small regulatory RNA in microbial genomes
rna sequence
microRNA precursors and their mapping to targets in vertebrate genomes
microRNAs targets of the influenza virus
Regulatory Network in Protein Phosphorylation
As a database, miRTarBase has accumulated more than fifty thousand miRNA-target interactions (MTIs), which are collected by manually surveying pertinent literature after data mining of the text system ...
Tissue-specific circRNA expression profiles and regulatory networks
Database which stores alternative splicing information generated from EST, mRNA and protein alignments with genomic sequence; text-based queries and graphical views of putative splice variants.
Kinase-inhibitor-disease family map
The database provides a means of investigating alternative splicing and can be used for identifying alternative splicing - related motifs, such as the exonic splicing enhancer (ESE), the exonic splici ...
BSRD is a resource for bacterial sRNA sequences with extensive annotation and expression profiles. BSRD provides combinatorial regulatory networks of transcription factors and sRNAs with their common ...
Protein-protein interactions in various evolutionary lineages
Human RNA-RNA and RNA-protein interactions
smRNA-seq database for miRNA research
Naturally modified nucleosides in RNA
dbPTM is a databases which accumulates the biological information related to protein post-translational modification (PTM), such as the catalytic sites, structural information, solvent accessibility o ...
GenoList is an integrated environment for comparative exploration of microbial genomes. The current release integrates genome data for over 700 species (Genome Reviews). The query and navigation user ...
A database of 3D RNA fragments within known RNA structures
Database of RNA Editing
Phylogenize is a web tool that allows users to link microbial genes to environments, accounting for phylogeny. More specifically, given community composition data, phylogenize links genes in microbia ...
Prediction of viral microRNA candidate hairpins
INDIGO enables the integration of annotations for the exploration and analysis of newly sequenced microbial genomes.