An INtegrated Data warehouse of mIcrobial GenOmes
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An INtegrated Data warehouse of mIcrobial GenOmes
metasource: Fairsharing.org
version: FAIRsharing.org: INDIGO; An INtegrated Data warehouse of mIcrobial GenOmes; DOI: https://doi.org/10.25504/FAIRsharing.oAJNHO; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
INDIGO
metasource: Fairsharing.org
version: FAIRsharing.org: INDIGO; An INtegrated Data warehouse of mIcrobial GenOmes; DOI: https://doi.org/10.25504/FAIRsharing.oAJNHO; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:42.209486
indigo
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:42.209486
Names
More detailed information about this field from each metasource.
An INtegrated Data warehouse of mIcrobial GenOmes
metasource: Fairsharing.orgversion: FAIRsharing.org: INDIGO; An INtegrated Data warehouse of mIcrobial GenOmes; DOI: https://doi.org/10.25504/FAIRsharing.oAJNHO; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
INDIGO
metasource: Fairsharing.orgversion: FAIRsharing.org: INDIGO; An INtegrated Data warehouse of mIcrobial GenOmes; DOI: https://doi.org/10.25504/FAIRsharing.oAJNHO; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:42.209486
indigo
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:42.209486
Names
More detailed information about this field from each metasource.
An INtegrated Data warehouse of mIcrobial GenOmes
metasource: Fairsharing.orgversion: FAIRsharing.org: INDIGO; An INtegrated Data warehouse of mIcrobial GenOmes; DOI: https://doi.org/10.25504/FAIRsharing.oAJNHO; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
INDIGO
metasource: Fairsharing.orgversion: FAIRsharing.org: INDIGO; An INtegrated Data warehouse of mIcrobial GenOmes; DOI: https://doi.org/10.25504/FAIRsharing.oAJNHO; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:42.209486
indigo
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:42.209486
INDIGO enables the integration of annotations for the exploration and analysis of newly sequenced microbial genomes.
Description
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INDIGO enables the integration of annotations for the exploration and analysis of newly sequenced microbial genomes.
metasource: Fairsharing.orgversion: FAIRsharing.org: INDIGO; An INtegrated Data warehouse of mIcrobial GenOmes; DOI: https://doi.org/10.25504/FAIRsharing.oAJNHO; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
INtegrated Data Warehouse of MIcrobial GenOmes with Examples from the Red Sea Extremophiles.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:42.209486
Webpage:
http://www.cbrc.kaust.edu.sa/indigoWebpage
More detailed information about this field from each metasource.
http://www.cbrc.kaust.edu.sa/indigo
metasource: Fairsharing.orgversion: FAIRsharing.org: INDIGO; An INtegrated Data warehouse of mIcrobial GenOmes; DOI: https://doi.org/10.25504/FAIRsharing.oAJNHO; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://www.cbrc.kaust.edu.sa/indigo/begin.do
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:42.209486
Publications:
Publications
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INDIGO - INtegrated data warehouse of microbial genomes with examples from the red sea extremophiles
PMID: 24324765
metasource: Fairsharing.org
version: FAIRsharing.org: INDIGO; An INtegrated Data warehouse of mIcrobial GenOmes; DOI: https://doi.org/10.25504/FAIRsharing.oAJNHO; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:42.209486
Publications
More detailed information about this field from each metasource.
INDIGO - INtegrated data warehouse of microbial genomes with examples from the red sea extremophiles
PMID: 24324765
metasource: Fairsharing.org
version: FAIRsharing.org: INDIGO; An INtegrated Data warehouse of mIcrobial GenOmes; DOI: https://doi.org/10.25504/FAIRsharing.oAJNHO; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:42.209486
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INDIGO - INtegrated data warehouse of microbial genomes with examples from the red sea extremophiles
PubMed citations: 45.
45 articles citing: INDIGO - INtegrated data warehouse of microbial genomes with examples from the red sea extremophiles
Novel Enzymes From the Red Sea Brine Pools: Current State and Potential. PMID:34777282
Coordinated bacterial and plant sulfur metabolism in Enterobacter sp. SA187-induced plant salt stress tolerance. PMID:34772809
KAUST Metagenomic Analysis Platform (KMAP), enabling access to massive analytics of re-annotated metagenomic data. PMID:34075103
Genome-resolved metagenomics using environmental and clinical samples. PMID:33758906
Fine-scale metabolic discontinuity in a stratified prokaryote microbiome of a Red Sea deep halocline. PMID:33649556
Nitrate Respiration in Thermus thermophilus NAR1: from Horizontal Gene Transfer to Internal Evolution. PMID:33158244
Functional Pangenome Analysis Shows Key Features of E Protein Are Preserved in SARS and SARS-CoV-2. PMID:32850499
Sequencing effort dictates gene discovery in marine microbial metagenomes. PMID:32743860
Crystal Structure and Active Site Engineering of a Halophilic γ-Carbonic Anhydrase. PMID:32411108
Genome Insights of the Plant-Growth Promoting Bacterium Cronobacter muytjensii JZ38 With Volatile-Mediated Antagonistic Activity Against Phytophthora infestans. PMID:32218777
Complete genome sequence of the endophytic bacterium Cellulosimicrobium sp. JZ28 isolated from the root endosphere of the perennial desert tussock grass Panicum turgidum. PMID:32172289
Comparative genomics study reveals Red Sea Bacillus with characteristics associated with potential microbial cell factories (MCFs). PMID:31848398
Functional metagenomic analysis of dust-associated microbiomes above the Red Sea. PMID:31551441
Mining biosynthetic gene clusters in Virgibacillus genomes. PMID:31481022
