Tag: other plants

This site hosts Brassica genome databases.

The Sol Genomics Network (SGN) is a database and website dedicated to the genomic information of the Solanaceae family, which includes species such as tomato, potato, pepper, petunia and eggplant.

CottonGen is a cotton community genomics, genetics and breeding database being developed to enable basic, translational and applied research in cotton. It is being built using the open-source Tripal database infrastructure. CottonGen supercedes Cotto ...

MaizeGDB is the maize research community's central repository for genetics and genomics information.

SoyBase, the USDA-ARS soybean genetic database, is a comprehensive repository for professionally curated genetics, genomics and related data resources for soybean. SoyBase contains genetic, physical and genomic sequence maps integrated with qualitati ...

The Genome Database for Rosaceae (GDR) is a curated and integrated web-based relational database providing centralized access to Rosaceae genomics and genetics data and analysis tools to facilitate cross-species utilization of data.

Panzea provides information on the connection between phenotypes and genotypes of complex traits in maize and its wild relative, teosinte, and specifically in how rare genetic variations contribute to overall plant function.

The Tomato Functional Genomics Database integrates several prior databases including the Tomato Expression Database and Tomato Metabolite Database, and the Tomato Small RNA Database.

The LegumeIP 2.0 database hosts large-scale genomics and transcriptomics data and provides integrative bioinformatics tools for the study of gene function and evolution in legumes.

Shanghai RAPESEED Database: a resource for functional genomics studies of seed development and fatty acid metabolism of Brassica.

Soybean Knowledge Base (SoyKB), is a comprehensive all-inclusive web resource developed for soybean translational genomics and molecular breeding. SoyKB stores information about genes/proteins, miRNAs/sRNAs, metabolites, SNPs, plant introduction (PI ...

Coffee community genomics, genetics and breeding data and analysis tools

Co-expression networks for diploid and polyploid Gossypium

Gene- or transcript-specific primers for qPCR

Co-functional networks for soy bean, Glycine max

Medicago trunculata-related resources

ESTs from two diatom algae, Thalassiosira pseudonana and Phaeodactylum tricornutum

ForestTreeDB is intended as a resource that centralizes large-scale EST sequencing results from several tree species (http://foresttree.org/ftdb). Our group at the Center for Computational Genomics and Bioinformatics (University of Minnesota) aims to ...

The TIGR Maize Database is a repository of publicly available maize genomic sequences, we have created the TIGR Maize Database (http://maize.tigr.org). In this resource, we have assembled approximately 900,000 gene-enriched reads into Assembled Zea m ...

TomatEST is a secondary database integrating EST/cDNA sequence information from different libraries of multiple tomato species collected from dbEST. Redundant EST collections from each species are organized into clusters (gene indices). A cluster con ...

The database PoMaMo (Potato Maps and More) was established within the German Plant Genome Project "GABI". It harbours to date information on molecular maps of all twelve potato chromosomes with about 1000 mapped elements, sequence data, putative gene ...