Legume Information System
Names
More detailed information about this field from each metasource.
Legume Information System
metasource: Fairsharing.org
version: FAIRsharing.org: LIS; Legume Information System; DOI: https://doi.org/10.25504/FAIRsharing.BZKHEH; Last edited: March 10, 2021, 1:06 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
LIS
metasource: Fairsharing.org
version: FAIRsharing.org: LIS; Legume Information System; DOI: https://doi.org/10.25504/FAIRsharing.BZKHEH; Last edited: March 10, 2021, 1:06 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Legume Information System (LIS)
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:37.936297
lis
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:37.936297
Names
More detailed information about this field from each metasource.
Legume Information System
metasource: Fairsharing.orgversion: FAIRsharing.org: LIS; Legume Information System; DOI: https://doi.org/10.25504/FAIRsharing.BZKHEH; Last edited: March 10, 2021, 1:06 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
LIS
metasource: Fairsharing.orgversion: FAIRsharing.org: LIS; Legume Information System; DOI: https://doi.org/10.25504/FAIRsharing.BZKHEH; Last edited: March 10, 2021, 1:06 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Legume Information System (LIS)
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:37.936297
lis
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:37.936297
Other names: LIS, Legume Information System (LIS), lis
Names
More detailed information about this field from each metasource.
Legume Information System
metasource: Fairsharing.orgversion: FAIRsharing.org: LIS; Legume Information System; DOI: https://doi.org/10.25504/FAIRsharing.BZKHEH; Last edited: March 10, 2021, 1:06 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
LIS
metasource: Fairsharing.orgversion: FAIRsharing.org: LIS; Legume Information System; DOI: https://doi.org/10.25504/FAIRsharing.BZKHEH; Last edited: March 10, 2021, 1:06 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Legume Information System (LIS)
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:37.936297
lis
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:37.936297
The Legume Information System (LIS) is a collaborative, community resource to facilitate crop improvement by integrating genetic, genomic, and trait data across legume species.
Description
More detailed information about this field from each metasource.
The Legume Information System (LIS) is a collaborative, community resource to facilitate crop improvement by integrating genetic, genomic, and trait data across legume species.
metasource: Fairsharing.orgversion: FAIRsharing.org: LIS; Legume Information System; DOI: https://doi.org/10.25504/FAIRsharing.BZKHEH; Last edited: March 10, 2021, 1:06 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
The Legume Information System enables productive applied and basic research in the legumes by relating data from multiple crop and model species, and by helping researchers traverse among various data types.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:37.936297
Webpage:
https://legumeinfo.org/Webpage
More detailed information about this field from each metasource.
https://legumeinfo.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: LIS; Legume Information System; DOI: https://doi.org/10.25504/FAIRsharing.BZKHEH; Last edited: March 10, 2021, 1:06 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
http://comparative-legumes.org/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:37.936297
Publications:
Publications
More detailed information about this field from each metasource.
Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family
PMID: 26546515
metasource: Fairsharing.org
version: FAIRsharing.org: LIS; Legume Information System; DOI: https://doi.org/10.25504/FAIRsharing.BZKHEH; Last edited: March 10, 2021, 1:06 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
The Legume Information System (LIS): an integrated information resource for comparative legume biology
PMID: 15608283
metasource: Fairsharing.org
version: FAIRsharing.org: LIS; Legume Information System; DOI: https://doi.org/10.25504/FAIRsharing.BZKHEH; Last edited: March 10, 2021, 1:06 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:37.936297
Leveraging model legume information to find candidate genes for soybean sudden death syndrome using the legume information system
PMID: 18287696
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:37.936297
Publications
More detailed information about this field from each metasource.
Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family
PMID: 26546515
metasource: Fairsharing.org
version: FAIRsharing.org: LIS; Legume Information System; DOI: https://doi.org/10.25504/FAIRsharing.BZKHEH; Last edited: March 10, 2021, 1:06 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
The Legume Information System (LIS): an integrated information resource for comparative legume biology
PMID: 15608283
metasource: Fairsharing.org
version: FAIRsharing.org: LIS; Legume Information System; DOI: https://doi.org/10.25504/FAIRsharing.BZKHEH; Last edited: March 10, 2021, 1:06 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:37.936297
Leveraging model legume information to find candidate genes for soybean sudden death syndrome using the legume information system
PMID: 18287696
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:37.936297
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Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family
PubMed citations: 50.
