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uORFdb

Upstream ORFs and their effect of translation of downstream CDSs

Description

More detailed information about this field from each metasource.

Upstream ORFs and their effect of translation of downstream CDSs

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

Webpage:

http://www.compgen.uni-muenster.de/tools/uorfdb/

Webpage

More detailed information about this field from each metasource.

http://www.compgen.uni-muenster.de/tools/uorfdb/

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

Publications:

Publications
More detailed information about this field from each metasource.

http://dx.doi.org/10.1093/nar/gkt952
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

http://dx.doi.org/10.1093/nar/gkt952

Tags:

Tags
More detailed information about this field from each metasource.

nucleotide sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

gene structure, introns and exons, splice sites
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

nucleic acid sequence gene structure, introns and exons, splice sites

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ProSAS

Protein Structure and Alternative Splicing: effects of alternative splicing events on protein structure

DBASS5/3

Database of Aberrant Splice Sites: sequences flanking cryptic and de novo 3' and 5' splice sites

APPRIS

Annotates variants with biological data such as protein structural information, functionally important residues, conservation of functional domains and evidence of cross-species conservation.

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The database provides a means of investigating alternative splicing and can be used for identifying alternative splicing - related motifs, such as the exonic splicing enhancer (ESE), the exonic splici ...

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This searchable database contains information about the location, structure, and function of spliceosomal introns in the nuclear genome of Saccharomyces cerevisiae. Searches produce reports for each i ...

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EDAS is a database of alternative splicing derived from the anlaysis of genomic, protein, mRNA and EST data. It provides classification of elementary alternatives into main types, combined searches fo ...

U12DB

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ASPicDB

ASPicDB is a database designed to provide access to reliable annotations of the alternative splicing pattern of human genes, obtained by ASPic algorithm (Castrignano' et al. 2006), and to the function ...

SpliceAid-F

A comprehensive knowledge of all the factors involved in splicing, both proteins and RNAs, and of their interaction network is crucial for reaching a better understanding of this process and its funct ...

ChimerDB

ChimerDB is a database of fusion sequences encompassing bioinformatics analysis of mRNA and EST sequences in the GenBank, manual collection of literature data and integration with other well known dat ...

ExtraTrain

ExtraTrain is a new database for exploring Extragenic and Transcriptional information in prokaryotic organisms. Transcriptional regulation processes are the principal mechanisms of adaptation in proka ...

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A reference collection of viral ORFs and their clones

TassDB

TassDB (TAndem Splice Site DataBase) stores extensive data about alternative splice events at GYNGYN donors and NAGNAG acceptors. These splice events are of subtle nature since they mostly result in t ...

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