BioMart Central
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This tool is a first of its kind, community-driven effort to provide unified access to dozens of biological databases spanning genomics, proteomics, model organisms, cancer data, ontology information and more. The system also simplifies cross-database searches that might otherwise require several complicated steps.
Description
More detailed information about this field from each metasource.
This tool is a first of its kind, community-driven effort to provide unified access to dozens of biological databases spanning genomics, proteomics, model organisms, cancer data, ontology information and more. The system also simplifies cross-database searches that might otherwise require several complicated steps.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:08.567239
Webpage:
http://central.biomart.org/Webpage
More detailed information about this field from each metasource.
Publications:
Publications
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BioMart Central Portal: an open database network for the biological community
PMID: 21930507
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
Publications
More detailed information about this field from each metasource.
BioMart Central Portal: an open database network for the biological community
PMID: 21930507
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
-
BioMart Central Portal: an open database network for the biological community
PubMed citations: 94.
94 articles citing: BioMart Central Portal: an open database network for the biological community
Identification of long non-coding RNAs and RNA binding proteins in breast cancer subtypes. PMID:35027621
Role of Deep Learning in Predicting Aging-Related Diseases: A Scoping Review. PMID:34831148
Lack of CpG islands in human unitary pseudogenes and its implication. PMID:34272576
Elevated expression of the adhesion GPCR ADGRL4/ELTD1 promotes endothelial sprouting angiogenesis without activating canonical GPCR signalling. PMID:33893326
The landscape of molecular chaperones across human tissues reveals a layered architecture of core and variable chaperones. PMID:33846299
dbNSFP v4: a comprehensive database of transcript-specific functional predictions and annotations for human nonsynonymous and splice-site SNVs. PMID:33261662
Rewiring of gene expression in circulating white blood cells is associated with pregnancy outcome in heifers (Bos taurus). PMID:33033295
Conserved Patterns in Developmental Processes and Phases, Rather than Genes, Unite the Highly Divergent Bilateria. PMID:32899936
MicroRNA-mRNA networks define translatable molecular outcome phenotypes in osteosarcoma. PMID:32157112
Multi-omics Data Integration, Interpretation, and Its Application. PMID:32076369
ADGRL4/ELTD1 is a highly conserved angiogenesis-associated orphan adhesion GPCR that emerged with the first vertebrates and comprises 3 evolutionary variants. PMID:31299890
Plasticity of intestinal gene expression profile signatures reflected by nutritional interventions in piglets. PMID:31122193
Putative contributions of the sex chromosome proteins SOX3 and SRY to neurodevelopmental disorders. PMID:30537354
Ranking noncanonical 5' splice site usage by genome-wide RNA-seq analysis and splicing reporter assays. PMID:30355602
System-wide coordinates of higher order functions in host-pathogen environment upon Mycobacterium tuberculosis infection. PMID:29567998
The Damaging Effect of Passenger Mutations on Cancer Progression. PMID:28536279
The RNA-binding protein tristetraprolin schedules apoptosis of pathogen-engaged neutrophils during bacterial infection. PMID:28504646
Age, gender and UV-exposition related effects on gene expression in in vivo aged short term cultivated human dermal fibroblasts. PMID:28475575
Evolutionary and Functional Features of Copy Number Variation in the Cattle Genome. PMID:27920798
Extensive Association of Common Disease Variants with Regulatory Sequence. PMID:27875544
Differential expression of lncRNAs during the HIV replication cycle: an underestimated layer in the HIV-host interplay. PMID:27782208
Genome-Wide Detection of CNVs and Their Association with Meat Tenderness in Nelore Cattle. PMID:27348523
Computational approaches in target identification and drug discovery. PMID:27293534
Modulation of splicing catalysis for therapeutic targeting of leukemia with mutations in genes encoding spliceosomal proteins. PMID:27135740
Pharmacometabolomics-aided Pharmacogenomics in Autoimmune Disease. PMID:27077110
Proteomic Changes in Chicken Plasma Induced by Salmonella typhimurium Lipopolysaccharides. PMID:27053921
Gene expression variability in mammalian embryonic stem cells using single cell RNA-seq data. PMID:26951854
Seqinspector: position-based navigation through the ChIP-seq data landscape to identify gene expression regulators. PMID:26868127
Transcriptional regulatory networks in Arabidopsis thaliana during single and combined stresses. PMID:26681689
Increased production of piRNAs from euchromatic clusters and genes in Anopheles gambiae compared with Drosophila melanogaster. PMID:26617674
CpG island erosion, polycomb occupancy and sequence motif enrichment at bivalent promoters in mammalian embryonic stem cells. PMID:26582124
BioDB extractor: customized data extraction system for commonly used bioinformatics databases. PMID:26516349
BubbleGUM: automatic extraction of phenotype molecular signatures and comprehensive visualization of multiple Gene Set Enrichment Analyses. PMID:26481321
DAPPER: a data-mining resource for protein-protein interactions. PMID:26405458
Transcriptomic responses to prion disease in rats. PMID:26341492
Genes conserved in bilaterians but jointly lost with Myc during nematode evolution are enriched in cell proliferation and cell migration functions. PMID:26173873
Genome Wide Distributions and Functional Characterization of Copy Number Variations between Chinese and Western Pigs. PMID:26154170
Allele-specific binding of ZFP57 in the epigenetic regulation of imprinted and non-imprinted monoallelic expression. PMID:26025256
Implementation of linked data in the life sciences at BioHackathon 2011. PMID:25973165
The BioMart community portal: an innovative alternative to large, centralized data repositories. PMID:25897122
Genetic conflict reflected in tissue-specific maps of genomic imprinting in human and mouse. PMID:25848752
