Panzea
Names
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Panzea
metasource: Fairsharing.org
version: None
PANZEA
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
Panzea
metasource: Fairsharing.orgversion: None
PANZEA
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
Panzea
metasource: Fairsharing.orgversion: None
PANZEA
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Panzea provides information on the connection between phenotypes and genotypes of complex traits in maize and its wild relative, teosinte, and specifically in how rare genetic variations contribute to overall plant function.
Description
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Panzea provides information on the connection between phenotypes and genotypes of complex traits in maize and its wild relative, teosinte, and specifically in how rare genetic variations contribute to overall plant function.
metasource: Fairsharing.orgversion: None
Serving as a community resource, Panzea (http://www.panzea.org) is the bioinformatics arm of the Molecular and Functional Diversity in the Maize Genome project. Maize, a classical model for genetic studies, is an important crop species and also the most diverse crop species known. On average, two randomly chosen maize lines have one SNP every ~100 bp; this divergence is roughly equivalent to the differences between humans and chimpanzees. This exceptional genotypic diversity underlies the phenotypic diversity maize needs to be cultivated in a wide range of environments. The Molecular and Functional Diversity in the Maize Genome project aims to understand how selection has shaped molecular diversity in maize and then relate molecular diversity to functional phenotypic variation. The project will screen 4000 loci for the signature of selection and create a wide range of maize and maize-teosinte mapping populations. These populations will be genotyped and phenotyped, permitting high-power and high-resolution dissection of the traits and relating the molecular diversity to functional variation. Panzea provides access to the genotype, phenotype, and polymorphism data produced by the project through user-friendly web-based database searches and data retrieval/visualization tools, as well as a wide variety of information and services related to maize diversity.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
https://www.panzea.org/Webpage
More detailed information about this field from each metasource.
https://www.panzea.org/
metasource: Fairsharing.orgversion: None
http://www.panzea.org/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Publications:
Publications
More detailed information about this field from each metasource.
Panzea: a database and resource for molecular and functional diversity in the maize genome
PMID: 16381974
metasource: Fairsharing.org
version: None
Panzea: an update on new content and features
PMID: 18029361
metasource: Fairsharing.org
version: None
Development of a maize molecular evolutionary genomic database
PMID: 18629130
metasource: Fairsharing.org
version: None
Publications
More detailed information about this field from each metasource.
Panzea: a database and resource for molecular and functional diversity in the maize genome
PMID: 16381974
metasource: Fairsharing.org
version: None
Panzea: an update on new content and features
PMID: 18029361
metasource: Fairsharing.org
version: None
Development of a maize molecular evolutionary genomic database
PMID: 18629130
metasource: Fairsharing.org
version: None
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Panzea: a database and resource for molecular and functional diversity in the maize genome
PubMed citations: 36.
36 articles citing: Panzea: a database and resource for molecular and functional diversity in the maize genome
Genomic insights into positive selection during barley domestication. PMID:35641942
The genetic architecture of leaf stable carbon isotope composition in Zea mays and the effect of transpiration efficiency on leaf elemental accumulation. PMID:34544133
Development of genic KASP SNP markers from RNA-Seq data for map-based cloning and marker-assisted selection in maize. PMID:33771110
Natural variation in plant telomere length is associated with flowering time. PMID:33580702
Deciphering the Genetic Diversity of Landraces With High-Throughput SNP Genotyping of DNA Bulks: Methodology and Application to the Maize 50k Array. PMID:33488638
High-Throughput Genotyping Technologies in Plant Taxonomy. PMID:33301093
ZEAMAP, a Comprehensive Database Adapted to the Maize Multi-Omics Era. PMID:32629608
MaizeCUBIC: a comprehensive variation database for a maize synthetic population. PMID:32548639
Identifying genetic variants underlying phenotypic variation in plants without complete genomes. PMID:32284578
Whole-Genome and Transposed Duplication Contributes to the Expansion and Diversification of TLC Genes in Maize. PMID:31689978
The Second Site Modifier, Sympathy for the ligule, Encodes a Homolog of Arabidopsis ENHANCED DISEASE RESISTANCE4 and Rescues the Liguleless narrow Maize Mutant. PMID:31217219
Diverse Components of Resistance to Fusarium verticillioides Infection and Fumonisin Contamination in Four Maize Recombinant Inbred Families. PMID:30717228