Comparative Genomics of the Genus Methanohalophilus, Including a Newly Isolated Strain From Kebrit Deep in the Red Sea. PMID:31068917
A polyextremophilic alcohol dehydrogenase from the Atlantis II Deep Red Sea brine pool. PMID:30761247
Genome sequence analysis of Zooshikella ganghwensis strain VG4 and its potential for the synthesis of antimicrobial metabolites. PMID:30197874
DES-Mutation: System for Exploring Links of Mutations and Diseases. PMID:30190574
BioPS: System for screening and assessment of biofuel-production potential of cyanobacteria. PMID:30096176
Quorum-Quenching Bacteria Isolated From Red Sea Sediments Reduce Biofilm Formation by Pseudomonas aeruginosa. PMID:30065702
In silico exploration of Red Sea Bacillus genomes for natural product biosynthetic gene clusters. PMID:29788916
Dynamic structure mediates halophilic adaptation of a DNA polymerase from the deep-sea brines of the Red Sea. PMID:29401622
Complete Genome Sequence Analysis of Enterobacter sp. SA187, a Plant Multi-Stress Tolerance Promoting Endophytic Bacterium. PMID:29163376
DES-TOMATO: A Knowledge Exploration System Focused On Tomato Species. PMID:28729549
Building a bio-based industry in the Middle East through harnessing the potential of the Red Sea biodiversity. PMID:28528426
DES-ncRNA: A knowledgebase for exploring information about human micro and long noncoding RNAs based on literature-mining. PMID:28387604
Draft Genome Sequence of the Plant Growth-Promoting Rhizobacterium Acinetobacter radioresistens Strain SA188 Isolated from the Desert Plant Indigofera argentea. PMID:28254978
Draft Genome Sequence of Ochrobactrum intermedium Strain SA148, a Plant Growth-Promoting Desert Rhizobacterium. PMID:28254977
Draft Genome Sequence of Enterobacter sp. Sa187, an Endophytic Bacterium Isolated from the Desert Plant Indigofera argentea. PMID:28209831
Investigation of intra-herd spread of Mycobacterium caprae in cattle by generation and use of a whole-genome sequence. PMID:28194548
Draft Genome Sequence of Plant Growth-Promoting Micrococcus luteus Strain K39 Isolated from Cyperus conglomeratus in Saudi Arabia. PMID:28126944
Draft Genome Sequence of the Plant Growth-Promoting Pseudomonas punonensis Strain D1-6 Isolated from the Desert Plant Erodium hirtum in Jordan. PMID:28082490
In silico screening for candidate chassis strains of free fatty acid-producing cyanobacteria. PMID:28056772
Draft Genome Sequence of the Phosphate-Solubilizing Bacterium Pseudomonas argentinensis Strain SA190 Isolated from the Desert Plant Indigofera argentea. PMID:28007863
Draft Genome Sequence of Halomonas elongata Strain K4, an Endophytic Growth-Promoting Bacterium Enhancing Salinity Tolerance In Planta. PMID:27811099
Draft Genome Sequence of the Plant Growth-Promoting Cupriavidus gilardii Strain JZ4 Isolated from the Desert Plant Tribulus terrestris. PMID:27469951
Metabolic traits of an uncultured archaeal lineage--MSBL1--from brine pools of the Red Sea. PMID:26758088
Diversification and niche adaptations of Nitrospina-like bacteria in the polyextreme interfaces of Red Sea brines. PMID:26657763
Comprehensive Genomic Analyses of the OM43 Clade, Including a Novel Species from the Red Sea, Indicate Ecotype Differentiation among Marine Methylotrophs. PMID:26655752
BEACON: automated tool for Bacterial GEnome Annotation ComparisON. PMID:26283419
toxoMine: an integrated omics data warehouse for Toxoplasma gondii systems biology research. PMID:26130662
Cross-organism analysis using InterMine. PMID:26097192
Draft Genome Sequence of an Obligately Methylotrophic Methanogen, Methanococcoides methylutens, Isolated from Marine Sediment. PMID:25414501
DEOP: a database on osmoprotectants and associated pathways. PMID:25326239
Mining a database of single amplified genomes from Red Sea brine pool extremophiles-improving reliability of gene function prediction using a profile and pattern matching algorithm (PPMA). PMID:24778629
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gene
metasource: Fairsharing.org
version: FAIRsharing.org: INDIGO; An INtegrated Data warehouse of mIcrobial GenOmes; DOI: https://doi.org/10.25504/FAIRsharing.oAJNHO; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: INDIGO; An INtegrated Data warehouse of mIcrobial GenOmes; DOI: https://doi.org/10.25504/FAIRsharing.oAJNHO; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
genome annotation
metasource: Fairsharing.org
version: FAIRsharing.org: INDIGO; An INtegrated Data warehouse of mIcrobial GenOmes; DOI: https://doi.org/10.25504/FAIRsharing.oAJNHO; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
microbiology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:42.209486
genomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:42.209486
nucleic acid structure analysis
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:42.209486
Tags
More detailed information about this field from each metasource.
gene
metasource: Fairsharing.orgversion: FAIRsharing.org: INDIGO; An INtegrated Data warehouse of mIcrobial GenOmes; DOI: https://doi.org/10.25504/FAIRsharing.oAJNHO; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: INDIGO; An INtegrated Data warehouse of mIcrobial GenOmes; DOI: https://doi.org/10.25504/FAIRsharing.oAJNHO; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
genome annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: INDIGO; An INtegrated Data warehouse of mIcrobial GenOmes; DOI: https://doi.org/10.25504/FAIRsharing.oAJNHO; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
microbiology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:42.209486
genomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:42.209486
nucleic acid structure analysis
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:42.209486
gene genome genome annotation microbiology genomics nucleic acid structure analysis
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