                    The Selective Rat Toxicant Norbormide Blocks KATP Channels in Smooth Muscle Cells But Not in Insulin-Secreting Cells. 
 PMID:31191321
                                    
                                
                                    Principles for Integrative Structural Biology Studies. 
 PMID:31150619
                                    
                                
                                    Plasmodium pseudo-Tyrosine Kinase-like binds PP1 and SERA5 and is exported to host erythrocytes. 
 PMID:31148576
                                    
                                
                                    Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB). 
 PMID:30988261
                                    
                                
                                    Dark Proteome Database: Studies on Dark Proteins. 
 PMID:30934744
                                    
                                
                                    Anticipating innovations in structural biology. 
 PMID:30912485
                                    
                                
                                    Protein structure prediction. 
 PMID:30853739
                                    
                                
                                    Small Molecule Docking of DNA Repair Proteins Associated with Cancer Survival Following PCNA Metagene Adjustment: A Potential Novel Class of Repair Inhibitors. 
 PMID:30759820
                                    
                                
                                    Privileged Structures and Polypharmacology within and between Protein Families. 
 PMID:30613326
                                    
                                
                                    Protein structure networks provide insight into active site flexibility in esterase/lipases from the carnivorous plant Drosera capensis. 
 PMID:30516771
                                    
                                
                                    Mechanism of activating mutations and allosteric drug inhibition of the phosphatase SHP2. 
 PMID:30375376
                                    
                                
                                    THE-DB: a threading model database for comparative protein structure analysis of the E. coli K12 and human proteomes. 
 PMID:30239678
                                    
                                
                                    P2Rank: machine learning based tool for rapid and accurate prediction of ligand binding sites from protein structure. 
 PMID:30109435
                                    
                                
                                    A Comparative Study of Modern Homology Modeling Algorithms for Rhodopsin Structure Prediction. 
 PMID:30087916
                                    
                                
                                    PredMP: a web server for de novo prediction and visualization of membrane proteins. 
 PMID:30084960
                                    
                                
                                    Molecular docking and pharmacological/toxicological assessment of a new compound designed from celecoxib and paracetamol by molecular hybridization. 
 PMID:30039481
                                    
                                
                                    Transcriptional and Translational Landscape of Equine Torovirus. 
 PMID:29950409
                                    
                                
                                    Electrostatic Tuning of a Potassium Channel in Electric Fish. 
 PMID:29937349
                                    
                                
                                    Protein alignment based on higher order conditional random fields for template-based modeling. 
 PMID:29856860
                                    
                                
                                    COACH-D: improved protein-ligand binding sites prediction with refined ligand-binding poses through molecular docking. 
 PMID:29846643
                                    
                                
                                    HotSpot Wizard 3.0: web server for automated design of mutations and smart libraries based on sequence input information. 
 PMID:29796670
                                    
                                
                                    Development of a Prototype System for Archiving Integrative/Hybrid Structure Models of Biological Macromolecules. 
 PMID:29657133
                                    
                                
                                    The first case of NSHL by direct impression on EYA1 gene and identification of one novel mutation in MYO7A in the Iranian families. 
 PMID:29511501
                                    
                                
                                    Protein homology model refinement by large-scale energy optimization. 
 PMID:29507254
                                    
                                
                                    Enhancing Evolutionary Couplings with Deep Convolutional Neural Networks. 
 PMID:29275173
                                    
                                
                                    Computational Studies of Snake Venom Toxins. 
 PMID:29271884
                                    
                                
                                    Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework. 
 PMID:29254494
                                    
                                
                                    LeishDB: a database of coding gene annotation and non-coding RNAs in Leishmania braziliensis. 
 PMID:29220437
                                    
                                
                                    Predictive and Experimental Approaches for Elucidating Protein-Protein Interactions and Quaternary Structures. 
 PMID:29206185
                                    
                                
                                    Continuous Automated Model EvaluatiOn (CAMEO) complementing the critical assessment of structure prediction in CASP12. 
 PMID:29178137
                                    
                                
                                    LIBRA-WA: a web application for ligand binding site detection and protein function recognition. 
 PMID:29126218
                                    
                                
                                    RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education. 
 PMID:29067736
                                    
                                
                                    The NSAID allosteric site of human cytosolic sulfotransferases. 
 PMID:29038294
                                    
                                
                                    Guidelines for the use of flow cytometry and cell sorting in immunological studies. 
 PMID:29023707
                                    
                                
                                    Folding Membrane Proteins by Deep Transfer Learning. 
 PMID:28957654
                                    
                                
                                    Automatic structure prediction of oligomeric assemblies using Robetta in CASP12. 
 PMID:28913931
                                    