SNPversity: a web-based tool for visualizing diversity. PMID:29688387
Genetic relatedness of previously Plant-Variety-Protected commercial maize inbreds. PMID:29236738
Testing the link between genome size and growth rate in maize. PMID:27651994
MODEM: multi-omics data envelopment and mining in maize. PMID:27504011
CicArVarDB: SNP and InDel database for advancing genetics research and breeding applications in chickpea. PMID:26289427
Positional cloning in maize (Zea mays subsp. mays, Poaceae). PMID:25606355
Mapping the diversity of maize races in Mexico. PMID:25486121
Sequence and ionomic analysis of divergent strains of maize inbred line B73 with an altered growth phenotype. PMID:24804793
Improving the accuracy of whole genome prediction for complex traits using the results of genome wide association studies. PMID:24663104
Identification of miRNAs and their target genes in developing maize ears by combined small RNA and degradome sequencing. PMID:24422852
OPTIMAS-DW: a comprehensive transcriptomics, metabolomics, ionomics, proteomics and phenomics data resource for maize. PMID:23272737
Genetic diversity analysis of elite European maize (Zea mays L.) inbred lines using AFLP, SSR, and SNP markers reveals ascertainment bias for a subset of SNPs. PMID:22945268
QTL Controlling Masculinization of Ear Tips in a Maize (Zea mays L.) Intraspecific Cross. PMID:22384344
The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data. PMID:22120662
High-throughput SNP discovery and genotyping in durum wheat (Triticum durum Desf.). PMID:21611761
Multivariate analysis of maize disease resistances suggests a pleiotropic genetic basis and implicates a GST gene. PMID:21490302
A genotypic and phenotypic information source for marker-assisted selection of cereals: the CEREALAB database. PMID:21247929
Panzea: an update on new content and features. PMID:18029361
Gramene: a growing plant comparative genomics resource. PMID:17984077
Nonadditive expression and parent-of-origin effects identified by microarray and allele-specific expression profiling of maize endosperm. PMID:17766400
Allele-specific expression patterns reveal biases and embryo-specific parent-of-origin effects in hybrid maize. PMID:17693532
A comparison of simple sequence repeat and single nucleotide polymorphism marker technologies for the genotypic analysis of maize (Zea mays L.). PMID:17639299
QTL mapping with near-isogenic lines in maize. PMID:17308934
Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression patterns in the F1 hybrid. PMID:16702414 -
Panzea: an update on new content and features
PubMed citations: 12.
12 articles citing: Panzea: an update on new content and features
Contrasting Water Withholding Responses of Young Maize Plants Reveal Link Between Lipid Peroxidation and Osmotic Regulation Corroborated by Genetic Analysis. PMID:35873985
Seed Weight as a Covariate in Association and Prediction Studies for Biomass Traits in Maize Seedlings. PMID:32093233
SNPversity: a web-based tool for visualizing diversity. PMID:29688387
A remorin gene is implicated in quantitative disease resistance in maize. PMID:26849237
MaizeGDB update: new tools, data and interface for the maize model organism database. PMID:26432828
Unraveling genomic complexity at a quantitative disease resistance locus in maize. PMID:25009146
Copy number polymorphism in plant genomes. PMID:23989647
Next-generation phenotyping: requirements and strategies for enhancing our understanding of genotype-phenotype relationships and its relevance to crop improvement. PMID:23471459
ZmCCT and the genetic basis of day-length adaptation underlying the postdomestication spread of maize. PMID:22711828
MaizeGDB becomes 'sequence-centric'. PMID:21847242
The genetics of quantitative traits: challenges and prospects. PMID:19584810
Genomic and genetic database resources for the grasses. PMID:19126704 -
Development of a maize molecular evolutionary genomic database
PubMed citations: 0.
0 articles citing: Development of a maize molecular evolutionary genomic database
Tags:
Tags
More detailed information about this field from each metasource.
genome annotation
metasource: Fairsharing.org
version: None
genome-wide association study
metasource: Fairsharing.org
version: None
genotype
metasource: Fairsharing.org
version: None
phenotype
metasource: Fairsharing.org
version: None
rna sequencing
metasource: Fairsharing.org
version: None
single nucleotide polymorphism
metasource: Fairsharing.org
version: None
plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
other plants
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
genome annotation
metasource: Fairsharing.orgversion: None
genome-wide association study
metasource: Fairsharing.orgversion: None
genotype
metasource: Fairsharing.orgversion: None
phenotype
metasource: Fairsharing.orgversion: None
rna sequencing
metasource: Fairsharing.orgversion: None
single nucleotide polymorphism
metasource: Fairsharing.orgversion: None
plant databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
other plants
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
genome annotation genome-wide association study genotype phenotype rna sequence single nucleotide polymorphism plant other plants
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