Tag: gene structure, introns and exons, splice sites

Annotates variants with biological data such as protein structural information, functionally important residues, conservation of functional domains and evidence of cross-species conservation.

ChimerDB is a database of fusion sequences encompassing bioinformatics analysis of mRNA and EST sequences in the GenBank, manual collection of literature data and integration with other well known databases. Fusion transcripts with nonoverlapping ali ...

Database of Aberrant Splice Sites: sequences flanking cryptic and de novo 3' and 5' splice sites

ASPicDB is a database designed to provide access to reliable annotations of the alternative splicing pattern of human genes, obtained by ASPic algorithm (Castrignano' et al. 2006), and to the functional annotation of predicted isoforms.

The database provides a means of investigating alternative splicing and can be used for identifying alternative splicing - related motifs, such as the exonic splicing enhancer (ESE), the exonic splicing silencer (ESS) and other intronic splicing moti ...

A comprehensive knowledge of all the factors involved in splicing, both proteins and RNAs, and of their interaction network is crucial for reaching a better understanding of this process and its functions. A large part of relevant information is buri ...

Exon annotation database

Genome annotation for alternative splicing

A tool for visualizing splicing of genes from EST data

Exon-exon Junction database

Human Exone Splicing Events

Upstream ORFs and their effect of translation of downstream CDSs

Protein Structure and Alternative Splicing: effects of alternative splicing events on protein structure

RetNet provides tables of genes and loci causing inherited retinal diseases, such as retinitis pigmentosa, macular degeneration and Usher syndrome, and related information. This information is provided to the research community and other interested i ...

This searchable database contains information about the location, structure, and function of spliceosomal introns in the nuclear genome of Saccharomyces cerevisiae. Searches produce reports for each intron satisfying the search criteria, showing key ...

EDAS is a database of alternative splicing derived from the anlaysis of genomic, protein, mRNA and EST data. It provides classification of elementary alternatives into main types, combined searches for specific alternative variants over tissues and d ...

U12-type introns are spliced by the U12-dependent spliceosome and are present in the genomes of many higher eukaryotic lineages including plants, chordates and some invertebrates. The resource described here, the U12 Intron Database (U12DB), aims to ...

ExtraTrain is a new database for exploring Extragenic and Transcriptional information in prokaryotic organisms. Transcriptional regulation processes are the principal mechanisms of adaptation in prokaryotes. In these processes, the regulatory signals ...