Editorial. PMID:25793962
Exceptionally widespread nanomachines composed of type IV pilins: the prokaryotic Swiss Army knives. PMID:25793961
Linkage and association analysis of obesity traits reveals novel loci and interactions with dietary n-3 fatty acids in an Alaska Native (Yup'ik) population. PMID:25772781
Towards further defining the proteome of mouse saliva. PMID:25762866
Metabolic and chaperone gene loss marks the origin of animals: evidence for Hsp104 and Hsp78 chaperones sharing mitochondrial enzymes as clients. PMID:25710177
Conserved syntenic clusters of protein coding genes are missing in birds. PMID:25518852
Spatiotemporal transcriptomics reveals the evolutionary history of the endoderm germ layer. PMID:25487147
In silico analysis of autoimmune diseases and genetic relationships to vaccination against infectious diseases. PMID:25486901
Remodeling Cildb, a popular database for cilia and links for ciliopathies. PMID:25422781
Human cancer databases (review). PMID:25369839
Master regulators, regulatory networks, and pathways of glioblastoma subtypes. PMID:25368508
OvMark: a user-friendly system for the identification of prognostic biomarkers in publically available ovarian cancer gene expression datasets. PMID:25344116
BCCTBbp: the Breast Cancer Campaign Tissue Bank bioinformatics portal. PMID:25332396
Collaborative mining and interpretation of large-scale data for biomedical research insights. PMID:25268270
RTCGAToolbox: a new tool for exporting TCGA Firehose data. PMID:25181531
Analysis of stop-gain and frameshift variants in human innate immunity genes. PMID:25058640
Uncovering adaptive evolution in the human lineage. PMID:25030307
Comparative analysis of human tissue interactomes reveals factors leading to tissue-specific manifestation of hereditary diseases. PMID:24921629
Annexin A2 mediates apical trafficking of renal Na⁺-K⁺-2Cl⁻ cotransporter. PMID:24526686
Genome scale transcriptional response diversity among ten ecotypes of Arabidopsis thaliana during heat stress. PMID:24409190
Gramene 2013: comparative plant genomics resources. PMID:24217918
GoMapMan: integration, consolidation and visualization of plant gene annotations within the MapMan ontology. PMID:24194592
PolymiRTS Database 3.0: linking polymorphisms in microRNAs and their target sites with human diseases and biological pathways. PMID:24163105
Genome-scale cold stress response regulatory networks in ten Arabidopsis thaliana ecotypes. PMID:24148294
Global gene expression response of a population exposed to benzene: a pilot study exploring the use of RNA-sequencing technology. PMID:23907980
Evidence for novel genetic loci associated with metabolic traits in Yup'ik people. PMID:23907821
The KUPNetViz: a biological network viewer for multiple -omics datasets in kidney diseases. PMID:23883183
dbNSFP v2.0: a database of human non-synonymous SNVs and their functional predictions and annotations. PMID:23843252
BreastMark: an integrated approach to mining publicly available transcriptomic datasets relating to breast cancer outcome. PMID:23820017
Genome-wide, whole mount in situ analysis of transcriptional regulators in zebrafish embryos. PMID:23684812
PathVisio-Faceted Search: an exploration tool for multi-dimensional navigation of large pathways. PMID:23547033
GATA-1 genome-wide occupancy associates with distinct epigenetic profiles in mouse fetal liver erythropoiesis. PMID:23519611
Transcriptome responses to combinations of stresses in Arabidopsis. PMID:23447525
Microsatellite tandem repeats are abundant in human promoters and are associated with regulatory elements. PMID:23405090
STIFDB2: an updated version of plant stress-responsive transcription factor database with additional stress signals, stress-responsive transcription factor binding sites and stress-responsive genes in Arabidopsis and rice. PMID:23314754
Identification of genome-wide copy number variations among diverse pig breeds by array CGH. PMID:23265576
The TissueNet database of human tissue protein-protein interactions. PMID:23193266
The EBI enzyme portal. PMID:23175605
Genenames.org: the HGNC resources in 2013. PMID:23161694
Nrac, a novel nutritionally-regulated adipose and cardiac-enriched gene. PMID:23029450
AbsIDconvert: an absolute approach for converting genetic identifiers at different granularities. PMID:22967011
RhesusBase: a knowledgebase for the monkey research community. PMID:22965133
The identification of candidate genes and SNP markers for classical bovine spongiform encephalopathy susceptibility. PMID:22918267
A minimal connected network of transcription factors regulated in human tumors and its application to the quest for universal cancer biomarkers. PMID:22761861
Bioinformatics advances in saliva diagnostics. PMID:22699264
Transcriptome of the adult female malaria mosquito vector Anopheles albimanus. PMID:22646700
SalmonDB: a bioinformatics resource for Salmo salar and Oncorhynchus mykiss. PMID:22120661
BioMart: driving a paradigm change in biological data management. PMID:22083790
Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments. PMID:22064864
The Reactome BioMart. PMID:22012987
BioMart: a data federation framework for large collaborative projects. PMID:21930506
International Cancer Genome Consortium Data Portal--a one-stop shop for cancer genomics data. PMID:21930502
The InterPro BioMart: federated query and web service access to the InterPro Resource. PMID:21785143
Tags:
Tags
More detailed information about this field from each metasource.
database management
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
model organisms
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
zoology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
Tags
More detailed information about this field from each metasource.
database management
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:08.567239
model organisms
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:08.567239
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:08.567239
molecular interactions, pathways and networks
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:08.567239
zoology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:08.567239
data management model organisms molecular interactions, pathways and networks zoology
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