                                
                                    Antiproliferative factor (APF) binds specifically to sites within the cytoskeleton-associated protein 4 (CKAP4) extracellular domain. 
 PMID:28893174
                                    
                                
                                    AUC-Maximized Deep Convolutional Neural Fields for Protein Sequence Labeling. 
 PMID:28884168
                                    
                                
                                    Modeling protein quaternary structure of homo- and hetero-oligomers beyond binary interactions by homology. 
 PMID:28874689
                                    
                                
                                    Analysis of deep learning methods for blind protein contact prediction in CASP12. 
 PMID:28845538
                                    
                                
                                    Bradyrhizobium elkanii nod regulon: insights through genomic analysis. 
 PMID:28767122
                                    
                                
                                    The Dark Proteome Database. 
 PMID:28736578
                                    
                                
                                    Databases, Repositories, and Other Data Resources in Structural Biology. 
 PMID:28573593
                                    
                                
                                    Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive. 
 PMID:28573592
                                    
                                
                                    ModFOLD6: an accurate web server for the global and local quality estimation of 3D protein models. 
 PMID:28460136
                                    
                                
                                    WDR23 regulates NRF2 independently of KEAP1. 
 PMID:28453520
                                    
                                
                                    GalaxyHomomer: a web server for protein homo-oligomer structure prediction from a monomer sequence or structure. 
 PMID:28387820
                                    
                                
                                    Comparing co-evolution methods and their application to template-free protein structure prediction. 
 PMID:28171606
                                    
                                
                                    Annotation of Alternatively Spliced Proteins and Transcripts with Protein-Folding Algorithms and Isoform-Level Functional Networks. 
 PMID:28150250
                                    
                                
                                    Protein Bioinformatics Databases and Resources. 
 PMID:28150231
                                    
                                
                                    Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model. 
 PMID:28056090
                                    
                                
                                    Structure prediction and network analysis of chitinases from the Cape sundew, Drosera capensis. 
 PMID:28040565
                                    
                                
                                    QAcon: single model quality assessment using protein structural and contact information with machine learning techniques. 
 PMID:28035027
                                    
                                
                                    Metagenomic mining for thermostable esterolytic enzymes uncovers a new family of bacterial esterases. 
 PMID:27991516
                                    
                                
                                    Replication Protein A Presents Canonical Functions and Is Also Involved in the Differentiation Capacity of Trypanosoma cruzi. 
 PMID:27984589
                                    
                                
                                    The SWISS-MODEL Repository-new features and functionality. 
 PMID:27899672
                                    
                                
                                    PRIMO: An Interactive Homology Modeling Pipeline. 
 PMID:27855192
                                    
                                
                                    Computational modelling of the binding of arachidonic acid to the human monooxygenase CYP2J2. 
 PMID:27796781
                                    
                                
                                    Simultaneous Optimization of Biomolecular Energy Functions on Features from Small Molecules and Macromolecules. 
 PMID:27766851
                                    
                                
                                    ProQ3: Improved model quality assessments using Rosetta energy terms. 
 PMID:27698390
                                    
                                
                                    A Novel Role for Progesterone Receptor Membrane Component 1 (PGRMC1): A Partner and Regulator of Ferrochelatase. 
 PMID:27599036
                                    
                                
                                    AUCpreD: proteome-level protein disorder prediction by AUC-maximized deep convolutional neural fields. 
 PMID:27587688
                                    
                                
                                    Pharmacological targeting of the PDGF-CC signaling pathway for blood-brain barrier restoration in neurological disorders. 
 PMID:27524729
                                    
                                
                                    Predicting Ligand Binding Sites on Protein Surfaces by 3-Dimensional Probability Density Distributions of Interacting Atoms. 
 PMID:27513851
                                    
                                
                                    The archiving and dissemination of biological structure data. 
 PMID:27450113
                                    
                                
                                    Recognizing metal and acid radical ion-binding sites by integrating ab initio modeling with template-based transferals. 
 PMID:27378301
                                    
                                
                                    Comparative Protein Structure Modeling Using MODELLER. 
 PMID:27322406
                                    
                                
                                    ORION: a web server for protein fold recognition and structure prediction using evolutionary hybrid profiles. 
 PMID:27319297
                                    
                                
                                    CMsearch: simultaneous exploration of protein sequence space and structure space improves not only protein homology detection but also protein structure prediction. 
 PMID:27307635
                                    
                                
                                    Blind Evaluation of Hybrid Protein Structure Analysis Methods based on Cross-Linking. 
 PMID:27242194
                                    
                                
                                    Conserved Features in the Structure, Mechanism, and Biogenesis of the Inverse Autotransporter Protein Family. 
 PMID:27190006
                                    
