Coffee Genome Hub

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Coffee Genome Hub

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:59.187644

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Coffee_Genome_Hub

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:59.187644

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Other names: Coffee_Genome_Hub

Coffee community genomics, genetics and breeding data and analysis tools

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Publications

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The coffee genome hub: a resource for coffee genomes
PMID: 25392413

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:59.187644

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http://dx.doi.org/10.1093/nar/gku1108

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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http://dx.doi.org/10.1126/science.1255274

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:59.187644

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• The coffee genome hub: a resource for coffee genomes PubMed citations: 23.

  23 articles citing: The coffee genome hub: a resource for coffee genomes

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  Genome-Wide Analysis, Modeling, and Identification of Amino Acid Binding Motifs Suggest the Involvement of GH3 Genes during Somatic Embryogenesis of Coffea canephora. PMID:34685847

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  An ancient whole-genome duplication event and its contribution to flavor compounds in the tea plant (Camellia sinensis). PMID:34333548

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  Genetic diversity of native and cultivated Ugandan Robusta coffee (Coffea canephora Pierre ex A. Froehner): Climate influences, breeding potential and diversity conservation. PMID:33556074

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  Genome-Wide Screening and Characterization of Non-Coding RNAs in Coffea canephora. PMID:32932872

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  Transcriptome analysis of the induction of somatic embryogenesis in Coffea canephora and the participation of ARF and Aux/IAA genes. PMID:31637116

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  Homeologous regulation of Frigida-like genes provides insights on reproductive development and somatic embryogenesis in the allotetraploid Coffea arabica. PMID:31186437

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  Rice Galaxy: an open resource for plant science. PMID:31107941

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  Glycosyltransferase Family 61 in Liliopsida (Monocot): The Story of a Gene Family Expansion. PMID:30619412

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  Development and evaluation of a genome-wide Coffee 8.5K SNP array and its application for high-density genetic mapping and for investigating the origin of Coffea arabica L. PMID:30582651

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  Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops. PMID:30321383

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  Inpactor, Integrated and Parallel Analyzer and Classifier of LTR Retrotransposons and Its Application for Pineapple LTR Retrotransposons Diversity and Dynamics. PMID:29799487

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  Genome-wide association study reveals candidate genes influencing lipids and diterpenes contents in Coffea arabica L. PMID:29323254

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  MGIS: managing banana (Musa spp.) genetic resources information and high-throughput genotyping data. PMID:29220435

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  Shaping the evolutionary tree of green plants: evidence from the GST family. PMID:29084977

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  Long-read sequencing of the coffee bean transcriptome reveals the diversity of full-length transcripts. PMID:29048540

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  Transcripts of pectin-degrading enzymes and isolation of complete cDNA sequence of a pectate lyase gene induced by coffee white stem borer (Xylotrechus quadripes) in the bark tissue of Coffea canephora (robusta coffee). PMID:28444590

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  Genome-wide identification, classification and transcriptional analysis of nitrate and ammonium transporters in Coffea. PMID:28399192

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  Evolutionary Analyses of GRAS Transcription Factors in Angiosperms. PMID:28303145

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  Transcriptome Analysis of Hamelia patens (Rubiaceae) Anthers Reveals Candidate Genes for Tapetum and Pollen Wall Development. PMID:28119704

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  Transcriptome Analysis of Leaves, Flowers and Fruits Perisperm of Coffea arabica L. Reveals the Differential Expression of Genes Involved in Raffinose Biosynthesis. PMID:28068432

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  Shift in precipitation regime promotes interspecific hybridization of introduced Coffea species. PMID:27096083

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  The Greater Phenotypic Homeostasis of the Allopolyploid Coffea arabica Improved the Transcriptional Homeostasis Over that of Both Diploid Parents. PMID:26355011

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  Identification of Putative Molecular Markers Associated with Root Traits in Coffea canephora Pierre ex Froehner. PMID:25821599
• http://dx.doi.org/10.1093/nar/gku1108
• http://dx.doi.org/10.1126/science.1255274

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plant databases

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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other plants

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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plant biology

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:59.187644

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bioinformatics

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:59.187644

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plant other plants plant biology bioinformatics