50 articles citing: Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family
Evaluating Plant Gene Models Using Machine Learning. PMID:35736770
GrainGenes: a data-rich repository for small grains genetics and genomics. PMID:35616118
Characterization of SOD and GPX Gene Families in the Soybeans in Response to Drought and Salinity Stresses. PMID:35326109
Plant Reactome and PubChem: The Plant Pathway and (Bio)Chemical Entity Knowledgebases. PMID:35037224
Doing Genetic and Genomic Biology Using the Legume Information System and Associated Resources. PMID:35037201
A review of biotechnological approaches towards crop improvement in African yam bean (Sphenostylis stenocarpa Hochst. Ex A. Rich.). PMID:34901510
Comparative transcriptomic profiling of susceptible and resistant cultivars of pigeonpea demonstrates early molecular responses during Fusarium udum infection. PMID:34785701
Introducing Beneficial Alleles from Plant Genetic Resources into the Wheat Germplasm. PMID:34681081
Genome-Wide Association Study of Seed Folate Content in Common Bean. PMID:34531882
A pan-genomic approach to genome databases using maize as a model system. PMID:34416864
Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databases. PMID:34251419
PopAmaranth: A population genetic genome browser for grain amaranths and their wild relatives. PMID:33822034
Insights into the diversification of subclade IVa bHLH transcription factors in Fabaceae. PMID:33622255
A cellulose synthase-derived enzyme catalyses 3-O-glucuronosylation in saponin biosynthesis. PMID:33199711
Genome-wide association study in accessions of the mini-core collection of mungbean (Vigna radiata) from the World Vegetable Gene Bank (Taiwan). PMID:33050907
Origin and Evolutionary Dynamics of the miR2119 and ADH1 Regulatory Module in Legumes. PMID:33045056
Insights into the evolution of symbiosis gene copy number and distribution from a chromosome-scale Lotus japonicus Gifu genome sequence. PMID:32658273
Common Vetch: A Drought Tolerant, High Protein Neglected Leguminous Crop With Potential as a Sustainable Food Source. PMID:32636858
Genomic Analysis of Vavilov's Historic Chickpea Landraces Reveals Footprints of Environmental and Human Selection. PMID:32486400
Identification of Alternative Mitochondrial Electron Transport Pathway Components in Chickpea Indicates a Differential Response to Salinity Stress between Cultivars. PMID:32481694
Pulse Crop Genetics for a Sustainable Future: Where We Are Now and Where We Should Be Heading. PMID:32431724
Bioinformatics Resources for Plant Abiotic Stress Responses: State of the Art and Opportunities in the Fast Evolving -Omics Era. PMID:32384671
Genetic Associations in Four Decades of Multienvironment Trials Reveal Agronomic Trait Evolution in Common Bean. PMID:32205398
Reconstruction of the Evolutionary Histories of UGT Gene Superfamily in Legumes Clarifies the Functional Divergence of Duplicates in Specialized Metabolism. PMID:32182686
Evolution of the Small Family of Alternative Splicing Modulators Nuclear Speckle RNA-binding Proteins in Plants. PMID:32085457
PRPs localized to the middle lamellae are required for cortical tissue integrity in Medicago truncatula roots. PMID:31927659
Molecular Basis of C-30 Product Regioselectivity of Legume Oxidases Involved in High-Value Triterpenoid Biosynthesis. PMID:31850023
Insight Into the Prospects for the Improvement of Seed Starch in Legume-A Review. PMID:31736985
Extension modules for storage, visualization and querying of genomic, genetic and breeding data in Tripal databases. PMID:31725859
Tripal MapViewer: A tool for interactive visualization and comparison of genetic maps. PMID:31688940
Plant Reactome: a knowledgebase and resource for comparative pathway analysis. PMID:31680153
Sugar transporters in Fabaceae, featuring SUT MST and SWEET families of the model plant Medicago truncatula and the agricultural crop Pisum sativum. PMID:31568488
KnowPulse: A Web-Resource Focused on Diversity Data for Pulse Crop Improvement. PMID:31428111
Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases. PMID:31328773
Developmental Pleiotropy Shaped the Roots of the Domesticated Common Bean (Phaseolus vulgaris). PMID:31061105
Salinity stress response and 'omics' approaches for improving salinity stress tolerance in major grain legumes. PMID:30637478
Translational genomics and multi-omics integrated approaches as a useful strategy for crop breeding. PMID:30353370
Genome-Wide Identification, Characterization, and Expression Profiling of the Legume BZR Transcription Factor Gene Family. PMID:30283468
The Sequenced Angiosperm Genomes and Genome Databases. PMID:29706973
Adapting legume crops to climate change using genomic approaches. PMID:29603775
Genome Context Viewer: visual exploration of multiple annotated genomes using microsynteny. PMID:29194466
A transcriptome-SNP-derived linkage map of Apios americana (potato bean) provides insights about genome re-organization and synteny conservation in the phaseoloid legumes. PMID:29071392
Molecular basis of the evolution of alternative tyrosine biosynthetic routes in plants. PMID:28671678
PpTFDB: A pigeonpea transcription factor database for exploring functional genomics in legumes. PMID:28651001
Genome-wide SNP identification, linkage map construction and QTL mapping for seed mineral concentrations and contents in pea (Pisum sativum L.). PMID:28193168
blend4php: a PHP API for galaxy. PMID:28077564
QTLomics in Soybean: A Way Forward for Translational Genomics and Breeding. PMID:28066449
Lotus Base: An integrated information portal for the model legume Lotus japonicus. PMID:28008948
Plant Reactome: a resource for plant pathways and comparative analysis. PMID:27799469
Proteomics and Metabolomics: Two Emerging Areas for Legume Improvement. PMID:26734026 -
The Legume Information System (LIS): an integrated information resource for comparative legume biology
PubMed citations: 33.
