Shanghai Rapeseed Database
Names
More detailed information about this field from each metasource.
Shanghai Rapeseed Database
metasource: Fairsharing.org
version: FAIRsharing.org: SRD; Shanghai Rapeseed Database; DOI: https://doi.org/10.25504/FAIRsharing.e4937j; Last edited: April 26, 2021, 8:41 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
SRD
metasource: Fairsharing.org
version: FAIRsharing.org: SRD; Shanghai Rapeseed Database; DOI: https://doi.org/10.25504/FAIRsharing.e4937j; Last edited: April 26, 2021, 8:41 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
Staphylococcus regulatory RNA database (SRD)
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:26.121356
srd
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:26.121356
Names
More detailed information about this field from each metasource.
Shanghai Rapeseed Database
metasource: Fairsharing.orgversion: FAIRsharing.org: SRD; Shanghai Rapeseed Database; DOI: https://doi.org/10.25504/FAIRsharing.e4937j; Last edited: April 26, 2021, 8:41 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
SRD
metasource: Fairsharing.orgversion: FAIRsharing.org: SRD; Shanghai Rapeseed Database; DOI: https://doi.org/10.25504/FAIRsharing.e4937j; Last edited: April 26, 2021, 8:41 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
Staphylococcus regulatory RNA database (SRD)
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:26.121356
srd
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:26.121356
Other names: SRD, Staphylococcus regulatory RNA database (SRD), srd
Names
More detailed information about this field from each metasource.
Shanghai Rapeseed Database
metasource: Fairsharing.orgversion: FAIRsharing.org: SRD; Shanghai Rapeseed Database; DOI: https://doi.org/10.25504/FAIRsharing.e4937j; Last edited: April 26, 2021, 8:41 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
SRD
metasource: Fairsharing.orgversion: FAIRsharing.org: SRD; Shanghai Rapeseed Database; DOI: https://doi.org/10.25504/FAIRsharing.e4937j; Last edited: April 26, 2021, 8:41 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
Staphylococcus regulatory RNA database (SRD)
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:26.121356
srd
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:26.121356
Shanghai RAPESEED Database: a resource for functional genomics studies of seed development and fatty acid metabolism of Brassica.
Description
More detailed information about this field from each metasource.
Shanghai RAPESEED Database: a resource for functional genomics studies of seed development and fatty acid metabolism of Brassica.
metasource: Fairsharing.orgversion: FAIRsharing.org: SRD; Shanghai Rapeseed Database; DOI: https://doi.org/10.25504/FAIRsharing.e4937j; Last edited: April 26, 2021, 8:41 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
Seed development and fatty acid metabolism of oilseed crops
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
SRD, the ‘Staphylococcal Regulatory RNA Database’ compiles all published data in a single interface including genetic locations, sequences and other features. SRD proposes a simplified and unified identifier for Staphylococcal regulatory RNAs (srn) based on the sRNA’s genetic location in S. aureus strain N315 which served as a reference. SRD provides a list of 575 srn potentially exempt of repeated sequences.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:26.121356
Webpage:
http://srd.genouest.org/Webpage
More detailed information about this field from each metasource.
http://srd.genouest.org/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:26.121356
http://rapeseed.plantsignal.cn
metasource: Fairsharing.orgversion: FAIRsharing.org: SRD; Shanghai Rapeseed Database; DOI: https://doi.org/10.25504/FAIRsharing.e4937j; Last edited: April 26, 2021, 8:41 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://rapeseed.plantsignal.cn/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Publications:
Publications
More detailed information about this field from each metasource.
SRD: a Staphylococcus regulatory RNA database
PMID: 25805861
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:26.121356
Shanghai RAPESEED Database: a resource for functional genomics studies of seed development and fatty acid metabolism of Brassica
PMID: 17916574
metasource: Fairsharing.org
version: FAIRsharing.org: SRD; Shanghai Rapeseed Database; DOI: https://doi.org/10.25504/FAIRsharing.e4937j; Last edited: April 26, 2021, 8:41 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications
More detailed information about this field from each metasource.
SRD: a Staphylococcus regulatory RNA database
PMID: 25805861
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:26.121356
Shanghai RAPESEED Database: a resource for functional genomics studies of seed development and fatty acid metabolism of Brassica
PMID: 17916574
metasource: Fairsharing.org
version: FAIRsharing.org: SRD; Shanghai Rapeseed Database; DOI: https://doi.org/10.25504/FAIRsharing.e4937j; Last edited: April 26, 2021, 8:41 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
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SRD: a Staphylococcus regulatory RNA database
PubMed citations: 33.