                                
                                    Estimation of Uncertainties in the Global Distance Test (GDT_TS) for CASP Models. 
 PMID:27149620
                                    
                                
                                    CoinFold: a web server for protein contact prediction and contact-assisted protein folding. 
 PMID:27112569
                                    
                                
                                    Phylogenetic analysis of β-xylanase SRXL1 of Sporisorium reilianum and its relationship with families (GH10 and GH11) of Ascomycetes and Basidiomycetes. 
 PMID:27040368
                                    
                                
                                    MreB-Dependent Organization of the E. coli Cytoplasmic Membrane Controls Membrane Protein Diffusion. 
 PMID:26958890
                                    
                                
                                    The next generation of metastatic melanoma: uncovering the genetic variants for anti-BRAF therapy response. 
 PMID:26863566
                                    
                                
                                    ProQ2: estimation of model accuracy implemented in Rosetta. 
 PMID:26733453
                                    
                                
                                    Proteins and Their Interacting Partners: An Introduction to Protein-Ligand Binding Site Prediction Methods. 
 PMID:26694353
                                    
                                
                                    Protein Structure and Function Prediction Using I-TASSER. 
 PMID:26678386
                                    
                                
                                    Improved de novo structure prediction in CASP11 by incorporating coevolution information into Rosetta. 
 PMID:26677056
                                    
                                
                                    The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases. 
 PMID:26615188
                                    
                                
                                    Unexpected features of the dark proteome. 
 PMID:26578815
                                    
                                
                                    Automatic generation of bioinformatics tools for predicting protein-ligand binding sites. 
 PMID:26545824
                                    
                                
                                    MECP2 missense mutations outside the canonical MBD and TRD domains in males with intellectual disability. 
 PMID:26490184
                                    
                                
                                    Antisera Against Certain Conserved Surface-Exposed Peptides of Nontypeable Haemophilus influenzae Are Protective. 
 PMID:26390432
                                    
                                
                                    ABCB4 mutations in adult patients with cholestatic liver disease: impact and phenotypic expression. 
 PMID:26324191
                                    
                                
                                    Dynamic profiling of double-stranded RNA binding proteins. 
 PMID:26184879
                                    
                                
                                    Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop. 
 PMID:26095030
                                    
                                
                                    Building a virtual ligand screening pipeline using free software: a survey. 
 PMID:26094053
                                    
                                
                                    Novel Drug Targets for Food-Borne Pathogen Campylobacter jejuni: An Integrated Subtractive Genomics and Comparative Metabolic Pathway Study. 
 PMID:26061459
                                    
                                
                                    RBO Aleph: leveraging novel information sources for protein structure prediction. 
 PMID:25897112
                                    
                                
                                    I-TASSER server: new development for protein structure and function predictions. 
 PMID:25883148
                                    
                                
                                    IntFOLD: an integrated server for modelling protein structures and functions from amino acid sequences. 
 PMID:25820431
                                    
                                
                                    Discovery of novel new Delhi metallo-β-lactamases-1 inhibitors by multistep virtual screening. 
 PMID:25734558
                                    
                                
                                    Data to knowledge: how to get meaning from your result. 
 PMID:25610627
                                    
                                
                                    The I-TASSER Suite: protein structure and function prediction. 
 PMID:25549265
                                    
                                
                                    C-Terminally fused affinity Strep-tag II is removed by proteolysis from recombinant human erythropoietin expressed in transgenic tobacco plants. 
 PMID:25504272
                                    
                                
                                    Protein structure annotation resources. 
 PMID:25502191
                                    
                                
                                    A computational analysis of the structural determinants of APOBEC3's catalytic activity and vulnerability to HIV-1 Vif. 
 PMID:25461536
                                    
                                
                                    Antifreeze proteins enable plants to survive in freezing conditions. 
 PMID:25431421
                                    
                                
                                    Uncertainty in integrative structural modeling. 
 PMID:25173450
                                    
                                
                                    Assessing the local structural quality of transmembrane protein models using statistical potentials (QMEANBrane). 
 PMID:25161240
                                    
                                
                                    SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information. 
 PMID:24782522
                                    
                                
                                    An association-adjusted consensus deleterious scheme to classify homozygous Mis-sense mutations for personal genome interpretation. 
 PMID:24365473
                                    
                                
                                    PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools. 
 PMID:24285306
                                    
                                
                                    ModBase, a database of annotated comparative protein structure models and associated resources. 
 PMID:24271400
                                    
                                
                                    Protein modeling: what happened to the "protein structure gap"? 
 PMID:24010712
                                    
                                
                                    Comparative protein structure modeling using Modeller. 
 PMID:18428767