33 articles citing: The Legume Information System (LIS): an integrated information resource for comparative legume biology
Doing Genetic and Genomic Biology Using the Legume Information System and Associated Resources. PMID:35037201
Identification of quantitative trait nucleotides and candidate genes for soybean seed weight by multiple models of genome-wide association study. PMID:32873245
GeneNoteBook, a collaborative notebook for comparative genomics. PMID:31199463
A high-density consensus linkage map of white lupin highlights synteny with narrow-leafed lupin and provides markers tagging key agronomic traits. PMID:29127429
qPrimerDB: a thermodynamics-based gene-specific qPCR primer database for 147 organisms. PMID:28977518
ROOT DETERMINED NODULATION1 Is Required for M. truncatula CLE12, But Not CLE13, Peptide Signaling through the SUNN Receptor Kinase. PMID:28592666
QTLomics in Soybean: A Way Forward for Translational Genomics and Breeding. PMID:28066449
Lotus Base: An integrated information portal for the model legume Lotus japonicus. PMID:28008948
LegumeIP 2.0--a platform for the study of gene function and genome evolution in legumes. PMID:26578557
Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family. PMID:26546515
Naturally occurring diversity helps to reveal genes of adaptive importance in legumes. PMID:25954294
The chickpea genomic web resource: visualization and analysis of the desi-type Cicer arietinum nuclear genome for comparative exploration of legumes. PMID:25518738
Genomics-assisted breeding in four major pulse crops of developing countries: present status and prospects. PMID:24710822
Silicon era of carbon-based life: application of genomics and bioinformatics in crop stress research. PMID:23759993
PGDD: a database of gene and genome duplication in plants. PMID:23180799
Positional cloning and characterization reveal the molecular basis for soybean maturity locus E1 that regulates photoperiodic flowering. PMID:22619331
LegumeIP: an integrative database for comparative genomics and transcriptomics of model legumes. PMID:22110036
Phytozome: a comparative platform for green plant genomics. PMID:22110026
Applications and methods utilizing the Simple Semantic Web Architecture and Protocol (SSWAP) for bioinformatics resource discovery and disparate data and service integration. PMID:20525377
Single strand conformation polymorphism based SNP and Indel markers for genetic mapping and synteny analysis of common bean (Phaseolus vulgaris L.). PMID:20030833
An expression database for roots of the model legume Medicago truncatula under salt stress. PMID:19906315
A single gene, AIN, in Medicago truncatula mediates a hypersensitive response to both bluegreen aphid and pea aphid, but confers resistance only to bluegreen aphid. PMID:19690018
Genetic diversity and genomic distribution of homologs encoding NBS-LRR disease resistance proteins in sunflower. PMID:18553106
Multiple models for Rosaceae genomics. PMID:18487361
Soybean genomics: Developments through the use of cultivar "Forrest". PMID:18483614
Recent Advances in Medicago truncatula Genomics. PMID:18288239
A comparative map viewer integrating genetic maps for Brassica and Arabidopsis. PMID:17645810
Genome sequencing and genome resources in model legumes. PMID:17556522
Using genomics to study legume seed development. PMID:17556519
Genome mapping of white clover (Trifolium repens L.) and comparative analysis within the Trifolieae using cross-species SSR markers. PMID:17356868
A sequence based synteny map between soybean and Arabidopsis thaliana. PMID:17210083
An updated 'Essex' by 'Forrest' linkage map and first composite interval map of QTL underlying six soybean traits. PMID:16953420
PeanutMap: an online genome database for comparative molecular maps of peanut. PMID:16904007 -
Leveraging model legume information to find candidate genes for soybean sudden death syndrome using the legume information system
PubMed citations: 1.
1 articles citing: Leveraging model legume information to find candidate genes for soybean sudden death syndrome using the legume information system
Functional genomics of soybean for improvement of productivity in adverse conditions. PMID:20582712
Tags:
Tags
More detailed information about this field from each metasource.
phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: LIS; Legume Information System; DOI: https://doi.org/10.25504/FAIRsharing.BZKHEH; Last edited: March 10, 2021, 1:06 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
mapping
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:37.936297
gene transcripts
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:37.936297
plant biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:37.936297
model organisms
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:37.936297
molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:37.936297
Tags
More detailed information about this field from each metasource.
phenotype
metasource: Fairsharing.orgversion: FAIRsharing.org: LIS; Legume Information System; DOI: https://doi.org/10.25504/FAIRsharing.BZKHEH; Last edited: March 10, 2021, 1:06 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
mapping
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:37.936297
gene transcripts
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:37.936297
plant biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:37.936297
model organisms
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:37.936297
molecular interactions, pathways and networks
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:37.936297
phenotype mapping gene transcripts plant biology model organisms molecular interactions, pathways and networks
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