EDAS - EST-Derived Alternative Splicing Database

SpliceInfo

The database provides a means of investigating alternative splicing and can be used for identifying alternative splicing - related motifs, such as the exonic splicing enhancer (ESE), the exonic splici ...

ECgene

Genome annotation for alternative splicing

Spliceosome Database

SpliceNest

A tool for visualizing splicing of genes from EST data

ASPicDB

ASPicDB is a database designed to provide access to reliable annotations of the alternative splicing pattern of human genes, obtained by ASPic algorithm (Castrignano' et al. 2006), and to the function ...

Hollywood

Exon annotation database

JuncDB

Exon-exon Junction database

Alternative Splicing Gallery

The Alternative Splicing Gallery (ASG) takes an identifier such as an EnsEMBL gene ID or a RefSeq ID as input, and provides a graph mapping splice events to transcript information. The user can also v ...

HEXEvent

Human Exone Splicing Events

Yeast Intron Database

This searchable database contains information about the location, structure, and function of spliceosomal introns in the nuclear genome of Saccharomyces cerevisiae. Searches produce reports for each i ...

DBASS5/3

Database of Aberrant Splice Sites: sequences flanking cryptic and de novo 3' and 5' splice sites

uORFdb

Upstream ORFs and their effect of translation of downstream CDSs

ALEXA

ALEXA is a microarray design platform for 'alternative expression analysis'. This platform facilitates the design of expression arrays for analysis of mRNA isoforms generated from a single locus by th ...

ASlive

A database for alternative splicing atlas in livestock animals. The alternative splicing in livestock animals database (ASlive.org) is a collection of alternative splicing events across tissues in li ...

APPRIS

Annotates variants with biological data such as protein structural information, functionally important residues, conservation of functional domains and evidence of cross-species conservation.

MeDAS

Alternative splicing during development in 20 species

ASTD

AltSplice and AltExtron provide information on alternative intron/exons, alternative splice events, and isoform splice patterns. AEdb contains: AEdb-Sequence (sequence and properties of alternatively ...

SYSTERS

The integration of SYSTERS, GeneNest and SpliceNest into one framework facilitates the over-all exploration of the whole sequence space covering protein, mRNA and EST sequences, as well as genomic DNA ...

ChimerDB

ChimerDB is a database of fusion sequences encompassing bioinformatics analysis of mRNA and EST sequences in the GenBank, manual collection of literature data and integration with other well known dat ...