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ECgene

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Genome annotation for alternative splicing

Description

More detailed information about this field from each metasource.

Genome annotation for alternative splicing

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

Webpage:

http://genome.ewha.ac.kr/ECgene/

Webpage

More detailed information about this field from each metasource.

http://genome.ewha.ac.kr/ECgene/

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

Tags:

Tags
More detailed information about this field from each metasource.

nucleotide sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

gene structure, introns and exons, splice sites
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

nucleic acid sequence gene structure, introns and exons, splice sites

More to explore:

1/20

Spliceosome Database

Hollywood

Exon annotation database

ProSAS

Protein Structure and Alternative Splicing: effects of alternative splicing events on protein structure

SpliceNest

A tool for visualizing splicing of genes from EST data

JuncDB

Exon-exon Junction database

HEXEvent

Human Exone Splicing Events

uORFdb

Upstream ORFs and their effect of translation of downstream CDSs

ChimerDB

ChimerDB is a database of fusion sequences encompassing bioinformatics analysis of mRNA and EST sequences in the GenBank, manual collection of literature data and integration with other well known dat ...

SpliceInfo

The database provides a means of investigating alternative splicing and can be used for identifying alternative splicing - related motifs, such as the exonic splicing enhancer (ESE), the exonic splici ...

DBASS5/3

Database of Aberrant Splice Sites: sequences flanking cryptic and de novo 3' and 5' splice sites

APPRIS

Annotates variants with biological data such as protein structural information, functionally important residues, conservation of functional domains and evidence of cross-species conservation.

miRGator

microRNA target prediction, functional analysis, and gene expression data

EDAS - EST-Derived Alternative Splicing Database

EDAS is a database of alternative splicing derived from the anlaysis of genomic, protein, mRNA and EST data. It provides classification of elementary alternatives into main types, combined searches fo ...

ASPicDB

ASPicDB is a database designed to provide access to reliable annotations of the alternative splicing pattern of human genes, obtained by ASPic algorithm (Castrignano' et al. 2006), and to the function ...

RetNet

RetNet provides tables of genes and loci causing inherited retinal diseases, such as retinitis pigmentosa, macular degeneration and Usher syndrome, and related information. This information is provide ...

Yeast Intron Database

This searchable database contains information about the location, structure, and function of spliceosomal introns in the nuclear genome of Saccharomyces cerevisiae. Searches produce reports for each i ...

U12DB

U12-type introns are spliced by the U12-dependent spliceosome and are present in the genomes of many higher eukaryotic lineages including plants, chordates and some invertebrates. The resource describ ...

SpliceAid-F

A comprehensive knowledge of all the factors involved in splicing, both proteins and RNAs, and of their interaction network is crucial for reaching a better understanding of this process and its funct ...

ASTD

AltSplice and AltExtron provide information on alternative intron/exons, alternative splice events, and isoform splice patterns. AEdb contains: AEdb-Sequence (sequence and properties of alternatively ...

Alternative Splicing Gallery

The Alternative Splicing Gallery (ASG) takes an identifier such as an EnsEMBL gene ID or a RefSeq ID as input, and provides a graph mapping splice events to transcript information. The user can also v ...

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Data is amalgamated and only retrieved periodically.
Some of the resources used by the system:

® FAIRsharing.org
® Bioontology/Bioportal Terms
® Nucleic Acid Research - Database
® re3data.org
® bio.tools
® PubMed - Courtesy of the U.S. National Library of Medicine