33 articles citing: SRD: a Staphylococcus regulatory RNA database
Thirty Years of sRNA-Mediated Regulation in Staphylococcus aureus: From Initial Discoveries to In Vivo Biological Implications. PMID:35806357
Staphylococcal saoABC Operon Codes for a DNA-Binding Protein SaoC Implicated in the Response to Nutrient Deficit. PMID:35742885
RNase III-CLASH of multi-drug resistant Staphylococcus aureus reveals a regulatory mRNA 3'UTR required for intermediate vancomycin resistance. PMID:35732665
RNase III CLASH in MRSA uncovers sRNA regulatory networks coupling metabolism to toxin expression. PMID:35732654
Small RNAs beyond Model Organisms: Have We Only Scratched the Surface? PMID:35457265
Insights Into the Impact of Small RNA SprC on the Metabolism and Virulence of Staphylococcus aureus. PMID:35281456
Expanding the Staphylococcus aureus SarA Regulon to Small RNAs. PMID:34636666
A small regulatory RNA alters Staphylococcus aureus virulence by titrating RNAIII activity. PMID:34554192
Assembling the Current Pieces: The Puzzle of RNA-Mediated Regulation in Staphylococcus aureus. PMID:34367109
Antibiotic tolerance, persistence, and resistance of the evolved minimal cell, Mycoplasma mycoides JCVI-Syn3B. PMID:33997676
Galleria mellonella Larvae as an Infection Model to Investigate sRNA-Mediated Pathogenesis in Staphylococcus aureus. PMID:33954118
Environmental Plasticity of the RNA Content of Staphylococcus aureus Extracellular Vesicles. PMID:33776967
Distinct expression profiles of regulatory RNAs in the response to biocides in Staphylococcus aureus and Enterococcus faecium. PMID:33767282
Reading between the Lines: Utilizing RNA-Seq Data for Global Analysis of sRNAs in Staphylococcus aureus. PMID:32727859
Small RNAs as Fundamental Players in the Transference of Information During Bacterial Infectious Diseases. PMID:32613006
Comparative Transcriptomic and Functional Assessments of Linezolid-Responsive Small RNA Genes in Staphylococcus aureus. PMID:31911464
The Small RNA Teg41 Regulates Expression of the Alpha Phenol-Soluble Modulins and Is Required for Virulence in Staphylococcus aureus. PMID:30723124
Functionality and cross-regulation of the four SprG/SprF type I toxin-antitoxin systems in Staphylococcus aureus. PMID:30551143
A novel Staphylococcus aureus cis-trans type I toxin-antitoxin module with dual effects on bacteria and host cells. PMID:30544243
The Energy-Coupling Factor Transporter Module EcfAA'T, a Novel Candidate for the Genetic Basis of Fatty Acid-Auxotrophic Small-Colony Variants of Staphylococcus aureus. PMID:30154773
Assessment of Bona Fide sRNAs in Staphylococcus aureus. PMID:29515534
Small RNAs in vancomycin-resistant Enterococcus faecium involved in daptomycin response and resistance. PMID:28894187
An outbreak in intravenous drug users due to USA300 Latin-American variant community-acquired methicillin-resistant Staphylococcus aureus in France as early as 2007. PMID:28866784
Complete Genome Sequence and Annotation of the Staphylococcus aureus Strain HG001. PMID:28798184
sRNA and cis-antisense sRNA identification in Staphylococcus aureus highlights an unusual sRNA gene cluster with one encoding a secreted peptide. PMID:28676719
An in vivo reporter assay for sRNA-directed gene control in Gram-positive bacteria: identifying a novel sRNA target in Staphylococcus aureus. PMID:28369640
TSS-EMOTE, a refined protocol for a more complete and less biased global mapping of transcription start sites in bacterial pathogens. PMID:27806702
Insights into the regulation of small RNA expression: SarA represses the expression of two sRNAs in Staphylococcus aureus. PMID:27596601
Enhancement of the pathogenicity of Staphylococcus aureus strain Newman by a small noncoding RNA SprX1. PMID:27438010
Staphylococcus aureus Regulatory RNAs as Potential Biomarkers for Bloodstream Infections. PMID:27224202
Genome-wide Annotation, Identification, and Global Transcriptomic Analysis of Regulatory or Small RNA Gene Expression in Staphylococcus aureus. PMID:26861020
Decay-Initiating Endoribonucleolytic Cleavage by RNase Y Is Kept under Tight Control via Sequence Preference and Sub-cellular Localisation. PMID:26473962
A bacterial regulatory RNA attenuates virulence, spread and human host cell phagocytosis. PMID:26240382 -
Shanghai RAPESEED Database: a resource for functional genomics studies of seed development and fatty acid metabolism of Brassica
PubMed citations: 6.
6 articles citing: Shanghai RAPESEED Database: a resource for functional genomics studies of seed development and fatty acid metabolism of Brassica
Omics: The way forward to enhance abiotic stress tolerance in Brassica napus L. PMID:33464960
FR database 1.0: a resource focused on fruit development and ripening. PMID:25725058
ocsESTdb: a database of oil crop seed EST sequences for comparative analysis and investigation of a global metabolic network and oil accumulation metabolism. PMID:25604238
GOAL: a software tool for assessing biological significance of genes groups. PMID:20459620
Implementation of two high through-put techniques in a novel application: detecting point mutations in large EMS mutated plant populations. PMID:19811648
Identification and expression analysis of WRKY transcription factor genes in canola (Brassica napus L.) in response to fungal pathogens and hormone treatments. PMID:19493335
Tags:
Tags
More detailed information about this field from each metasource.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: SRD; Shanghai Rapeseed Database; DOI: https://doi.org/10.25504/FAIRsharing.e4937j; Last edited: April 26, 2021, 8:41 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
other plants
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
infectious disease
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:26.121356
microbiology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:26.121356
Tags
More detailed information about this field from each metasource.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: SRD; Shanghai Rapeseed Database; DOI: https://doi.org/10.25504/FAIRsharing.e4937j; Last edited: April 26, 2021, 8:41 a.m.; Last accessed: Jan 03 2022 7:07 p.m.
plant databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
other plants
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
infectious disease
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:26.121356
microbiology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:26.121356
genome plant other plants infectious disease microbiology
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